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Schumacher K, Prince MR, Blumenfeld JD, Rennert H, Hu Z, Dev H, Wang Y, Dimov AV. Quantitative susceptibility mapping for detection of kidney stones, hemorrhage differentiation, and cyst classification in ADPKD. Abdom Radiol (NY) 2024:10.1007/s00261-024-04243-6. [PMID: 38530430 DOI: 10.1007/s00261-024-04243-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 02/06/2024] [Accepted: 02/07/2024] [Indexed: 03/28/2024]
Abstract
BACKGROUND AND PURPOSE The objective is to demonstrate feasibility of quantitative susceptibility mapping (QSM) in autosomal dominant polycystic kidney disease (ADPKD) patients and to compare imaging findings with traditional T1/T2w magnetic resonance imaging (MRI). METHODS Thirty-three consecutive patients (11 male, 22 female) diagnosed with ADPKD were initially selected. QSM images were reconstructed from the multiecho gradient echo data and compared to co-registered T2w, T1w, and CT images. Complex cysts were identified and classified into distinct subclasses based on their imaging features. Prevalence of each subclass was estimated. RESULTS QSM visualized two renal calcifications measuring 9 and 10 mm and three pelvic phleboliths measuring 2 mm but missed 24 calcifications measuring 1 mm or less and 1 larger calcification at the edge of the field of view. A total of 121 complex T1 hyperintense/T2 hypointense renal cysts were detected. 52 (43%) Cysts appeared hyperintense on QSM consistent with hemorrhage; 60 (49%) cysts were isointense with respect to simple cysts and normal kidney parenchyma, while the remaining 9 (7%) were hypointense. The presentation of the latter two complex cyst subtypes is likely indicative of proteinaceous composition without hemorrhage. CONCLUSION Our results indicate that QSM of ADPKD kidneys is possible and uniquely suited to detect large renal calculi without ionizing radiation and able to identify properties of complex cysts unattainable with traditional approaches.
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Affiliation(s)
- Karl Schumacher
- Department of Bioengineering, Santa Clara University, Santa Clara, CA, USA
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA
| | - Martin R Prince
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA
| | - Jon D Blumenfeld
- The Rogosin Institute, New York, NY, USA
- Department of Medicine, Weill Cornell Medicine, New York, NY, USA
| | - Hanna Rennert
- Department of Pathology, Weill Cornell Medicine, New York, NY, USA
| | - Zhongxiu Hu
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA
| | - Hreedi Dev
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA
| | - Yi Wang
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA
| | - Alexey V Dimov
- Department of Radiology, Weill Cornell Medicine, New York, NY, USA.
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2
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Voltin J, Nunn LM, Watson Z, Brasher ZE, Adisetiyo V, Hanlon CA, Nietert PJ, McRae-Clark AL, Jensen JH. Comparison of three magnetic resonance imaging measures of brain iron in healthy and cocaine use disorder participants. NMR IN BIOMEDICINE 2024; 37:e5072. [PMID: 38009303 PMCID: PMC10922943 DOI: 10.1002/nbm.5072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 09/28/2023] [Accepted: 10/23/2023] [Indexed: 11/28/2023]
Abstract
Several magnetic resonance imaging (MRI) measures for quantifying endogenous nonheme brain iron have been proposed. These correspond to distinct physical properties with varying sensitivities and specificities to iron. Moreover, they may depend not only on tissue iron concentration, but also on the intravoxel spatial pattern of iron deposition, which is complex in many brain regions. Here, the three MRI brain iron measures of R 2 * , magnetic field correlation (MFC), and magnetic susceptibility are compared in several deep gray matter regions for both healthy participants (HPs) and individuals with cocaine use disorder (CUD). Their concordance is assessed from their correlations with each other and their relative dependencies on age. In addition, associations between the iron measures and microstructure in adjacent white matter regions are investigated by calculating their correlations with diffusion MRI measures from the internal capsule, and associations with cognition are determined by using results from a battery of standardized tests relevant to CUD. It is found that all three iron measures are strongly correlated with each other for the considered gray matter regions, but with correlation coefficients substantially less than one indicating important differences. The age dependencies of all three measures are qualitatively similar in most regions, except for the red nucleus, where the susceptibility has a significantly stronger correlation with age than R 2 * . Weak to moderate correlations are seen for the iron measures with several of the diffusion and cognitive measures, with the strongest correlations being obtained for R 2 * . The iron measures differ little between the HP and CUD groups, although susceptibility is significantly lower in the red nucleus for the CUD group. For the comparisons made, the iron measures behave similarly in most respects, but with notable quantitative differences. It is suggested that these differences may be, in part, attributable to a higher sensitivity to the spatial pattern of iron deposition for R 2 * and MFC than for susceptibility. This is supported most strongly by a sharp contrast between the values of the iron measures in the globus pallidus relative to those in the red nucleus. The observed correlations of the iron measures with diffusion and cognitive scores point to possible connections between gray matter iron, white matter microstructure, and cognition.
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Affiliation(s)
- Joshua Voltin
- Center for Biomedical Imaging, Medical University of South Carolina, Charleston, South Carolina
- Department of Neuroscience, Medical University of South Carolina, Charleston, South Carolina
| | - Lisa M. Nunn
- Department of Psychiatry and Behavioral Science, Medical University of South Carolina, Charleston, South Carolina
| | - Zoe Watson
- Department of Psychiatry and Behavioral Science, Medical University of South Carolina, Charleston, South Carolina
| | - Zoe E. Brasher
- Department of Behavioral Science and Neuroscience, Duke University Medical Center, Durham, North Carolina
| | - Vitria Adisetiyo
- Department of Neuroscience, Medical University of South Carolina, Charleston, South Carolina
| | - Colleen A. Hanlon
- Department of Psychiatry and Behavioral Science, Medical University of South Carolina, Charleston, South Carolina
| | - Paul J. Nietert
- Department of Public Health Sciences, Medical University of South Carolina, Charleston, South Carolina
| | - Aimee L. McRae-Clark
- Department of Psychiatry and Behavioral Science, Medical University of South Carolina, Charleston, South Carolina
| | - Jens H. Jensen
- Center for Biomedical Imaging, Medical University of South Carolina, Charleston, South Carolina
- Department of Neuroscience, Medical University of South Carolina, Charleston, South Carolina
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, South Carolina
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Rotkopf LT, Buschle LR, Schlemmer HP, Ziener CH. Influence of diffusion on transverse relaxation rates and phases of an ensemble of magnetic spheres. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 341:107259. [PMID: 35779309 DOI: 10.1016/j.jmr.2022.107259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 05/30/2022] [Accepted: 06/19/2022] [Indexed: 06/15/2023]
Abstract
In quantitative susceptibility mapping, the tissue susceptibility is determined from the magnitude and phase of the gradient echo signal, which is influenced by the interplay of complex susceptibility and diffusion effect. Herein, we analytically analyze the influence of diffusion on magnitude and phase images generated by randomly arranged magnetic spheres as a model of intracerebral iron depositions. We demonstrate that both gradient and spin echo relaxation rate constants have a strong and nonlinear dependence on diffusion strength and give empirical formulas for magnitude and phase. This may be used in the future to improve QSM processing methods. In addition, we show that, in theory, combined acquisitions of gradient and spin echo can be used to determine the dimension of the magnetic spheres and the diffusion strength.
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Affiliation(s)
- L T Rotkopf
- Department of Radiology, German Cancer Research Center, Im Neuenheimer Feld 220, 69120 Heidelberg, Germany; Medical Faculty, Ruprecht-Karls-University Heidelberg, Heidelberg, Germany
| | - L R Buschle
- Department of Radiology, German Cancer Research Center, Im Neuenheimer Feld 220, 69120 Heidelberg, Germany
| | - H-P Schlemmer
- Department of Radiology, German Cancer Research Center, Im Neuenheimer Feld 220, 69120 Heidelberg, Germany
| | - C H Ziener
- Department of Radiology, German Cancer Research Center, Im Neuenheimer Feld 220, 69120 Heidelberg, Germany.
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4
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Qian Y, Hou J, Jiang B, Wong VWS, Lee J, Chan Q, Wang Y, Chu WCW, Chen W. Characterization and correction of the effects of hepatic iron on T 1ρ relaxation in the liver at 3.0T. Magn Reson Med 2022; 88:1828-1839. [PMID: 35608236 DOI: 10.1002/mrm.29310] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 04/13/2022] [Accepted: 05/02/2022] [Indexed: 11/10/2022]
Abstract
PURPOSE Quantitative T1ρ imaging is an emerging technique to assess the biochemical properties of tissues. In this paper, we report our observation that liver iron content (LIC) affects T1ρ quantification of the liver at 3.0T field strength and develop a method to correct the effect of LIC. THEORY AND METHODS On-resonance R1ρ (1/T1ρ ) is mainly affected by the intrinsic R2 (1/T2 ), which is influenced by LIC. As on-resonance R1ρ is closely related to the Carr-Purcell-Meiboom-Gill (CPMG) R2 , and because the calibration between CPMG R2 and LIC has been reported at 1.5T, a correction method was proposed to correct the R2 contribution to the R1ρ . The correction coefficient was obtained from the calibration results and related transformed factors. To compensate for the difference between CPMG R2 and R1ρ , a scaling factor was determined using the values of CPMG R2 and R1ρ , obtained simultaneously from a single breath-hold from volunteers. The livers of 110 subjects were scanned to validate the correction method. RESULTS LIC was significantly correlated with R1ρ in the liver. However, when the proposed correction method was applied to R1ρ , LIC and the iron-corrected R1ρ were not significantly correlated. CONCLUSION LIC can affect T1ρ in the liver. We developed an iron-correction method for the quantification of T1ρ in the liver at 3.0T.
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Affiliation(s)
- Yurui Qian
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China
| | - Jian Hou
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China
| | - Baiyan Jiang
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China.,Illuminatio Medical Technology Limited, Hong Kong, China
| | - Vincent Wai-Sun Wong
- Department of Medicine and Therapeutics, the Chinese University of Hong Kong, Hong Kong, China
| | - Jack Lee
- Clinical Trials and Biostatistics Lab, CUHK Shenzhen Research Institute, Shenzhen, China.,Division of Biostatistics, Jockey Club School of Public Health and Primary Care, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China
| | | | - Yixiang Wang
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China
| | - Winnie Chiu-Wing Chu
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China
| | - Weitian Chen
- Department of Imaging and Interventional Radiology, the Chinese University of Hong Kong, Hong Kong, China
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5
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Multiparametric MRI identifies subtle adaptations for demarcation of disease transition in murine aortic valve stenosis. Basic Res Cardiol 2022; 117:29. [PMID: 35643805 PMCID: PMC9148878 DOI: 10.1007/s00395-022-00936-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 05/11/2022] [Accepted: 05/12/2022] [Indexed: 02/01/2023]
Abstract
Aortic valve stenosis (AS) is the most frequent valve disease with relevant prognostic impact. Experimental model systems for AS are scarce and comprehensive imaging techniques to simultaneously quantify function and morphology in disease progression are lacking. Therefore, we refined an acute murine AS model to closely mimic human disease characteristics and developed a high-resolution magnetic resonance imaging (MRI) approach for simultaneous in-depth analysis of valvular, myocardial as well as aortic morphology/pathophysiology to identify early changes in tissue texture and critical transition points in the adaptive process to AS. AS was induced by wire injury of the aortic valve. Four weeks after surgery, cine loops, velocity, and relaxometry maps were acquired at 9.4 T to monitor structural/functional alterations in valve, aorta, and left ventricle (LV). In vivo MRI data were subsequently validated by histology and compared to echocardiography. AS mice exhibited impaired valve opening accompanied by significant valve thickening due to fibrotic remodelling. While control mice showed bell-shaped flow profiles, AS resulted not only in higher peak flow velocities, but also in fragmented turbulent flow patterns associated with enhanced circumferential strain and an increase in wall thickness of the aortic root. AS mice presented with a mild hypertrophy but unaffected global LV function. Cardiac MR relaxometry revealed reduced values for both T1 and T2 in AS reflecting subtle myocardial tissue remodelling with early alterations in mitochondrial function in response to the enhanced afterload. Concomitantly, incipient impairments of coronary flow reserve and myocardial tissue integrity get apparent accompanied by early troponin release. With this, we identified a premature transition point with still compensated cardiac function but beginning textural changes. This will allow interventional studies to explore early disease pathophysiology and novel therapeutic targets.
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6
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Scheffler K, Engelmann J, Heule R. BOLD sensitivity and vessel size specificity along CPMG and GRASE echo trains. Magn Reson Med 2021; 86:2076-2083. [PMID: 34056746 DOI: 10.1002/mrm.28871] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 05/05/2021] [Accepted: 05/10/2021] [Indexed: 11/10/2022]
Abstract
PURPOSE To assess the vessel size specificity and sensitivity of rapid CPMG and GRASE for functional BOLD imaging for different echo train lengths, echo spacings, field strength, and refocusing flip angle schemes. In addition, the behavior of signals acquired before and after the refocusing time points is analyzed. METHODS Evolution of magnetization within a network of artificial cylinders is simulated with Monte Carlo methods for all relevant coherence pathways. In addition, measurements on microspheres were performed to confirm some of the theoretical results. RESULTS For reduced refocusing flip angles, the peak of the vessel size sensitivity curve is shifting toward larger radii with increasing echo time. Furthermore, the BOLD-related signal change along the echo train depends on the chosen refocusing flip angle scheme and in general does not follow corresponding echo amplitudes. CONCLUSION CPMG or GRASE can be used with low refocusing flip angles without significant loss of sensitivity to BOLD. The evolution of BOLD signal changes along the echo train can be used to design optimal k-space reordering schemes. Signals acquired before or after the spin echo time point show contributions from larger vessels similar to gradient echo sequences. Short echo spacing (time between refocusing pulses) suppresses gradient echo-related contributions from larger vessels, whereas the spin echo-related contribution from small vessels remains constant and is independent of the echo spacing.
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Affiliation(s)
- Klaus Scheffler
- High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.,Department for Biomedical Magnetic Resonance, University of Tübingen, Tübingen, Germany
| | - Jörn Engelmann
- High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany
| | - Rahel Heule
- High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.,Department for Biomedical Magnetic Resonance, University of Tübingen, Tübingen, Germany
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7
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Novikov DS. The present and the future of microstructure MRI: From a paradigm shift to normal science. J Neurosci Methods 2020; 351:108947. [PMID: 33096152 DOI: 10.1016/j.jneumeth.2020.108947] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 08/29/2020] [Accepted: 09/10/2020] [Indexed: 12/29/2022]
Abstract
The aspiration of imaging tissue microstructure with MRI is to uncover micrometer-scale tissue features within millimeter-scale imaging voxels, in vivo. This kind of super-resolution has fueled a paradigm shift within the biomedical imaging community. However, what feels like an ongoing revolution in MRI, has been conceptually experienced in physics decades ago; from this point of view, our current developments can be seen as Thomas Kuhn's "normal science" stage of progress. While the concept of model-based quantification below the nominal imaging resolution is not new, its possibilities in neuroscience and neuroradiology are only beginning to be widely appreciated. This disconnect calls for communicating the progress of tissue microstructure MR imaging to its potential users. Here, a number of recent research developments are outlined in terms of the overarching concept of coarse-graining the tissue structure over an increasing diffusion length. A variety of diffusion models and phenomena are summarized on the phase diagram of diffusion MRI, with the unresolved problems and future directions corresponding to its unexplored domains.
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Affiliation(s)
- Dmitry S Novikov
- Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, USA.
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8
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Finnegan ME, Visanji NP, Romero-Canelon I, House E, Rajan S, Mosselmans JFW, Hazrati LN, Dobson J, Collingwood JF. Synchrotron XRF imaging of Alzheimer's disease basal ganglia reveals linear dependence of high-field magnetic resonance microscopy on tissue iron concentration. J Neurosci Methods 2019; 319:28-39. [PMID: 30851339 DOI: 10.1016/j.jneumeth.2019.03.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 03/02/2019] [Accepted: 03/02/2019] [Indexed: 12/17/2022]
Abstract
BACKGROUND Chemical imaging of the human brain has great potential for diagnostic and monitoring purposes. The heterogeneity of human brain iron distribution, and alterations to this distribution in Alzheimer's disease, indicate iron as a potential endogenous marker. The influence of iron on certain magnetic resonance imaging (MRI) parameters increases with magnetic field, but is under-explored in human brain tissues above 7 T. NEW METHOD Magnetic resonance microscopy at 9.4 T is used to calculate parametric images of chemically-unfixed post-mortem tissue from Alzheimer's cases (n = 3) and healthy controls (n = 2). Iron-rich regions including caudate nucleus, putamen, globus pallidus and substantia nigra are analysed prior to imaging of total iron distribution with synchrotron X-ray fluorescence mapping. Iron fluorescence calibration is achieved with adjacent tissue blocks, analysed by inductively coupled plasma mass spectrometry or graphite furnace atomic absorption spectroscopy. RESULTS Correlated MR images and fluorescence maps indicate linear dependence of R2, R2* and R2' on iron at 9.4 T, for both disease and control, as follows: [R2(s-1) = 0.072[Fe] + 20]; [R2*(s-1) = 0.34[Fe] + 37]; [R2'(s-1) = 0.26[Fe] + 16] for Fe in μg/g tissue (wet weight). COMPARISON WITH EXISTING METHODS This method permits simultaneous non-destructive imaging of most bioavailable elements. Iron is the focus of the present study as it offers strong scope for clinical evaluation; the approach may be used more widely to evaluate the impact of chemical elements on clinical imaging parameters. CONCLUSION The results at 9.4 T are in excellent quantitative agreement with predictions from experiments performed at lower magnetic fields.
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Affiliation(s)
- Mary E Finnegan
- Department of Imaging, Imperial College Healthcare NHS Trust, London, UK; Department of Bioengineering, Imperial College London, London, UK
| | - Naomi P Visanji
- The Edmond J Safra Program in Parkinson's Disease and the Morton & Gloria Shulman Movement Disorders Clinic, Toronto Western Hospital, Toronto, Ontario, M5T 2S8, Canada
| | - Isolda Romero-Canelon
- School of Pharmacy, Institute of Clinical Sciences, University of Birmingham, Birmingham B15 2TT, UK
| | - Emily House
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | - Surya Rajan
- School of Engineering, University of Warwick, Coventry, CV4 7AL, UK
| | | | | | - Jon Dobson
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL 32611, USA
| | - Joanna F Collingwood
- School of Engineering, University of Warwick, Coventry, CV4 7AL, UK; Department of Materials Science and Engineering, University of Florida, Gainesville, FL 32611, USA.
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9
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Sheth S, Allen CJ, Farrell DE, Tripp JH, Jafari R, Wang Y, Brittenham GM. Measurement of the liver iron concentration in transfusional iron overload by MRI R2* and by high-transition-temperature superconducting magnetic susceptometry. Clin Imaging 2019; 55:65-70. [PMID: 30754013 DOI: 10.1016/j.clinimag.2019.01.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2018] [Revised: 12/11/2018] [Accepted: 01/15/2019] [Indexed: 01/19/2023]
Abstract
PURPOSE To compare measurement of the liver iron concentration in patients with transfusional iron overload by magnetic resonance imaging (MRI), using R2*, and by magnetic susceptometry, using a new high-transitiontemperature (high-Tc; operating at 77 K, cooled by liquid nitrogen) superconducting magnetic susceptometer. METHODS In 28 patients with transfusional iron overload, 43 measurements of the liver iron concentration were made by both R2* and high-Tc magnetic susceptometry. RESULTS Measurements of the liver iron concentration by R2* and high-Tc magnetic susceptometry were significantly correlated when comparing all patients (Pearson's r = 0.91, p < 0.0001) and those with results by susceptometry >7 mg Fe/g liver, dry weight (r = 0.93, p = 0.006). In lower ranges of liver iron, no significant correlations between the two methods were found (0 to <3.2 mg Fe/g liver, dry weight: r = 0.2, p = 0.37; 3.2 to 7 mg Fe/g liver, dry weight: r = 0.41; p = 0.14). CONCLUSION The lack of linear correlation between R2* and magnetic susceptibility measurements of the liver iron concentration with minimal or modest iron overload may be due to the effects of fibrosis and other cellular pathology that interfere with R2* but do not appreciably alter magnetic susceptibility.
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Affiliation(s)
- Sujit Sheth
- Weill Cornell Medical College, New York, NY, USA
| | | | | | - John H Tripp
- Case Western Reserve University, Cleveland, OH, USA
| | | | - Yi Wang
- Weill Cornell Medical College, New York, NY, USA; Cornell University, Ithaca, NY, USA
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10
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Fieremans E, Lee HH. Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook. Neuroimage 2018; 182:39-61. [PMID: 29920376 PMCID: PMC6175674 DOI: 10.1016/j.neuroimage.2018.06.046] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2017] [Revised: 06/08/2018] [Accepted: 06/13/2018] [Indexed: 12/24/2022] Open
Abstract
Phantoms, both numerical (software) and physical (hardware), can serve as a gold standard for the validation of MRI methods probing the brain microstructure. This review aims to provide guidelines on how to build, implement, or choose the right phantom for a particular application, along with an overview of the current state-of-the-art of phantoms dedicated to study brain microstructure with MRI. For physical phantoms, we discuss the essential requirements and relevant characteristics of both the (NMR visible) liquid and (NMR invisible) phantom materials that induce relevant microstructural features detectable via MRI, based on diffusion, intra-voxel incoherent motion, magnetization transfer or magnetic susceptibility weighted contrast. In particular, for diffusion MRI, many useful phantoms have been proposed, ranging from simple liquids to advanced biomimetic phantoms consisting of hollow or plain microfibers and capillaries. For numerical phantoms, the focus is on Monte Carlo simulations of random walk, for which the basic principles, along with useful criteria to check and potential pitfalls are reviewed, in addition to a literature overview highlighting recent advances. While many phantoms exist already, the current review aims to stimulate further research in the field and to address remaining needs.
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Affiliation(s)
- Els Fieremans
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, USA.
| | - Hong-Hsi Lee
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, USA
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11
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Kiselev VG, Novikov DS. Transverse NMR relaxation in biological tissues. Neuroimage 2018; 182:149-168. [PMID: 29885485 PMCID: PMC6175675 DOI: 10.1016/j.neuroimage.2018.06.002] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2017] [Revised: 05/02/2018] [Accepted: 06/03/2018] [Indexed: 12/22/2022] Open
Abstract
Transverse NMR relaxation is a fundamental physical phenomenon underpinning a wide range of MRI-based techniques, essential for non-invasive studies in biology, physiology and neuroscience, as well as in diagnostic imaging. Biophysically, transverse relaxation originates from a number of distinct scales - molecular (nanometers), cellular (micrometers), and macroscopic (millimeter-level MRI resolution). Here we review the contributions to the observed relaxation from each of these scales, with the main focus on the cellular level of tissue organization, commensurate with the diffusion length of spin-carrying molecules. We discuss how the interplay between diffusion and spin dephasing in a spatially heterogeneous tissue environment leads to a non-monoexponential time-dependent transverse relaxation signal that contains important biophysical information about tissue microstructure.
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Affiliation(s)
- Valerij G Kiselev
- Medical Physics, Department of Diagnostic Radiology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Germany.
| | - Dmitry S Novikov
- Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, USA
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12
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Novikov DS, Kiselev VG, Jespersen SN. On modeling. Magn Reson Med 2018; 79:3172-3193. [PMID: 29493816 PMCID: PMC5905348 DOI: 10.1002/mrm.27101] [Citation(s) in RCA: 213] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 12/22/2017] [Accepted: 01/01/2018] [Indexed: 01/17/2023]
Abstract
Mapping tissue microstructure with MRI holds great promise as a noninvasive window into tissue organization at the cellular level. Having originated within the realm of diffusion NMR in the late 1970s, this field is experiencing an exponential growth in the number of publications. At the same time, model-based approaches are also increasingly incorporated into advanced MRI acquisition and reconstruction techniques. However, after about two decades of intellectual and financial investment, microstructural mapping has yet to find a single commonly accepted clinical application. Here, we suggest that slow progress in clinical translation may signify unresolved fundamental problems. We outline such problems and related practical pitfalls, as well as review strategies for developing and validating tissue microstructure models, to provoke a discussion on how to bridge the gap between our scientific aspirations and the clinical reality. We argue for recalibrating the efforts of our community toward a more systematic focus on fundamental research aimed at identifying relevant degrees of freedom affecting the measured MR signal. Such a focus is essential for realizing the truly revolutionary potential of noninvasive three-dimensional in vivo microstructural mapping.
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Affiliation(s)
- Dmitry S Novikov
- Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York, USA
| | - Valerij G Kiselev
- Department of Radiology, Medical Physics, University Medical Center Freiburg, Faculty of Medicine, Freiburg, Germany
| | - Sune N Jespersen
- CFIN/MINDLab, Department of Clinical Medicine, Aarhus University, Aarhus, Denmark
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
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13
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Ruh A, Scherer H, Kiselev VG. The larmor frequency shift in magnetically heterogeneous media depends on their mesoscopic structure. Magn Reson Med 2017; 79:1101-1110. [PMID: 28524556 DOI: 10.1002/mrm.26753] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Revised: 04/19/2017] [Accepted: 04/20/2017] [Indexed: 11/08/2022]
Abstract
PURPOSE Recent studies have addressed the determination of the NMR precession frequency in biological tissues containing magnetic susceptibility differences between cell types. The purpose of this study is to investigate the dependence of the precession frequency on medium microstructure using a simple physical model. THEORY This dependence is governed by diffusion of NMR-visible molecules in magnetically heterogeneous microenvironments. In the limit of fast diffusion, the precession frequency is determined by the average susceptibility-induced magnetic field, whereas in the limit of slow diffusion it is determined by the average local phase factor of precessing spins. METHODS The main method used is Monte Carlo simulation of isotropic suspensions of impermeable magnetized spheres. In addition, NMR spectroscopy was performed in aqueous suspensions of polystyrene microbeads. RESULTS The precession frequency depends on the structural organization of magnetized objects in the medium. Monte Carlo simulations demonstrated a nonmonotonic transition between the regimes of fast and slow diffusion. NMR experiments confirmed the transition, but were unable to confirm its precise form. Results for a given pattern of structural organization obey a scaling law. CONCLUSION The NMR precession frequency exhibits a complex dependence on medium structure. Our results suggest that the commonly assumed limit of fast water diffusion holds for biological tissues with small cells. Magn Reson Med 79:1101-1110, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Alexander Ruh
- Medical Physics, Department of Radiology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Harald Scherer
- Institute of Inorganic and Analytical Chemistry, University of Freiburg, Freiburg, Germany
| | - Valerij G Kiselev
- Medical Physics, Department of Radiology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
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Uddin MN, Lebel RM, Wilman AH. Value of transverse relaxometry difference methods for iron in human brain. Magn Reson Imaging 2016; 34:51-9. [DOI: 10.1016/j.mri.2015.09.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Revised: 05/06/2015] [Accepted: 09/11/2015] [Indexed: 01/14/2023]
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Kurz FT, Kampf T, Buschle LR, Schlemmer HP, Heiland S, Bendszus M, Ziener CH. Microstructural Analysis of Peripheral Lung Tissue through CPMG Inter-Echo Time R2 Dispersion. PLoS One 2015; 10:e0141894. [PMID: 26544068 PMCID: PMC4636373 DOI: 10.1371/journal.pone.0141894] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 10/14/2015] [Indexed: 11/25/2022] Open
Abstract
Since changes in lung microstructure are important indicators for (early stage) lung pathology, there is a need for quantifiable information of diagnostically challenging cases in a clinical setting, e.g. to evaluate early emphysematous changes in peripheral lung tissue. Considering alveoli as spherical air-spaces surrounded by a thin film of lung tissue allows deriving an expression for Carr-Purcell-Meiboom-Gill transverse relaxation rates R2 with a dependence on inter-echo time, local air-tissue volume fraction, diffusion coefficient and alveolar diameter, within a weak field approximation. The model relaxation rate exhibits the same hyperbolic tangent dependency as seen in the Luz-Meiboom model and limiting cases agree with Brooks et al. and Jensen et al. In addition, the model is tested against experimental data for passively deflated rat lungs: the resulting mean alveolar radius of RA = 31.46 ± 13.15 μm is very close to the literature value (∼34 μm). Also, modeled radii obtained from relaxometer measurements of ageing hydrogel foam (that mimics peripheral lung tissue) are in good agreement with those obtained from μCT images of the same foam (mean relative error: 0.06 ± 0.01). The model’s ability to determine the alveolar radius and/or air volume fraction will be useful in quantifying peripheral lung microstructure.
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Affiliation(s)
- Felix T. Kurz
- Department of Neuroradiology, Heidelberg University, Heidelberg, Germany
- Department of Radiology, German Cancer Research Center, Heidelberg, Germany
- * E-mail:
| | - Thomas Kampf
- Department of Experimental Physics 5, Würzburg University, Würzburg, Germany
| | - Lukas R. Buschle
- Department of Radiology, German Cancer Research Center, Heidelberg, Germany
| | | | - Sabine Heiland
- Department of Neuroradiology, Heidelberg University, Heidelberg, Germany
| | - Martin Bendszus
- Department of Neuroradiology, Heidelberg University, Heidelberg, Germany
| | - Christian H. Ziener
- Department of Neuroradiology, Heidelberg University, Heidelberg, Germany
- Department of Radiology, German Cancer Research Center, Heidelberg, Germany
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Buschle LR, Kurz FT, Kampf T, Triphan SM, Schlemmer HP, Ziener CH. Diffusion-mediated dephasing in the dipole field around a single spherical magnetic object. Magn Reson Imaging 2015; 33:1126-1145. [DOI: 10.1016/j.mri.2015.06.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Revised: 05/21/2015] [Accepted: 06/20/2015] [Indexed: 10/23/2022]
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Kellner E, Breyer T, Gall P, Müller K, Trippel M, Staszewski O, Stein F, Saborowski O, Dyakova O, Urbach H, Kiselev VG, Mader I. MR evaluation of vessel size imaging of human gliomas: Validation by histopathology. J Magn Reson Imaging 2015; 42:1117-25. [PMID: 25683112 DOI: 10.1002/jmri.24864] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Accepted: 01/19/2015] [Indexed: 11/10/2022] Open
Abstract
PURPOSE To compare the vessel size and the cerebral blood volume in human gliomas with histopathology. Vessel size imaging (VSI) is a dynamic susceptibility contrast method for the assessment of the vessel size in normal and pathological tissue. Previous publications in rodents showed a satisfactory conformity with the vessel size derived from histopathology. To assess the clinical value, further, the progression-free interval was determined and correlated. MATERIALS AND METHODS Twenty-five gliomas (WHO grade °II [n = 10], °III [n = 3], °IV [n = 12]) were prospectively included and received a stereotaxic biopsy after VSI. The vessel size and the cerebral blood volume (CBV) were calculated in regions of interest at the tumor edge and correlated with the vessel size measured by histopathology. RESULTS Both VSI and CBV showed a good correlation with the vessel size in histopathology (up to r = 0.84, P < 0.001, and r = 0.62, P < 0.001, respectively). Slope and offset of the linear regression (y = 0.77x + 0.36 μm) suggest that the size of normal capillaries is overestimated with VSI, while for grossly enlarged vessels an underestimation occurs. Both VSI and CBV were negatively correlated with the progression-free interval (r = -0.57, P = 0.008, and r = -0.50, P = 0.025, respectively). CONCLUSION The correlation between VSI and vessel size from histopathology is in good accordance with the animal studies. The overestimation of small capillary sizes is also known from the animal trials. Vessel size and CBV showed similar results, both for the correlation with the histopathological vessel size and the progression-free interval.
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Affiliation(s)
- Elias Kellner
- Department of Radiology, Medical Physics, University Medical Center Freiburg, Germany
| | - Tobias Breyer
- Department of Neuroradiology, University Medical Center Freiburg, Germany
| | - Peter Gall
- Siemens AG, Healthcare Sector, Erlangen, Germany
| | - Klaus Müller
- Department of Neuropathology, University Medical Center Freiburg, Germany
| | - Michael Trippel
- Department of Stereotactic Neurosurgery, University Medical Center Freiburg, Germany
| | - Ori Staszewski
- Department of Neuropathology, University Medical Center Freiburg, Germany
| | - Florian Stein
- Department of Neuropathology, University Medical Center Freiburg, Germany
| | - Olaf Saborowski
- Department of Neuroradiology, University Medical Center Freiburg, Germany
| | - Olga Dyakova
- Department of Radiology, Medical Physics, University Medical Center Freiburg, Germany
| | - Horst Urbach
- Department of Neuroradiology, University Medical Center Freiburg, Germany
| | - Valerij G Kiselev
- Department of Radiology, Medical Physics, University Medical Center Freiburg, Germany
| | - Irina Mader
- Department of Neuroradiology, University Medical Center Freiburg, Germany
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Troprès I, Pannetier N, Grand S, Lemasson B, Moisan A, Péoc'h M, Rémy C, Barbier EL. Imaging the microvessel caliber and density: Principles and applications of microvascular MRI. Magn Reson Med 2014; 73:325-41. [DOI: 10.1002/mrm.25396] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Revised: 07/08/2014] [Accepted: 07/11/2014] [Indexed: 12/22/2022]
Affiliation(s)
- Irène Troprès
- IRMaGe; Université Grenoble Alpes; Grenoble France
- UMS 3552; CNRS; Grenoble France
- US 017; INSERM; Grenoble France
- IRMaGe, Hôpital Michallon; Centre Hospitalier Universitaire de Grenoble; Grenoble France
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France. INSERM; U836 Grenoble France
| | - Nicolas Pannetier
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
| | - Sylvie Grand
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
- CLUNI, Hôpital Michallon; Centre Hospitalier Universitaire de Grenoble; Grenoble France
| | - Benjamin Lemasson
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
| | - Anaïck Moisan
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
| | - Michel Péoc'h
- Service d'anatomo-pathologie; Centre Hospitalier Universitaire de Saint Etienne; Saint-Etienne France
- EA 2521; Université Jean Monnet; Saint-Etienne France
| | - Chantal Rémy
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
| | - Emmanuel L. Barbier
- Université Joseph Fourier; Grenoble Institut des Neurosciences; Grenoble France
- INSERM; U836 Grenoble France
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van de Maat GH, de Leeuw H, Seevinck PR, van den Bosch MAAJ, Nijsen JFW, Bakker CJG. Simultaneous R2*, R2, and R2′ quantification by combining S0estimation of the free induction decay with a single spin echo: A single acquisition method for R2insensitive quantification of holmium-166-loaded microspheres. Magn Reson Med 2014; 73:273-83. [DOI: 10.1002/mrm.25138] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Revised: 12/19/2013] [Accepted: 12/31/2013] [Indexed: 01/14/2023]
Affiliation(s)
- G. H. van de Maat
- Image Sciences Institute; University Medical Center Utrecht; Utrecht The Netherlands
| | - H. de Leeuw
- Image Sciences Institute; University Medical Center Utrecht; Utrecht The Netherlands
| | - P. R. Seevinck
- Image Sciences Institute; University Medical Center Utrecht; Utrecht The Netherlands
| | - M. A. A. J. van den Bosch
- Department of Radiology and Nuclear Medicine; University Medical Center Utrecht; Utrecht The Netherlands
| | - J. F. W. Nijsen
- Department of Radiology and Nuclear Medicine; University Medical Center Utrecht; Utrecht The Netherlands
| | - C. J. G. Bakker
- Department of Radiology and Nuclear Medicine; University Medical Center Utrecht; Utrecht The Netherlands
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Kurz FT, Kampf T, Heiland S, Bendszus M, Schlemmer HP, Ziener CH. Theoretical model of the single spin-echo relaxation time for spherical magnetic perturbers. Magn Reson Med 2014; 71:1888-95. [DOI: 10.1002/mrm.25196] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2013] [Revised: 02/07/2014] [Accepted: 02/07/2014] [Indexed: 02/01/2023]
Affiliation(s)
- Felix T. Kurz
- Division of Neuroradiology, Department of Neurology; University of Heidelberg; INF 400 69120 Heidelberg Germany
| | - Thomas Kampf
- Department of Experimental Physics 5; University of Würzburg; Am Hubland 97074 Würzburg Germany
| | - Sabine Heiland
- Division of Neuroradiology, Department of Neurology; University of Heidelberg; INF 400 69120 Heidelberg Germany
| | - Martin Bendszus
- Division of Neuroradiology, Department of Neurology; University of Heidelberg; INF 400 69120 Heidelberg Germany
| | - Heinz-Peter Schlemmer
- Department of Radiology (E010); German Cancer Research Center; INF 280 69120 Heidelberg Germany
| | - Christian H. Ziener
- Department of Radiology (E010); German Cancer Research Center; INF 280 69120 Heidelberg Germany
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Issa B, Obaidat IM, Albiss BA, Haik Y. Magnetic nanoparticles: surface effects and properties related to biomedicine applications. Int J Mol Sci 2013; 14:21266-305. [PMID: 24232575 PMCID: PMC3856004 DOI: 10.3390/ijms141121266] [Citation(s) in RCA: 322] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 10/10/2013] [Accepted: 10/11/2013] [Indexed: 11/16/2022] Open
Abstract
Due to finite size effects, such as the high surface-to-volume ratio and different crystal structures, magnetic nanoparticles are found to exhibit interesting and considerably different magnetic properties than those found in their corresponding bulk materials. These nanoparticles can be synthesized in several ways (e.g., chemical and physical) with controllable sizes enabling their comparison to biological organisms from cells (10–100 μm), viruses, genes, down to proteins (3–50 nm). The optimization of the nanoparticles’ size, size distribution, agglomeration, coating, and shapes along with their unique magnetic properties prompted the application of nanoparticles of this type in diverse fields. Biomedicine is one of these fields where intensive research is currently being conducted. In this review, we will discuss the magnetic properties of nanoparticles which are directly related to their applications in biomedicine. We will focus mainly on surface effects and ferrite nanoparticles, and on one diagnostic application of magnetic nanoparticles as magnetic resonance imaging contrast agents.
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Affiliation(s)
- Bashar Issa
- Department of Physics, College of Science, United Arab Emirates University, Al Ain, 15551, UAE; E-Mail:
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +971-3-713-6316; Fax: +971-3-713-6944
| | - Ihab M. Obaidat
- Department of Physics, College of Science, United Arab Emirates University, Al Ain, 15551, UAE; E-Mail:
| | - Borhan A. Albiss
- Superconductivity & Magnetic Measurements Laboratory, Physics Department, Jordan University of Science and Technology, Irbid 22110, Jordan; E-Mail:
| | - Yousef Haik
- Department of Mechanical Engineering, College of Engineering, United Arab Emirates University, Al Ain, 15551, UAE; E-Mail:
- Centre of Research Excellence in Nanobioscience 203, Eberhart Building University of North Carolina, Greensboro, NC 27412, USA
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Bakker CJ, van Gorp JS, Verwoerd JL, Westra AH, Bouwman JG, Zijlstra F, Seevinck PR. Multiple single-point imaging (mSPI) as a tool for capturing and characterizing MR signals and repetitive signal disturbances with high temporal resolution: The MRI scanner as a high-speed camera. Magn Reson Imaging 2013; 31:1037-43. [DOI: 10.1016/j.mri.2013.04.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Revised: 04/26/2013] [Accepted: 04/27/2013] [Indexed: 11/30/2022]
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Yablonskiy DA, Sukstanskii AL, He X. Blood oxygenation level-dependent (BOLD)-based techniques for the quantification of brain hemodynamic and metabolic properties - theoretical models and experimental approaches. NMR IN BIOMEDICINE 2013; 26:963-86. [PMID: 22927123 PMCID: PMC3510357 DOI: 10.1002/nbm.2839] [Citation(s) in RCA: 101] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2012] [Revised: 06/19/2012] [Accepted: 06/22/2012] [Indexed: 05/06/2023]
Abstract
The quantitative evaluation of brain hemodynamics and metabolism, particularly the relationship between brain function and oxygen utilization, is important for the understanding of normal human brain operation, as well as the pathophysiology of neurological disorders. It can also be of great importance for the evaluation of hypoxia within tumors of the brain and other organs. A fundamental discovery by Ogawa and coworkers of the blood oxygenation level-dependent (BOLD) contrast opened up the possibility to use this effect to study brain hemodynamic and metabolic properties by means of MRI measurements. Such measurements require the development of theoretical models connecting the MRI signal to brain structure and function, and the design of experimental techniques allowing MR measurements to be made of the salient features of theoretical models. In this review, we discuss several such theoretical models and experimental methods for the quantification of brain hemodynamic and metabolic properties. The review's main focus is on methods for the evaluation of the oxygen extraction fraction (OEF) based on the measurement of the blood oxygenation level. A combination of the measurement of OEF and the cerebral blood flow (CBF) allows an evaluation to be made of the cerebral metabolic rate of oxygen consumption (CMRO2 ). We first consider in detail the magnetic properties of blood - magnetic susceptibility, MR relaxation and theoretical models of the intravascular contribution to the MR signal under different experimental conditions. We then describe a 'through-space' effect - the influence of inhomogeneous magnetic fields, created in the extravascular space by intravascular deoxygenated blood, on the formation of the MR signal. Further, we describe several experimental techniques taking advantage of these theoretical models. Some of these techniques - MR susceptometry and T2 -based quantification of OEF - utilize the intravascular MR signal. Another technique - quantitative BOLD - evaluates OEF by making use of through-space effects. In this review, we target both scientists just entering the MR field and more experienced MR researchers interested in the application of advanced BOLD-based techniques to the study of the brain in health and disease.
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Patil V, Jensen JH, Johnson G. Intravascular contrast agent T2* relaxivity in brain tissue. NMR IN BIOMEDICINE 2013; 26:392-399. [PMID: 23225224 PMCID: PMC3672249 DOI: 10.1002/nbm.2876] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2012] [Revised: 08/27/2012] [Accepted: 09/02/2012] [Indexed: 06/01/2023]
Abstract
Dynamic susceptibility-weighted contrast-enhanced (DSC) MRI perfusion measurements depend on estimating intravascular contrast agent (CA) concentrations (C) from signal intensity changes in T2*-weighted images after bolus injection. Generally, linearity is assumed between relaxation and C, but previous studies have shown that compartmentalization of CA and secondary magnetic field perturbations generate deviations from linearity. Physical phantoms using bulk blood have been used to empirically determine the relationship between relaxation rate and C in large vessels. However, the relaxivity of CA in the microvasculature is not easily measured since constructing appropriate phantoms is difficult. Instead, theoretical relaxivity models have been developed. In this study, we empirically tested a non-linear expression based on static dephasing regime (SDR) and linear approximation. Signal-time curves in white (WM) and grey matter (GM) were converted to concentration time curves (CTCs) using both expressions. Parameters for both linear and non-linear formulations were adjusted to give a best agreement between cerebral blood volumes (CBV) calculated from WM and arterial CTCs in a group of normal subjects scanned at 3T. Optimized parameters were used to calculate blood volume in WM and GM in healthy subjects scanned at 3T and in meningioma patients scanned at 1.5T. Results from this study showed that a non-linear SDR formulation gave an acceptable functional form for tissue relaxivity, giving reliable CBV estimates at different field strengths and echo times.
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Affiliation(s)
- Vishal Patil
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York
| | - Jens H. Jensen
- Department of Radiology and Radiological Science, Medical University of South Carolina, Charleston, South Carolina
| | - Glyn Johnson
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York
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Abstract
The quantification of bolus-tracking MRI techniques remains challenging. The acquisition usually relies on one contrast and the analysis on a simplified model of the various phenomena that arise within a voxel, leading to inaccurate perfusion estimates. To evaluate how simplifications in the interstitial model impact perfusion estimates, we propose a numerical tool to simulate the MR signal provided by a dynamic contrast enhanced (DCE) MRI experiment. Our model encompasses the intrinsic and relaxations, the magnetic field perturbations induced by susceptibility interfaces (vessels and cells), the diffusion of the water protons, the blood flow, the permeability of the vessel wall to the the contrast agent (CA) and the constrained diffusion of the CA within the voxel. The blood compartment is modeled as a uniform compartment. The different blocks of the simulation are validated and compared to classical models. The impact of the CA diffusivity on the permeability and blood volume estimates is evaluated. Simulations demonstrate that the CA diffusivity slightly impacts the permeability estimates ( for classical blood flow and CA diffusion). The effect of long echo times is investigated. Simulations show that DCE-MRI performed with an echo time may already lead to significant underestimation of the blood volume (up to 30% lower for brain tumor permeability values). The potential and the versatility of the proposed implementation are evaluated by running the simulation with realistic vascular geometry obtained from two photons microscopy and with impermeable cells in the extravascular environment. In conclusion, the proposed simulation tool describes DCE-MRI experiments and may be used to evaluate and optimize acquisition and processing strategies.
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Saha I, Chaffee KE, Duanmu C, Woods BM, Stokes AM, Buck LE, Walkup LL, Sattenapally N, Huggenvik J, Gao Y, Goodson BM. pH-Sensitive MR Responses Induced by Dendron-Functionalized SPIONs. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2013; 117:1893-1903. [PMID: 23494078 PMCID: PMC3594091 DOI: 10.1021/jp306128v] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
We report a series of investigations of the pH-sensitive magnetic resonance (MR) responses of various surface-functionalized SPIONs (superparamagnetic iron oxide nanoparticles). First, functionalization of ~12 nm highly monocrystalline SPION cores with three different generations of melamine-dendrons was optimized to give agents with high molar relaxivities (e.g. R2m ~300 mM-1·s-1 at 7 T and R1m ~20-30 mM-1·s-1 at 0.5 T) and excellent aqueous stabilities. Molar relaxivities were found to exhibit great sensitivity to pH at physiologically-relevant ionic strengths, with sharp inflections observed at pH values near the pKa of the melamine monomer. The strength of the effect was observed to grow with increasing dendron generation (with concomitant shift in the position of the main pH inflection). Opposing behavior in R2m and R2m * trends may be exploited to provide a ratiometric MR response to pH. Combined with TEM and corresponding MR measurements from solutions of varying ionic strengths, these results are consistent with the pH-sensitive behavior originating from transient, reversible SPION clustering modulated by an interplay between SPION surface charge density and solution ionic strength. Studies of SPION cellular uptake and MR response in HeLa cell cultures are also presented. Finally, comparisons with the MR responses of SPIONs with alternative functionalities-derivatives of nitrilotriacetic acid or poly(1-vinylimidazole)-indicate that these types of pH-sensitive MR responses can be highly dependent upon the chemical composition of the surface species (and thus amenable to modulation through rational design).
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Affiliation(s)
- Indrajit Saha
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Kathleen E. Chaffee
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Chuansong Duanmu
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Brooke M. Woods
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | | | - Laura E. Buck
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Laura L. Walkup
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Narsimha Sattenapally
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Jodi Huggenvik
- Department of Physiology, Southern Illinois University, Carbondale, IL 62901
| | - Yong Gao
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
| | - Boyd M. Goodson
- Department of Chemistry and Biochemistry, Southern Illinois University, Carbondale, IL 62901
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Kotek G, van Tiel ST, Wielopolski PA, Houston GC, Krestin GP, Bernsen MR. Cell quantification: evolution of compartmentalization and distribution of iron-oxide particles and labeled cells. CONTRAST MEDIA & MOLECULAR IMAGING 2012; 7:195-203. [DOI: 10.1002/cmmi.481] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gyula Kotek
- Department of Radiology; Erasmus MC; Rotterdam The Netherlands
| | | | | | - Gavin C. Houston
- Applied Science Laboratory; General Electric Healthcare; The Netherlands
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Rioux JA, Brewer KD, Beyea SD, Bowen CV. Quantification of superparamagnetic iron oxide with large dynamic range using TurboSPI. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 216:152-160. [PMID: 22364896 DOI: 10.1016/j.jmr.2012.01.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2011] [Revised: 01/24/2012] [Accepted: 01/26/2012] [Indexed: 05/31/2023]
Abstract
This work proposes the use of TurboSPI, a multi-echo single point imaging sequence, for the quantification of labeled cells containing moderate to high concentrations of iron oxide contrast agent. At each k-space location, TurboSPI acquires several hundred time points during a spin echo, permitting reliable relaxation rate mapping of large-R(2)(∗) materials. An automatic calibration routine optimizes image quality by promoting coherent alignment of spin and stimulated echoes throughout the multi-echo train, and this calibration is sufficiently robust for in vivo applications. In vitro relaxation rate measurements of SPIO-loaded cervical cancer cells exhibit behavior consistent with theoretical predictions of the static dephasing regime in the spin echo case; the relaxivity measured with TurboSPI was 10.47±2.3 s(-1)/mG, comparable to the theoretical value of 10.78 s(-1)/mG. Similar measurements of micron-sized iron oxide particles (0.96 μm and 1.63 μm diameter) show a reduced relaxivity of 8.06±0.68 s(-1)/mG and 7.13±0.31 s(-1)/mG respectively, indicating that the static dephasing criterion was not met. Nonetheless, accurate quantification of such particles is demonstrated up to R(2)(∗)=900 s(-1), with a potentially higher upper limit for loaded cells having a more favorable R(2)('):R(2) ratio. Based on the cells used in this study, reliable quantification of cells loaded with 10 pg of iron per cell should be possible up to a density of 27 million cells/mL. Such quantification will be of crucial importance to the development of longitudinal monitoring for cellular therapy and other procedures using iron-labeled cells.
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Affiliation(s)
- James A Rioux
- Institute for Biodiagnostics (Atlantic), National Research Council, 1796 Summer Street, Suite 3900, Halifax, Nova Scotia, Canada B3H 3A7.
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Otto R, Ferguson MR, Marro K, Grinstead JW, Friedman SD. Limitations of using logarithmic transformation and linear fitting to estimate relaxation rates in iron-loaded liver. Pediatr Radiol 2011; 41:1259-65. [PMID: 21607600 DOI: 10.1007/s00247-011-2082-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/08/2010] [Revised: 02/15/2011] [Accepted: 03/14/2011] [Indexed: 12/01/2022]
Abstract
BACKGROUND MRI is being increasingly used to evaluate tissue relaxation in the setting of iron overload. Diagnostic accuracy is strongly dependent upon the acquisition and analysis methods employed. Typically, a multi-echo train of relaxation data is acquired, the resulting curve is fit using a non-linear (exponential) function, and the derived relaxation time is converted to iron concentration by a calibration formula derived from paired MRI-biopsy samples. A theoretically valid processing alternative is to fit a straight line to the relaxation data after logarithmic transformation (log-linear). This log-linear method is more computationally efficient, allowing a full relaxation map to be generated in near real time. This method is present on all scanner platforms and has been published for use in assessing iron concentration. These factors imply methodological validity. OBJECTIVE To use in vivo and simulation data to show that log-linear fitting can generate highly erroneous relaxation results in iron-loaded tissues. MATERIALS AND METHODS After IRB approval, exponential and linear fitting were compared in a cohort of 20 patients being evaluated for hepatic iron overload. Simulation analyses were performed to characterize the main factors impacting derived results. RESULTS In human subjects, log-linear analyses demonstrated gross deviation from exponential results at a moderate relaxation shortening (T2* ~5 ms). Simulation analyses demonstrated that the discrepancy was caused by noise effects and additional signal components violating mono-exponential function shape. CONCLUSION Log-linear processing results in increasingly erroneous estimation of T2* with iron-loading. Therefore, this method should not be employed for measurement of relaxation behavior in clinical samples.
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Affiliation(s)
- Randolph Otto
- Department of Radiology, Seattle Children's Hospital, 4800 Sandpoint Way, Room R4488, Seattle, WA 98105, USA
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Norek M, Peters JA. MRI contrast agents based on dysprosium or holmium. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2011; 59:64-82. [PMID: 21600356 DOI: 10.1016/j.pnmrs.2010.08.002] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2010] [Accepted: 08/31/2010] [Indexed: 05/30/2023]
Affiliation(s)
- Małgorzata Norek
- Biocatalysis and Organic Chemistry, Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
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Marro K, Otto R, Kolokythas O, Shimamura A, Sanders JE, McDonald GB, Friedman SD. A simulation-based comparison of two methods for determining relaxation rates from relaxometry images. Magn Reson Imaging 2011; 29:497-506. [PMID: 21333480 DOI: 10.1016/j.mri.2010.11.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2010] [Revised: 09/27/2010] [Accepted: 11/28/2010] [Indexed: 10/18/2022]
Abstract
When assessing liver iron content using relaxometry, an average relaxation rate (R1, R2 or R2*) is usually determined from a region of interest or the entire liver. This is commonly performed by fitting the signal decay in individual voxels to an appropriate relaxation function. The voxel-level parameters resulting from the fits are combined to determine the average relaxation rate, and an empirically derived calibration curve is used to convert this single value to iron content. The goal of this study was to compare the precision and accuracy of this voxel-wise fitting to an alternative method that relies on first averaging the signals from all voxels within the region of interest and then determining the relaxation rate from a single fit. Systematic differences were observed when both methods were applied to clinical images. Mathematical simulations were employed to determine which method provided more robust estimates of the true relaxation rate. The mathematical simulations were then expanded to include a range of conditions expected in typical relaxometry images. The results show that voxel-wise fitting skews the relaxation rate estimates and increases variance, particularly when the true relaxation rate is moderate to fast, as it would be in liver with high iron content. The potential impact of these results on clinical decisions is discussed.
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Affiliation(s)
- Kenneth Marro
- Department of Radiology, Seattle Children's Hospital, Seattle, WA, USA.
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Langkammer C, Krebs N, Goessler W, Scheurer E, Ebner F, Yen K, Fazekas F, Ropele S. Quantitative MR imaging of brain iron: a postmortem validation study. Radiology 2010; 257:455-62. [PMID: 20843991 DOI: 10.1148/radiol.10100495] [Citation(s) in RCA: 347] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
PURPOSE To investigate the relationship between transverse relaxation rates R2 and R2*, the most frequently used surrogate markers for iron in brain tissue, and chemically determined iron concentrations. MATERIALS AND METHODS This study was approved by the local ethics committee, and informed consent was obtained from each individual's next of kin. Quantitative magnetic resonance (MR) imaging was performed at 3.0 T in seven human postmortem brains in situ (age range at death, 38-81 years). Following brain extraction, iron concentrations were determined with inductively coupled plasma mass spectrometry in prespecified gray and white matter regions and correlated with R2 and R2* by using linear regression analysis. Hemispheric differences were tested with paired t tests. RESULTS The highest iron concentrations were found in the globus pallidus (mean ± standard deviation, 205 mg/kg wet mass ± 32), followed by the putamen (mean, 153 mg/kg wet mass ± 29), caudate nucleus (mean, 92 mg/kg wet mass ± 15), thalamus (mean, 49 mg/kg wet mass ± 11), and white matter regions. When all tissue samples were considered, transverse relaxation rates showed a strong linear correlation with iron concentration throughout the brain (r² = 0.67 for R2, r² = 0.90 for R2*; P < .001). In white matter structures, only R2* showed a linear correlation with iron concentration. Chemical analysis revealed significantly higher iron concentrations in the left hemisphere than in the right hemisphere, a finding that was not reflected in the relaxation rates. CONCLUSION Because of their strong linear correlation with iron concentration, both R2 and R2* can be used to measure iron deposition in the brain. Because R2* is more sensitive than R2 to variations in brain iron concentration and can detect differences in white matter, it is the preferred parameter for the assessment of iron concentration in vivo.
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Affiliation(s)
- Christian Langkammer
- Department of Neurology and Division of Neuroradiology, Medical University of Graz, Auenbruggerplatz 22, 8036 Graz, Austria
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Gardener AG, Francis ST, Prior M, Peters A, Gowland PA. Dependence of blood R2 relaxivity on CPMG echo-spacing at 2.35 and 7 T. Magn Reson Med 2010; 64:967-74. [DOI: 10.1002/mrm.22575] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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Klug G, Kampf T, Bloemer S, Bremicker J, Ziener CH, Heymer A, Gbureck U, Rommel E, Nöth U, Schenk WA, Jakob PM, Bauer WR. Intracellular and extracellular T1 and T2 relaxivities of magneto-optical nanoparticles at experimental high fields. Magn Reson Med 2010; 64:1607-15. [PMID: 20665826 DOI: 10.1002/mrm.22557] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2009] [Revised: 05/26/2010] [Accepted: 06/16/2010] [Indexed: 11/11/2022]
Abstract
This study reports the T(1) and T(2) relaxation rates of rhodamine-labeled anionic magnetic nanoparticles determined at 7, 11.7, and 17.6 T both in solution and after cellular internalization. Therefore cells were incubated with rhodamine-labeled anionic magnetic nanoparticles and were prepared at decreasing concentrations. Additionally, rhodamine-labeled anionic magnetic nanoparticles in solution were used for extracellular measurements. T(1) and T(2) were determined at 7, 11.7, and 17.6 T. T(1) times were determined with an inversion-recovery snapshot-flash sequence. T(2) times were obtained from a multispin-echo sequence. Inductively coupled plasma-mass spectrometry was used to determine the iron content in all samples, and r(1) and r(2) were subsequently calculated. The results were then compared with cells labeled with AMI-25 and VSOP C-200. In solution, the r(1) and r(2) of rhodamine-labeled anionic magnetic nanoparticles were 4.78/379 (7 T), 3.28/389 (11.7 T), and 2.00/354 (17.6 T). In cells, the r(1) and r(2) were 0.21/56 (7 T), 0.19/37 (11.7 T), and 0.1/23 (17.6 T). This corresponded to an 11- to 23-fold decrease in r(1) and an 8- to 15-fold decrease in r(2) . A decrease in r(1) was observed for AMI-25 and VSOP C-200. AMI-25 and VSOP exhibited a 2- to 8-fold decrease in r(2) . In conclusion, cellular internalization of iron oxide nanoparticles strongly decreased their T(1) and T(2) potency.
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Affiliation(s)
- Gert Klug
- Medizinische Klinik und Poliklinik I, Universitätsklinik Würzburg, Würzburg, Germany.
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Ziv K, Meir G, Harmelin A, Shimoni E, Klein E, Neeman M. Ferritin as a reporter gene for MRI: chronic liver over expression of H-ferritin during dietary iron supplementation and aging. NMR IN BIOMEDICINE 2010; 23:523-31. [PMID: 20175142 PMCID: PMC3558734 DOI: 10.1002/nbm.1491] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The iron storage protein, ferritin, provides an important endogenous MRI contrast that can be used to determine the level of tissue iron. In recent years the impact of modulating ferritin expression on MRI contrast and relaxation rates was evaluated by several groups, using genetically modified cells, viral gene transfer and transgenic animals. This paper reports the follow-up of transgenic mice that chronically over-expressed the heavy chain of ferritin (h-ferritin) in liver hepatocytes (liver-hfer mice) over a period of 2 years, with the aim of investigating the long-term effects of elevated level of h-ferritin on MR signal and on the well-being of the mice. Analysis revealed that aging liver-hfer mice, exposed to chronic elevated expression of h-ferritin, have increased R(2) values compared to WT. As expected for ferritin, R(2) difference was strongly enhanced at high magnetic field. Histological analysis of these mice did not reveal liver changes with prolonged over expression of ferritin, and no differences could be detected in other organs. Furthermore, dietary iron supplementation significantly affected MRI contrast, without affecting animal wellbeing, for both wildtype and ferritin over expressing transgenic mice. These results suggest the safety of ferritin over-expression, and support the use of h-ferritin as a reporter gene for MRI.
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Affiliation(s)
- Keren Ziv
- Department of Biological Regulation, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Gila Meir
- Department of Biological Regulation, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Alon Harmelin
- Department of Veterinary Resources, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Eyal Shimoni
- Department of Chemical Research Support, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Eugenia Klein
- Department of Chemical Research Support, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Michal Neeman
- Department of Biological Regulation, Weizmann Institute of Science, Rehovot 76100, Israel
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36
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Patil V, Johnson G, Jensen JH. Robust quantification of contrast agent (CA) concentration with magnetic field correlation (MFC) imaging. Magn Reson Med 2010; 62:1002-6. [PMID: 19672949 DOI: 10.1002/mrm.22099] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Contrast-enhanced perfusion studies of the brain by means magnetic resonance imaging (MRI) are used to estimate a number of important brain tissue parameters, including cerebral blood flow and volume. In order to calculate these parameters, the contrast agent (CA) concentration must first be estimated. This is usually accomplished by measurement of a nuclear magnetic resonance (NMR) relaxation rate with the assumption of a linear relationship between the rate and the CA concentration. However, such a linear relationship does not necessarily hold in biological tissues due to compartmentalization of the CA in either the intravascular or extracellular spaces. Here we propose an alternative MRI method of CA quantification based on measurement of the magnetic field correlation (MFC), which is theoretically predicted to have a robust quadratic dependence on the CA concentration even when the CA is compartmentalized. In this study, CA concentration estimation by means of MFC is shown to be more accurate than established methods based on relaxation rates in yeast cell suspensions.
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Affiliation(s)
- Vishal Patil
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016-3295, USA.
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37
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Seevinck PR, Seppenwoolde JH, Zwanenburg JJM, Nijsen JFW, Bakker CJG. FID sampling superior to spin-echo sampling for T2*-based quantification of holmium-loaded microspheres: theory and experiment. Magn Reson Med 2009; 60:1466-76. [PMID: 19026005 DOI: 10.1002/mrm.21785] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
This work demonstrates both theoretically and experimentally that multiple gradient-echo sampling of free induction decay (MGEFID) is superior to MGE sampling of spin echo (MGESE) for T2*-based quantification of holmium-loaded microspheres (HoMS). An interleaved sampling strategy was applied in great detail to characterize the MR signal behavior of FID and SE signals of gels and perfused rabbit livers containing HoMS in great detail. Diffusion sensitivity was demonstrated for MGESE sampling, resulting in non-exponential signal decay on both sides of the SE peak and in an underestimation of the HoMS concentration. Other than MGESE sampling, MGEFID sampling was demonstrated to be insensitive to diffusion, to exhibit exponential signal decay, and to allow accurate T2*-based quantification of HoMS. Furthermore, a fit procedure was proposed extending the upper limit of quantifiable R2* relaxation rates to at least 1500 sec(-1). With this post-processing step incorporated, MGEFID was shown to correctly estimate the integral amount of inhomogeneously distributed HoMS in liver tissue, up to a clinically relevant limit. All experimental findings could be explained with the theory of nuclear magnetic resonance (NMR) signal behavior in magnetically inhomogeneous tissues. HoMS were shown to satisfy the static dephasing regime when investigated with MGEFID and to violate the static dephasing conditions for MGESE at longer echo times typically used in SE.
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Affiliation(s)
- Peter R Seevinck
- Image Sciences Institute, Department of Radiology, University Medical Center Utrecht, The Netherlands.
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38
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Novikov DS, Kiselev VG. Transverse NMR relaxation in magnetically heterogeneous media. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2008; 195:33-39. [PMID: 18824379 DOI: 10.1016/j.jmr.2008.08.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2008] [Revised: 08/10/2008] [Accepted: 08/11/2008] [Indexed: 05/26/2023]
Abstract
We consider the NMR signal from a permeable medium with a heterogeneous Larmor frequency component that varies on a scale comparable to the spin-carrier diffusion length. We focus on the mesoscopic part of the transverse relaxation, that occurs due to dispersion of precession phases of spins accumulated during diffusive motion. By relating the spectral lineshape to correlation functions of the spatially varying Larmor frequency, we demonstrate how the correlation length and the variance of the Larmor frequency distribution can be determined from the NMR spectrum. We corroborate our results by numerical simulations, and apply them to quantify human blood spectra.
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Affiliation(s)
- D S Novikov
- Department of Physics, Yale University, New Haven, CT 06520, USA.
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39
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Baete SH, De Deene Y, Masschaele B, De Neve W. Microstructural analysis of foam by use of NMR R2 dispersion. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2008; 193:286-296. [PMID: 18534878 DOI: 10.1016/j.jmr.2008.05.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2008] [Revised: 05/09/2008] [Accepted: 05/14/2008] [Indexed: 05/26/2023]
Abstract
The spin-spin relaxation rate R2 (=1/T2) in hydrogel foams measured by use of a multiple spin echo sequence is found to be dependent on the echo time spacing. This property, referred to as R2-dispersion, originates to a large extent from molecular self-diffusion of water within internal field gradients that result from magnetic susceptibility differences between the gel and air phase. Another contribution to the R2 relaxation rate is surface relaxation. Numerical simulations are performed to investigate the relation between the foam microstructure (the mean air bubble radius and standard deviation of the air bubble radius) and foam composition properties (such as magnetic susceptibilities, diffusion coefficient and surface relaxivity) at one hand and the R2-dispersion at the other hand. The simulated R2-dispersions of gel foam are in agreement with the measured R2-dispersions. By correlating the R2-dispersion parameters and simulated microstructure properties a semi-empirical relationship is obtained that enables the mean air bubble size to be derived from measured R2-dispersion curves. The R2-derived mean air bubble size of a hydrogel foam is in agreement with the bubble size measured with X-ray micro-CT. This illustrates the feasibility of using 1H R2-dispersion measurements to determine the size of air bubbles in hydrogel foams and of alveoli in lung tissue.
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Affiliation(s)
- S H Baete
- Department of Radiotherapy, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium.
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40
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Matsumoto Y, Jasanoff A. T2 relaxation induced by clusters of superparamagnetic nanoparticles: Monte Carlo simulations. Magn Reson Imaging 2008; 26:994-8. [PMID: 18479873 DOI: 10.1016/j.mri.2008.01.039] [Citation(s) in RCA: 121] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2007] [Accepted: 01/14/2008] [Indexed: 11/26/2022]
Abstract
Clustering strongly affects the transverse (T2) relaxation induced by superparamagnetic nanoparticles in magnetic resonance experiments. In this study, we used Monte Carlo simulations to investigate systematically the relationship between T2 values and the geometric parameters of nanoparticle clusters. We computed relaxation as a function of particle size, number of particles per cluster, interparticle distance, and cluster shape (compact vs. linear). We found that compact clusters induced relaxation equivalent to similarly sized single particles. For small particles, the shape and density of clusters had a significant effect on T2. In contrast, for larger particles, T2 relaxation was relatively independent of cluster geometry until interparticle distances within a cluster exceeded ten times the particle diameter. Results from our simulations suggest principles for the design of nanoparticle aggregation-based sensors for MRI.
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Affiliation(s)
- Yuri Matsumoto
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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41
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Norek M, Kampert E, Zeitler U, Peters JA. Tuning of the Size of Dy2O3 Nanoparticles for Optimal Performance as an MRI Contrast Agent. J Am Chem Soc 2008; 130:5335-40. [DOI: 10.1021/ja711492y] [Citation(s) in RCA: 100] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Małgorzata Norek
- Biocatalysis and Organic Chemistry, Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands; High Field Magnet Laboratory (HFML), Radboud University, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands
| | - Erik Kampert
- Biocatalysis and Organic Chemistry, Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands; High Field Magnet Laboratory (HFML), Radboud University, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands
| | - Uli Zeitler
- Biocatalysis and Organic Chemistry, Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands; High Field Magnet Laboratory (HFML), Radboud University, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands
| | - Joop A. Peters
- Biocatalysis and Organic Chemistry, Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands; High Field Magnet Laboratory (HFML), Radboud University, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands
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Schenck JF, Zimmerman EA, Li Z, Adak S, Saha A, Tandon R, Fish KM, Belden C, Gillen RW, Barba A, Henderson DL, Neil W, O'Keefe T. High-field magnetic resonance imaging of brain iron in Alzheimer disease. Top Magn Reson Imaging 2007; 17:41-50. [PMID: 17179896 DOI: 10.1097/01.rmr.0000245455.59912.40] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
OBJECTIVES Increased iron deposition in the brain may occur in several neurodegenerative diseases, including Alzheimer disease (AD). Iron deposits shorten T2 relaxation times on T2-weighted magnetic resonance (MR) images. Iron-dependent contrast increases with magnetic field strength. We hypothesized that T2 mapping using 3 T MR imaging (MRI) can disclose differences between normal controls and AD subjects. METHODS High-resolution brain imaging protocols were developed and applied to 24 AD patients and 20 age-matched controls using 3 T MRI. Eight anatomical regions of interest were manually segmented, and T2 histograms were computed. A visual analysis technique, the heat map, was modified and applied to the large image data sets generated by these protocols. RESULTS A large number (163) of features from these histograms were examined, and 38 of these were significantly different (P < 0.05) between the groups. In the hippocampus, evidence was found for AD-related increases in iron deposition (shortened T2) and in the concentration of free tissue water (lengthened T2). Imaging of a section of postmortem brain before and after chemically extracting the iron established the presence of MRI-detectable iron in the hippocampus, cortex, and white matter in addition to brain regions traditionally viewed as containing high iron concentrations.
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Affiliation(s)
- John F Schenck
- General Electric Global Research Center, Schenectady, NY 12309, USA.
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Jensen JH, Lu H, Inglese M. Microvessel density estimation in the human brain by means of dynamic contrast-enhanced echo-planar imaging. Magn Reson Med 2007; 56:1145-50. [PMID: 17029231 DOI: 10.1002/mrm.21052] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Animal studies have shown that in vivo estimates of microvessel density in the brain may be obtained from an MRI-measurable index (Q) provided that a sufficiently high dose of an intravascular paramagnetic contrast agent is employed. Q is determined from the shifts in the transverse relaxation rates induced by the contrast agent, and a high dose is required for the validity of analytic expressions relating Q to the microvessel density. However, the steady-state imaging techniques used in these prior investigations are not appropriate for humans, as the required contrast agent dose is too large. Here results of a pilot study with three subjects are reported. The results suggest that reliable Q measurements can be performed in the human brain at 1.5 T by using an interleaved spin-echo (SE)/gradient-echo (GE) echo-planar imaging (EPI) sequence and a bolus injection of a triple dose of Gd-DTPA. Lower- and upper-bound estimates for the microvessel density were derived from the Q-values, and were found to be in reasonable accord with previously cited values determined by histology.
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Affiliation(s)
- Jens H Jensen
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016-3240, USA.
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Lebel RM, Menon RS, Bowen CV. Relaxometry model of strong dipolar perturbers for balanced-SSFP: application to quantification of SPIO loaded cells. Magn Reson Med 2006; 55:583-91. [PMID: 16450353 DOI: 10.1002/mrm.20799] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Magnetic resonance microscopy using magnetically labeled cells is an emerging discipline offering the potential for non-destructive studies targeting numerous cellular events in medical research. The present work develops a technique to quantify superparamagnetic iron-oxide (SPIO) loaded cells using fully balanced steady state free precession (b-SSFP) imaging. An analytic model based on phase cancellation was derived for a single particle and extended to predict mono-exponential decay versus echo time in the presence of multiple randomly distributed particles. Numerical models verified phase incoherence as the dominant contrast mechanism and evaluated the model using a full range of tissue decay rates, repetition times, and flip angles. Numerical simulations indicated a relaxation rate enhancement (DeltaR(2b)=0.412 gamma . LMD) proportional to LMD, the local magnetic dose (the additional sample magnetization due to the SPIO particles), a quantity related to the concentration of contrast agent. A phantom model of SPIO loaded cells showed excellent agreement with simulations, demonstrated comparable sensitivity to gradient echo DeltaR(*) (2) enhancements, and 14 times the sensitivity of spin echo DeltaR(2) measurements. We believe this model can be used to facilitate the generation of quantitative maps of targeted cell populations.
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Affiliation(s)
- R Marc Lebel
- Department of Medical Biophysics, University of Western Ontario, London, Ontario, Canada
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Ghugre NR, Coates TD, Nelson MD, Wood JC. Mechanisms of tissue-iron relaxivity: nuclear magnetic resonance studies of human liver biopsy specimens. Magn Reson Med 2006; 54:1185-93. [PMID: 16215963 PMCID: PMC2892963 DOI: 10.1002/mrm.20697] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
MRI is becoming an increasingly important tool to assess iron overload disorders, but the complex nature of proton-iron interactions has troubled noninvasive iron quantification. Intersite and intersequence variability as well as methodological inaccuracies have been limiting factors to its widespread clinical use. It is important to understand the underlying proton relaxation mechanisms within the (human) tissue environment to address these differences. In this respect, NMR relaxometry was performed on 10 fresh human liver biopsy specimens taken from patients with transfusion-dependent anemia. T1 (1/R1) inversion recovery, T2 (1/R2) single echo, and multiecho T2 CPMG measurements were performed on a 60-MHz Bruker Minispectrometer. NMR parameters were compared to quantitative iron levels and tissue histology. Relaxivities R1 and R2 both increased linearly with hepatic iron content, with R2 being more sensitive to iron. CPMG data were well described by a chemical-exchange model and predicted effective iron center dimensions consistent with hemosiderin-filled lysosomes. Nonexponential relaxation was evident at short refocusing intervals with R2 and amplitude behavior suggestive of magnetic susceptibility-based compartmentalization rather than anatomic subdivisions. NMR relaxometry of human liver biopsy specimens yields unique insights into the mechanisms of tissue-iron relaxivity.
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Affiliation(s)
- Nilesh R. Ghugre
- Division of Cardiology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
- Department of Radiology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
| | - Thomas D. Coates
- Department of Hematology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
| | - Marvin D. Nelson
- Department of Radiology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
| | - John C. Wood
- Division of Cardiology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
- Department of Radiology, Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, California, USA
- Correspondence to: John C. Wood, Division of Cardiology, Mailstop 34, Children’s Hospital Los Angeles, 4650 Sunset Boulevard, Los Angeles, CA 90027-0034, USA.
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Jensen JH, Chandra R, Ramani A, Lu H, Johnson G, Lee SP, Kaczynski K, Helpern JA. Magnetic field correlation imaging. Magn Reson Med 2006; 55:1350-61. [PMID: 16700026 DOI: 10.1002/mrm.20907] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A magnetic resonance imaging (MRI) method is presented for estimating the magnetic field correlation (MFC) associated with magnetic field inhomogeneities (MFIs) within biological tissues. The method utilizes asymmetric spin echoes and is based on a detailed theory for the effect of MFIs on nuclear magnetic resonance (NMR) signal decay. The validity of the method is supported with results from phantom experiments at 1.5 and 3 T, and human brain images obtained at 3 T are shown to demonstrate the method's feasibility. The preliminary results suggest that MFC imaging may be useful for the quantitative assessment of iron within the brain.
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Affiliation(s)
- Jens H Jensen
- Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, NY 10016, USA.
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Minard KR, Timchalk C, Corley RA. T2-shortening of 3He gas by magnetic microspheres. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2005; 173:90-96. [PMID: 15705517 DOI: 10.1016/j.jmr.2004.11.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2004] [Revised: 11/24/2004] [Indexed: 05/24/2023]
Abstract
In a gas-filled material like the lung parenchyma, the transverse relaxation time (T2) for 3He is shortened by the deposition of magnetic microspheres and rapid molecular diffusion through induced field distortions. Here, this unique relaxation process is described theoretically and predicted T2-shortening is validated using pressurized 3He gas in a foam model of alveolar airways. Results demonstrate that: (1) significant T2-shortening is induced by microsphere deposition, (2) shortened 3He T2s are accurately predicted, and (3) measured relaxation times are exploitable for quantifying local deposition patterns. Based on these findings the feasibility of imaging inhaled particulates in vivo with hyperpolarized 3He is examined and performance projections are formulated.
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Affiliation(s)
- Kevin R Minard
- Pacific Northwest National Laboratory, P.O. Box 999, Richland, WA 99352, USA.
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Parra-Robles J, Cross AR, Santyr GE. Theoretical signal-to-noise ratio and spatial resolution dependence on the magnetic field strength for hyperpolarized noble gas magnetic resonance imaging of human lungs. Med Phys 2005; 32:221-9. [PMID: 15719973 DOI: 10.1118/1.1833593] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
In hyperpolarized noble gas (HNG) magnetic resonance (MR) imaging, the available polarization is independent of magnetic field strength and for large radiofrequency (rf) coils, such as those used for chest imaging, the body noise becomes the primary noise source making signal-to-noise ratio (SNR) largely frequency independent at intermediate field strengths (0.1-0.5 T). Furthermore, the reduction in the transverse relaxation time, T2, of HNG in lungs with increasing field strength, results in a decrease in the achievable SNR at higher fields. In this work, the optimum field strength for HNG MR imaging was theoretically calculated in terms of both SNR and spatial resolution. SNR calculations used the principle of reciprocity and included contributions to the noise arising from both coil and sample losses in a chest-sized coil for lung imaging. The effects of susceptibility differences, transverse relaxation time, and diffusion were considered in the resolution calculations. The calculations show that the optimum field strength for HNG MR imaging of human lungs is between 0.1 and 0.6 T depending on gas type (helium or xenon) and sample size. At the field strengths currently used by conventional clinical proton MR imaging systems (1-3 T), the predicted SNR are 10%-50% lower than at the optimum field with only slightly worse spatial resolution (10%-20%). At higher fields (>3 T), however, the SNR degrades considerably reducing the achievable spatial resolution. Although HNG of the lung is still feasible at very low field strengths (<50 mT), the available SNR is much lower than at optimum fields and this reduces the achievable spatial resolution. These findings suggest that HNG imaging may be optimally performed at much lower field strengths (0.1-0.6 T) than conventional clinical proton MR imaging systems. This could considerably decrease cost, improve patient access, and reduce chemical shift and susceptibility artifacts and rf heating.
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Affiliation(s)
- Juan Parra-Robles
- Department of Physics, Carleton University, Ottawa, Ontario K1S 5B6, Canada
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Schenck JF, Zimmerman EA. High-field magnetic resonance imaging of brain iron: birth of a biomarker? NMR IN BIOMEDICINE 2004; 17:433-445. [PMID: 15523705 DOI: 10.1002/nbm.922] [Citation(s) in RCA: 246] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The brain has an unusually high concentration of iron, which is distributed in an unusual pattern unlike that in any other organ. The physiological role of this iron and the reasons for this pattern of distribution are not yet understood. There is increasing evidence that several neurodegenerative diseases are associated with altered brain iron metabolism. Understanding these dysmetabolic conditions may provide important information for their diagnosis and treatment. For many years the iron distribution in the human brain could be studied effectively only under postmortem conditions. This situation was changed dramatically by the finding that T2-weighted MR imaging at high field strength (initially 1.5 T) appears to demonstrate the pattern of iron distribution in normal brains and that this imaging technique can detect changes in brain iron concentrations associated with disease states. Up to the present time this imaging capability has been utilized in many research applications but it has not yet been widely applied in the routine diagnosis and management of neurodegenerative disorders. However, recent advances in the basic science of brain iron metabolism, the clinical understanding of neurodegenerative diseases and in MRI technology, particularly in the availability of clinical scanners operating at the higher field strength of 3 T, suggest that iron-dependent MR imaging may soon provide biomarkers capable of characterizing the presence and progression of important neurological disorders. Such biomarkers may be of crucial assistance in the development and utilization of effective new therapies for Alzheimer's and Parkinson's diseases, multiple sclerosis and other iron-related CNS disorders which are difficult to diagnose and treat.
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Affiliation(s)
- John F Schenck
- General Electric Global Research Center, Schenectady, New York 12309, USA.
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Himes N, Min JY, Lee R, Brown C, Shea J, Huang X, Xiao YF, Morgan JP, Burstein D, Oettgen P. In vivo MRI of embryonic stem cells in a mouse model of myocardial infarction. Magn Reson Med 2004; 52:1214-9. [PMID: 15508153 DOI: 10.1002/mrm.20220] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The therapeutic potential of administering stem cells to promote angiogenesis and myocardial tissue regeneration after infarction has recently been demonstrated. Given the advantages of using embryonic stem cells and mouse models of myocardial infarction for furthering the development of this therapeutic approach, the purpose of this study was to determine if embryonic stem cells could be loaded with superparamagnetic iron oxide (SPIO) particles and imaged in a mouse model of myocardial infarction over time using MRI. Mouse embryonic stem cells were labeled with SPIO particles. When incubated with 11.2, 22.4, and 44.8 microg Fe/ml of SPIO particles, cells took up increasing amounts of iron oxide. Embryonic stem cells loaded with SPIO compared to unlabeled cells had similar viability and proliferation profiles for up to 14 days. Free SPIO injected into infarcted myocardium was not observable within 12 hr after injection. After injection of three 10-microl aliquots of 10(7) SPIO-loaded cells/ml into infarcted myocardium, MRI demonstrated that the mouse embryonic stem cells were observable and could be seen for at least 5 weeks after injection. These findings support the ability of MRI to test the long-term therapeutic potential of embryonic stem cells in small animals in the setting of myocardial infarction.
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Affiliation(s)
- Nathan Himes
- Department of Radiology, Harvard Institutes of Medicine, Boston, Massachusetts 02115, USA
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