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Drain A, Thouin J, Wang L, Boeglin M, Pauly N, Nieves-Cordones M, Gaillard I, Véry AA, Sentenac H. Functional characterization and physiological roles of the single Shaker outward K + channel in Medicago truncatula. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:1249-1265. [PMID: 31958173 DOI: 10.1111/tpj.14697] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 11/29/2019] [Accepted: 12/13/2019] [Indexed: 06/10/2023]
Abstract
The model legume Medicago truncatula possesses a single outward Shaker K+ channel, whereas Arabidopsis thaliana possesses two channels of this type, named AtSKOR and AtGORK, with AtSKOR having been shown to play a major role in K+ secretion into the xylem sap in the root vasculature and with AtGORK being shown to mediate the efflux of K+ across the guard cell membrane, leading to stomatal closure. Here we show that the expression pattern of the single M. truncatula outward Shaker channel, which has been named MtGORK, includes the root vasculature, guard cells and root hairs. As shown by patch-clamp experiments on root hair protoplasts, besides the Shaker-type slowly activating outwardly rectifying K+ conductance encoded by MtGORK, a second K+ -permeable conductance, displaying fast activation and weak rectification, can be expressed by M. truncatula. A knock-out (KO) mutation resulting in an absence of MtGORK activity is shown to weakly reduce K+ translocation to shoots, and only in plants engaged in rhizobial symbiosis, but to strongly affect the control of stomatal aperture and transpirational water loss. In legumes, the early electrical signaling pathway triggered by Nod-factor perception is known to comprise a short transient depolarization of the root hair plasma membrane. In the absence of the functional expression of MtGORK, the rate of the membrane repolarization is found to be decreased by a factor of approximately two. This defect was without any consequence on infection thread development and nodule production in plants grown in vitro, but a decrease in nodule production was observed in plants grown in soil.
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Affiliation(s)
- Alice Drain
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Julien Thouin
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Limin Wang
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Martin Boeglin
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Nicolas Pauly
- Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, UMR 1355-7254 Institut Sophia Agrobiotech, Université Nice Sophia Antipolis, Sophia Antipolis, France
- Laboratoire des Interactions Plantes-Microorganismes, INRAE, CNRS, Université de Toulouse, Castanet-Tolosan, France
| | - Manuel Nieves-Cordones
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
- Departamento de Nutrición Vegetal, Centro de Edafología y Biología Aplicada del Segura-CSIC, Apartado de Correos 164, Murcia, 30100, Spain
| | - Isabelle Gaillard
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Anne-Aliénor Véry
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
| | - Hervé Sentenac
- Biochimie et Physiologie Moléculaire des Plantes, UMR BPMP, Univ Montpellier, CNRS, INRAE, Montpellier SupAgro, Montpellier, 34060, France
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152
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Ajeesh Krishna TP, Maharajan T, Victor Roch G, Ignacimuthu S, Antony Ceasar S. Structure, Function, Regulation and Phylogenetic Relationship of ZIP Family Transporters of Plants. FRONTIERS IN PLANT SCIENCE 2020; 11:662. [PMID: 32536933 PMCID: PMC7267038 DOI: 10.3389/fpls.2020.00662] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 04/29/2020] [Indexed: 05/24/2023]
Abstract
Zinc (Zn) is an essential micronutrient for plants and humans. Nearly 50% of the agriculture soils of world are Zn-deficient. The low availability of Zn reduces the yield and quality of the crops. The zinc-regulated, iron-regulated transporter-like proteins (ZIP) family and iron-regulated transporters (IRTs) are involved in cellular uptake of Zn, its intracellular trafficking and detoxification in plants. In addition to Zn, ZIP family transporters also transport other divalent metal cations (such as Cd2+, Fe2+, and Cu2+). ZIP transporters play a crucial role in biofortification of grains with Zn. Only a very limited information is available on structural features and mechanism of Zn transport of plant ZIP family transporters. In this article, we present a detailed account on structure, function, regulations and phylogenetic relationships of plant ZIP transporters. We give an insight to structure of plant ZIPs through homology modeling and multiple sequence alignment with Bordetella bronchiseptica ZIP (BbZIP) protein whose crystal structure has been solved recently. We also provide details on ZIP transporter genes identified and characterized in rice and other plants till date. Functional characterization of plant ZIP transporters will help for the better crop yield and human health in future.
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Affiliation(s)
- T. P. Ajeesh Krishna
- Division of Plant Biotechnology, Entomology Research Institute, Loyola College, University of Madras, Chennai, India
| | - T. Maharajan
- Division of Plant Biotechnology, Entomology Research Institute, Loyola College, University of Madras, Chennai, India
| | - G. Victor Roch
- Division of Plant Biotechnology, Entomology Research Institute, Loyola College, University of Madras, Chennai, India
| | | | - Stanislaus Antony Ceasar
- Division of Plant Biotechnology, Entomology Research Institute, Loyola College, University of Madras, Chennai, India
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153
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Enterococcus faecalis Manganese Exporter MntE Alleviates Manganese Toxicity and Is Required for Mouse Gastrointestinal Colonization. Infect Immun 2020; 88:IAI.00058-20. [PMID: 32229614 DOI: 10.1128/iai.00058-20] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 03/21/2020] [Indexed: 01/13/2023] Open
Abstract
Bacterial pathogens encounter a variety of nutritional environments in the human host, including nutrient metal restriction and overload. Uptake of manganese (Mn) is essential for Enterococcus faecalis growth and virulence; however, it is not known how this organism prevents Mn toxicity. In this study, we examine the role of the highly conserved MntE transporter in E. faecalis Mn homeostasis and virulence. We show that inactivation of mntE results in growth restriction in the presence of excess Mn, but not other metals, demonstrating its specific role in Mn detoxification. Upon growth in the presence of excess Mn, an mntE mutant accumulates intracellular Mn, iron (Fe), and magnesium (Mg), supporting a role for MntE in Mn and Fe export and a role for Mg in offsetting Mn toxicity. Growth of the mntE mutant in excess Fe also results in increased levels of intracellular Fe, but not Mn or Mg, providing further support for MntE in Fe efflux. Inactivation of mntE in the presence of excess iron also results in the upregulation of glycerol catabolic genes and enhanced biofilm growth, and addition of glycerol is sufficient to augment biofilm growth for both the mntE mutant and its wild-type parental strain, demonstrating that glycerol availability significantly enhances biofilm formation. Finally, we show that mntE contributes to colonization of the antibiotic-treated mouse gastrointestinal (GI) tract, suggesting that E. faecalis encounters excess Mn in this niche. Collectively, these findings demonstrate that the manganese exporter MntE plays a crucial role in E. faecalis metal homeostasis and virulence.
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154
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Rai H, Kawabata M. The Dynamics of Radio-Cesium in Soils and Mechanism of Cesium Uptake Into Higher Plants: Newly Elucidated Mechanism of Cesium Uptake Into Rice Plants. FRONTIERS IN PLANT SCIENCE 2020; 11:528. [PMID: 32477382 PMCID: PMC7237719 DOI: 10.3389/fpls.2020.00528] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 04/07/2020] [Indexed: 05/05/2023]
Abstract
Soil radio-cesium (Cs) contamination caused by nuclear accidents is a major public concern. In this review, we presented the behavior of radio-Cs in soils, the relationship between Cs+ and potassium (K) ion uptake from soils, and the Cs+ uptake model proposed previously. Finally, we introduced the newly elucidated mechanism of Cs+ uptake in rice plants and compared it with the previously proposed Cs+ uptake model. Cs is a trace element in soil. It is toxic to plants when absorbed at high concentrations, although this rarely occurs under normal environmental conditions. Nevertheless, radio-Cs released during nuclear weapon tests or nuclear power plant accidents is absorbed by plants, thus entering the food chain. As Cs+ strongly binds to the frayed edge sites of illitic clays in soil, it is hardly moved by the infiltration of rainwater. However, plants have a strong ability for inorganic ions uptake, causing re-diffusion of radio-Cs+ into ecosystems and radioactive contamination of food. It is hypothesized that Cs+ is absorbed by plants through the same mechanism implemented in K+ uptake. However, the dynamics of the two elements do not always coincide in their transition from soil to plants and inside the plants. A previously proposed model of Cs uptake by higher plants stated that Cs+ is absorbed through high affinity potassium (HAK) family of transporters and voltage-insensitive cation (VIC) channels. A knockout line of a HAK transporter gene (oshak1) in rice revealed that the HAK transporter OsHAK1 is the main route of Cs+ influx into rice plants, especially in low-potassium conditions. The K+ uptake rates did not differ greatly between the oshak1 and wildtype. On the surface of rice roots, potassium-transport systems other than OsHAK1 make little or no contribution to Cs+ uptake. It is almost certain that OsAKT1 does not mediate the Cs uptake. Under normal soil conditions, 80-90% of Cs uptake into the roots is mediated by OsHAK1 and the rest by VIC channels. Except for the difference between the contribution ratio of HAK and VIC channels in Cs uptake, these results are consistent with the conventional model.
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Affiliation(s)
- Hiroki Rai
- Department of Biological Production, Faculty of Bioresource Sciences, Akita Prefectural University, Akita, Japan
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155
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Jogawat A, Meena MK, Kundu A, Varma M, Vadassery J. Calcium channel CNGC19 mediates basal defense signaling to regulate colonization by Piriformospora indica in Arabidopsis roots. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2752-2768. [PMID: 31957790 PMCID: PMC7210775 DOI: 10.1093/jxb/eraa028] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Accepted: 01/16/2020] [Indexed: 05/20/2023]
Abstract
The activation of calcium signaling is a crucial event for perceiving environmental stress. Colonization by Piriformospora indica, a growth-promoting root endosymbiont, activates cytosolic Ca2+ in Arabidopsis roots. In this study, we examined the role and functional relevance of calcium channels responsible for Ca2+ fluxes. Expression profiling revealed that CYCLIC NUCLEOTIDE GATED CHANNEL 19 (CNGC19) is an early-activated gene, induced by unidentified components in P. indica cell-wall extract. Functional analysis showed that loss-of-function of CNGC19 resulted in growth inhibition by P.indica, due to increased colonization and loss of controlled fungal growth. The cngc19 mutant showed reduced elevation of cytosolic Ca2+ in response to P. indica cell-wall extract in comparison to the wild-type. Microbe-associated molecular pattern-triggered immunity was compromised in the cngc19 lines, as evidenced by unaltered callose deposition, reduced cis-(+)-12-oxo-phytodienoic acid, jasmonate, and jasmonoyl isoleucine levels, and down-regulation of jasmonate and other defense-related genes, which contributed to a shift towards a pathogenic response. Loss-of-function of CNGC19 resulted in an inability to modulate indole glucosinolate content during P. indica colonization. CNGC19-mediated basal immunity was dependent on the AtPep receptor, PEPR. CNGC19 was also crucial for P. indica-mediated suppression of AtPep-induced immunity. Our results thus demonstrate that Arabidopsis CNGC19 is an important Ca2+ channel that maintains a robust innate immunity and is crucial for growth-promotion signaling upon colonization by P. indica.
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Affiliation(s)
- Abhimanyu Jogawat
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Mukesh Kumar Meena
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Anish Kundu
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Mahendra Varma
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Jyothilakshmi Vadassery
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
- Correspondence:
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156
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Sheng H, Cong DL, Ju HY. Functional Characterization of ZmHAK1 Promoter and Its Regulatory Transcription Factors in Maize. Mol Biol 2020. [DOI: 10.1134/s0026893320030152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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157
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Abstract
Crop loss due to soil salinization is an increasing threat to agriculture worldwide. This review provides an overview of cellular and physiological mechanisms in plant responses to salt. We place cellular responses in a time- and tissue-dependent context in order to link them to observed phases in growth rate that occur in response to stress. Recent advances in phenotyping can now functionally or genetically link cellular signaling responses, ion transport, water management, and gene expression to growth, development, and survival. Halophytes, which are naturally salt-tolerant plants, are highlighted as success stories to learn from. We emphasize that (a) filling the major knowledge gaps in salt-induced signaling pathways, (b) increasing the spatial and temporal resolution of our knowledge of salt stress responses, (c) discovering and considering crop-specific responses, and (d) including halophytes in our comparative studies are all essential in order to take our approaches to increasing crop yields in saline soils to the next level.
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Affiliation(s)
- Eva van Zelm
- Laboratory of Plant Physiology, Wageningen University, 6700 AA Wageningen, The Netherlands;
| | - Yanxia Zhang
- Laboratory of Plant Physiology, Wageningen University, 6700 AA Wageningen, The Netherlands;
| | - Christa Testerink
- Laboratory of Plant Physiology, Wageningen University, 6700 AA Wageningen, The Netherlands;
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158
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Sellamuthu G, Jegadeeson V, Sajeevan RS, Rajakani R, Parthasarathy P, Raju K, Shabala L, Chen ZH, Zhou M, Sowdhamini R, Shabala S, Venkataraman G. Distinct Evolutionary Origins of Intron Retention Splicing Events in NHX1 Antiporter Transcripts Relate to Sequence Specific Distinctions in Oryza Species. FRONTIERS IN PLANT SCIENCE 2020; 11:267. [PMID: 32218795 PMCID: PMC7078337 DOI: 10.3389/fpls.2020.00267] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 02/20/2020] [Indexed: 05/30/2023]
Abstract
The genome of Asian cultivated rice (Oryza sativa L.) shows the presence of six organelle-specific and one plasma membrane (OsNHX1-7) NHX-type cation proton antiporters. Of these, vacuolar-localized OsNHX1 is extensively characterized. The genus Oryza consists of 27 species and 11 genome-types, with cultivated rice, diploid O. sativa, having an AA-type genome. Oryza NHX1 orthologous regions (gene organization, 5' upstream cis elements, amino acid residues/motifs) from closely related Oryza AA genomes cluster distinctly from NHX1 regions from more ancestral Oryza BB, FF and KKLL genomes. These sequence-specific distinctions also extend to two separate intron retention (IR) events involving Oryza NHX1 transcripts that occur at the 5' and 3' ends of the NHX1 transcripts. We demonstrate that the IR event involving the 5' UTR is present only in more recently evolved Oryza AA genomes while the IR event governing retention of the 13th intron of Oryza NHX1 (terminal intron) is more ancient in origin, also occurring in halophytic wild rice, Oryza coarctata (KKLL). We also report presence of a retro-copy of the OcNHX1 cDNA in the genome of O. coarctata (rOcNHX1). Preferential species and tissue specific up- or down-regulation of the correctly spliced NHX1 transcript/5' UTR/13th intron-retaining splice variants under salinity was observed. The implications of IR on NHX1 mRNA stability and ORF diversity in Oryza spp. is discussed.
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Affiliation(s)
| | - Vidya Jegadeeson
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai, India
| | - Radha Sivarajan Sajeevan
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India
| | - Raja Rajakani
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai, India
| | - Pavithra Parthasarathy
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai, India
| | - Kalaimani Raju
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai, India
| | - Lana Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS, Australia
| | - Zhong-Hua Chen
- School of Science and Health, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS, Australia
| | - Ramanathan Sowdhamini
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS, Australia
| | - Gayatri Venkataraman
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai, India
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159
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Zhang Z, Chen Y, Zhang J, Ma X, Li Y, Li M, Wang D, Kang M, Wu H, Yang Y, Olson MS, DiFazio SP, Wan D, Liu J, Ma T. Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica). Mol Ecol Resour 2020; 20. [PMID: 32034885 DOI: 10.1111/1755-0998.13142] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 01/21/2020] [Accepted: 02/03/2020] [Indexed: 12/30/2022]
Abstract
Populus euphratica is well adapted to extreme desert environments and is an important model species for elucidating the mechanisms of abiotic stress resistance in trees. The current assembly of P. euphratica genome is highly fragmented with many gaps and errors, thereby impeding downstream applications. Here, we report an improved chromosome-level reference genome of P. euphratica (v2.0) using single-molecule sequencing and chromosome conformation capture (Hi-C) technologies. Relative to the previous reference genome, our assembly represents a nearly 60-fold improvement in contiguity, with a scaffold N50 size of 28.59 Mb. Using this genome, we have found that extensive expansion of Gypsy elements in P. euphratica led to its rapid increase in genome size compared to any other Salicaceae species studied to date, and potentially contributed to adaptive divergence driven by insertions near genes involved in stress tolerance. We also detected a wide range of unique structural rearrangements in P. euphratica, including 2,549 translocations, 454 inversions, 121 tandem and 14 segmental duplications. Several key genes likely to be involved in tolerance to abiotic stress were identified within these regions. This high-quality genome represents a valuable resource for poplar breeding and genetic improvement in the future, as well as comparative genomic analysis with other Salicaceae species.
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Affiliation(s)
- Zhiyang Zhang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Yang Chen
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Junlin Zhang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Xinzhi Ma
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Yiling Li
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Mengmeng Li
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Deyan Wang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Minghui Kang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Haolin Wu
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
| | - Yongzhi Yang
- State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology & College of Life Sciences, Lanzhou University, Lanzhou, China
| | - Matthew S Olson
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
| | - Stephen P DiFazio
- Department of Biology, West Virginia University, Morgantown, WV, USA
| | - Dongshi Wan
- State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology & College of Life Sciences, Lanzhou University, Lanzhou, China
| | - Jianquan Liu
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China.,State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology & College of Life Sciences, Lanzhou University, Lanzhou, China
| | - Tao Ma
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
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160
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Genome-wide identification of CNGC genes in Chinese jujube (Ziziphus jujuba Mill.) and ZjCNGC2 mediated signalling cascades in response to cold stress. BMC Genomics 2020; 21:191. [PMID: 32122304 PMCID: PMC7053155 DOI: 10.1186/s12864-020-6601-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 02/20/2020] [Indexed: 01/01/2023] Open
Abstract
BACKGROUNDS Cyclic nucleotide gated channels (CNGCs) play multifaceted roles in plant physiological processes, especially with respect to signalling processes, plant development, and responses to environmental stresses. However, little information is known about the CNGC family in the large cosmopolitan family Rhamnaceae, which has strong tolerance to biotic and abiotic stresses. RESULTS In the current study, a total of 15 ZjCNGCs which located on 7 chromosomes were firstly identified in Chinese jujube (Ziziphus jujuba Mill.), the most important species of Rhamnaceae in terms of economic and ecological values. Phylogenetic analysis showed that these ZjCNGCs could be classified into four groups, ZjCNGC12 belonged to group IVA, and ZjCNGC13, 14, 15 belonged to group IVB. In addition, the paralogous and orthologous homology duplication of ZjCNGC15 occurred during the evolutionary process. The characteristics of ZjCNGCs regarding to exon-intron numbers and post-translational modifications showed diversified structures and functions. Motif composition and protein sequence analysis revealed that the phosphate-binding cassette and hinge regions were conserved among ZjCNGCs. Prediction of the cis-acting regulatory elements and expression profiles by real-time quantitative PCR analysis showed that some of the ZjCNGCs responded to environmental changes, especially ZjCNGC2, which was significantly downregulated in response to cold stress, and ZjCNGC4 was highly induced in response to cold, salt and alkaline stresses. ZjCNGC13 and 14 were highly induced in the phytoplasma-resistant cultivar and downregulated in the susceptible cultivar. Furthermore, ZjCNGC2 could be regulated by cAMP treatment, microtubule changes and interact with ZjMAPKK4, which suggested that cAMP and microtubule might play important roles in ZjCNGC2 mediated ZjMAPKK4 signalling transduction involved in cold stress. CONCLUSIONS The identification and classification analysis of ZjCNGCs were firstly reported, and some key individual ZjCNGCs might play essential roles in the response to biotic and abiotic stresses, especially ZjCNGC2 mediated ZjMAPKK4 signalling transduction involved in cold stress. This systematic analysis could provide important information for further functional characterization of ZjCNGCs with the aim of breeding stress-resistant cultivars.
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161
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Villette J, Cuéllar T, Verdeil JL, Delrot S, Gaillard I. Grapevine Potassium Nutrition and Fruit Quality in the Context of Climate Change. FRONTIERS IN PLANT SCIENCE 2020; 11:123. [PMID: 32174933 PMCID: PMC7054452 DOI: 10.3389/fpls.2020.00123] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Accepted: 01/28/2020] [Indexed: 06/01/2023]
Abstract
Potassium (K+) nutrition is of relevant interest for winegrowers because it influences grapevine growth, berry composition, as well as must and wine quality. Indeed, wine quality strongly depends on berry composition at harvest. However, K+ content of grape berries increased steadily over the last decades, in part due to climate change. Currently, the properties and qualities of many fruits are also impacted by environment. In grapevine, this disturbs berry properties resulting in unbalanced wines with poor organoleptic quality and low acidity. This requires a better understanding of the molecular basis of K+ accumulation and its control along grape berry development. This mini-review summarizes our current knowledge on K+ nutrition in relation with fruit quality in the context of a changing environment.
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Affiliation(s)
- Jérémy Villette
- BPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France
| | - Teresa Cuéllar
- CIRAD, UMR AGAP, Univ Montpellier, INRA, Montpellier SupAgro, Montpellier, France
| | - Jean-Luc Verdeil
- CIRAD, UMR AGAP, Univ Montpellier, INRA, Montpellier SupAgro, Montpellier, France
| | - Serge Delrot
- EGFV, Bordeaux Sciences Agro, INRAE, Université de Bordeaux, ISVV, Villenave d’Ornon, France
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162
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Khatiwada B, Hasan MT, Sun A, Kamath KS, Mirzaei M, Sunna A, Nevalainen H. Probing the Role of the Chloroplasts in Heavy Metal Tolerance and Accumulation in Euglena gracilis. Microorganisms 2020; 8:E115. [PMID: 31947612 PMCID: PMC7023027 DOI: 10.3390/microorganisms8010115] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 01/11/2020] [Accepted: 01/12/2020] [Indexed: 12/02/2022] Open
Abstract
The E. gracilis Zm-strain lacking chloroplasts, characterized in this study, was compared with the earlier assessed wild type Z-strain to explore the role of chloroplasts in heavy metal accumulation and tolerance. Comparison of the minimum inhibitory concentration (MIC) values indicated that both strains tolerated similar concentrations of mercury (Hg) and lead (Pb), but cadmium (Cd) tolerance of the Z-strain was twice that of the Zm-strain. The ability of the Zm-strain to accumulate Hg was higher compared to the Z-strain, indicating the existence of a Hg transportation and accumulation mechanism not depending on the presence of chloroplasts. Transmission electron microscopy (TEM) showed maximum accumulation of Hg in the cytosol of the Zm-strain and highest accumulation of Cd in the chloroplasts of the Z-strain indicating a difference in the ability of the two strains to deposit heavy metals in the cell. The highly abundant heavy metal transporter MTP2 in the Z-strain may have a role in Cd transportation to the chloroplasts. A multidrug resistance-associated protein highly increased in abundance in the Zm-strain could be a potential Hg transporter to either cytosol or mitochondria. Overall, the chloroplasts appear to have major role in the tolerance and accumulation of Cd in E. gracilis.
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Affiliation(s)
- Bishal Khatiwada
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
| | - Mafruha T. Hasan
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
| | - Angela Sun
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
| | - Karthik Shantharam Kamath
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
- Australian Proteome Analysis Facility, Macquarie University, Sydney, NSW 2109, Australia
| | - Mehdi Mirzaei
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
- Australian Proteome Analysis Facility, Macquarie University, Sydney, NSW 2109, Australia
| | - Anwar Sunna
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
| | - Helena Nevalainen
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia; (B.K.); (M.T.H.); (A.S.); (K.S.K.); (M.M.)
- Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney, NSW 2109, Australia
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Feng X, Wang Y, Zhang N, Wu Z, Zeng Q, Wu J, Wu X, Wang L, Zhang J, Qi Y. Genome-wide systematic characterization of the HAK/KUP/KT gene family and its expression profile during plant growth and in response to low-K + stress in Saccharum. BMC PLANT BIOLOGY 2020; 20:20. [PMID: 31931714 PMCID: PMC6958797 DOI: 10.1186/s12870-019-2227-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Accepted: 12/30/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND Plant genomes contain a large number of HAK/KUP/KT transporters, which play important roles in potassium uptake and translocation, osmotic potential regulation, salt tolerance, root morphogenesis and plant development. Potassium deficiency in the soil of a sugarcane planting area is serious. However, the HAK/KUP/KT gene family remains to be characterized in sugarcane (Saccharum). RESULTS In this study, 30 HAK/KUP/KT genes were identified in Saccharum spontaneum. Phylogenetics, duplication events, gene structures and expression patterns were analyzed. Phylogenetic analysis of the HAK/KUP/KT genes from 15 representative plants showed that this gene family is divided into four groups (clades I-IV). Both ancient whole-genome duplication (WGD) and recent gene duplication contributed to the expansion of the HAK/KUP/KT gene family. Nonsynonymous to synonymous substitution ratio (Ka/Ks) analysis showed that purifying selection was the main force driving the evolution of HAK/KUP/KT genes. The divergence time of the HAK/KUP/KT gene family was estimated to range from 134.8 to 233.7 Mya based on Ks analysis, suggesting that it is an ancient gene family in plants. Gene structure analysis showed that the HAK/KUP/KT genes were accompanied by intron gain/loss in the process of evolution. RNA-seq data analysis demonstrated that the HAK/KUP/KT genes from clades II and III were mainly constitutively expressed in various tissues, while most genes from clades I and IV had no or very low expression in the tested tissues at different developmental stages. The expression of SsHAK1 and SsHAK21 was upregulated in response to low-K+ stress. Yeast functional complementation analysis revealed that SsHAK1 and SsHAK21 could rescue K+ uptake in a yeast mutant. CONCLUSIONS This study provided insights into the evolutionary history of HAK/KUP/KT genes. HAK7/9/18 were mainly expressed in the upper photosynthetic zone and mature zone of the stem. HAK7/9/18/25 were regulated by sunlight. SsHAK1 and SsHAK21 played important roles in mediating potassium acquisition under limited K+ supply. Our results provide valuable information and key candidate genes for further studies on the function of HAK/KUP/KT genes in Saccharum.
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Affiliation(s)
- Xiaomin Feng
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Yongjun Wang
- Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China
| | - Nannan Zhang
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Zilin Wu
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Qiaoying Zeng
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Jiayun Wu
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Xiaobin Wu
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
| | - Lei Wang
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
| | - Jisen Zhang
- Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China
| | - Yongwen Qi
- Guangdong Key Lab of Sugarcane Improvement & Biorefinery, Guangdong Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou, 510316 China
- Guangzhou Guansheng Breeding Research Institute, Guangzhou, 511453 China
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Tang RJ, Luan M, Wang C, Lhamo D, Yang Y, Zhao FG, Lan WZ, Fu AG, Luan S. Plant Membrane Transport Research in the Post-genomic Era. PLANT COMMUNICATIONS 2020; 1:100013. [PMID: 33404541 PMCID: PMC7747983 DOI: 10.1016/j.xplc.2019.100013] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 11/14/2019] [Accepted: 12/06/2019] [Indexed: 05/17/2023]
Abstract
Membrane transport processes are indispensable for many aspects of plant physiology including mineral nutrition, solute storage, cell metabolism, cell signaling, osmoregulation, cell growth, and stress responses. Completion of genome sequencing in diverse plant species and the development of multiple genomic tools have marked a new era in understanding plant membrane transport at the mechanistic level. Genes coding for a galaxy of pumps, channels, and carriers that facilitate various membrane transport processes have been identified while multiple approaches are developed to dissect the physiological roles as well as to define the transport capacities of these transport systems. Furthermore, signaling networks dictating the membrane transport processes are established to fully understand the regulatory mechanisms. Here, we review recent research progress in the discovery and characterization of the components in plant membrane transport that take advantage of plant genomic resources and other experimental tools. We also provide our perspectives for future studies in the field.
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Affiliation(s)
- Ren-Jie Tang
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Mingda Luan
- College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Chao Wang
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Dhondup Lhamo
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Yang Yang
- Nanjing University–Nanjing Forestry University Joint Institute for Plant Molecular Biology, College of Life Sciences, Nanjing University, Nanjing 210093, China
| | - Fu-Geng Zhao
- Nanjing University–Nanjing Forestry University Joint Institute for Plant Molecular Biology, College of Life Sciences, Nanjing University, Nanjing 210093, China
| | - Wen-Zhi Lan
- Nanjing University–Nanjing Forestry University Joint Institute for Plant Molecular Biology, College of Life Sciences, Nanjing University, Nanjing 210093, China
| | - Ai-Gen Fu
- College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
- Corresponding author
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165
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Tanveer M, Shabala S. Neurotransmitters in Signalling and Adaptation to Salinity Stress in Plants. NEUROTRANSMITTERS IN PLANT SIGNALING AND COMMUNICATION 2020. [DOI: 10.1007/978-3-030-54478-2_3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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166
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Huang L, Jiang Q, Wu J, An L, Zhou Z, Wong C, Wu M, Yu H, Gan Y. Zinc finger protein 5 (ZFP5) associates with ethylene signaling to regulate the phosphate and potassium deficiency-induced root hair development in Arabidopsis. PLANT MOLECULAR BIOLOGY 2020; 102:143-158. [PMID: 31782079 DOI: 10.1007/s11103-019-00937-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 11/25/2019] [Indexed: 05/22/2023]
Abstract
Zinc finger protein transcription factor ZFP5 positively regulates root hair elongation in response to Pi and potassium deficiency by mainly activating the expression of EIN2 in Arabidopsis. Phosphate (Pi) and potassium (K+) are major plant nutrients required for plant growth and development, and plants respond to low-nutrient conditions via metabolic and morphology changes. The C2H2 transcription factor ZFP5 is a key regulator of trichome and root hair development in Arabidopsis. However, its role in regulating root hair development under nutrient deprivations remains unknown. Here, we show that Pi and potassium deficiency could not restore the short root hair phenotype of zfp5 mutant and ZFP5 RNAi lines to wild type level. The deprivation of either of these nutrients also induced the expression of ZFP5 and the activity of an ethylene reporter, pEBS:GUS. The significant reduction of root hair length in ein2-1 and ein3-1 as compared to wild-type under Pi and potassium deficiency supports the involvement of ethylene in root hair elongation. Furthermore, the application of 1-aminocyclopropane-1-carboxylic acid (ACC) significantly enhanced the expression level of ZFP5 while the application of 2-aminoethoxyvinyl glycine (AVG) had the opposite effect when either Pi or potassium was deprived. Further experiments reveal that ZFP5 mainly regulates transcription of ETHYLENE INSENSITIVE 2 (EIN2) to control deficiency-mediated root hair development through ethylene signaling. Generally, these results suggest that ZFP5 regulates root hair elongation by interacting with ethylene signaling mainly through regulates the expression of EIN2 in response to Pi and potassium deficiency in Arabidopsis.
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Affiliation(s)
- Linli Huang
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 866 Yuhangtang Rd, Hangzhou, 310058, China
| | - Qining Jiang
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 866 Yuhangtang Rd, Hangzhou, 310058, China
| | - Junyu Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 866 Yuhangtang Rd, Hangzhou, 310058, China
| | - Lijun An
- College of Life Sciences, Northwest A&F University, 22 Xinong Rd, Yangling, 712100, Shaanxi Province, China
| | - Zhongjing Zhou
- Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, 198 Shiqiao Rd, Hangzhou, 310021, China
| | - ChuiEng Wong
- Department of Biological Sciences and Temasek Life Sciences Laboratory, National University of Singapore, Singapore, 117543, Singapore
| | - Minjie Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 866 Yuhangtang Rd, Hangzhou, 310058, China
| | - Hao Yu
- Department of Biological Sciences and Temasek Life Sciences Laboratory, National University of Singapore, Singapore, 117543, Singapore
| | - Yinbo Gan
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, 866 Yuhangtang Rd, Hangzhou, 310058, China.
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167
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Zhang M, Liang X, Wang L, Cao Y, Song W, Shi J, Lai J, Jiang C. A HAK family Na + transporter confers natural variation of salt tolerance in maize. NATURE PLANTS 2019; 5:1297-1308. [PMID: 31819228 DOI: 10.1038/s41477-019-0565-y] [Citation(s) in RCA: 109] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 10/30/2019] [Indexed: 05/08/2023]
Abstract
Excessive sodium ion (Na+) concentrations in cultivated land alter crop yield and quality worldwide. Previous studies have shown that shoot Na+ exclusion is essential in most crops for salt tolerance. Here, we show by a genome-wide association study that Zea may L. Na+ content 2 (ZmNC2), encoding the HAK family ion transporter ZmHAK4, confers the natural variation of shoot Na+ exclusion and salt tolerance in maize. The ZmHAK4 locus accounts for ~11% of the shoot Na+ variation, and a natural ZmHAK4-deficient allele displays a decreased ZmHAK4 expression level and an increased shoot Na+ content. ZmHAK4 is preferentially expressed in the root stele and encodes a novel membrane-localized Na+-selective transporter that mediates shoot Na+ exclusion, probably by retrieving Na+ from xylem sap. ZmHAK4 orthologues were identified in other plant species, and the orthologues of ZmHAK4 in rice and wheat show identical expression patterns and ion transport properties, suggesting that ZmHAK4 orthologues mediate an evolutionarily conserved salt-tolerance mechanism. Finally, we show that ZmHAK4 and ZmHKT1 (a HKT1 family Na+-selective transporter) confer distinct roles in promoting shoot Na+ exclusion and salt tolerance, indicating that the combination of the favourable alleles of ZmHKT1 and ZmHAK4 can facilitate the development of salt-tolerant maize varieties.
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Affiliation(s)
- Ming Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Xiaoyan Liang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Limin Wang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Yibo Cao
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Weibin Song
- Laboratory of Agrobiotechnology and National Maize Improvement Center of China, Department of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Junpeng Shi
- Laboratory of Agrobiotechnology and National Maize Improvement Center of China, Department of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Jinsheng Lai
- Laboratory of Agrobiotechnology and National Maize Improvement Center of China, Department of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing, China
| | - Caifu Jiang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing, China.
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Naser-Khdour S, Minh BQ, Zhang W, Stone EA, Lanfear R. The Prevalence and Impact of Model Violations in Phylogenetic Analysis. Genome Biol Evol 2019; 11:3341-3352. [PMID: 31536115 PMCID: PMC6893154 DOI: 10.1093/gbe/evz193] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/03/2019] [Indexed: 12/24/2022] Open
Abstract
In phylogenetic inference, we commonly use models of substitution which assume that sequence evolution is stationary, reversible, and homogeneous (SRH). Although the use of such models is often criticized, the extent of SRH violations and their effects on phylogenetic inference of tree topologies and edge lengths are not well understood. Here, we introduce and apply the maximal matched-pairs tests of homogeneity to assess the scale and impact of SRH model violations on 3,572 partitions from 35 published phylogenetic data sets. We show that roughly one-quarter of all the partitions we analyzed (23.5%) reject the SRH assumptions, and that for 25% of data sets, tree topologies inferred from all partitions differ significantly from topologies inferred using the subset of partitions that do not reject the SRH assumptions. This proportion increases when comparing trees inferred using the subset of partitions that rejects the SRH assumptions, to those inferred from partitions that do not reject the SRH assumptions. These results suggest that the extent and effects of model violation in phylogenetics may be substantial. They highlight the importance of testing for model violations and possibly excluding partitions that violate models prior to tree reconstruction. Our results also suggest that further effort in developing models that do not require SRH assumptions could lead to large improvements in the accuracy of phylogenomic inference. The scripts necessary to perform the analysis are available in https://github.com/roblanf/SRHtests, and the new tests we describe are available as a new option in IQ-TREE (http://www.iqtree.org).
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Affiliation(s)
- Suha Naser-Khdour
- Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Bui Quang Minh
- Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
- Research School of Computer Science, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Wenqi Zhang
- Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Eric A Stone
- Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Robert Lanfear
- Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
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169
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Zhang C, Wang X, Liu X, Fan Y, Zhang Y, Zhou X, Li W. A Novel ' Candidatus Liberibacter asiaticus'-Encoded Sec-Dependent Secretory Protein Suppresses Programmed Cell Death in Nicotiana benthamiana. Int J Mol Sci 2019; 20:E5802. [PMID: 31752214 PMCID: PMC6888338 DOI: 10.3390/ijms20225802] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 11/12/2019] [Accepted: 11/15/2019] [Indexed: 12/28/2022] Open
Abstract
'Candidatus Liberibacter asiaticus' (CLas) is one of the causal agents of citrus Huanglongbing (HLB), a bacterial disease of citrus trees that greatly reduces fruit yield and quality. CLas strains produce an array of currently uncharacterized Sec-dependent secretory proteins. In this study, the conserved chromosomally encoded protein CLIBASIA_03875 was identified as a novel Sec-dependent secreted protein. We show that CLIBASIA_03875 contains a putative Sec- secretion signal peptide (SP), a 29 amino acid residue located at the N-terminus, with a mature protein (m3875) of 22 amino acids found to localize in multiple subcellular components of the leaf epidermal cells of Nicotiana benthamiana. When overexpressed via a Potato virus X (PVX)-based expression vector in N. benthamiana, m3875 suppressed programmed cell death (PCD) and the H2O2 accumulation triggered by the pro-apoptotic mouse protein BAX and the Phytophthora infestans elicitin INF1. Overexpression also resulted in a phenotype of dwarfing, leaf deformation and mosaics, suggesting that m3875 has roles in plant immune response, growth, and development. Substitution mutagenesis of the charged amino acid (D7, R9, R11, and K22) with alanine within m3875 did not recover the phenotypes for PCD and normal growth. In addition, the transiently overexpressed m3875 regulated the transcriptional levels of N. benthamiana orthologs of CNGCs (cyclic nucleotide-gated channels), BI-1 (Bax-inhibitor 1), and WRKY33 that are involved in plant defense mechanisms. To our knowledge, m3875 is the first PCD suppressor identified from CLas. Studying the function of this protein provides insight as to how CLas attenuates the host immune responses to proliferate and cause Huanglongbing disease in citrus plants.
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Affiliation(s)
- Chao Zhang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100094, China;
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (Y.F.); (Y.Z.)
| | - Xuefeng Wang
- Citrus Research Institute, Southwest University, Chongqing 400712, China;
| | - Xuelu Liu
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (Y.F.); (Y.Z.)
- Citrus Research Institute, Southwest University, Chongqing 400712, China;
| | - Yanyan Fan
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (Y.F.); (Y.Z.)
- College of Life Science, Shandong Normal University, Jinan 250014, China
| | - Yongqiang Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (Y.F.); (Y.Z.)
| | - Xueping Zhou
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100094, China;
| | - Weimin Li
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (Y.F.); (Y.Z.)
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Locascio A, Marqués MC, García-Martínez G, Corratgé-Faillie C, Andrés-Colás N, Rubio L, Fernández JA, Véry AA, Mulet JM, Yenush L. BCL2-ASSOCIATED ATHANOGENE4 Regulates the KAT1 Potassium Channel and Controls Stomatal Movement. PLANT PHYSIOLOGY 2019; 181:1277-1294. [PMID: 31451552 PMCID: PMC6836829 DOI: 10.1104/pp.19.00224] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 08/05/2019] [Indexed: 05/18/2023]
Abstract
Potassium (K+) is a key monovalent cation necessary for multiple aspects of cell growth and survival. In plants, this cation also plays a key role in the control of stomatal movement. KAT1 and its homolog KAT2 are the main inward rectifying channels present in guard cells, mediating K+ influx into these cells, resulting in stomatal opening. To gain further insight into the regulation of these channels, we performed a split-ubiquitin protein-protein interaction screen searching for KAT1 interactors in Arabidopsis (Arabidopsis thaliana). We characterized one of these candidates, BCL2-ASSOCIATED ATHANOGENE4 (BAG4), in detail using biochemical and genetic approaches to confirm this interaction and its effect on KAT1 activity. We show that BAG4 improves KAT1-mediated K+ transport in two heterologous systems and provide evidence that in plants, BAG4 interacts with KAT1 and favors the arrival of KAT1 at the plasma membrane. Importantly, lines lacking or overexpressing the BAG4 gene show altered KAT1 plasma membrane accumulation and alterations in stomatal movement. Our data allowed us to identify a KAT1 regulator and define a potential target for the plant BAG family. The identification of physiologically relevant regulators of K+ channels will aid in the design of approaches that may impact drought tolerance and pathogen susceptibility.
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Affiliation(s)
- Antonella Locascio
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Maria Carmen Marqués
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Guillermo García-Martínez
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Claire Corratgé-Faillie
- Biochimie et Physiologie Moléculaire des Plantes, Université Montpellier, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique (INRA), SupAgro Montpellier, Campus SupAgro-INRA, 34060 Montpellier Cedex 2, France
| | - Nuria Andrés-Colás
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Lourdes Rubio
- Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos S/N, 29010 Málaga, Spain
| | - José Antonio Fernández
- Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos S/N, 29010 Málaga, Spain
| | - Anne-Aliénor Véry
- Biochimie et Physiologie Moléculaire des Plantes, Université Montpellier, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique (INRA), SupAgro Montpellier, Campus SupAgro-INRA, 34060 Montpellier Cedex 2, France
| | - José Miguel Mulet
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Lynne Yenush
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
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Zeng H, Zhang X, Ding M, Zhang X, Zhu Y. Transcriptome profiles of soybean leaves and roots in response to zinc deficiency. PHYSIOLOGIA PLANTARUM 2019; 167:330-351. [PMID: 30536844 DOI: 10.1111/ppl.12894] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2018] [Revised: 11/25/2018] [Accepted: 12/03/2018] [Indexed: 05/27/2023]
Abstract
Zinc (Zn) deficiency is a widespread agricultural problem in arable soils of the whole world. However, the molecular mechanisms underlying Zn-deficiency response are largely unknown. Here, we analyzed the transcriptomic profilings of soybean leaves and roots in response to Zn deficiency through Illumina's high-throughput RNA sequencing in order to understand the molecular basis of Zn-deficiency response in the plants. A total of 614 and 1011 gene loci were found to be differentially expressed in leaves and roots, respectively, and 88 loci were commonly found in both leaves and roots. Twelve differentially expressed genes (DEGs) were randomly selected for validation by quantitative reverse transcription polymerase chain reaction, and their fold changes were similar to those of RNA-seq. Gene ontology enrichment analysis showed that ion transport, nicotianamine (NA) biosynthetic process and queuosine biosynthetic process were enriched in the upregulated genes, while oxidation-reduction process and defense response were enriched in the downregulated genes. Among the DEGs, 20 DEGs are potentially involved in Zn homeostasis, including seven ZRT, IRT-related protein (ZIP) transporter genes, three NA synthase genes, and seven metallothionein genes; 40 DEGs are possibly involved in diverse hormonal signals such as auxin, cytokinin, ethylene and gibberellin; nine DEGs are putatively involved in calcium signaling; 85 DEGs are putative transcription factor genes. Nine DEGs were found to contain zinc-deficiency-response element in their promoter regions. These results could provide comprehensive insights into the soybean response to Zn deficiency and will be helpful for further elucidation of the molecular mechanisms of Zn-deficiency response and Zn-deficiency tolerance in plants.
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Affiliation(s)
- Houqing Zeng
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China
| | - Xin Zhang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China
| | - Ming Ding
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Xiajun Zhang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China
| | - Yiyong Zhu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
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172
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Wang W, Wang J, Wei Q, Li B, Zhong X, Hu T, Hu H, Bao C. Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn. Sci Rep 2019; 9:14544. [PMID: 31601970 PMCID: PMC6787205 DOI: 10.1038/s41598-019-51190-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Accepted: 09/26/2019] [Indexed: 12/11/2022] Open
Abstract
Circular RNA (circRNA) is a newly discovered non-coding RNA, which play significant roles in the function and transcriptional regulation of microRNA. To date, in Chinese cabbage, the functional characteristic of circRNAs in response to calcium deficiency-induced tip-burn have not been reported. In this study, 730 circRNAs were isolated from Chinese cabbage leaves, of which 23 and 22 were differentially expressed in different calcium deficiency stages compared with the control. Forty-six host genes of the differentially expressed circRNAs were identified, and one circRNA was found to act as miRNAs sponges. Based on the functional analysis of host genes and target mRNAs of the corresponding miRNAs, the identified circRNAs might participated in response to stimulus, electron carrier activity, ATPase activity, cell wall metabolism, transcription factors and plant hormone signal transduction. ABF2, a positive regulator of the abiotic stress response in the abscisic acid (ABA) pathway, may play a role in calcium deficiency tolerance through a circRNA regulatory pathway. Correspondingly, the concentration of ABA is also increased during the Ca2+ deficiency stress. Our results suggest that circRNAs participate in a broad range of biological processes and physiological functions in the response to calcium deficiency-induced tip-burn and provide a basis for further studies of the biological roles that circRNAs play in the plant stress response.
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Affiliation(s)
- Wuhong Wang
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Jinglei Wang
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Qingzhen Wei
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Biyuan Li
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Xinmin Zhong
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Tianhua Hu
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Haijiao Hu
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Chonglai Bao
- Institute of Vegetable Research, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
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173
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Duszyn M, Świeżawska B, Szmidt-Jaworska A, Jaworski K. Cyclic nucleotide gated channels (CNGCs) in plant signalling-Current knowledge and perspectives. JOURNAL OF PLANT PHYSIOLOGY 2019; 241:153035. [PMID: 31491601 DOI: 10.1016/j.jplph.2019.153035] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 07/29/2019] [Accepted: 07/30/2019] [Indexed: 05/22/2023]
Abstract
Cell signaling is an evolutionarily conserved mechanism that responds and adapts to various internal and external factors. Generally, a signal is mediated by various signaling molecules and is transferred to a cascade of effector proteins. To date, there is significant evidence that cyclic nucleotides (cNMPs), e.g., adenosine 3',5'-cyclic monophosphate (cAMP) and guanosine 3',5'-cyclic monophosphate (cGMP), may represent important elements of many signaling pathways in plants. However, in contrast to the impressive progress made in understanding cyclic nucleotide signaling in mammalian hosts, only few studies have investigated this topic in plants. Existing evidence indicates that cNMPs participate in growth and developmental processes, as well as the response to various stresses. Once synthesized by adenylyl or guanylyl cyclases, these signals are transduced by acting through a number of cellular effectors. The regulatory effects of cNMPs in eukaryotes can be mediated via various downstream effector proteins, such as protein kinases, Exchange Protein directly Activated by cAMP (EPAC), and Cyclic Nucleotide-Gated ion Channels (CNGC). These proteins sense changes in intracellular cNMP levels and regulate numerous cellular responses. Moreover, the amplitude of cNMP levels and the duration of its signal in the cell is also governed by phosphodiesterases (PDEs), enzymes that are responsible for the breakdown of cNMPs. Data collected in recent years strongly suggest that cyclic nucleotide gated channels are the main cNMP effectors in plant cells. These channels are important cellular switches that transduce changes in intracellular concentrations of cyclic nucleotides into changes in membrane potential and ion concentrations. Structurally, these channels belong to the superfamily of pore-loop cation channels. In this review, we provide an overview of the molecular properties of CNGC structure, regulation and ion selectivity, and subcellular localization, as well as describing the signal transduction pathways in which these channels are involved. We will also summarize recent insights into the role of CNGC proteins in plant growth, development and response to stressors.
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Affiliation(s)
- Maria Duszyn
- Nicolaus Copernicus University, Faculty of Biology and Environmental Protection, Chair of Plant Physiology and Biotechnology, Lwowska St. 1, PL 87-100 Torun, Poland.
| | - Brygida Świeżawska
- Nicolaus Copernicus University, Faculty of Biology and Environmental Protection, Chair of Plant Physiology and Biotechnology, Lwowska St. 1, PL 87-100 Torun, Poland.
| | - Adriana Szmidt-Jaworska
- Nicolaus Copernicus University, Faculty of Biology and Environmental Protection, Chair of Plant Physiology and Biotechnology, Lwowska St. 1, PL 87-100 Torun, Poland.
| | - Krzysztof Jaworski
- Nicolaus Copernicus University, Faculty of Biology and Environmental Protection, Chair of Plant Physiology and Biotechnology, Lwowska St. 1, PL 87-100 Torun, Poland.
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174
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Akhtar M, Yousaf S, Sarwar N, Hussain S. Zinc biofortification of cereals-role of phosphorus and other impediments in alkaline calcareous soils. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2019; 41:2365-2379. [PMID: 30903431 DOI: 10.1007/s10653-019-00279-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Accepted: 03/08/2019] [Indexed: 05/17/2023]
Abstract
Alkaline calcareous soils are deficient in plant nutrients; in particular, phosphorus (P) and zinc (Zn) are least available; their inorganic fertilizers are generally applied to meet the demand of crops. The applied nutrients react with soil constituents as well as with each other, resulting in lower plant uptake. Phosphorus availability is usually deterred due to lime content, while Zn availability is largely linked with alkalinity of the soil. The present manuscript critically discusses the factors associated with physicochemical properties of soil and other interactions in soil-plant system which contribute to the nutrients supply from soil, and affect productivity and quality attributes of cereals. Appropriate measures may possibly lessen the severity of nutritional disorder in cereal and optimize P and Zn concentrations in grain. Foliar Zn spray is found to escape most of the soil reactions; thus, Zn bioavailability is higher either through increase in grain Zn or through decrease in phytate content. The reactivity of nutrients prior to its uptake is deemed as major impediments in Zn biofortification of cereals. The article addresses physiological limitation of plants to accumulate grain Zn and the ways to achieve biofortification in cereals, while molecular mechanism explains how it affects nutritional quality of cereals. Moreover, it highlights the desirable measures for enhancing Zn bioavailability, e.g., manipulation of genetic makeup for efficient nutrient uptake/translocation, and also elucidates agronomic measures that help facilitate Zn supply in soil for plant accumulation.
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Affiliation(s)
- Muhammad Akhtar
- Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Pakistan
| | - Sundas Yousaf
- Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Pakistan.
| | - Nadeem Sarwar
- Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Pakistan
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan.
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175
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Xie X, Hu W, Fan X, Chen H, Tang M. Interactions Between Phosphorus, Zinc, and Iron Homeostasis in Nonmycorrhizal and Mycorrhizal Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:1172. [PMID: 31616454 PMCID: PMC6775243 DOI: 10.3389/fpls.2019.01172] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2019] [Accepted: 08/27/2019] [Indexed: 05/16/2023]
Abstract
Phosphorus (P), zinc (Zn), and iron (Fe) are three essential elements for plant survival, and severe deficiencies in these nutrients lead to growth retardation and crop yield reduction. This review synthesizes recent progress on how plants coordinate the acquisition and signaling of Pi, Zn, and Fe from surrounding environments and which genes are involved in these Pi-Zn-Fe interactions with the aim of better understanding of the cross-talk between these macronutrient and micronutrient homeostasis in plants. In addition, identification of genes important for interactions between Pi, Zn, and/or Fe transport and signaling is a useful target for breeders for improvement in plant nutrient acquisition. Furthermore, to understand these processes in arbuscular mycorrhizal plants, the preliminary examination of interactions between Pi, Zn, and Fe homeostasis in some relevant crop species has been performed at the physiological level and is summarized in this article. In conclusion, the development of integrative study of cross-talks between Pi, Zn, and Fe signaling pathway in mycorrhizal plants will be essential for sustainable agriculture all around the world.
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Affiliation(s)
- Xianan Xie
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources (South China Agricultural University), Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Wentao Hu
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources (South China Agricultural University), Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Xiaoning Fan
- Department of Plant Pathology, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Hui Chen
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources (South China Agricultural University), Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Ming Tang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources (South China Agricultural University), Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
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176
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Brost C, Studtrucker T, Reimann R, Denninger P, Czekalla J, Krebs M, Fabry B, Schumacher K, Grossmann G, Dietrich P. Multiple cyclic nucleotide-gated channels coordinate calcium oscillations and polar growth of root hairs. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 99:910-923. [PMID: 31033043 DOI: 10.1111/tpj.14371] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 01/18/2019] [Accepted: 04/08/2019] [Indexed: 05/04/2023]
Abstract
Calcium gradients underlie polarization in eukaryotic cells. In plants, a tip-focused Ca2+ -gradient is fundamental for rapid and unidirectional cell expansion during epidermal root hair development. Here we report that three members of the cyclic nucleotide-gated channel family are required to maintain cytosolic Ca2+ oscillations and the normal growth of root hairs. CNGC6, CNGC9 and CNGC14 were expressed in root hairs, with CNGC9 displaying the highest root hair specificity. In individual channel mutants, morphological defects including root hair swelling and branching, as well as bursting, were observed. The developmental phenotypes were amplified in the three cngc double mutant combinations. Finally, cngc6/9/14 triple mutants only developed bulging trichoblasts and could not form normal root hair protrusions because they burst after the transition to the rapid growth phase. Prior to developmental defects, single and double mutants showed increasingly disturbed patterns of Ca2+ oscillations. We conclude that CNGC6, CNGC9 and CNGC14 fulfill partially but not fully redundant functions in generating and maintaining tip-focused Ca2+ oscillations, which are fundamental for proper root hair growth and polarity. Furthermore, the results suggest that these calmodulin-binding and Ca2+ -permeable channels organize a robust tip-focused oscillatory calcium gradient, which is not essential for root hair initiation but is required to control the integrity of the root hair after the transition to the rapid growth phase. Our findings also show that root hairs possess a large ability to compensate calcium-signaling defects, and add new players to the regulatory network, which coordinates cell wall properties and cell expansion during polar root hair growth.
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Affiliation(s)
- Christa Brost
- Molecular Plant Physiology, Friedrich-Alexander Universität Erlangen-Nürnberg, Staudtstrasse 5, 91058, Erlangen, Germany
| | - Tanja Studtrucker
- Molecular Plant Physiology, Friedrich-Alexander Universität Erlangen-Nürnberg, Staudtstrasse 5, 91058, Erlangen, Germany
| | - Ronny Reimann
- Molecular Plant Physiology, Friedrich-Alexander Universität Erlangen-Nürnberg, Staudtstrasse 5, 91058, Erlangen, Germany
| | - Philipp Denninger
- CellNetworks Cluster of Excellence and Centre for Organismal Studies, Universität Heidelberg, Im Neuenheimer Feld 230, 69120, Heidelberg, Germany
| | - Jennifer Czekalla
- Molecular Plant Physiology, Friedrich-Alexander Universität Erlangen-Nürnberg, Staudtstrasse 5, 91058, Erlangen, Germany
| | - Melanie Krebs
- Plant Developmental Biology, Centre for Organismal Studies, Universität Heidelberg, Im Neuenheimer Feld 230, 69120, Heidelberg, Germany
| | - Ben Fabry
- Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, Henkestrasse 91, 91052, Erlangen, Germany
| | - Karin Schumacher
- Plant Developmental Biology, Centre for Organismal Studies, Universität Heidelberg, Im Neuenheimer Feld 230, 69120, Heidelberg, Germany
| | - Guido Grossmann
- CellNetworks Cluster of Excellence and Centre for Organismal Studies, Universität Heidelberg, Im Neuenheimer Feld 230, 69120, Heidelberg, Germany
| | - Petra Dietrich
- Molecular Plant Physiology, Friedrich-Alexander Universität Erlangen-Nürnberg, Staudtstrasse 5, 91058, Erlangen, Germany
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177
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Feng H, Tang Q, Cai J, Xu B, Xu G, Yu L. Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance. PLANTA 2019; 250:549-561. [PMID: 31119363 DOI: 10.1007/s00425-019-03194-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 05/16/2019] [Indexed: 05/27/2023]
Abstract
OsHAK16 mediates K uptake and root-to-shoot translocation in a broad range of external K concentrations, thereby contributing to the maintenance of K homeostasis and salt tolerance in the rice shoot. The HAK/KUP/KT transporters have been widely associated with potassium (K) transport across membranes in both microbes and plants. Here, we report the physiological function of OsHAK16, a member belonging to the HAK/KUP/KT family in rice (Oryza sativa L.). Transcriptional expression of OsHAK16 was up-regulated by K deficiency or salt stress. OsHAK16 is localized at the plasma membrane. OsHAK16 knockout (KO) dramatically reduced root K net uptake rate and growth at both 0.1 mM and 1 mM K supplies, while OsHAK16 overexpression (OX) increased total K uptake and growth only at 0.1 mM K level. OsHAK16-KO decreased the rate of rubidium (Rb) uptake and translocation compared to WT at both 0.2 mM and 1 mM Rb levels. OsHAK16 disruption decreased while its overexpression increased K concentration in root slightly but in shoot remarkably. The relative distribution of total K between shoot and root decreased by 30% in OsHAK16-KO lines and increased by 30% in its OX lines compared to WT. OsHAK16-KO diminished K uptake and K/Na ratio, while OsHAK16-OX improved K uptake and translocation from root to shoot, resulting in increased sensitivity and tolerance to salt stress, respectively. Expression of OsHAK16 enhanced the growth of high salt-sensitive yeast mutant by increasing its K but no Na content. Taking all these together, we conclude that OsHAK16 plays crucial roles in maintaining K homeostasis and salt tolerance in rice shoot.
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Affiliation(s)
- Huimin Feng
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
- MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing, 210095, China
| | - Qiang Tang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jin Cai
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Benchao Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China
- MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ling Yu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095, China.
- MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing, 210095, China.
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178
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Meena MK, Prajapati R, Krishna D, Divakaran K, Pandey Y, Reichelt M, Mathew M, Boland W, Mithöfer A, Vadassery J. The Ca 2+ Channel CNGC19 Regulates Arabidopsis Defense Against Spodoptera Herbivory. THE PLANT CELL 2019; 31:1539-1562. [PMID: 31076540 PMCID: PMC6635850 DOI: 10.1105/tpc.19.00057] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 04/18/2019] [Accepted: 05/07/2019] [Indexed: 05/18/2023]
Abstract
Cellular calcium elevation is an important signal used by plants for recognition and signaling of environmental stress. Perception of the generalist insect, Spodoptera litura, by Arabidopsis (Arabidopsis thaliana) activates cytosolic Ca2+ elevation, which triggers downstream defense. However, not all the Ca2+ channels generating the signal have been identified, nor are their modes of action known. We report on a rapidly activated, leaf vasculature- and plasma membrane-localized, CYCLIC NUCLEOTIDE GATED CHANNEL19 (CNGC19), which activates herbivory-induced Ca2+ flux and plant defense. Loss of CNGC19 function results in decreased herbivory defense. The cngc19 mutant shows aberrant and attenuated intravascular Ca2+ fluxes. CNGC19 is a Ca2+-permeable channel, as hyperpolarization of CNGC19-expressing Xenopus oocytes in the presence of both cyclic adenosine monophosphate and Ca2+ results in Ca2+ influx. Breakdown of Ca2+-based defense in cngc19 mutants leads to a decrease in herbivory-induced jasmonoyl-l-isoleucine biosynthesis and expression of JA responsive genes. The cngc19 mutants are deficient in aliphatic glucosinolate accumulation and hyperaccumulate its precursor, methionine. CNGC19 modulates aliphatic glucosinolate biosynthesis in tandem with BRANCHED-CHAIN AMINO ACID TRANSAMINASE4, which is involved in the chain elongation pathway of Met-derived glucosinolates. Furthermore, CNGC19 interacts with herbivory-induced CALMODULIN2 in planta. Together, our work reveals a key mechanistic role for the Ca2+ channel CNGC19 in the recognition of herbivory and the activation of defense signaling.
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Affiliation(s)
- Mukesh Kumar Meena
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Ramgopal Prajapati
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Deepthi Krishna
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Keerthi Divakaran
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India
| | - Yogesh Pandey
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India
| | - Michael Reichelt
- Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany
| | - M.K. Mathew
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India
| | - Wilhelm Boland
- Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany
| | - Axel Mithöfer
- Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany
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179
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Favreau B, Denis M, Ployet R, Mounet F, Peireira da Silva H, Franceschini L, Laclau JP, Labate C, Carrer H. Distinct leaf transcriptomic response of water deficient Eucalyptus grandis submitted to potassium and sodium fertilization. PLoS One 2019; 14:e0218528. [PMID: 31220144 PMCID: PMC6586347 DOI: 10.1371/journal.pone.0218528] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 06/04/2019] [Indexed: 01/06/2023] Open
Abstract
While potassium fertilization increases growth yield in Brazilian eucalyptus plantations, it could also increase water requirements, making trees more vulnerable to drought. Sodium fertilization, which has been shown to promote eucalyptus growth compared to K-deficient trees, could partially mitigate this adverse effect of potassium. However, little is known about the influence of K and Na fertilization on the tree metabolic response to water deficit. The aim of the present study was thus to analyze the transcriptome of leaves sampled from Eucalyptus grandis trees subjected to 37% rainfall reduction, and fertilized with potassium (K), sodium (Na), compared to control trees (C). The multifactorial experiment was set up in a field with a throughfall exclusion system. Transcriptomic analysis was performed on leaves from two-year-old trees, and data analyzed using multifactorial statistical analysis and weighted gene co-expression network analysis (WGCNA). Significant sets of genes were seen to respond to rainfall reduction, in interaction with K or Na fertilization, or to fertilization only (regardless of the water supply regime). The genes were involved in stress signaling, primary and secondary metabolism, secondary cell wall formation and photosynthetic activity. Our focus on key genes related to cation transporters and aquaporins highlighted specific regulation of ion homeostasis, and plant adjustment to water deficit. While water availability significantly affects the transcriptomic response of eucalyptus species, this study points out that the transcriptomic response is highly dependent on the fertilization regime. Our study is based on the first large-scale field trial in a tropical region, specifically designed to study the interaction between water availability and nutrition in eucalyptus. To our knowledge, this is the first global transcriptomic analysis to compare the influence of K and Na fertilization on tree adaptive traits in water deficit conditions.
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Affiliation(s)
- Bénédicte Favreau
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Université de Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Marie Denis
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Université de Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Raphael Ployet
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Castanet-Tolosan, France
| | - Fabien Mounet
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Castanet-Tolosan, France
| | - Hana Peireira da Silva
- Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, São Paulo, Brazil
| | - Livia Franceschini
- Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, São Paulo, Brazil
| | | | - Carlos Labate
- Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, São Paulo, Brazil
| | - Helaine Carrer
- Department of Biological Sciences, Luiz de Queiroz College of Agriculture, University of São Paulo, São Paulo, Brazil
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180
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Qin YJ, Wu WH, Wang Y. ZmHAK5 and ZmHAK1 function in K + uptake and distribution in maize under low K + conditions. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2019; 61:691-705. [PMID: 30548401 DOI: 10.1111/jipb.12756] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 12/03/2018] [Indexed: 05/27/2023]
Abstract
Potassium (K+ ) is an essential macronutrient for plant growth and development. Transporters from the KT/HAK/KUP family play crucial roles in K+ homeostasis and cell growth in various plant species. However, their physiological roles in maize are still unknown. In this study, we cloned ZmHAK5 and ZmHAK1 and investigated their functions in maize (Zea mays L.). In situ hybridization showed that ZmHAK5 was mainly expressed in roots, especially in the epidermis, cortex, and vascular bundle. ZmHAK5 was characterized as a high-affinity K+ transporter. Loss of function of ZmHAK5 led to defective K+ uptake in maize, under low K+ conditions, whereas ZmHAK5-overexpressing plants showed increased K+ uptake activity and improved growth. ZmHAK1 was upregulated under low K+ stress, as revealed by RT-qPCR. ZmHAK1 mediated K+ uptake when heterologously expressed in yeast, but its transport activity was weaker than that of ZmHAK5. Overexpression of ZmHAK1 in maize significantly affected K+ distribution in shoots, leading to chlorosis in older leaves. These findings indicate that ZmHAK5 and ZmHAK1 play distinct roles in K+ homeostasis in maize, functioning in K+ uptake and K+ distribution, respectively. Genetic manipulation of ZmHAK5 may represent a feasible way to improve K+ utilization efficiency in maize.
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Affiliation(s)
- Ya-Juan Qin
- State Key Laboratory of Plant Physiology and Biochemistry (SKLPPB), College of Biological Sciences, China Agricultural University, Beijing 100193, China
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing 100193, China
| | - Wei-Hua Wu
- State Key Laboratory of Plant Physiology and Biochemistry (SKLPPB), College of Biological Sciences, China Agricultural University, Beijing 100193, China
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing 100193, China
| | - Yi Wang
- State Key Laboratory of Plant Physiology and Biochemistry (SKLPPB), College of Biological Sciences, China Agricultural University, Beijing 100193, China
- Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing 100193, China
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181
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Philippe F, Verdu I, Morère-Le Paven MC, Limami AM, Planchet E. Involvement of Medicago truncatula glutamate receptor-like channels in nitric oxide production under short-term water deficit stress. JOURNAL OF PLANT PHYSIOLOGY 2019; 236:1-6. [PMID: 30836205 DOI: 10.1016/j.jplph.2019.02.010] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2018] [Revised: 02/14/2019] [Accepted: 02/15/2019] [Indexed: 05/25/2023]
Abstract
Early stages of plant development are highly susceptible to environmental cues, and seedlings have to develop sophisticated mechanisms to sense and respond to abiotic stresses. We have previously identified that abscisic acid (ABA), nitric oxide (NO) and modulation of nitrogen metabolism are involved in adaptive responses in Medicago truncatula seedlings under water deficit stress. Here, we investigated whether glutamate receptor-like channels (GLRs) played a role in the developmental physiological processes of Medicago seedlings during post-germination after a short-term water deficit stress. Twenty-nine independent MtGLR genes have been identified and then divided into four clades following a phylogenetic analysis; seventeen of them exhibited specific domains which are characteristic of animal ionotropic glutamate receptors. Under drought stress, ABA-induced NO accumulation was significantly reduced in presence of a GLR competitive antagonist, suggesting that this water deficit-induced endogenous NO production was mediated through a MtGLR-dependent pathway. Water deficit-induced inhibition of embryo axis elongation was strongly reduced whereas loss of water content was alleviated when MtGLRs were inhibited. These results suggest that glutamate receptors-like channels are required, through their involvement in NO production, in adaptive responses under short-term water-deficit stress during Medicago seedling establishment.
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Affiliation(s)
- Florian Philippe
- IRHS, Université d'Angers, INRA, Agrocampus-Ouest, SFR 4207 QuaSaV, 49071, Beaucouzé, France
| | - Isabelle Verdu
- IRHS, Université d'Angers, INRA, Agrocampus-Ouest, SFR 4207 QuaSaV, 49071, Beaucouzé, France
| | | | - Anis M Limami
- IRHS, Université d'Angers, INRA, Agrocampus-Ouest, SFR 4207 QuaSaV, 49071, Beaucouzé, France
| | - Elisabeth Planchet
- IRHS, Université d'Angers, INRA, Agrocampus-Ouest, SFR 4207 QuaSaV, 49071, Beaucouzé, France.
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182
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Song Z, Wu X, Gao Y, Cui X, Jiao F, Chen X, Li Y. Genome-wide analysis of the HAK potassium transporter gene family reveals asymmetrical evolution in tobacco ( Nicotiana tabacum). Genome 2019; 62:267-278. [PMID: 30865850 DOI: 10.1139/gen-2018-0187] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Being an essential mineral nutrient, potassium (K+) plays numerous important roles in plant growth and development and determines the yield and quality of crop products. The cellular level of K+ is controlled to a large extent by the K+ transporter, which belongs to the KT/HAK/KUP (HAK) family. However, little is known about these genes in tobacco. In this study, we surveyed the tobacco genome and identified 41 putative NtHAK genes (NtHAKS1-NtHAKS21 and NtHAKT1-NtHAKT20). Investigation of the cis-elements in upstream regions of these NtHAK genes suggests that members of this family respond to environmental cues and phytohormones. Expression data mining reveals that NtHAK genes showed clear sub-genome dominance. In all, these results will provide molecular insights into K+ transporter research in tobacco.
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Affiliation(s)
- Zhongbang Song
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
| | - Xingfu Wu
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
| | - Yulong Gao
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
| | - Xiang Cui
- c College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China
| | - Fangchan Jiao
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
| | - Xuejun Chen
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
| | - Yongping Li
- a Yunnan Academy of Tobacco Agricultural Sciences, Kunming, Yunnan 650021, China
- b National Center for Tobacco Gene Engineering, Kunming, Yunnan 650021, China
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183
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Wang Q, Guan C, Wang P, Ma Q, Bao AK, Zhang JL, Wang SM. The Effect of AtHKT1;1 or AtSOS1 Mutation on the Expressions of Na⁺ or K⁺ Transporter Genes and Ion Homeostasis in Arabidopsis thaliana under Salt Stress. Int J Mol Sci 2019; 20:E1085. [PMID: 30832374 PMCID: PMC6429264 DOI: 10.3390/ijms20051085] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Revised: 02/21/2019] [Accepted: 02/23/2019] [Indexed: 01/21/2023] Open
Abstract
HKT1 and SOS1 are two key Na⁺ transporters that modulate salt tolerance in plants. Although much is known about the respective functions of HKT1 and SOS1 under salt conditions, few studies have examined the effects of HKT1 and SOS1 mutations on the expression of other important Na⁺ and K⁺ transporter genes. This study investigated the physiological parameters and expression profiles of AtHKT1;1, AtSOS1, AtHAK5, AtAKT1, AtSKOR, AtNHX1, and AtAVP1 in wild-type (WT) and athkt1;1 and atsos1 mutants of Arabidopsis thaliana under 25 mM NaCl. We found that AtSOS1 mutation induced a significant decrease in transcripts of AtHKT1;1 (by 56⁻62% at 6⁻24 h), AtSKOR (by 36⁻78% at 6⁻24 h), and AtAKT1 (by 31⁻53% at 6⁻24 h) in the roots compared with WT. This led to an increase in Na⁺ accumulation in the roots, a decrease in K⁺ uptake and transportation, and finally resulted in suppression of plant growth. AtHKT1;1 loss induced a 39⁻76% (6⁻24 h) decrease and a 27⁻32% (6⁻24 h) increase in transcripts of AtSKOR and AtHAK5, respectively, in the roots compared with WT. At the same time, 25 mM NaCl decreased the net selective transport capacity for K⁺ over Na⁺ by 92% in the athkt1;1 roots compared with the WT roots. Consequently, Na⁺ was loaded into the xylem and delivered to the shoots, whereas K⁺ transport was restricted. The results indicate that AtHKT1;1 and AtSOS1 not only mediate Na⁺ transport but also control ion uptake and the spatial distribution of Na⁺ and K⁺ by cooperatively regulating the expression levels of relevant Na⁺ and K⁺ transporter genes, ultimately regulating plant growth under salt stress.
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Affiliation(s)
- Qian Wang
- Guizhou Institute of Prataculture, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China.
| | - Chao Guan
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
| | - Pei Wang
- Institution of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610041, China.
| | - Qing Ma
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
| | - Ai-Ke Bao
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
| | - Jin-Lin Zhang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
| | - Suo-Min Wang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
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184
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Li Q, Yang S, Ren J, Ye X, jiang X, Liu Z. Genome-wide identification and functional analysis of the cyclic nucleotide-gated channel gene family in Chinese cabbage. 3 Biotech 2019; 9:114. [PMID: 30863698 DOI: 10.1007/s13205-019-1647-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Accepted: 02/21/2019] [Indexed: 10/27/2022] Open
Abstract
Cyclic nucleotide-gated channels (CNGCs) are a class of nonselective cationic channels that are widely found in animals and plants. Plant CNGCs participate in numerous biological functions that vary from development to stress tolerance. Most CNGC genes have been identified in plant genomes, but no such comprehensive study has yet been conducted on Chinese cabbage. In this study, thirty BrCNGC genes were identified, divided into five groups, and used for evolutionary analysis. We assigned names of all individual CNGC members on the basis of phylogenetic relationship with A. thaliana CNGCs. All BrCNGC genes were randomly distributed on chromosomes, and the A08 chromosome did not carry any CNGC gene. The CNGC genes of Chinese cabbage and A. thaliana from the same group displayed similar conserved motifs and gene structures. Especially the closer the homology, the higher the similarity. Quantitative expression analysis showed that most of the CNGC genes were expressed under four stresses, indicating that they play a key role in the stress response of Chinese cabbage. Expression patterns of 12 BrCNGC in the roots, stems, leaves, flowers, and siliques showed that BrCNGC8 and BrCNGC16 were specifically expressed only in flowers but not in other parts. This study lays a theoretical foundation for future research on the function of the CNGC gene family in Chinese cabbage.
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185
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Ghori NH, Ghori T, Hayat MQ, Imadi SR, Gul A, Altay V, Ozturk M. Heavy metal stress and responses in plants. INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND TECHNOLOGY 2019; 16:1807-1828. [PMID: 0 DOI: 10.1007/s13762-019-02215-8] [Citation(s) in RCA: 261] [Impact Index Per Article: 52.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Revised: 12/29/2018] [Accepted: 01/05/2019] [Indexed: 05/24/2023]
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186
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He Y, Yang B, He Y, Zhan C, Cheng Y, Zhang J, Zhang H, Cheng J, Wang Z. A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 97:1089-1104. [PMID: 30537381 PMCID: PMC6850641 DOI: 10.1111/tpj.14181] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Revised: 11/05/2018] [Accepted: 11/27/2018] [Indexed: 05/22/2023]
Abstract
Seed germination is a complex trait determined by both quantitative trait loci (QTLs) and environmental factors and also their interactions. In this study, we mapped one major QTLqSE3 for seed germination and seedling establishment under salinity stress in rice. To understand the molecular basis of this QTL, we isolated qSE3 by map-based cloning and found that it encodes a K+ transporter gene, OsHAK21. The expression of qSE3 was significantly upregulated by salinity stress in germinating seeds. Physiological analysis suggested that qSE3 significantly increased K+ and Na+ uptake in germinating seeds under salinity stress, resulting in increased abscisic acid (ABA) biosynthesis and activated ABA signaling responses. Furthermore, qSE3 significantly decreased the H2 O2 level in germinating seeds under salinity stress. All of these seed physiological changes modulated by qSE3 might contribute to seed germination and seedling establishment under salinity stress. Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a HAP3 haplotype of qSE3 that was positively correlated with seed germination under salinity stress. This study provides important insights into the roles of qSE3 in seed germination and seedling establishment under salinity stress and facilitates the practical use of qSE3 in rice breeding.
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Affiliation(s)
- Yongqi He
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Bin Yang
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Ying He
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Chengfang Zhan
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Yanhao Cheng
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Jiahui Zhang
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Hongsheng Zhang
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Jinping Cheng
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
| | - Zhoufei Wang
- The Laboratory of Seed Science and TechnologyState Key Laboratory of Crop Genetics and Germplasm EnhancementJiangsu Collaborative Innovation Center for Modern Crop ProductionNanjing Agricultural UniversityNanjing210095People's Republic of China
- The Laboratory of Seed Science and TechnologyGuangdong Key Laboratory of Plant Molecular BreedingState Key Laboratory for Conservation and Utilization of Subtropical Agro‐BioresourcesSouth China Agricultural UniversityGuangzhou510642People's Republic of China
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187
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Nawaz Z, Kakar KU, Ullah R, Yu S, Zhang J, Shu QY, Ren XL. Genome-wide identification, evolution and expression analysis of cyclic nucleotide-gated channels in tobacco (Nicotiana tabacum L.). Genomics 2019; 111:142-158. [PMID: 29476784 DOI: 10.1016/j.ygeno.2018.01.010] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Revised: 12/31/2017] [Accepted: 01/17/2018] [Indexed: 12/30/2022]
Abstract
Tobacco (Nicotiana tabacum) serve as the top leading commercial, non-food, and model crop worldwide. Cyclic nucleotide-gated channels (CNGCs) are ligand-gated, calcium-permeable, divalent, cation-selective channels, involved in important biological functions. Here, we systematically characterized thirty-five CNGC genes in the genome of Nicotiana tabacum, and classified into four phylogenetic groups. Evolutionary analysis showed that NtabCNGC family of N. tabacum originated from the parental genome of N. sylvestris and N. tomentosiformis, and further expanded via tandem and segmental duplication events. Tissue-specific expression analysis showed that twenty-three NtabCNGC genes are involved in the development of various tobacco tissues. Subsequent RT-qPCR analyses indicated that these genes are sensitive towards external abiotic and biotic stresses. Notable performances were exhibited by group-I and IV CNGC genes against black shank, Cucumber mosaic virus, Potato virus Y, cold, drought, and cadmium stresses. Our analyses also suggested that NtabCNGCs can be regulated by phosphorylation and miRNAs, and multiple light, temperature, and pathogen-responsive cis-acting regulatory elements present in promotors. These results will be useful for elaborating the biological roles of NtabCNGCs in tobacco growth and development.
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Affiliation(s)
- Zarqa Nawaz
- Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang 550081, China.
| | - Kaleem U Kakar
- Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang 550081, China; State Key Laboratory of Rice Biology, Institution of Crop Science, Zhejiang University, Hangzhou 310058, China.
| | - Raqeeb Ullah
- Department of Environmental Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Shizou Yu
- Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang 550081, China; Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Jie Zhang
- Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang 550081, China
| | - Qing-Yao Shu
- State Key Laboratory of Rice Biology, Institution of Crop Science, Zhejiang University, Hangzhou 310058, China.
| | - Xue-Liang Ren
- Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang 550081, China.
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188
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Sharma H, Taneja M, Upadhyay SK. Identification, characterization and expression profiling of cation-proton antiporter superfamily in Triticum aestivum L. and functional analysis of TaNHX4-B. Genomics 2019; 112:356-370. [PMID: 30818061 DOI: 10.1016/j.ygeno.2019.02.015] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 01/18/2019] [Accepted: 02/20/2019] [Indexed: 12/23/2022]
Abstract
The monovalent cation proton antiporter (CPA) superfamily comprises Na+/H+ exchanger (NHX), K+ efflux antiporter (KEA), and cation/H+ exchanger (CHX) family proteins, which play vital functions in plants. A total of 107 TaCPA proteins were identified in Triticum aestivum, and phylogenetically classified into 35 TaNHX, 24 TaKEA and 48 TaCHX proteins. These families had representatives derived from all three sub-genomes. TaKEA genes consisted of higher number of exons, followed by TaNHXs and TaCHXs. The occurrence of about 10 transmembrane regions and higher composition of helices and coils support their membrane-bound and hydrophobic nature. Diverse expression in various tissues and modulated expression under stress conditions suggested their role in development and in response to stress. Co-expression analyses revealed their complex interaction networks. Expression of TaNHX4-B.1 and TaNHX4-B.4 facilitated differential abiotic stress tolerance to Escherichia coli. Our study provides comprehensive information about CPA genes, which would be useful in their future functional characterization.
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Affiliation(s)
- Himanshu Sharma
- Department of Botany, Panjab University, Sector 14, Chandigarh 160014, India
| | - Mehak Taneja
- Department of Botany, Panjab University, Sector 14, Chandigarh 160014, India
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189
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Chen S, Liu Y, Deng Y, Liu Y, Dong M, Tian Y, Sun H, Li Y. Cloning and functional analysis of the VcCXIP4 and VcYSL6 genes as Cd-regulating genes in blueberry. Gene 2019; 686:104-117. [PMID: 30391441 DOI: 10.1016/j.gene.2018.10.078] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2018] [Revised: 10/11/2018] [Accepted: 10/27/2018] [Indexed: 11/26/2022]
Abstract
Blueberries (Vaccinium ssp.) show relatively high resistance to pollution and have been reported to successfully colonize acid and heavy metal-contaminated soils. Blueberries were subjected to cadmium stress using a simulated pot-culture method. The intact CDS regions of VcCXIP4 and VcYSL6 were obtained, VcCXIP4 was located in the nucleus, while VcYSL6 was located in the chloroplast. Both genes were constructed into a modified plant expression vector pCambia1301 for tobacco transformation with agrobacterium infection methods. Results showed that VcCXIP4 did not function alone in regulating cadmium (Cd) transport. Cd content of Cd in the leaves of VcYSL6 transgenic tobacco by 15.57% under high Cd concentration. Both, VcCXIP4 and VcYSL6 genes were up-regulated under Cd stress. Blueberry primarily accumulated excess Cd in the root, but Cd content in the fruit was almost independent of Cd content in the soil. Further, the effect of soil Cd content on fruit Cd content was not significant. VcCXIP4 is likely to interact with other proteins to regulate excess Cd in blueberry, while VcYSL6 is a Cd transporter required for excess Cd detoxification in blueberry.
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Affiliation(s)
- Shaopeng Chen
- College of Life Science, Jilin Agricultural University, Changchun 130118, PR China; College of Agriculture, Jilin Agricultural Science and Technology University, Jilin 132101, PR China
| | - Yushan Liu
- College of Life Science, Jilin Agricultural University, Changchun 130118, PR China
| | - Yu Deng
- College of Life Science, Jilin Agricultural University, Changchun 130118, PR China
| | - Yue Liu
- College of Life Science, Jilin Agricultural University, Changchun 130118, PR China
| | - Mei Dong
- College of Horticulture, Jilin Agricultural University, Changchun 130118, PR China
| | - Youwen Tian
- College of Life Science, Jilin Agricultural University, Changchun 130118, PR China
| | - Haiyue Sun
- College of Horticulture, Jilin Agricultural University, Changchun 130118, PR China.
| | - Yadong Li
- College of Horticulture, Jilin Agricultural University, Changchun 130118, PR China.
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190
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Shabala S. Linking ploidy level with salinity tolerance: NADPH-dependent 'ROS-Ca2+ hub' in the spotlight. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1063-1067. [PMID: 31222353 PMCID: PMC6382325 DOI: 10.1093/jxb/erz042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Affiliation(s)
- Sergey Shabala
- International Centre for Environmental Membrane Biology, Foshan University, Foshan, China
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, Australia
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191
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The Complex Fine-Tuning of K⁺ Fluxes in Plants in Relation to Osmotic and Ionic Abiotic Stresses. Int J Mol Sci 2019; 20:ijms20030715. [PMID: 30736441 PMCID: PMC6387338 DOI: 10.3390/ijms20030715] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Revised: 01/17/2019] [Accepted: 01/29/2019] [Indexed: 12/19/2022] Open
Abstract
As the main cation in plant cells, potassium plays an essential role in adaptive responses, especially through its involvement in osmotic pressure and membrane potential adjustments. K+ homeostasis must, therefore, be finely controlled. As a result of different abiotic stresses, especially those resulting from global warming, K⁺ fluxes and plant distribution of this ion are disturbed. The hormone abscisic acid (ABA) is a key player in responses to these climate stresses. It triggers signaling cascades that ultimately lead to modulation of the activities of K⁺ channels and transporters. After a brief overview of transcriptional changes induced by abiotic stresses, this review deals with the post-translational molecular mechanisms in different plant organs, in Arabidopsis and species of agronomical interest, triggering changes in K⁺ uptake from the soil, K⁺ transport and accumulation throughout the plant, and stomatal regulation. These modifications involve phosphorylation/dephosphorylation mechanisms, modifications of targeting, and interactions with regulatory partner proteins. Interestingly, many signaling pathways are common to K⁺ and Cl-/NO3- counter-ion transport systems. These cross-talks are also addressed.
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192
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Bassil E, Zhang S, Gong H, Tajima H, Blumwald E. Cation Specificity of Vacuolar NHX-Type Cation/H + Antiporters. PLANT PHYSIOLOGY 2019; 179:616-629. [PMID: 30498025 PMCID: PMC6426403 DOI: 10.1104/pp.18.01103] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Accepted: 11/07/2018] [Indexed: 05/02/2023]
Abstract
Cation/H+ (NHX-type) antiporters are important regulators of intracellular ion homeostasis and are critical for cell expansion and plant stress acclimation. In Arabidopsis (Arabidopsis thaliana), four distinct NHX isoforms, named AtNHX1 to AtNHX4, locate to the tonoplast. To determine the concerted roles of all tonoplast NHXs on vacuolar ion and pH homeostasis, we examined multiple knockout mutants lacking all but one of the four vacuolar isoforms and quadruple knockout plants lacking any vacuolar NHX activity. The nhx triple and quadruple knockouts displayed reduced growth phenotypes. Exposure to sodium chloride improved growth while potassium chloride was deleterious to some knockouts. Kinetic analysis of K+ and Na+ transport indicated that AtNHX1 and AtNHX2 are the main contributors to both vacuolar pH and K+ and Na+ uptake, while AtNHX3 and AtNHX4 differ in Na+/K+ selectivity. The lack of any vacuolar NHX activity resulted in no K+ uptake, highly acidic vacuoles, and reduced but not abolished vacuolar Na+ uptake. Additional K+/H+ and Na+/H+ exchange activity assays in the quadruple knockout indicated Na+ uptake that was not H+ coupled, suggesting the existence of an alternative, cation/H+-independent, Na+ conductive pathway in vacuoles. These results highlight the importance of NHX-type cation/H+ antiporters in the maintenance of cellular cation homeostasis and in growth and development.
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Affiliation(s)
- Elias Bassil
- Department of Plant Sciences, University of California, Davis, California 95616
- Horticultural Sciences Department and Tropical Research and Education Center, University of Florida, Homestead, Florida 33031
| | - Shiqi Zhang
- Department of Plant Sciences, University of California, Davis, California 95616
| | - Haijun Gong
- Department of Plant Sciences, University of California, Davis, California 95616
- College of Horticulture, Northwest A&F University, Yangling, 712100 Shaanxi, China
| | - Hiromi Tajima
- Department of Plant Sciences, University of California, Davis, California 95616
| | - Eduardo Blumwald
- Department of Plant Sciences, University of California, Davis, California 95616
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193
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Wang Y, Tang RJ, Yang X, Zheng X, Shao Q, Tang QL, Fu A, Luan S. Golgi-localized cation/proton exchangers regulate ionic homeostasis and skotomorphogenesis in Arabidopsis. PLANT, CELL & ENVIRONMENT 2019; 42:673-687. [PMID: 30255504 DOI: 10.1111/pce.13452] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 09/14/2018] [Accepted: 09/22/2018] [Indexed: 05/24/2023]
Abstract
Multiple transporters and channels mediate cation transport across the plasma membrane and tonoplast to regulate ionic homeostasis in plant cells. However, much less is known about the molecular function of transporters that facilitate cation transport in other organelles such as Golgi. We report here that Arabidopsis KEA4, KEA5, and KEA6, members of cation/proton antiporters-2 (CPA2) superfamily were colocalized with the known Golgi marker, SYP32-mCherry. Although single kea4,5,6 mutants showed similar phenotype as the wild type under various conditions, kea4/5/6 triple mutants showed hypersensitivity to low pH, high K+ , and high Na+ and displayed growth defects in darkness, suggesting that these three KEA-type transporters function redundantly in controlling etiolated seedling growth and ion homeostasis. Detailed analysis indicated that the kea4/5/6 triple mutant exhibited cell wall biosynthesis defect during the rapid etiolated seedling growth and under high K+ /Na+ condition. The cell wall-derived pectin homogalacturonan (GalA)3 partially suppressed the growth defects and ionic toxicity in the kea4/5/6 triple mutants when grown in the dark but not in the light conditions. Together, these data support the hypothesis that the Golgi-localized KEAs play key roles in the maintenance of ionic and pH homeostasis, thereby facilitating Golgi function in cell wall biosynthesis during rapid etiolated seedling growth and in coping with high K+ /Na+ stress.
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Affiliation(s)
- Yuan Wang
- College of Life Sciences, Northwest University, Xi'an, China
- Department of Plant and Microbial Biology, University of California, Berkeley, California
| | - Ren-Jie Tang
- Department of Plant and Microbial Biology, University of California, Berkeley, California
| | - Xiyan Yang
- Department of Plant and Microbial Biology, University of California, Berkeley, California
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Xiaojiang Zheng
- College of Life Sciences, Northwest University, Xi'an, China
- Department of Plant and Microbial Biology, University of California, Berkeley, California
| | - Qiaolin Shao
- Department of Plant and Microbial Biology, University of California, Berkeley, California
- The State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China
| | - Qing-Lin Tang
- Department of Plant and Microbial Biology, University of California, Berkeley, California
- Key Laboratory of Horticulture Science for Southern Mountainous Regions, Southwest University, Chongqing, China
| | - Aigen Fu
- College of Life Sciences, Northwest University, Xi'an, China
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, California
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194
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Moeder W, Phan V, Yoshioka K. Ca 2+ to the rescue - Ca 2+channels and signaling in plant immunity. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 279:19-26. [PMID: 30709488 DOI: 10.1016/j.plantsci.2018.04.012] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 04/07/2018] [Accepted: 04/13/2018] [Indexed: 05/03/2023]
Abstract
Ca2+ is a universal second messenger in many signaling pathways in all eukaryotes including plants. Transient changes in [Ca2+]cyt are rapidly generated upon a diverse range of stimuli such as drought, heat, wounding, and biotic stresses (infection by pathogenic and symbiotic microorganisms), as well as developmental cues. It has been known for a while that [Ca2+]cyt transient signals play crucial roles to activate plant immunity and recently significant progresses have been made in this research field. However the identity and regulation of ion channels that are involved in defense related Ca2+ signals are still enigmatic. Members of two ligand gated ion channel families, glutamate receptor-like channels (GLRs) and cyclic nucleotide-gated channels (CNGCs) have been implicated in immune responses; nevertheless more precise data to understand their direct involvement in the creation of Ca2+ signals during immune responses is necessary. Furthermore, the study of other ion channel groups is also required to understand the whole picture of the intra- and inter-cellular Ca2+ signalling network. In this review we summarize Ca2+ signals in plant immunity from an ion channel point of view and discuss future challenges in this exciting research field.
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Affiliation(s)
- Wolfgang Moeder
- Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, ON, M5S 3B2, Canada
| | - Van Phan
- Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, ON, M5S 3B2, Canada
| | - Keiko Yoshioka
- Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, ON, M5S 3B2, Canada; Center for the Analysis of Genome Evolution and Function (CAGEF), University of Toronto, 25 Willcocks Street, Toronto, ON, M5S 3B2, Canada.
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195
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Moon JY, Belloeil C, Ianna ML, Shin R. Arabidopsis CNGC Family Members Contribute to Heavy Metal Ion Uptake in Plants. Int J Mol Sci 2019; 20:E413. [PMID: 30669376 PMCID: PMC6358908 DOI: 10.3390/ijms20020413] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 01/10/2019] [Accepted: 01/16/2019] [Indexed: 12/31/2022] Open
Abstract
Heavy metal ions, including toxic concentrations of essential ions, negatively affect diverse metabolic and cellular processes. Heavy metal ions are known to enter cells in a non-selective manner; however, few studies have examined the regulation of heavy metal ion transport. Plant cyclic nucleotide-gated channels (CNGCs), a type of Ca2+-permeable-channel, have been suggested to be involved in the uptake of both essential and toxic cations. To determine the candidates responsible for heavy metal ion transport, a series of Arabidopsis CNGC mutants were examined for their response to Pb2+ and Cd2+ ions. The primary focus was on root growth and the analysis of the concentration of heavy metals in plants. Results, based on the analysis of primary root length, indicated that AtCNGC1, AtCNGC10, AtCNGC13 and AtCNGC19 play roles in Pb2+ toxicity, while AtCNGC11, AtCNGC13, AtCNGC16 and AtCNGC20 function in Cd2+ toxicity in Arabidopsis. Ion content analysis verified that the mutations of AtCNGC1 and AtCNGC13 resulted in reduced Pb2+ accumulation, while the mutations of AtCNGC11, AtCNGC15 and AtCNGC19 resulted in less Pb2+ and Cd2+ accumulation in plants. These findings provide functional evidence which support the roles of these AtCNGCs in the uptake and transport of Pb2+ or Cd2+ ion in plants.
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Affiliation(s)
- Ju Yeon Moon
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehirocho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
| | - Célestine Belloeil
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehirocho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
- Université Paris Diderot, 5 rue Thomas Mann, 75013 Paris, France.
| | - Madeline Louise Ianna
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehirocho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
- School of Science and Technology, UNE, Armidale, New South Wales 2351, Australia.
| | - Ryoung Shin
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehirocho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
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196
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Li J, Wang Y, Zheng L, Li Y, Zhou X, Li J, Gu D, Xu E, Lu Y, Chen X, Zhang W. The Intracellular Transporter AtNRAMP6 Is Involved in Fe Homeostasis in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2019; 10:1124. [PMID: 31608084 PMCID: PMC6757856 DOI: 10.3389/fpls.2019.01124] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 08/15/2019] [Indexed: 05/06/2023]
Abstract
Natural resistance-associated macrophage proteins (NRAMPs) have been shown to transport a wide range of divalent metal ions, such as manganese (Mn), cadmium (Cd), and Iron (Fe). Iron is an essential micronutrient for plants and Fe deficiency can lead to chlorosis or decreased biomass. AtNRAMP6 has demonstrated the capability to transport Cd, but its physiological function is currently unclear. This study demonstrates that AtNRAMP6 is localized to the Golgi/trans-Golgi network and plays an important role in intracellular Fe homeostasis in the flowering plant genus Arabidopsis. GUS tissue-specific expression revealed that AtNRAMP6 is highly expressed in the lateral roots and young leaves (three to four top leaves) of Arabidopsis. Moreover, knocking out AtNRAMP6 was shown to impair lateral root growth without having a differential effect on the main root under Fe-deficient conditions. Lastly, the expression of AtNRAMP6 was found to exacerbate the sensitivity of the yeast mutant Δccc1 to an excessive amount of Fe. These findings indicate that AtNRAMP6 plays an important role in the growth of Arabidopsis in Fe-deficient conditions.
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Affiliation(s)
- Jiyu Li
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
- Institute of Horticulture, Anhui Academy of Agricultural Sciences, Hefei, China
- Key Laboratory of Genetic Improvement and Ecophysiology of Horticultural Crops, Hefei, China
| | - Yuerong Wang
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Lu Zheng
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yun Li
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xueli Zhou
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Jingjun Li
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Dongfang Gu
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Ending Xu
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yaping Lu
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xi Chen
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
- *Correspondence: Xi Chen, ; Wei Zhang,
| | - Wei Zhang
- Department of Biochemistry & Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
- *Correspondence: Xi Chen, ; Wei Zhang,
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Zhang W, Liao X, Cui Y, Ma W, Zhang X, Du H, Ma Y, Ning L, Wang H, Huang F, Yang H, Kan G, Yu D. A cation diffusion facilitator, GmCDF1, negatively regulates salt tolerance in soybean. PLoS Genet 2019; 15:e1007798. [PMID: 30615606 PMCID: PMC6336350 DOI: 10.1371/journal.pgen.1007798] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 01/17/2019] [Accepted: 10/30/2018] [Indexed: 01/26/2023] Open
Abstract
Salt stress is one of the major abiotic factors that affect the metabolism, growth and development of plants, and soybean [Glycine max (L.) Merr.] germination is sensitive to salt stress. Thus, to ensure the successful establishment and productivity of soybeans in saline soil, the genetic mechanisms of salt tolerance at the soybean germination stage need to be explored. In this study, a population of 184 recombinant inbred lines (RILs) was utilized to map quantitative trait loci (QTLs) related to salt tolerance. A major QTL related to salt tolerance at the soybean germination stage named qST-8 was closely linked with the marker Sat_162 and detected on chromosome 8. Interestingly, a genome-wide association study (GWAS) identified several single nucleotide polymorphisms (SNPs) significantly associated with salt tolerance in the same genetic region on chromosome 8. Resequencing, bioinformatics and gene expression analyses were implemented to identify the candidate gene Glyma.08g102000, which belongs to the cation diffusion facilitator (CDF) family and was named GmCDF1. Overexpression and RNA interference of GmCDF1 in soybean hairy roots resulted in increased sensitivity and tolerance to salt stress, respectively. This report provides the first demonstration that GmCDF1 negatively regulates salt tolerance by maintaining K+-Na+ homeostasis in soybean. In addition, GmCDF1 affected the expression of two ion homeostasis-associated genes, salt overly sensitive 1 (GmSOS1) and Na+/H+ exchanger 1 (GmNHX1), in transgenic hairy roots. Moreover, a haplotype analysis detected ten haplotypes of GmCDF1 in 31 soybean genotypes. A candidate-gene association analysis showed that two SNPs in GmCDF1 were significantly associated with salt tolerance and that Hap1 was more sensitive to salt stress than Hap2. The results demonstrated that the expression level of GmCDF1 was negatively correlated with salt tolerance in the 31 soybean accessions (r = -0.56, P < 0.01). Taken together, these results not only indicate that GmCDF1 plays a negative role in soybean salt tolerance but also help elucidate the molecular mechanisms of salt tolerance and accelerate the breeding of salt-tolerant soybean.
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Affiliation(s)
- Wei Zhang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Xiliang Liao
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Yanmei Cui
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Weiyu Ma
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Xinnan Zhang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Hongyang Du
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Yujie Ma
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Lihua Ning
- Provincial Key Laboratory of Agrobiology, Institute of Agro-biotechnology, Jiangsu Academy of Agriculture Sciences, Nanjing, China
| | - Hui Wang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Fang Huang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Hui Yang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
- School of Life Sciences, Guangzhou University, Guangzhou, China
| | - Guizhen Kan
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Deyue Yu
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
- School of Life Sciences, Guangzhou University, Guangzhou, China
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Flowers TJ, Glenn EP, Volkov V. Could vesicular transport of Na+ and Cl- be a feature of salt tolerance in halophytes? ANNALS OF BOTANY 2019; 123:1-18. [PMID: 30247507 PMCID: PMC6344095 DOI: 10.1093/aob/mcy164] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 08/10/2018] [Indexed: 05/18/2023]
Abstract
Background Halophytes tolerate external salt concentrations of 200 mm and more, accumulating salt concentrations of 500 mm and more in their shoots; some, recretohalophytes, excrete salt through glands on their leaves. Ions are accumulated in central vacuoles, but the pathway taken by these ions from the outside of the roots to the vacuoles inside the cells is poorly understood. Do the ions cross membranes through ion channels and transporters or move in vesicles, or both? Vesicular transport from the plasma membrane to the vacuole would explain how halophytes avoid the toxicity of high salt concentrations on metabolism. There is also a role for vesicles in the export of ions via salt glands. Scope and Methods We have collected data on the fluxes of sodium and chloride ions in halophytes, based on the weight of the transporting organs and on the membrane area across which the flux occurs; the latter range from 17 nmol m-2 s-1 to 4.2 μmol m-2 s-1 and values up to 1 μmol m-2 s-1 need to be consistent with whatever transport system is in operation. We have summarized the sizes and rates of turnover of vesicles in plants, where clathrin-independent vesicles are 100 nm or more in diameter and can merge with the plasma membrane at rates of 100 s-1. We gathered evidence for vesicular transport of ions in halophytes and evaluated whether vesicular transport could account for the observable fluxes. Conclusions There is strong evidence in favour of vesicular transport in plants and circumstantial evidence in favour of the movement of ions in vesicles. Estimated rates of vesicle turnover could account for ion transport at the lower reported fluxes (around 20 nmol m-2 s-1), but the higher fluxes may require vesicles of the order of 1 μm or more in diameter. The very high fluxes reported in some salt glands might be an artefact of the way they were measured.
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Affiliation(s)
- Timothy J Flowers
- School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QG, UK
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA, Australia
| | - Edward P Glenn
- Environmental Research Laboratory of the University of Arizona, 1601 East, Airport Drive, Tucson, AZ, USA
| | - Vadim Volkov
- Faculty of Life Sciences and Computing, London Metropolitan University, London N7, UK
- Department of Plant Sciences, College of Agricultural and Environmental Sciences, University of California, Davis, CA, USA
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Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat ( Triticum aestivum L.). Int J Mol Sci 2018; 19:ijms19123969. [PMID: 30544665 PMCID: PMC6321448 DOI: 10.3390/ijms19123969] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Revised: 12/01/2018] [Accepted: 12/01/2018] [Indexed: 12/13/2022] Open
Abstract
In plants, the HAK (high-affinity K+)/KUP (K+ uptake)/KT (K+ transporter) family represents a large group of potassium transporters that play important roles in plant growth and environmental adaptation. Although HAK/KUP/KT genes have been extensively investigated in many plant species, they remain uncharacterized in wheat, especially those involved in the response to environmental stresses. In this study, 56 wheat HAK/KUP/KT (hereafter called TaHAKs) genes were identified by a genome-wide search using recently released wheat genomic data. Phylogenetic analysis grouped these genes into four clusters (Ι, II, III, IV), containing 22, 19, 7 and 8 genes, respectively. Chromosomal distribution, gene structure, and conserved motif analyses of the 56 TaHAK genes were subsequently performed. In silico RNA-seq data analysis revealed that TaHAKs from clusters II and III are constitutively expressed in various wheat tissues, while most genes from clusters I and IV have very low expression levels in the examined tissues at different developmental stages. qRT-PCR analysis showed that expression levels of TaHAK genes in wheat seedlings were significantly up- or downregulated when seedlings were exposed to K+ deficiency, high salinity, or dehydration. Furthermore, we functionally characterized TaHAK1b-2BL and showed that it facilitates K+ transport in yeast. Collectively, these results provide valuable information for further functional studies of TaHAKs, and contribute to a better understanding of the molecular basis of wheat development and stress tolerance.
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