151
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Harley CDG, Connell SD, Doubleday ZA, Kelaher B, Russell BD, Sarà G, Helmuth B. Conceptualizing ecosystem tipping points within a physiological framework. Ecol Evol 2017; 7:6035-6045. [PMID: 28808563 PMCID: PMC5551099 DOI: 10.1002/ece3.3164] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2017] [Revised: 05/08/2017] [Accepted: 05/17/2017] [Indexed: 12/11/2022] Open
Abstract
Connecting the nonlinear and often counterintuitive physiological effects of multiple environmental drivers to the emergent impacts on ecosystems is a fundamental challenge. Unfortunately, the disconnect between the way "stressors" (e.g., warming) is considered in organismal (physiological) and ecological (community) contexts continues to hamper progress. Environmental drivers typically elicit biphasic physiological responses, where performance declines at levels above and below some optimum. It is also well understood that species exhibit highly variable response surfaces to these changes so that the optimum level of any environmental driver can vary among interacting species. Thus, species interactions are unlikely to go unaltered under environmental change. However, while these nonlinear, species-specific physiological relationships between environment and performance appear to be general, rarely are they incorporated into predictions of ecological tipping points. Instead, most ecosystem-level studies focus on varying levels of "stress" and frequently assume that any deviation from "normal" environmental conditions has similar effects, albeit with different magnitudes, on all of the species within a community. We consider a framework that realigns the positive and negative physiological effects of changes in climatic and nonclimatic drivers with indirect ecological responses. Using a series of simple models based on direct physiological responses to temperature and ocean pCO 2, we explore how variation in environment-performance relationships among primary producers and consumers translates into community-level effects via trophic interactions. These models show that even in the absence of direct mortality, mismatched responses resulting from often subtle changes in the physical environment can lead to substantial ecosystem-level change.
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Affiliation(s)
- Christopher D. G. Harley
- Department of Zoology and Institute for the Oceans and FisheriesUniversity of British ColumbiaVancouverBritish ColumbiaCanada
| | - Sean D. Connell
- Southern Seas Ecology LaboratoriesSchool of Biological Sciences & Environment InstituteUniversity of AdelaideAdelaideSouth AustraliaAustralia
| | - Zoë A. Doubleday
- Southern Seas Ecology LaboratoriesSchool of Biological Sciences & Environment InstituteUniversity of AdelaideAdelaideSouth AustraliaAustralia
| | - Brendan Kelaher
- National Marine Science Centre & Centre for Coastal Biogeochemistry ResearchSchool of Environment, Science and EngineeringSouthern Cross UniversityCoffs HarbourNew South WalesAustralia
| | - Bayden D. Russell
- The Swire Institute of Marine ScienceSchool of Biological SciencesThe University of Hong KongHong KongHong Kong
| | - Gianluca Sarà
- Laboratorio di Ecologia SperimentaleDipartimento di Scienze della Terra e del MareUniversità degli Studi di PalermoPalermoItaly
| | - Brian Helmuth
- Department of Marine and Environmental Sciences and School of Public Policy and Urban AffairsNortheastern UniversityBostonMAUSA
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152
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Brett TS, Drake JM, Rohani P. Anticipating the emergence of infectious diseases. J R Soc Interface 2017; 14:20170115. [PMID: 28679666 PMCID: PMC5550966 DOI: 10.1098/rsif.2017.0115] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 06/09/2017] [Indexed: 12/02/2022] Open
Abstract
In spite of medical breakthroughs, the emergence of pathogens continues to pose threats to both human and animal populations. We present candidate approaches for anticipating disease emergence prior to large-scale outbreaks. Through use of ideas from the theories of dynamical systems and stochastic processes we develop approaches which are not specific to a particular disease system or model, but instead have general applicability. The indicators of disease emergence detailed in this paper can be classified into two parallel approaches: a set of early-warning signals based around the theory of critical slowing down and a likelihood-based approach. To test the reliability of these two approaches we contrast theoretical predictions with simulated data. We find good support for our methods across a range of different model structures and parameter values.
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Affiliation(s)
- Tobias S Brett
- Odum School of Ecology, University of Georgia, Athens, GA, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
| | - John M Drake
- Odum School of Ecology, University of Georgia, Athens, GA, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
| | - Pejman Rohani
- Odum School of Ecology, University of Georgia, Athens, GA, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
- Department of Infectious Diseases, University of Georgia, Athens, GA, USA
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153
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Petrovskii S, Sekerci Y, Venturino E. Regime shifts and ecological catastrophes in a model of plankton-oxygen dynamics under the climate change. J Theor Biol 2017; 424:91-109. [DOI: 10.1016/j.jtbi.2017.04.018] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Revised: 04/12/2017] [Accepted: 04/20/2017] [Indexed: 10/19/2022]
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154
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Body size shifts and early warning signals precede the historic collapse of whale stocks. Nat Ecol Evol 2017; 1:188. [PMID: 28812591 DOI: 10.1038/s41559-017-0188] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Accepted: 05/10/2017] [Indexed: 11/09/2022]
Abstract
Predicting population declines is a key challenge in the face of global environmental change. Abundance-based early warning signals have been shown to precede population collapses; however, such signals are sensitive to the low reliability of abundance estimates. Here, using historical data on whales harvested during the 20th century, we demonstrate that early warning signals can be present not only in the abundance data, but also in the more reliable body size data of wild populations. We show that during the period of commercial whaling, the mean body size of caught whales declined dramatically (by up to 4 m over a 70-year period), leading to early warning signals being detectable up to 40 years before the global collapse of whale stocks. Combining abundance and body size data can reduce the length of the time series required to predict collapse, and decrease the chances of false positive early warning signals.
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155
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Vegetation recovery in tidal marshes reveals critical slowing down under increased inundation. Nat Commun 2017; 8:15811. [PMID: 28598430 PMCID: PMC5472773 DOI: 10.1038/ncomms15811] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 04/27/2017] [Indexed: 11/08/2022] Open
Abstract
A declining rate of recovery following disturbance has been proposed as an important early warning for impending tipping points in complex systems. Despite extensive theoretical and laboratory studies, this ‘critical slowing down' remains largely untested in the complex settings of real-world ecosystems. Here, we provide both observational and experimental support of critical slowing down along natural stress gradients in tidal marsh ecosystems. Time series of aerial images of European marsh development reveal a consistent lengthening of recovery time as inundation stress increases. We corroborate this finding with transplantation experiments in European and North American tidal marshes. In particular, our results emphasize the power of direct observational or experimental measures of recovery over indirect statistical signatures, such as spatial variance or autocorrelation. Our results indicate that the phenomenon of critical slowing down can provide a powerful tool to probe the resilience of natural ecosystems. Theory and controlled experiments have shown that the recovery rate of an ecological variable from perturbation slows down before a critical tipping point. Here, van Belzen and colleagues demonstrate that slowed vegetation recovery to disturbance is also apparent in the natural system of a tidal marsh.
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156
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Slow Recovery from Local Disturbances as an Indicator for Loss of Ecosystem Resilience. Ecosystems 2017; 21:141-152. [PMID: 31983890 PMCID: PMC6954009 DOI: 10.1007/s10021-017-0154-8] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Accepted: 03/11/2017] [Indexed: 11/21/2022]
Abstract
A range of indicators have been proposed for identifying the elevated risk of critical transitions in ecosystems. Most indicators are based on the idea that critical slowing down can be inferred from changes in statistical properties of natural fluctuations and spatial patterns. However, identifying these signals in nature has remained challenging. An alternative approach is to infer changes in resilience from differences in standardized experimental perturbations. However, system-wide experimental perturbations are rarely feasible. Here we evaluate the potential to infer the risk of large-scale systemic transitions from local experimental or natural perturbations. We use models of spatially explicit landscapes to illustrate how recovery rates upon small-scale perturbations decrease as an ecosystem approaches a tipping point for a large-scale collapse. We show that the recovery trajectory depends on: (1) the resilience of the ecosystem at large scale, (2) the dispersal rate of organisms, and (3) the scale of the perturbation. In addition, we show that recovery of natural disturbances in a heterogeneous environment can potentially function as an indicator of resilience of a large-scale ecosystem. Our analyses reveal fundamental differences between large-scale weak and local-scale strong perturbations, leading to an overview of opportunities and limitations of the use of local disturbance-recovery experiments.
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157
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Direct observation of increasing recovery length before collapse of a marine benthic ecosystem. Nat Ecol Evol 2017; 1:153. [DOI: 10.1038/s41559-017-0153] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 03/24/2017] [Indexed: 11/08/2022]
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158
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Ratajczak Z, D'Odorico P, Collins SL, Bestelmeyer BT, Isbell FI, Nippert JB. The interactive effects of press/pulse intensity and duration on regime shifts at multiple scales. ECOL MONOGR 2017. [DOI: 10.1002/ecm.1249] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Zak Ratajczak
- Environmental Science University of Virginia Clark Hall Charlottesville Virginia 29903 USA
| | - Paolo D'Odorico
- Environmental Science University of Virginia Clark Hall Charlottesville Virginia 29903 USA
- National Socio‐Environmental Synthesis Center University of Maryland Annapolis Maryland 21401 USA
- Department of Environmental Science Policy and Management University of California Berkeley Berkeley California 94720 USA
| | - Scott L. Collins
- Department of Biology University of New Mexico Albuquerque New Mexico 87131 USA
| | - Brandon T. Bestelmeyer
- USDA‐ARS Jornada Experimental Range and Jornada Basin LTER New Mexico State University Las Cruces New Mexico 88003 USA
| | - Forest I. Isbell
- Department of Ecology, Evolution and Behavior University of Minnesota Saint Paul Minnesota 55108 USA
| | - Jesse B. Nippert
- Division of Biology Kansas State University Manhattan Kansas 66506 USA
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159
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Dakos V, Glaser SM, Hsieh CH, Sugihara G. Elevated nonlinearity as an indicator of shifts in the dynamics of populations under stress. J R Soc Interface 2017; 14:20160845. [PMID: 28250096 PMCID: PMC5378125 DOI: 10.1098/rsif.2016.0845] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 02/03/2017] [Indexed: 11/12/2022] Open
Abstract
Populations occasionally experience abrupt changes, such as local extinctions, strong declines in abundance or transitions from stable dynamics to strongly irregular fluctuations. Although most of these changes have important ecological and at times economic implications, they remain notoriously difficult to detect in advance. Here, we study changes in the stability of populations under stress across a variety of transitions. Using a Ricker-type model, we simulate shifts from stable point equilibrium dynamics to cyclic and irregular boom-bust oscillations as well as abrupt shifts between alternative attractors. Our aim is to infer the loss of population stability before such shifts based on changes in nonlinearity of population dynamics. We measure nonlinearity by comparing forecast performance between linear and nonlinear models fitted on reconstructed attractors directly from observed time series. We compare nonlinearity to other suggested leading indicators of instability (variance and autocorrelation). We find that nonlinearity and variance increase in a similar way prior to the shifts. By contrast, autocorrelation is strongly affected by oscillations. Finally, we test these theoretical patterns in datasets of fisheries populations. Our results suggest that elevated nonlinearity could be used as an additional indicator to infer changes in the dynamics of populations under stress.
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Affiliation(s)
- Vasilis Dakos
- Institute of Integrative Biology, Center for Adaptation to a Changing Environment, ETH Zurich, Zurich, Switzerland
| | - Sarah M Glaser
- Korbel School of International Studies, University of Denver, Denver, USA
- Secure Fisheries, One Earth Future Foundation, Broomfield, CO, USA
| | - Chih-Hao Hsieh
- Institute of Oceanography, Department of Life Science, National Taiwan University, Taiwan, Republic of China
- Institute of Ecology and Evolutionary Biology, Department of Life Science, National Taiwan University, Taiwan, Republic of China
- Research Center for Environmental Changes, Academia Sinica, Taiwan, Republic of China
| | - George Sugihara
- Scripps Institution of Oceanography, University of California-San Diego, San Diego, CA, USA
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160
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Liang J, Hu Y, Chen G, Zhou T. A universal indicator of critical state transitions in noisy complex networked systems. Sci Rep 2017; 7:42857. [PMID: 28230166 PMCID: PMC5322368 DOI: 10.1038/srep42857] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2016] [Accepted: 01/18/2017] [Indexed: 11/28/2022] Open
Abstract
Critical transition, a phenomenon that a system shifts suddenly from one state to another, occurs in many real-world complex networks. We propose an analytical framework for exactly predicting the critical transition in a complex networked system subjected to noise effects. Our prediction is based on the characteristic return time of a simple one-dimensional system derived from the original higher-dimensional system. This characteristic time, which can be easily calculated using network data, allows us to systematically separate the respective roles of dynamics, noise and topology of the underlying networked system. We find that the noise can either prevent or enhance critical transitions, playing a key role in compensating the network structural defect which suffers from either internal failures or environmental changes, or both. Our analysis of realistic or artificial examples reveals that the characteristic return time is an effective indicator for forecasting the sudden deterioration of complex networks.
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Affiliation(s)
- Junhao Liang
- School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, P.R. China
| | - Yanqing Hu
- School of Data and Computer Sciences, Sun Yat-Sen University, Guangzhou 510275, P.R. China
| | - Guanrong Chen
- Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong SAR, P.R. China
| | - Tianshou Zhou
- School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, P.R. China.,Key Laboratory of Computational Mathematics, Guangdong Province, Guangzhou 510275, P.R. China
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161
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Michael E, Madon S. Socio-ecological dynamics and challenges to the governance of Neglected Tropical Disease control. Infect Dis Poverty 2017; 6:35. [PMID: 28166826 PMCID: PMC5292817 DOI: 10.1186/s40249-016-0235-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2016] [Accepted: 12/29/2016] [Indexed: 12/22/2022] Open
Abstract
The current global attempts to control the so-called “Neglected Tropical Diseases (NTDs)” have the potential to significantly reduce the morbidity suffered by some of the world’s poorest communities. However, the governance of these control programmes is driven by a managerial rationality that assumes predictability of proposed interventions, and which thus primarily seeks to improve the cost-effectiveness of implementation by measuring performance in terms of pre-determined outputs. Here, we argue that this approach has reinforced the narrow normal-science model for controlling parasitic diseases, and in doing so fails to address the complex dynamics, uncertainty and socio-ecological context-specificity that invariably underlie parasite transmission. We suggest that a new governance approach is required that draws on a combination of non-equilibrium thinking about the operation of complex, adaptive, systems from the natural sciences and constructivist social science perspectives that view the accumulation of scientific knowledge as contingent on historical interests and norms, if more effective control approaches sufficiently sensitive to local disease contexts are to be devised, applied and managed. At the core of this approach is an emphasis on the need for a process that assists with the inclusion of diverse perspectives, social learning and deliberation, and a reflexive approach to addressing system complexity and incertitude, while balancing this flexibility with stability-focused structures. We derive and discuss a possible governance framework and outline an organizational structure that could be used to effectively deal with the complexity of accomplishing global NTD control. We also point to examples of complexity-based management structures that have been used in parasite control previously, which could serve as practical templates for developing similar governance structures to better manage global NTD control. Our results hold important wider implications for global health policy aiming to effectively control and eradicate parasitic diseases across the world.
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Affiliation(s)
- Edwin Michael
- Eck Institute for Global Health, Department of Biological Sciences, University of Notre Dame, Notre Dame, USA.
| | - Shirin Madon
- Department of International Development, London School of Economics and Political Science, London, UK.,Department of Management, London School of Economics and Political Science, London, UK
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162
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Seekell DA, Carr J, Dell’Angelo J, D’Odorico P, Fader M, Gephart JA, Kummu M, Magliocca N, Porkka M, Puma MJ, Ratajczak Z, Rulli MC, Suweis S, Tavoni A. Resilience in the global food system. ENVIRONMENTAL RESEARCH LETTERS : ERL [WEB SITE] 2017; 12:025010. [PMID: 32818038 PMCID: PMC7430509 DOI: 10.1088/1748-9326/aa5730] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Ensuring food security requires food production and distribution systems function throughout disruptions. Understanding the factors that contribute to the global food system's ability to respond and adapt to such disruptions (i.e. resilience) is critical for understanding the long-term sustainability of human populations. Variable impacts of production shocks on food supply between countries indicate a need for national-scale resilience indicators that can provide global comparisons. However, methods for tracking changes in resilience have had limited application to food systems. We developed an indicator-based analysis of food systems resilience for the years 1992-2011. Our approach is based on three dimensions of resilience: socio-economic access to food in terms of income of the poorest quintile relative to food prices, biophysical capacity to intensify or extensify food production, and the magnitude and diversity of current domestic food production. The socio-economic indicator has large variability, but with low values concentrated in Africa and Asia. The biophysical capacity indicator is highest in Africa and Eastern Europe, in part because of high potential for extensification of cropland and for yield gap closure in cultivated areas. However, the biophysical capacity indicator has declined globally in recent years. The production diversity indicator has increased slightly, with a relatively even geographic distribution. Few countries had exclusively high or low values for all indicators. Collectively, these results are the basis for global comparisons of resilience between nations, and provide necessary context for developing generalizations about the resilience in the global food system.
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Affiliation(s)
- David A. Seekell
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
- Corresponding author,
| | - Joel Carr
- Department of Environmental Sciences, University of Virginia, Charlottesville, Virginia
| | - Jampel Dell’Angelo
- National Center for Socio-Environmental Synthesis, University of Maryland, Annapolis, Maryland
| | - Paolo D’Odorico
- Department of Environmental Sciences, University of Virginia, Charlottesville, Virginia
| | - Marianela Fader
- International Centre for Water Resources and Global Change (UNESCO), hosted by the Federal Institute of Hydrology, Koblenz, Germany
| | - Jessica A. Gephart
- Department of Environmental Sciences, University of Virginia, Charlottesville, Virginia
| | - Matti Kummu
- Water & Development Research Group, Aalto University, Aalto, Finland
| | - Nicholas Magliocca
- National Center for Socio-Environmental Synthesis, University of Maryland, Annapolis, Maryland
| | - Miina Porkka
- Water & Development Research Group, Aalto University, Aalto, Finland
| | - Michael J. Puma
- Center for Climate Systems Research & Center for Climate and Life, Columbia University, NASA Goddard Institute for Space Studies, New York, New York
| | - Zak Ratajczak
- Department of Environmental Sciences, University of Virginia, Charlottesville, Virginia
| | - Maria Cristina Rulli
- Dipartimento di Ingegneria Civile e Ambientale, Politecnico di Milano, Milano, Italy
| | - Samir Suweis
- Department of Physics and Astronomy, University of Padova, Padova, Italy
| | - Alessandro Tavoni
- Grantham Institute on Climate Change and the Environment, London School of Economics, London, United Kingdom
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163
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Sundstrom SM, Eason T, Nelson RJ, Angeler DG, Barichievy C, Garmestani AS, Graham NA, Granholm D, Gunderson L, Knutson M, Nash KL, Spanbauer T, Stow CA, Allen CR. Detecting spatial regimes in ecosystems. Ecol Lett 2017; 20:19-32. [PMID: 28000431 PMCID: PMC6141036 DOI: 10.1111/ele.12709] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Revised: 10/14/2016] [Accepted: 10/28/2016] [Indexed: 11/30/2022]
Abstract
Research on early warning indicators has generally focused on assessing temporal transitions with limited application of these methods to detecting spatial regimes. Traditional spatial boundary detection procedures that result in ecoregion maps are typically based on ecological potential (i.e. potential vegetation), and often fail to account for ongoing changes due to stressors such as land use change and climate change and their effects on plant and animal communities. We use Fisher information, an information theory-based method, on both terrestrial and aquatic animal data (U.S. Breeding Bird Survey and marine zooplankton) to identify ecological boundaries, and compare our results to traditional early warning indicators, conventional ecoregion maps and multivariate analyses such as nMDS and cluster analysis. We successfully detected spatial regimes and transitions in both terrestrial and aquatic systems using Fisher information. Furthermore, Fisher information provided explicit spatial information about community change that is absent from other multivariate approaches. Our results suggest that defining spatial regimes based on animal communities may better reflect ecological reality than do traditional ecoregion maps, especially in our current era of rapid and unpredictable ecological change.
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Affiliation(s)
- Shana M. Sundstrom
- School of Natural Resources, 103 Hardin Hall, 3310 Holdrege St., University of Nebraska-Lincoln, NE 68583, USA
| | - Tarsha Eason
- U.S. Environmental Protection Agency, National Risk Management Research Laboratory, Cincinnati, OH 45268, USA; ,
| | - R. John Nelson
- University of Victoria, Department of Biology-Centre for Biomedical Research, Victoria, BC, V8P 5C2, Canada;
| | - David G. Angeler
- Swedish University of Agricultural Sciences, Department of Aquatic Sciences and Assessment, Box 7050, SE- 750 07 Uppsala, Sweden;
| | | | - Ahjond S. Garmestani
- U.S. Environmental Protection Agency, National Risk Management Research Laboratory, Cincinnati, OH 45268, USA; ,
| | | | - Dean Granholm
- U.S. Fish & Wildlife Service, Bloomington, MN 55437-1003, USA;
| | - Lance Gunderson
- Department of Environmental Studies, Emory University, Atlanta, Georgia 30322, USA;
| | - Melinda Knutson
- Region 3 U.S. Fish & Wildlife Service, La Crosse, WI 54603, USA;
| | - Kirsty L. Nash
- Centre for Marine Socioecology, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7000, Australia;
| | - Trisha Spanbauer
- National Research Council, U.S. Environmental Protection Agency, Cincinnati, Ohio 45268 USA;
| | - Craig A. Stow
- National Oceanographic and Atmospheric Administration Great Lakes Environmental Research Laboratory, Ann Arbor, MI 48108, USA;
| | - Craig R. Allen
- U.S. Geological Survey - Nebraska Cooperative Fish & Wildlife Research Unit, University of Nebraska, Lincoln, NE 68583, USA;
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164
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Kioko J, Taylor K, Milne HJ, Hayes KZ, Kiffner C. Temporal gland secretion in African elephants (Loxodonta africana). Mamm Biol 2017. [DOI: 10.1016/j.mambio.2016.07.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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165
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Abstract
Directional change in environmental drivers sometimes triggers regime shifts in ecosystems. Theory and experiments suggest that regime shifts can be detected in advance, and perhaps averted, by monitoring resilience indicators such as variance and autocorrelation of key ecosystem variables. However, it is uncertain whether management action prompted by a change in resilience indicators can prevent an impending regime shift. We caused a cyanobacterial bloom by gradually enriching an experimental lake while monitoring an unenriched reference lake and a continuously enriched reference lake. When resilience indicators exceeded preset boundaries, nutrient enrichment was stopped in the experimental lake. Concentrations of algal pigments, dissolved oxygen saturation, and pH rapidly declined following cessation of nutrient enrichment and became similar to the unenriched lake, whereas a large bloom occurred in the continuously enriched lake. This outcome suggests that resilience indicators may be useful in management to prevent unwanted regime shifts, at least in some situations. Nonetheless, a safer approach to ecosystem management would build and maintain the resilience of desirable ecosystem conditions, for example, by preventing excessive nutrient input to lakes and reservoirs.
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166
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Litzow MA, Hunsicker ME. Early warning signals, nonlinearity, and signs of hysteresis in real ecosystems. Ecosphere 2016. [DOI: 10.1002/ecs2.1614] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Affiliation(s)
- Michael A. Litzow
- Farallon Institute for Advanced Ecosystem Research Petaluma California 94952 USA
| | - Mary E. Hunsicker
- Fish Ecology Division Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration Newport Oregon 97365 USA
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167
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Gopalakrishnan EA, Sharma Y, John T, Dutta PS, Sujith RI. Early warning signals for critical transitions in a thermoacoustic system. Sci Rep 2016; 6:35310. [PMID: 27767065 PMCID: PMC5073343 DOI: 10.1038/srep35310] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Accepted: 09/27/2016] [Indexed: 01/24/2023] Open
Abstract
Dynamical systems can undergo critical transitions where the system suddenly shifts from one stable state to another at a critical threshold called the tipping point. The decrease in recovery rate to equilibrium (critical slowing down) as the system approaches the tipping point can be used to identify the proximity to a critical transition. Several measures have been adopted to provide early indications of critical transitions that happen in a variety of complex systems. In this study, we use early warning indicators to predict subcritical Hopf bifurcation occurring in a thermoacoustic system by analyzing the observables from experiments and from a theoretical model. We find that the early warning measures perform as robust indicators in the presence and absence of external noise. Thus, we illustrate the applicability of these indicators in an engineering system depicting critical transitions.
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Affiliation(s)
- E. A. Gopalakrishnan
- Department of Aerospace Engineering, Indian Institute of Technology Madras, 600036, India
| | - Yogita Sharma
- Department of Mathematics, Indian Institute of Technology Ropar, 140001, India
| | - Tony John
- Department of Aerospace Engineering, Indian Institute of Technology Madras, 600036, India
| | | | - R. I. Sujith
- Department of Aerospace Engineering, Indian Institute of Technology Madras, 600036, India
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168
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Clements CF, Ozgul A. Rate of forcing and the forecastability of critical transitions. Ecol Evol 2016; 6:7787-7793. [PMID: 30128129 PMCID: PMC6093161 DOI: 10.1002/ece3.2531] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 09/02/2016] [Accepted: 09/06/2016] [Indexed: 11/21/2022] Open
Abstract
Critical transitions are qualitative changes of state that occur when a stochastic dynamical system is forced through a critical point. Many critical transitions are preceded by characteristic fluctuations that may serve as model‐independent early warning signals, implying that these events may be predictable in applications ranging from physics to biology. In nonbiological systems, the strength of such early warning signals has been shown partly to be determined by the speed at which the transition occurs. It is currently unknown whether biological systems, which are inherently high dimensional and typically display low signal‐to‐noise ratios, also exhibit this property, which would have important implications for how ecosystems are managed, particularly where the forces exerted on a system are anthropogenic. We examine whether the rate of forcing can alter the strength of early warning signals in (1) a model exhibiting a fold bifurcation where a state shift is driven by the harvesting of individuals, and (2) a model exhibiting a transcritical bifurcation where a state shift is driven by increased grazing pressure. These models predict that the rate of forcing can alter the detectability of early warning signals regardless of the underlying bifurcation the system exhibits, but that this result may be more pronounced in fold bifurcations. These findings have important implications for the management of biological populations, particularly harvested systems such as fisheries, and suggest that knowing the class of bifurcations a system will manifest may help discriminate between true‐positive and false‐positive signals.
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Affiliation(s)
- Christopher F Clements
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | - Arpat Ozgul
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
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169
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Hefley TJ, Hooten MB, Drake JM, Russell RE, Walsh DP. When can the cause of a population decline be determined? Ecol Lett 2016; 19:1353-1362. [DOI: 10.1111/ele.12671] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Revised: 07/19/2016] [Accepted: 08/03/2016] [Indexed: 11/30/2022]
Affiliation(s)
- Trevor J. Hefley
- Department of Statistics and Department of Fish, Wildlife, and Conservation Biology Colorado State University Fort Collins CO80523 USA
| | - Mevin B. Hooten
- Department of Statistics and Department of Fish, Wildlife, and Conservation Biology Colorado State University Fort Collins CO80523 USA
- U.S. Geological Survey Colorado Cooperative Fish and Wildlife Unit Fort Collins CO 80523 USA
| | - John M. Drake
- Odum School of Ecology, University of Georgia Athens GA30602
| | - Robin E. Russell
- U.S. Geological Survey, National Wildlife Health Center Madison WI 80523 USA
| | - Daniel P. Walsh
- U.S. Geological Survey, National Wildlife Health Center Madison WI 80523 USA
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170
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Delayed threshold response of a rodent population to human-induced landscape change. Oecologia 2016; 182:1075-1082. [DOI: 10.1007/s00442-016-3736-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 09/14/2016] [Indexed: 10/21/2022]
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171
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Gorban AN, Tyukina TA, Smirnova EV, Pokidysheva LI. Evolution of adaptation mechanisms: Adaptation energy, stress, and oscillating death. J Theor Biol 2016; 405:127-39. [DOI: 10.1016/j.jtbi.2015.12.017] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Revised: 12/11/2015] [Accepted: 12/16/2015] [Indexed: 12/16/2022]
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172
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173
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174
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Jarvis L, McCann K, Tunney T, Gellner G, Fryxell JM. Early warning signals detect critical impacts of experimental warming. Ecol Evol 2016; 6:6097-106. [PMID: 27648228 PMCID: PMC5016634 DOI: 10.1002/ece3.2339] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Revised: 06/28/2016] [Accepted: 06/30/2016] [Indexed: 11/06/2022] Open
Abstract
Earth's surface temperatures are projected to increase by ~1-4°C over the next century, threatening the future of global biodiversity and ecosystem stability. While this has fueled major progress in the field of physiological trait responses to warming, it is currently unclear whether routine population monitoring data can be used to predict temperature-induced population collapse. Here, we integrate trait performance theory with that of critical tipping points to test whether early warning signals can be reliably used to anticipate thermally induced extinction events. We find that a model parameterized by experimental growth rates exhibits critical slowing down in the vicinity of an experimentally tested critical threshold, suggesting that dynamical early warning signals may be useful in detecting the potentially precipitous onset of population collapse due to global climate change.
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Affiliation(s)
- Lauren Jarvis
- Department of Integrative Biology University of Guelph Guelph Ontario N1G 2W1 Canada
| | - Kevin McCann
- Department of Integrative Biology University of Guelph Guelph Ontario N1G 2W1 Canada
| | - Tyler Tunney
- Center for Limnology University of Wisconsin Madison Madison Wisconsin 53706
| | - Gabriel Gellner
- Department of Environmental Science and Policy University of California Davis Davis California 95616
| | - John M Fryxell
- Department of Integrative Biology University of Guelph Guelph Ontario N1G 2W1 Canada
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175
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Slowing Down of Recovery as Generic Risk Marker for Acute Severity Transitions in Chronic Diseases. Crit Care Med 2016; 44:601-6. [PMID: 26765499 DOI: 10.1097/ccm.0000000000001564] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
OBJECTIVE We propose a novel paradigm to predict acute attacks and exacerbations in chronic episodic disorders such as asthma, cardiac arrhythmias, migraine, epilepsy, and depression. A better generic understanding of acute transitions in chronic dynamic diseases is increasingly important in critical care medicine because of the higher prevalence and incidence of these chronic diseases in our aging societies. DATA SOURCES PubMed, Medline, and Web of Science. STUDY SELECTION We selected studies from biology and medicine providing evidence of slowing down after a perturbation as a warning signal for critical transitions. DATA EXTRACTION Recent work in ecology, climate, and systems biology has shown that slowing down of recovery upon perturbations can indicate loss of resilience across complex, nonlinear biologic systems that are approaching a tipping point. This observation is supported by the empiric studies in pathophysiology and controlled laboratory experiments with other living systems, which can flip from one state of clinical balance to a contrasting one. We discuss examples of such evidence in bodily functions such as blood pressure, heart rate, mood, and respiratory regulation when a tipping point for a transition is near. CONCLUSIONS We hypothesize that in a range of chronic episodic diseases, indicators of critical slowing down, such as rising variance and temporal correlation, may be used to assess the risk of attacks, exacerbations, and even mortality. Identification of such early warning signals over a range of diseases will enhance the understanding of why, how, and when attacks and exacerbations will strike and may thus improve disease management in critical care medicine.
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176
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Atwood TC, Marcot BG, Douglas DC, Amstrup SC, Rode KD, Durner GM, Bromaghin JF. Forecasting the relative influence of environmental and anthropogenic stressors on polar bears. Ecosphere 2016. [DOI: 10.1002/ecs2.1370] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Todd C. Atwood
- Alaska Science CenterU.S. Geological Survey Anchorage Alaska 99508 USA
| | - Bruce G. Marcot
- Pacific Northwest Research StationU.S.D.A. Forest Service Portland Oregon 97208 USA
| | - David C. Douglas
- Alaska Science CenterU.S. Geological Survey Juneau Alaska 99801 USA
| | | | - Karyn D. Rode
- Alaska Science CenterU.S. Geological Survey Anchorage Alaska 99508 USA
| | - George M. Durner
- Alaska Science CenterU.S. Geological Survey Anchorage Alaska 99508 USA
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177
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Network Modeling and Assessment of Ecosystem Health by a Multi-Population Swarm Optimized Neural Network Ensemble. APPLIED SCIENCES-BASEL 2016. [DOI: 10.3390/app6060175] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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178
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Gellner G, McCann KS, Hastings A. The duality of stability: towards a stochastic theory of species interactions. THEOR ECOL-NETH 2016. [DOI: 10.1007/s12080-016-0303-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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179
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Weissmann H, Shnerb NM. Predicting catastrophic shifts. J Theor Biol 2016; 397:128-34. [PMID: 26970446 DOI: 10.1016/j.jtbi.2016.02.033] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Revised: 01/24/2016] [Accepted: 02/24/2016] [Indexed: 11/18/2022]
Abstract
Catastrophic shifts are known to pose a serious threat to ecology, and a reliable set of early warning indicators is desperately needed. However, the tools suggested so far have two problems. First, they cannot discriminate between a smooth transition and an imminent irreversible shift. Second, they aimed at predicting the tipping point where a state loses its stability, but in noisy spatial system the actual transition occurs when an alternative state invades. Here we suggest a cluster tracking technique that solves both problems, distinguishing between smooth and catastrophic transitions and to identify an imminent shift in both cases. Our method may allow for the prediction, and thus hopefully the prevention of such transitions, avoiding their destructive outcomes.
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Affiliation(s)
- Haim Weissmann
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel.
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan IL52900, Israel
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180
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Di Fonzo MMI, Collen B, Chauvenet ALM, Mace GM. Patterns of mammalian population decline inform conservation action. J Appl Ecol 2016. [DOI: 10.1111/1365-2664.12659] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Martina M. I. Di Fonzo
- Institute of Zoology; Zoological Society of London; Regent's Park London NW1 4RY UK
- Division of Ecology and Evolution; Imperial College London; Silwood Park Ascot SL5 7PY UK
- ARC Centre of Excellence for Environmental Decisions; the NERP Environmental Decisions Hub; Centre for Biodiversity and Conservation Science; School of Biological Sciences; The University of Queensland; Brisbane Qld 4072 Australia
| | - Ben Collen
- Department of Genetics, Evolution and Environment; Centre for Biodiversity & Environment Research; University College London; Gower Street London WC1E 6BT UK
| | - Aliénor L. M. Chauvenet
- ARC Centre of Excellence for Environmental Decisions; the NERP Environmental Decisions Hub; Centre for Biodiversity and Conservation Science; School of Biological Sciences; The University of Queensland; Brisbane Qld 4072 Australia
| | - Georgina M. Mace
- Division of Ecology and Evolution; Imperial College London; Silwood Park Ascot SL5 7PY UK
- Department of Genetics, Evolution and Environment; Centre for Biodiversity & Environment Research; University College London; Gower Street London WC1E 6BT UK
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181
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Clements CF, Ozgul A. Including trait-based early warning signals helps predict population collapse. Nat Commun 2016; 7:10984. [PMID: 27009968 PMCID: PMC4820807 DOI: 10.1038/ncomms10984] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Accepted: 02/05/2016] [Indexed: 11/11/2022] Open
Abstract
Foreseeing population collapse is an on-going target in ecology, and this has led to the development of early warning signals based on expected changes in leading indicators before a bifurcation. Such signals have been sought for in abundance time-series data on a population of interest, with varying degrees of success. Here we move beyond these established methods by including parallel time-series data of abundance and fitness-related trait dynamics. Using data from a microcosm experiment, we show that including information on the dynamics of phenotypic traits such as body size into composite early warning indices can produce more accurate inferences of whether a population is approaching a critical transition than using abundance time-series alone. By including fitness-related trait information alongside traditional abundance-based early warning signals in a single metric of risk, our generalizable approach provides a powerful new way to assess what populations may be on the verge of collapse. Predicting population collapse by monitoring key early warning signals in time-series data may highlight when interventions are needed. Here, the authors show that including information on phenotypic traits like body size can more accurately predict critical transitions than abundance data alone.
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Affiliation(s)
- Christopher F Clements
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich CH-8057, Switzerland
| | - Arpat Ozgul
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich CH-8057, Switzerland
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182
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183
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Torossian J, Kordas R, Helmuth B. Cross-Scale Approaches to Forecasting Biogeographic Responses to Climate Change. ADV ECOL RES 2016. [DOI: 10.1016/bs.aecr.2016.08.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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184
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Liu R, Chen P, Aihara K, Chen L. Identifying early-warning signals of critical transitions with strong noise by dynamical network markers. Sci Rep 2015; 5:17501. [PMID: 26647650 PMCID: PMC4673532 DOI: 10.1038/srep17501] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2015] [Accepted: 10/30/2015] [Indexed: 11/09/2022] Open
Abstract
Identifying early-warning signals of a critical transition for a complex system is difficult, especially when the target system is constantly perturbed by big noise, which makes the traditional methods fail due to the strong fluctuations of the observed data. In this work, we show that the critical transition is not traditional state-transition but probability distribution-transition when the noise is not sufficiently small, which, however, is a ubiquitous case in real systems. We present a model-free computational method to detect the warning signals before such transitions. The key idea behind is a strategy: “making big noise smaller” by a distribution-embedding scheme, which transforms the data from the observed state-variables with big noise to their distribution-variables with small noise, and thus makes the traditional criteria effective because of the significantly reduced fluctuations. Specifically, increasing the dimension of the observed data by moment expansion that changes the system from state-dynamics to probability distribution-dynamics, we derive new data in a higher-dimensional space but with much smaller noise. Then, we develop a criterion based on the dynamical network marker (DNM) to signal the impending critical transition using the transformed higher-dimensional data. We also demonstrate the effectiveness of our method in biological, ecological and financial systems.
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Affiliation(s)
- Rui Liu
- School of Mathematics, South China University of Technology, Guangzhou 510640, China
| | - Pei Chen
- School of Computer Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Kazuyuki Aihara
- Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, University of Tokyo, Tokyo 153-8505, Japan
| | - Luonan Chen
- Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, University of Tokyo, Tokyo 153-8505, Japan.,Key Laboratory of Systems Biology, Innovation Center for Cell Signaling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
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185
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Scheffer M, Carpenter SR, Dakos V, van Nes EH. Generic Indicators of Ecological Resilience: Inferring the Chance of a Critical Transition. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2015. [DOI: 10.1146/annurev-ecolsys-112414-054242] [Citation(s) in RCA: 256] [Impact Index Per Article: 28.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Marten Scheffer
- Department of Environmental Sciences, Wageningen University, 6700 AA Wageningen, The Netherlands;
| | - Stephen R. Carpenter
- Center for Limnology, University of Wisconsin–Madison, Madison, Wisconsin 53706;
| | - Vasilis Dakos
- Center for Adaptation to a Changing Environment, Institute of Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland;
| | - Egbert H. van Nes
- Department of Environmental Sciences, Wageningen University, 6700 AA Wageningen, The Netherlands;
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186
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Comparative Risk Assessment to Inform Adaptation Priorities for the Natural Environment: Observations from the First UK Climate Change Risk Assessment. CLIMATE 2015. [DOI: 10.3390/cli3040937] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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187
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Zhang X, Kuehn C, Hallerberg S. Predictability of critical transitions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:052905. [PMID: 26651760 DOI: 10.1103/physreve.92.052905] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2015] [Indexed: 06/05/2023]
Abstract
Critical transitions in multistable systems have been discussed as models for a variety of phenomena ranging from the extinctions of species to socioeconomic changes and climate transitions between ice ages and warm ages. From bifurcation theory we can expect certain critical transitions to be preceded by a decreased recovery from external perturbations. The consequences of this critical slowing down have been observed as an increase in variance and autocorrelation prior to the transition. However, especially in the presence of noise, it is not clear whether these changes in observation variables are statistically relevant such that they could be used as indicators for critical transitions. In this contribution we investigate the predictability of critical transitions in conceptual models. We study the quadratic integrate-and-fire model and the van der Pol model under the influence of external noise. We focus especially on the statistical analysis of the success of predictions and the overall predictability of the system. The performance of different indicator variables turns out to be dependent on the specific model under study and the conditions of accessing it. Furthermore, we study the influence of the magnitude of transitions on the predictive performance.
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Affiliation(s)
- Xiaozhu Zhang
- Network Dynamics, Max Planck Institute for Dynamics and Self-Organization, 37077 Göttingen, Germany
| | - Christian Kuehn
- Institute for Analysis and Scientific Computing, Vienna University of Technology, 1040 Wien, Austria
| | - Sarah Hallerberg
- Network Dynamics, Max Planck Institute for Dynamics and Self-Organization, 37077 Göttingen, Germany
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188
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Frossard V, Saussereau B, Perasso A, Gillet F. What is the robustness of early warning signals to temporal aggregation? Front Ecol Evol 2015. [DOI: 10.3389/fevo.2015.00112] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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189
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D’Souza K, Epureanu BI, Pascual M. Forecasting Bifurcations from Large Perturbation Recoveries in Feedback Ecosystems. PLoS One 2015; 10:e0137779. [PMID: 26356503 PMCID: PMC4565629 DOI: 10.1371/journal.pone.0137779] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Accepted: 08/21/2015] [Indexed: 11/18/2022] Open
Abstract
Forecasting bifurcations such as critical transitions is an active research area of relevance to the management and preservation of ecological systems. In particular, anticipating the distance to critical transitions remains a challenge, together with predicting the state of the system after these transitions are breached. In this work, a new model-less method is presented that addresses both these issues based on monitoring recoveries from large perturbations. The approach uses data from recoveries of the system from at least two separate parameter values before the critical point, to predict both the bifurcation and the post-bifurcation dynamics. The proposed method is demonstrated, and its performance evaluated under different levels of measurement noise, with two ecological models that have been used extensively in previous studies of tipping points and alternative steady states. The first one considers the dynamics of vegetation under grazing; the second, those of macrophyte and phytoplankton in shallow lakes. Applications of the method to more complex situations are discussed together with the kinds of empirical data needed for its implementation.
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Affiliation(s)
- Kiran D’Souza
- Mechanical and Aerospace Engineering Department, The Ohio State University, Columbus, Ohio, United States of America
- * E-mail:
| | - Bogdan I. Epureanu
- Mechanical Engineering Department, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Mercedes Pascual
- Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, United States of America
- Santa Fe Institute, Santa Fe, New Mexico, United States of America
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190
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Bhowmick AR, Saha B, Chattopadhyay J, Ray S, Bhattacharya S. Cooperation in species: Interplay of population regulation and extinction through global population dynamics database. Ecol Modell 2015. [DOI: 10.1016/j.ecolmodel.2015.05.023] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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191
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Medvinsky AB, Adamovich BV, Chakraborty A, Lukyanova EV, Mikheyeva TM, Nurieva NI, Radchikova NP, Rusakov AV, Zhukova TV. Chaos far away from the edge of chaos: A recurrence quantification analysis of plankton time series. ECOLOGICAL COMPLEXITY 2015. [DOI: 10.1016/j.ecocom.2015.07.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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192
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Burthe SJ, Henrys PA, Mackay EB, Spears BM, Campbell R, Carvalho L, Dudley B, Gunn IDM, Johns DG, Maberly SC, May L, Newell MA, Wanless S, Winfield IJ, Thackeray SJ, Daunt F. Do early warning indicators consistently predict nonlinear change in long-term ecological data? J Appl Ecol 2015. [DOI: 10.1111/1365-2664.12519] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sarah J. Burthe
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Peter A. Henrys
- Centre for Ecology & Hydrology; Lancaster Environment Centre; Library Avenue Bailrigg Lancaster LA1 4AP UK
| | - Eleanor B. Mackay
- Centre for Ecology & Hydrology; Lancaster Environment Centre; Library Avenue Bailrigg Lancaster LA1 4AP UK
| | - Bryan M. Spears
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Ronald Campbell
- The Tweed Foundation; The Tweed Fish Conservancy Centre; Drygrange Steading Melrose Roxburghshire TD6 9DJ UK
| | - Laurence Carvalho
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Bernard Dudley
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Iain D. M. Gunn
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - David G. Johns
- Sir Alister Hardy Foundation for Ocean Science, The Laboratory; Citadel Hill; Plymouth PL1 2PB UK
| | - Stephen C. Maberly
- Centre for Ecology & Hydrology; Lancaster Environment Centre; Library Avenue Bailrigg Lancaster LA1 4AP UK
| | - Linda May
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Mark A. Newell
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Sarah Wanless
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
| | - Ian J. Winfield
- Centre for Ecology & Hydrology; Lancaster Environment Centre; Library Avenue Bailrigg Lancaster LA1 4AP UK
| | - Stephen J. Thackeray
- Centre for Ecology & Hydrology; Lancaster Environment Centre; Library Avenue Bailrigg Lancaster LA1 4AP UK
| | - Francis Daunt
- Centre for Ecology & Hydrology; Bush Estate; Penicuik Midlothian EH26 0QB UK
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193
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Kuehn C, Zschaler G, Gross T. Early warning signs for saddle-escape transitions in complex networks. Sci Rep 2015; 5:13190. [PMID: 26294271 PMCID: PMC4544003 DOI: 10.1038/srep13190] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Accepted: 04/01/2015] [Indexed: 11/24/2022] Open
Abstract
Many real world systems are at risk of undergoing critical transitions, leading to sudden qualitative and sometimes irreversible regime shifts. The development of early warning signals is recognized as a major challenge. Recent progress builds on a mathematical framework in which a real-world system is described by a low-dimensional equation system with a small number of key variables, where the critical transition often corresponds to a bifurcation. Here we show that in high-dimensional systems, containing many variables, we frequently encounter an additional non-bifurcative saddle-type mechanism leading to critical transitions. This generic class of transitions has been missed in the search for early-warnings up to now. In fact, the saddle-type mechanism also applies to low-dimensional systems with saddle-dynamics. Near a saddle a system moves slowly and the state may be perceived as stable over substantial time periods. We develop an early warning sign for the saddle-type transition. We illustrate our results in two network models and epidemiological data. This work thus establishes a connection from critical transitions to networks and an early warning sign for a new type of critical transition. In complex models and big data we anticipate that saddle-transitions will be encountered frequently in the future.
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Affiliation(s)
| | - Gerd Zschaler
- TNG Technology Consulting, 85774 Unterföhring, Germany
| | - Thilo Gross
- University of Bristol, Merchant Venturers School of Engineering, BS8 1TR Bristol, UK
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194
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Relation between stability and resilience determines the performance of early warning signals under different environmental drivers. Proc Natl Acad Sci U S A 2015. [PMID: 26216946 DOI: 10.1073/pnas.1418415112] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Shifting patterns of temporal fluctuations have been found to signal critical transitions in a variety of systems, from ecological communities to human physiology. However, failure of these early warning signals in some systems calls for a better understanding of their limitations. In particular, little is known about the generality of early warning signals in different deteriorating environments. In this study, we characterized how multiple environmental drivers influence the dynamics of laboratory yeast populations, which was previously shown to display alternative stable states [Dai et al., Science, 2012]. We observed that both the coefficient of variation and autocorrelation increased before population collapse in two slowly deteriorating environments, one with a rising death rate and the other one with decreasing nutrient availability. We compared the performance of early warning signals across multiple environments as "indicators for loss of resilience." We find that the varying performance is determined by how a system responds to changes in a specific driver, which can be captured by a relation between stability (recovery rate) and resilience (size of the basin of attraction). Furthermore, we demonstrate that the positive correlation between stability and resilience, as the essential assumption of indicators based on critical slowing down, can break down in this system when multiple environmental drivers are changed simultaneously. Our results suggest that the stability-resilience relation needs to be better understood for the application of early warning signals in different scenarios.
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195
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Benedetti-Cecchi L, Tamburello L, Maggi E, Bulleri F. Experimental Perturbations Modify the Performance of Early Warning Indicators of Regime Shift. Curr Biol 2015; 25:1867-72. [PMID: 26166776 DOI: 10.1016/j.cub.2015.05.035] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Revised: 04/11/2015] [Accepted: 05/15/2015] [Indexed: 11/22/2022]
Abstract
Ecosystems may shift abruptly between alternative states in response to environmental perturbations. Early warning indicators have been proposed to anticipate such regime shifts, but experimental field tests of their validity are rare. We exposed rocky intertidal algal canopies to a gradient of press perturbations and recorded the response of associated assemblages over 7 years. Reduced cover and biomass of algal canopies promoted the invasion of algal turfs, driving understory assemblages toward collapse upon total canopy removal. A dynamic model indicated the existence of a critical threshold separating the canopy- and turf-dominated states. We evaluated common indicators of regime shift as the system approached the threshold, including autocorrelation, SD, and skewness. These indicators captured changes in understory cover due to colonization of algal turfs. All indicators increased significantly as the system approached the critical threshold, in agreement with theoretical predictions. The performance of indicators changed when we superimposed a pulse disturbance on the press perturbation that amplified environmental noise. This treatment caused several experimental units to switch repeatedly between the canopy- and the turf-dominated state, resulting in a significant increase in overall variance of understory cover, a negligible effect on skewness and no effect on autocorrelation. Power analysis indicated that autocorrelation and SD were better suited at anticipating a regime shift under mild and strong fluctuations of the state variable, respectively. Our results suggest that regime shifts may be anticipated under a broad range of fluctuating conditions using the appropriate indicator.
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Affiliation(s)
| | - Laura Tamburello
- Department of Biology, University of Pisa, CoNISMa, Via Derna 1, 56126 Pisa, Italy
| | - Elena Maggi
- Department of Biology, University of Pisa, CoNISMa, Via Derna 1, 56126 Pisa, Italy
| | - Fabio Bulleri
- Department of Biology, University of Pisa, CoNISMa, Via Derna 1, 56126 Pisa, Italy
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196
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Seekell DA, Dakos V. Heteroskedasticity as a leading indicator of desertification in spatially explicit data. Ecol Evol 2015; 5:2185-92. [PMID: 26078855 PMCID: PMC4461420 DOI: 10.1002/ece3.1510] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Revised: 03/23/2015] [Accepted: 04/02/2015] [Indexed: 11/15/2022] Open
Abstract
Regime shifts are abrupt transitions between alternate ecosystem states including desertification in arid regions due to drought or overgrazing. Regime shifts may be preceded by statistical anomalies such as increased autocorrelation, indicating declining resilience and warning of an impending shift. Tests for conditional heteroskedasticity, a type of clustered variance, have proven powerful leading indicators for regime shifts in time series data, but an analogous indicator for spatial data has not been evaluated. A spatial analog for conditional heteroskedasticity might be especially useful in arid environments where spatial interactions are critical in structuring ecosystem pattern and process. We tested the efficacy of a test for spatial heteroskedasticity as a leading indicator of regime shifts with simulated data from spatially extended vegetation models with regular and scale-free patterning. These models simulate shifts from extensive vegetative cover to bare, desert-like conditions. The magnitude of spatial heteroskedasticity increased consistently as the modeled systems approached a regime shift from vegetated to desert state. Relative spatial autocorrelation, spatial heteroskedasticity increased earlier and more consistently. We conclude that tests for spatial heteroskedasticity can contribute to the growing toolbox of early warning indicators for regime shifts analyzed with spatially explicit data.
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Affiliation(s)
- David A Seekell
- Department of Environmental Sciences, University of Virginia Charlottesville, Virginia, 22904 ; Department of Ecology and Environmental Science, Umeå University 901 87, Umeå, Sweden
| | - Vasilis Dakos
- Integrative Ecology Group, Estación Biológica de Doñana, EBD- CSIC C/ Américo Vespucio S/N, E-41092, Sevilla, Spain
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197
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Clements CF, Drake JM, Griffiths JI, Ozgul A. Factors influencing the detectability of early warning signals of population collapse. Am Nat 2015; 186:50-8. [PMID: 26098338 DOI: 10.1086/681573] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The recent description of potentially generic early warning signals is a promising development that may help conservationists to anticipate a population's collapse prior to its occurrence. So far, the majority of such warning signals documented have been in highly controlled laboratory systems or in theoretical models. Data from wild populations, however, are typically restricted both temporally and spatially due to limited monitoring resources and intrinsic ecological heterogeneity-limitations that may affect the detectability of generic early warning signals, as they add additional stochasticity to population abundance estimates. Consequently, spatial and temporal subsampling may serve to either muffle or magnify early warning signals. Using a combination of theoretical models and analysis of experimental data, we evaluate the extent to which statistical warning signs are robust to data corruption.
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Affiliation(s)
- Christopher F Clements
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich CH-8057, Switzerland
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198
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Abstract
Transitions between regimes with radically different properties are ubiquitous in nature. Such transitions can occur either smoothly or in an abrupt and catastrophic fashion. Important examples of the latter can be found in ecology, climate sciences, and economics, to name a few, where regime shifts have catastrophic consequences that are mostly irreversible (e.g., desertification, coral reef collapses, and market crashes). Predicting and preventing these abrupt transitions remains a challenging and important task. Usually, simple deterministic equations are used to model and rationalize these complex situations. However, stochastic effects might have a profound effect. Here we use 1D and 2D spatially explicit models to show that intrinsic (demographic) stochasticity can alter deterministic predictions dramatically, especially in the presence of other realistic features such as limited mobility or spatial heterogeneity. In particular, these ingredients can alter the possibility of catastrophic shifts by giving rise to much smoother and easily reversible continuous ones. The ideas presented here can help further understand catastrophic shifts and contribute to the discussion about the possibility of preventing such shifts to minimize their disruptive ecological, economic, and societal consequences.
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Affiliation(s)
- Paula Villa Martín
- Departamento de Electromagnetismo y Física de la Materia, Facultad de Ciencias, Universidad de Granada, 18071 Granada, Spain
| | - Juan A Bonachela
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544-1003; and
| | - Simon A Levin
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544-1003; and
| | - Miguel A Muñoz
- Departamento de Electromagnetismo y Física de la Materia and Instituto Carlos I de Física Teórica y Computacional, Facultad de Ciencias, Universidad de Granada, 18071 Granada, Spain
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199
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Griffen BD, Norelli AP. Spatially variable habitat quality contributes to within-population variation in reproductive success. Ecol Evol 2015; 5:1474-83. [PMID: 25897386 PMCID: PMC4395176 DOI: 10.1002/ece3.1427] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2014] [Revised: 01/21/2015] [Accepted: 01/27/2015] [Indexed: 11/08/2022] Open
Abstract
Variation in habitat quality is common across terrestrial, freshwater, and marine habitats. We investigated how habitat quality influenced the reproductive potential of mud crabs across 30 oyster reefs that were degraded to different extents. We further coupled this field survey with a laboratory experiment designed to mechanistically determine the relationship between resource consumption and reproductive performance. We show a >10-fold difference in average reproductive potential for crabs across reefs of different quality. Calculated consumption rates for crabs in each reef, based on a type II functional response, suggest that differences in reproductive performance may be attributed to resource limitation in poor quality reefs. This conclusion is supported by results of our laboratory experiment where crabs fed a higher quality diet of abundant animal tissue had greater reproductive performance. Our results demonstrate that spatial variation in habitat quality can be a considerable contributor to within-population individual variation in reproductive success (i.e., demographic heterogeneity). This finding has important implications for assessing population extinction risk.
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Affiliation(s)
- Blaine D Griffen
- Department of Biological Sciences, University of South Carolina Columbia, South Carolina, 29208 ; Marine Science Program, University of South Carolina Columbia, South Carolina, 29208
| | - Alexandra P Norelli
- Marine Science Program, University of South Carolina Columbia, South Carolina, 29208
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200
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Resilience of alternative states in spatially extended ecosystems. PLoS One 2015; 10:e0116859. [PMID: 25714342 PMCID: PMC4340810 DOI: 10.1371/journal.pone.0116859] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Accepted: 12/15/2014] [Indexed: 11/21/2022] Open
Abstract
Alternative stable states in ecology have been well studied in isolated, well-mixed systems. However, in reality, most ecosystems exist on spatially extended landscapes. Applying existing theory from dynamic systems, we explore how such a spatial setting should be expected to affect ecological resilience. We focus on the effect of local disturbances, defining resilience as the size of the area of a strong local disturbance needed to trigger a shift. We show that in contrast to well-mixed systems, resilience in a homogeneous spatial setting does not decrease gradually as a bifurcation point is approached. Instead, as an environmental driver changes, the present dominant state remains virtually ‘indestructible’, until at a critical point (the Maxwell point) its resilience drops sharply in the sense that even a very local disturbance can cause a domino effect leading eventually to a landscape-wide shift to the alternative state. Close to this Maxwell point the travelling wave moves very slow. Under these conditions both states have a comparable resilience, allowing long transient co-occurrence of alternative states side-by-side, and also permanent co-existence if there are mild spatial barriers. Overall however, hysteresis may mostly disappear in a spatial context as one of both alternative states will always tend to be dominant. Our results imply that local restoration efforts on a homogeneous landscape will typically either fail or trigger a landscape-wide transition. For extensive biomes with alternative stable states, such as tundra, steppe and forest, our results imply that, as climatic change reduces the stability, the effect might be difficult to detect until a point where local disturbances inevitably induce a spatial cascade to the alternative state.
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