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Sahin S, Garnæs MF, Bennett A, Dwork N, Tang S, Liu X, Vaidya M, Wang ZJ, Larson PEZ. A pharmacokinetic model for hyperpolarized 13C-pyruvate MRI when using metabolite-specific bSSFP sequences. Magn Reson Med 2024; 92:1698-1713. [PMID: 38775035 DOI: 10.1002/mrm.30142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Revised: 04/05/2024] [Accepted: 04/16/2024] [Indexed: 06/07/2024]
Abstract
PURPOSE Metabolite-specific balanced SSFP (MS-bSSFP) sequences are increasingly used in hyperpolarized [1-13C]Pyruvate (HP 13C) MRI studies as they improve SNR by refocusing the magnetization each TR. Currently, pharmacokinetic models used to fit conversion rate constants, kPL and kPB, and rate constant maps do not account for differences in the signal evolution of MS-bSSFP acquisitions. METHODS In this work, a flexible MS-bSSFP model was built that can be used to fit conversion rate constants for these experiments. The model was validated in vivo using paired animal (healthy rat kidneys n = 8, transgenic adenocarcinoma of the mouse prostate n = 3) and human renal cell carcinoma (n = 3) datasets. Gradient echo (GRE) acquisitions were used with a previous GRE model to compare to the results of the proposed GRE-bSSFP model. RESULTS Within simulations, the proposed GRE-bSSFP model fits the simulated data well, whereas a GRE model shows bias because of model mismatch. For the in vivo datasets, the estimated conversion rate constants using the proposed GRE-bSSFP model are consistent with a previous GRE model. Jointly fitting the lactate T2 with kPL resulted in less precise kPL estimates. CONCLUSION The proposed GRE-bSSFP model provides a method to estimate conversion rate constants, kPL and kPB, for MS-bSSFP HP 13C experiments. This model may also be modified and used for other applications, for example, estimating rate constants with other hyperpolarized reagents or multi-echo bSSFP.
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Affiliation(s)
- Sule Sahin
- UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, Berkeley and University of California, San Francisco, California, USA
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | | | - Anna Bennett
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Nicholas Dwork
- Biomedical Informatics and Radiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA
| | | | - Xiaoxi Liu
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Manushka Vaidya
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Zhen Jane Wang
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Peder E Z Larson
- UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, Berkeley and University of California, San Francisco, California, USA
- Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
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Lechuga LM, Cho MM, Vail DM, Captini CM, Fain SB, Begovatz P. Feasibility and optimization of 19F MRI on a clinical 3T with a large field-of-view torso coil. Phys Med Biol 2024; 69:125002. [PMID: 38759675 PMCID: PMC11149172 DOI: 10.1088/1361-6560/ad4d50] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 04/30/2024] [Accepted: 05/17/2024] [Indexed: 05/19/2024]
Abstract
Objective.The objective of this work is to: (1) demonstrate fluorine-19 (19F) MRI on a 3T clinical system with a large field of view (FOV) multi-channel torso coil (2) demonstrate an example parameter selection optimization for a19F agent to maximize the signal-to-noise ratio (SNR)-efficiency for spoiled gradient echo (SPGR), balanced steady-state free precession (bSSFP), and phase-cycled bSSFP (bSSFP-C), and (3) validate detection feasibility inex vivotissues.Approach.Measurements were conducted on a 3.0T Discovery MR750w MRI (GE Healthcare, USA) with an 8-channel1H/19F torso coil (MRI Tools, Germany). Numerical simulations were conducted for perfluoropolyether to determine the theoretical parameters to maximize SNR-efficiency for the sequences. Theoretical parameters were experimentally verified, and the sensitivity of the sequences was compared with a 10 min acquisition time with a 3.125 × 3.125 × 3 mm3in-plane resolution. Feasibility of a bSSFP-C was also demonstrated in phantom andex vivotissues.Main Results. Flip angles (FAs) of 12 and 64° maximized the signal for SPGR and bSSFP, and validation of optimal FA and receiver bandwidth showed close agreement with numerical simulations. Sensitivities of 2.47, 5.81, and 4.44ms-0.5mM-1 and empirical detection limits of 20.3, 1.5, and 6.2 mM were achieved for SPGR, bSSFP, and bSSFP-C, respectively. bSSFP and bSSFP-C achieved 1.8-fold greater sensitivity over SPGR (p< 0.01).Significance.bSSFP-C was able to improve sensitivity relative to simple SPGR and reduce both bSSFP banding effects and imaging time. The sequence was used to demonstrate the feasibility of19F MRI at clinical FOVs and field strengths withinex-vivotissues.
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Affiliation(s)
- Lawrence M Lechuga
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States of America
| | - Monica M Cho
- Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States of America
| | - David M Vail
- Department of Medical Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, United States of America
| | - Christian M Captini
- Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States of America
- Carbone Cancer Center, University of Wisconsin, Madison, WI, United States of America
- Department of Biomedical Engineering, University of Wisconsin School of Engineering, Madison, WI, United States of America
| | - Sean B Fain
- Department of Radiology, University of Iowa, Iowa City, IA, United States of America
| | - Paul Begovatz
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States of America
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Assländer J, Gultekin C, Mao A, Zhang X, Duchemin Q, Liu K, Charlson RW, Shepherd TM, Fernandez-Granda C, Flassbeck S. Rapid quantitative magnetization transfer imaging: Utilizing the hybrid state and the generalized Bloch model. Magn Reson Med 2024; 91:1478-1497. [PMID: 38073093 DOI: 10.1002/mrm.29951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 10/30/2023] [Accepted: 11/14/2023] [Indexed: 02/03/2024]
Abstract
PURPOSE To explore efficient encoding schemes for quantitative magnetization transfer (qMT) imaging with few constraints on model parameters. THEORY AND METHODS We combine two recently proposed models in a Bloch-McConnell equation: the dynamics of the free spin pool are confined to the hybrid state, and the dynamics of the semi-solid spin pool are described by the generalized Bloch model. We numerically optimize the flip angles and durations of a train of radio frequency pulses to enhance the encoding of three qMT parameters while accounting for all eight parameters of the two-pool model. We sparsely sample each time frame along this spin dynamics with a three-dimensional radial koosh-ball trajectory, reconstruct the data with subspace modeling, and fit the qMT model with a neural network for computational efficiency. RESULTS We extracted qMT parameter maps of the whole brain with an effective resolution of 1.24 mm from a 12.6-min scan. In lesions of multiple sclerosis subjects, we observe a decreased size of the semi-solid spin pool and longer relaxation times, consistent with previous reports. CONCLUSION The encoding power of the hybrid state, combined with regularized image reconstruction, and the accuracy of the generalized Bloch model provide an excellent basis for efficient quantitative magnetization transfer imaging with few constraints on model parameters.
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Affiliation(s)
- Jakob Assländer
- Center for Biomedical Imaging, Department of Radiology, NYU School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU School of Medicine, New York, New York, USA
| | - Cem Gultekin
- Courant Institute of Mathematical Sciences, New York University, New York, New York, USA
| | - Andrew Mao
- Center for Biomedical Imaging, Department of Radiology, NYU School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU School of Medicine, New York, New York, USA
- Vilcek Institute of Graduate Biomedical Sciences, NYU School of Medicine, New York, New York, USA
| | - Xiaoxia Zhang
- Center for Biomedical Imaging, Department of Radiology, NYU School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU School of Medicine, New York, New York, USA
| | - Quentin Duchemin
- Laboratoire d'analyse et de mathématiques appliquées, Université Gustave Eiffel, Champs-sur-Marne, France
| | - Kangning Liu
- Center for Data Science, New York University, New York, New York, USA
| | - Robert W Charlson
- Department of Neurology, NYU School of Medicine, New York, New York, USA
| | - Timothy M Shepherd
- Center for Biomedical Imaging, Department of Radiology, NYU School of Medicine, New York, New York, USA
| | - Carlos Fernandez-Granda
- Courant Institute of Mathematical Sciences, New York University, New York, New York, USA
- Center for Data Science, New York University, New York, New York, USA
| | - Sebastian Flassbeck
- Center for Biomedical Imaging, Department of Radiology, NYU School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, NYU School of Medicine, New York, New York, USA
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Flassbeck S, Assländer J. Minimization of eddy current artifacts in sequences with periodic dynamics. Magn Reson Med 2024; 91:1067-1074. [PMID: 37994235 DOI: 10.1002/mrm.29945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 10/18/2023] [Accepted: 11/10/2023] [Indexed: 11/24/2023]
Abstract
PURPOSE To minimize eddy current artifacts in periodic pulse sequences with balanced gradient moments as, for example, used for quantitative MRI. THEORY AND METHODS Eddy current artifacts in balanced sequences result from large jumps in k-space. In quantitative MRI, one often samples some spin dynamics repeatedly while acquiring different parts of k-space. We swap individual k-space lines between different repetitions in order to minimize jumps in temporal succession without changing the overall trajectory. This reordering can be formulated as a traveling salesman problem and we tackle the discrete optimization with a simulated annealing algorithm. RESULTS Compared to the default ordering, we observe a substantial reduction of artifacts in the reconstructed images and the derived quantitative parameter maps. Comparing two variants of our algorithm, one that resembles the pairing approach originally proposed by Bieri et al., and one that minimizes all k-space jumps equally, we observe slightly lower artifact levels in the latter. CONCLUSION The proposed reordering scheme effectively reduces eddy current artifacts in sequences with balanced gradient moments. In contrast to previous approaches, we capitalize on the periodicity of the sampled signal dynamics, enabling both efficient k-space sampling and minimizing artifacts caused by eddy currents.
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Affiliation(s)
- Sebastian Flassbeck
- Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
| | - Jakob Assländer
- Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
- Center for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA
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He T, Zur Y, Montrazi ET, Frydman L. Phase-Incremented Steady-State Free Precession as an Alternate Route to High-Resolution NMR. J Am Chem Soc 2024; 146:3615-3621. [PMID: 38291738 PMCID: PMC10870713 DOI: 10.1021/jacs.3c12954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 01/20/2024] [Accepted: 01/22/2024] [Indexed: 02/01/2024]
Abstract
Pulsed Fourier transform nuclear magnetic resonance (FT-NMR) has reigned supreme in high-resolution, high-field spectroscopy─particularly when targeting complex liquid-state samples involving multiple sharp peaks spread over large spectral bandwidths. It is known, however, that if spectral resolution is not a must, the FT-based approach is not necessarily the optimal route for maximizing NMR sensitivity: if T2 ≈ T1, as often found in solutions, Carr's steady-state free-precession (SSFP) approach can in principle provide a superior signal-to-noise ratio per √(acquisition_time) (SNRt). A rapid train of pulses will then lead to a transverse component that reaches up to 50% of the thermal equilibrium magnetization, provided that pulses are applied at repetition times TR ≪ T2, T1, and that a single suitable offset is involved. It is generally assumed that having to deal with multiple chemical shifts deprives SSFP from its advantages. The present study revisits this assumption by introducing an approach whereby arbitrarily short SSFP-derived free induction decays (FIDs) can deliver high-resolution spectra, without suffering from peak broadenings or phase distortions. To achieve discrimination among nearby frequencies, signals arising from a series of regularly phase-increased excitation pulses are collected. Given SSFP's amplitude and phase sensitivity to the spins' offset, this enables the resolution of sites according to their chemical shift position. In addition, the extreme fold-over associated with SSFP acquisitions is dealt with by a customized discrete FT of the interpulse time-domain signal. Solution-state 13C NMR spectra which compare well with FT-NMR data in terms of sensitivity, bandwidth, and resolution can then be obtained.
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Affiliation(s)
- Tian He
- Department
of Chemical and Biological Physics, Weizmann
Institute, 7610001 Rehovot, Israel
- Department
of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Yuval Zur
- Insightec
Ltd, 3903203 Tirat Carmel, Israel
| | - Elton T. Montrazi
- Department
of Chemical and Biological Physics, Weizmann
Institute, 7610001 Rehovot, Israel
| | - Lucio Frydman
- Department
of Chemical and Biological Physics, Weizmann
Institute, 7610001 Rehovot, Israel
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6
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Wang Z, Feng X, Salerno M, Kramer CM, Meyer CH. Dynamic cardiac MRI with high spatiotemporal resolution using accelerated spiral-out and spiral-in/out bSSFP pulse sequences at 1.5 T. MAGMA (NEW YORK, N.Y.) 2023; 36:857-867. [PMID: 37665502 PMCID: PMC10667461 DOI: 10.1007/s10334-023-01116-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 08/06/2023] [Accepted: 08/16/2023] [Indexed: 09/05/2023]
Abstract
OBJECTIVE To develop two spiral-based bSSFP pulse sequences combined with L + S reconstruction for accelerated ungated, free-breathing dynamic cardiac imaging at 1.5 T. MATERIALS AND METHODS Tiny golden angle rotated spiral-out and spiral-in/out bSSFP sequences combined with view-sharing (VS), compressed sensing (CS), and low-rank plus sparse (L + S) reconstruction were evaluated and compared via simulation and in vivo dynamic cardiac imaging studies. The proposed methods were then validated against the standard cine, in terms of quantitative image assessment and qualitative quality rating. RESULTS The L + S method yielded the least residual artifacts and the best image sharpness among the three methods. Both spiral cine techniques showed clinically diagnostic images (score > 3). Compared to standard cine, there were significant differences in global image quality and edge sharpness for spiral cine techniques, while there was significant difference in image contrast for the spiral-out cine but no significant difference for the spiral-in/out cine. There was good agreement in left ventricular ejection fraction for both the spiral-out cine (- 1.6 [Formula: see text] 3.1%) and spiral-in/out cine (- 1.5 [Formula: see text] 2.8%) against standard cine. DISCUSSION Compared to the time-consuming standard cine (~ 5 min) which requires ECG-gating and breath-holds, the proposed spiral bSSFP sequences achieved ungated, free-breathing cardiac movies at a similar spatial (1.5 × 1.5 × 8 mm3) and temporal resolution (36 ms) per slice for whole heart coverage (10-15 slices) within 45 s, suggesting the clinical potential for improved patient comfort or for imaging patients with arrhythmias or who cannot hold their breath.
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Affiliation(s)
- Zhixing Wang
- Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA
| | - Xue Feng
- Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA
| | - Michael Salerno
- School of Medicine, University Medical Line, Stanford University, Stanford, CA, USA
| | - Christopher M Kramer
- Cardiovascular Division, Department of Medicine, University of Virginia, Charlottesville, VA, USA
- Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA
| | - Craig H Meyer
- Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
- Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA.
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7
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Ganter C. Approximate B 1 + scaling of the SSFP steady state. Magn Reson Med 2023; 89:2264-2269. [PMID: 36705048 DOI: 10.1002/mrm.29598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 01/09/2023] [Accepted: 01/09/2023] [Indexed: 01/28/2023]
Abstract
PURPOSE It is shown that the steady state of rapid, TR-periodic steady-state free precession (SSFP) sequences at small to moderate flip angles exhibits a universal, approximate scaling law with respect to variations of B 1 + $$ {B}_1^{+} $$ . Implications for the accuracy and precision of relaxometry experiments are discussed. METHODS The approximate scaling law is derived from and numerically tested against known analytical solutions. To assess the attainable estimator precision in a typical relaxometry experiment, we calculate the Cramér-Rao bound (CRB) and perform Monte Carlo (MC) simulations. RESULTS The approximate universal scaling holds well up to moderate flip angles. For pure steady state relaxometry, we observe a significant precision penalty for simultaneous estimation of R 1 $$ {R}_1 $$ and B 1 + $$ {B}_1^{+} $$ , whereas good R 2 $$ {R}_2 $$ estimates can be obtained without even knowing the correct actual flip angle. CONCLUSION Simultaneous estimation of R 1 $$ {R}_1 $$ and B 1 + $$ {B}_1^{+} $$ from a set of SSFP steady states alone is not advisable. Apart from separate B 1 + $$ {B}_1^{+} $$ measurements, the problem can be addressed by adding transient state information, but, depending on the situation, residual effects due to the scaling may still require some attention.
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Affiliation(s)
- Carl Ganter
- School of Medicine, Department of Diagnostic and Interventional Radiology, Klinikum rechts der Isar der TUM, Technical University of Munich, Munich, Germany
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8
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Azevedo CF, Jenista ER, Kaolawanich Y, Kim HW, Wendell DC, Alenezi F, Chen EL, Parker MA, Judd RM, Kim RJ. Assessment of myocardial lipomatous metaplasia using an optimized out-of-phase cine steady-state free-precession sequence: Validation and clinical implementation. NMR IN BIOMEDICINE 2022; 35:e4777. [PMID: 35633068 DOI: 10.1002/nbm.4777] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 05/23/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
Myocardial lipomatous metaplasia, which can serve as substrate for ventricular arrhythmias, is usually composed of regions in which there is an admixture of fat and nonfat tissue. Although dedicated sequences for the detection of fat are available, it would be time-consuming and burdensome to routinely use these techniques to image the entire heart of all patients as part of a typical cardiac MRI exam. Conventional steady-state free-precession (SSFP) cine imaging is insensitive to detecting myocardial regions with partial fatty infiltration. We developed an optimization process for SSFP imaging to set fat signal consistently "out-of-phase" with water throughout the heart, so that intramyocardial regions with partial volume fat would be detected as paradoxically dark regions. The optimized SSFP sequence was evaluated using a fat phantom, through simulations, and in 50 consecutive patients undergoing clinical cardiac MRI. Findings were validated using standard Dixon gradient-recalled-echo (GRE) imaging as the reference. Phantom studies of test tubes with diverse fat concentrations demonstrated good agreement between measured signal intensity and simulated values calculated using Bloch equations. In patients, a line of signal cancellation at the interface between myocardium and epicardial fat was noted in all cases, confirming that SSFP images were consistently out-of-phase throughout the entire heart. Intramyocardial dark regions identified on out-of-phase SSFP images were entirely dark throughout in 33 patients (66%) and displayed an India-ink pattern in 17 (34%). In all cases, dark intramyocardial regions were also seen in the same locations on out-of-phase GRE and were absent on in-phase GRE, confirming that these regions represent areas with partial fat. In conclusion, if appropriately optimized, SSFP cine imaging allows for consistent detection of myocardial fatty metaplasia in patients undergoing routine clinical cardiac MRI without the need for additional image acquisitions using dedicated fat-specific sequences.
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Affiliation(s)
- Clerio F Azevedo
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Elizabeth R Jenista
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Yodying Kaolawanich
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
- Division of Cardiology, Department of Medicine, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand
| | - Han W Kim
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - David C Wendell
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Fawaz Alenezi
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Enn-Ling Chen
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Michele A Parker
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Robert M Judd
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
- Department of Radiology, Duke University Medical Center, Durham, North Carolina, USA
| | - Raymond J Kim
- Duke Cardiovascular Magnetic Resonance Center, Duke University Medical Center, Durham, Durham, North Carolina, USA
- Division of Cardiology, Duke University Medical Center, Durham, North Carolina, USA
- Department of Radiology, Duke University Medical Center, Durham, North Carolina, USA
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Accuracy and repeatability of QRAPMASTER and MRF-vFA. Magn Reson Imaging 2021; 83:196-207. [PMID: 34506911 DOI: 10.1016/j.mri.2021.09.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 09/03/2021] [Accepted: 09/05/2021] [Indexed: 11/23/2022]
Abstract
Our purpose is to evaluate bias and repeatability of the quantitative MRI sequences QRAPMASTER, based on steady-state imaging, and variable Flip Angle MRF (MRF-VFA), based on the transient response. Both techniques are assessed with a standardized phantom and five volunteers on 1.5 T and 3 T clinical scanners. All scans were repeated eight times in consecutive weeks. In the phantom, the mean bias±95% confidence interval for T1 values with QRAPMASTER was 10 ± 10% on 1.5 T and 4 ± 13% on 3.0 T. The mean bias for T1 values with MRF-vFA was 21 ± 17% on 1.5 T and 9 ± 9% on 3.0 T. For T2 values the mean bias with QRAPMASTER was 12 ± 3% on 1.5 T and 23 ± 1% on 3.0 T. For T2 values the mean bias with MRF-vFA was 17 ± 1% on 1.5 T and 19 ± 2% on 3.0 T. QRAPMASTER estimated lower T1 and T2 values than MRF-vFA. Repeatability was good with low coefficients of variation (CoV). Mean CoV ± 95% confidence interval for T1 were 3.2 ± 0.4% on 1.5 T and 4.5 ± 0.8% on 3.0 T with QRAPMASTER and 2.7% ± 0.2% on 1.5 T and 2.5 ± 0.2% on 3.0 T with MRF-vFA. For T2 were 3.3 ± 1.9% on 1.5 T and 3.2 ± 0.6% on 3.0 T with QRAPMASTER and 2.0 ± 0.4% on 1.5 T and 5.7 ± 1.0% on 3.0 T with MRF-vFA. The in-vivo T1 and T2 are in the range of values previously reported by other authors. The in-vivo mean CoV ± 95% confidence interval in gray matter were for T1 1.7 ± 0.2% using QRAPMASTER and 0.7 ± 0.5% using MRF-vFA and for T2 were 0.9 ± 0.4% using QRAPMASTER and 2.4 ± 0.5% using MRF-vFA. In white matter were for T1 0.9 ± 0.3% using QRAPMASTER and 1.3 ± 1.1% using MRF-vFA and for T2 were 0.7 ± 0.4% using QRAPMASTER and 2.4 ± 0.4% using MRF-vFA. A GLM analysis showed that the variations in T1 and T2 mainly depend on the field strength and the subject, but not on the follow-up repetition in different days. This confirms the high repeatability of QRAPMASTER and MRF-vFA. In summary, QRAPMASTER and MRF-vFA on both systems were highly repeatable with moderate accuracy, providing results comparable to standard references. While repeatability was similar for both methods, QRAPMASTER was more accurate. QRAPMASTER is a tested commercial product but MRF-vFA is 4.77 times faster, which would ease the inclusion of quantitative relaxometry.
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10
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From signal-based to comprehensive magnetic resonance imaging. Sci Rep 2021; 11:17216. [PMID: 34446804 PMCID: PMC8390767 DOI: 10.1038/s41598-021-96791-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 08/09/2021] [Indexed: 12/03/2022] Open
Abstract
We present and evaluate a new insight into magnetic resonance imaging (MRI). It is based on the algebraic description of the magnetization during the transient response—including intrinsic magnetic resonance parameters such as longitudinal and transverse relaxation times (T1, T2) and proton density (PD) and experimental conditions such as radiofrequency field (B1) and constant/homogeneous magnetic field (B0) from associated scanners. We exploit the correspondence among three different elements: the signal evolution as a result of a repetitive sequence of blocks of radiofrequency excitation pulses and encoding gradients, the continuous Bloch equations and the mathematical description of a sequence as a linear system. This approach simultaneously provides, in a single measurement, all quantitative parameters of interest as well as associated system imperfections. Finally, we demonstrate the in-vivo applicability of the new concept on a clinical MRI scanner.
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11
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Neri F, Cappa SF, Mencarelli L, Momi D, Santarnecchi E, Rossi S. Brain Functional Correlates of Episodic Memory Using an Ecological Free Recall Task. Brain Sci 2021; 11:brainsci11070911. [PMID: 34356144 PMCID: PMC8303916 DOI: 10.3390/brainsci11070911] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 06/28/2021] [Accepted: 07/05/2021] [Indexed: 11/16/2022] Open
Abstract
Episodic Memory (EM) allows us to revive a past event through mental time-travel. The neural correlates of memories recollection have been identified in hippocampal regions and multiple neocortical areas, but few neuroimaging studies have used an ecological task such as a free recall of a structured story. Using an ecological fMRI-free recall (FR) task, we aimed to investigate the relevant recruitment of the brain networks associated with the story recollection process and its performance. Fourteen healthy participants listened to a brief story and were tested for Immediate-Recall (IR), a task that is widely used in a neuropsychological evaluation. Then, the subjects underwent an fMRI session, where they had to perform a free recall (FR) of the story subvocally. Finally, the participants were tested for Delayed-Recall (DR). IR and DR scores were significantly (r = 0.942; p < 0.001) correlated. FR enhanced the activity of the Language, the Left Executive Control, the Default Mode and the Precuneus brain networks, with the strongest BOLD signal localized in the left Angular Gyrus (AG) (p < 0.05; FWE-corrected). Furthermore, the story recall performance covaried with specific network activation patterns and the recruitment of the left anterior/posterior AG correlated, respectively, with higher/lower performance scores (p > 0.05). FR seems to be a promising task to investigate ecologically the neural correlates of EM. Moreover, the recruitment of the anterior AG might be a marker for an optimal functioning of the recall process. Preliminary outcomes lay the foundation for the investigation of the brain networks in the healthy and pathological elderly population during FR.
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Affiliation(s)
- Francesco Neri
- Siena Brain Investigation and Neuromodulation Lab (Si-BIN Lab), Unit of Neurology and Clinical Neurophysiology, Department of Medicine, Surgery and Neuroscience, University of Siena, 53100 Siena, SI, Italy; (L.M.); (D.M.); (S.R.)
- Correspondence: ; Tel.: +39-339-341-257
| | - Stefano F. Cappa
- Institute for Advanced Study, IUSS, 27100 Pavia, PV, Italy;
- IRCCS Mondino Foundation, 27100 Pavia, PV, Italy
| | - Lucia Mencarelli
- Siena Brain Investigation and Neuromodulation Lab (Si-BIN Lab), Unit of Neurology and Clinical Neurophysiology, Department of Medicine, Surgery and Neuroscience, University of Siena, 53100 Siena, SI, Italy; (L.M.); (D.M.); (S.R.)
| | - Davide Momi
- Siena Brain Investigation and Neuromodulation Lab (Si-BIN Lab), Unit of Neurology and Clinical Neurophysiology, Department of Medicine, Surgery and Neuroscience, University of Siena, 53100 Siena, SI, Italy; (L.M.); (D.M.); (S.R.)
| | - Emiliano Santarnecchi
- Berenson-Allen Center for Noninvasive Brain Stimulation, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA;
- Department of Cognitive Neurology, Harvard Medical School, Boston, MA 02115, USA
| | - Simone Rossi
- Siena Brain Investigation and Neuromodulation Lab (Si-BIN Lab), Unit of Neurology and Clinical Neurophysiology, Department of Medicine, Surgery and Neuroscience, University of Siena, 53100 Siena, SI, Italy; (L.M.); (D.M.); (S.R.)
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Brui EA, Rapacchi S, Bendahan D, Andreychenko AE. Comparative analysis of SINC-shaped and SLR pulses performance for contiguous multi-slice fast spin-echo imaging using metamaterial-based MRI. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2021; 34:929-938. [PMID: 34181118 DOI: 10.1007/s10334-021-00937-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 06/08/2021] [Accepted: 06/21/2021] [Indexed: 10/21/2022]
Abstract
OBJECTIVE To comparatively assess the performance of highly selective pulses computed with the SLR algorithm in fast-spin echo (FSE) within the current radiofrequency safety limits using a metamaterial-based coil for wrist magnetic resonance imaging. METHODS Apodized SINC pulses commonly used for clinical FSE sequences were considered as a reference. Selective SLR pulses with a time-bandwidth product of four were constructed in the MATPULSE program. Slice selection profiles in conventional T1-weighted and PD-weighted FSE wrist imaging pulse sequences were modeled using a Bloch equations simulator. Signal evolution was assessed in three samples with relaxation times equivalent to those in musculoskeletal tissues at 1.5T. Regular and SLR-based FSE pulse sequences were tested in a phantom experiment in a multi-slice mode with different gaps between slices and the direct saturation effect was investigated. RESULTS As compared to the regular FSEs with a conventional transmit coil, combining the utilization of the metadevice with SLR-based FSEs provided a 23 times lower energy deposition in a duty cycle. When the slice gap was decreased from 100 to 0%, the "slice cross-talk" effect reduced the signal intensity by 15.9-17.6% in the SLR-based and by 22.9-32.3% in the regular T1-weighted FSE; and by 0.0-6.4% in the SLR-based and by 0.3-9.3% in the regular PD-weighted FSE. DISCUSSION AND CONCLUSION SLR-based FSE together with the metadevice allowed to increase the slice selectivity while still being within the safe SAR limits. The "slice cross-talk" effects were conditioned by the number of echoes in the echo train, the repetition time, and T1 relaxation times. The approach was more beneficial for T1-weighted SLR-based FSE as compared to PD-weighted. The combination of the metadevice and SLR-based FSE offers a promising alternative for MR investigations that require scanning in a "Low-SAR" regime such as those for children, pregnant women, and patients with implanted devices.
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Affiliation(s)
- Ekaterina A Brui
- School of Physics and Engineering, ITMO University, Saint Petersburg, Russian Federation.
| | - Stanislas Rapacchi
- Centre de Résonance Magnétique Biologique et Médicale, Aix-Marseille Universite, CNRS, Marseille, France
| | - David Bendahan
- Centre de Résonance Magnétique Biologique et Médicale, Aix-Marseille Universite, CNRS, Marseille, France
| | - Anna E Andreychenko
- School of Physics and Engineering, ITMO University, Saint Petersburg, Russian Federation.,Department of Health Care of Moscow, Center of Diagnostics and Telemedicine Technologies, Research and Practical Clinical, Moscow, Russian Federation
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13
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Accelerated 3D whole-brain T1, T2, and proton density mapping: feasibility for clinical glioma MR imaging. Neuroradiology 2021; 63:1831-1851. [PMID: 33835238 PMCID: PMC8528802 DOI: 10.1007/s00234-021-02703-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 03/28/2021] [Indexed: 12/04/2022]
Abstract
Purpose Advanced MRI-based biomarkers offer comprehensive and quantitative information for the evaluation and characterization of brain tumors. In this study, we report initial clinical experience in routine glioma imaging with a novel, fully 3D multiparametric quantitative transient-state imaging (QTI) method for tissue characterization based on T1 and T2 values. Methods To demonstrate the viability of the proposed 3D QTI technique, nine glioma patients (grade II–IV), with a variety of disease states and treatment histories, were included in this study. First, we investigated the feasibility of 3D QTI (6:25 min scan time) for its use in clinical routine imaging, focusing on image reconstruction, parameter estimation, and contrast-weighted image synthesis. Second, for an initial assessment of 3D QTI-based quantitative MR biomarkers, we performed a ROI-based analysis to characterize T1 and T2 components in tumor and peritumoral tissue. Results The 3D acquisition combined with a compressed sensing reconstruction and neural network-based parameter inference produced parametric maps with high isotropic resolution (1.125 × 1.125 × 1.125 mm3 voxel size) and whole-brain coverage (22.5 × 22.5 × 22.5 cm3 FOV), enabling the synthesis of clinically relevant T1-weighted, T2-weighted, and FLAIR contrasts without any extra scan time. Our study revealed increased T1 and T2 values in tumor and peritumoral regions compared to contralateral white matter, good agreement with healthy volunteer data, and high inter-subject consistency. Conclusion 3D QTI demonstrated comprehensive tissue assessment of tumor substructures captured in T1 and T2 parameters. Aiming for fast acquisition of quantitative MR biomarkers, 3D QTI has potential to improve disease characterization in brain tumor patients under tight clinical time-constraints.
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14
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Metzner S, Wuebbeler G, Flassbeck S, Gatefait C, Kolbitsch C, Elster C. Bayesian uncertainty quantification for magnetic resonance fingerprinting. Phys Med Biol 2021; 66. [PMID: 33647894 DOI: 10.1088/1361-6560/abeae7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 03/01/2021] [Indexed: 11/11/2022]
Abstract
Magnetic Resonance Fingerprinting (MRF) is a promising technique for fast quantitative imaging of human tissue. In general, MRF is based on a sequence of highly undersampled MR images which are analyzed with a pre-computed dictionary. MRF provides valuable diagnostic parameters such as the $T_1$ and $T_2$ MR relaxation times. However, uncertainty characterization of dictionary-based MRF estimates for $T_1$ and $T_2$ has not been achieved so far, which makes it challenging to assess if observed differences in these estimates are significant and may indicate pathological changes of the underlying tissue. We propose a Bayesian approach for the uncertainty quantification of dictionary-based MRF which leads to probability distributions for $T_1$ and $T_2$ in every voxel. The distributions can be used to make probability statements about the relaxation times, and to assign uncertainties to their dictionary-based MRF estimates. All uncertainty calculations are based on the pre-computed dictionary and the observed sequence of undersampled MR images, and they can be calculated in short time. The approach is explored by analyzing MRF measurements of a phantom consisting of several tubes across which MR relaxation times are constant. The proposed uncertainty quantification is quantitatively consistent with the observed within-tube variability of estimated relaxation times. Furthermore, calculated uncertainties are shown to characterize well observed differences between the MRF estimates and the results obtained from high-accurate reference measurements. These findings indicate that a reliable uncertainty quantification is achieved. We also present results for simulated MRF data and an uncertainty quantification for an in vivo MRF measurement. MATLAB$^{\scriptsize \text{\textregistered}}$ source code implementing the proposed approach is made available.
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Affiliation(s)
- Selma Metzner
- Physikalisch-Technische Bundesanstalt, Berlin, GERMANY
| | - Gerd Wuebbeler
- Mathematical Modelling and Data Analysis, Physikalisch - Technische Bundesanstalt, Abbestrasse 2-12, Berlin, D-10587, GERMANY
| | | | - Constance Gatefait
- Physikalisch-Technische Bundesanstalt Abteilung 8 Medizinische Physik und metrologische Informationstechnologie, Berlin, Berlin, GERMANY
| | - Christoph Kolbitsch
- Physikalisch-Technische Bundesanstalt, Abbestraße 2-12, Berlin, 10587, GERMANY
| | - Clemens Elster
- Data Analysis and Measurement Uncertainty, Physikalisch-Technische Bundesanstalt, Abbestrasse 2-12, D-10587 Berlin, Berlin, GERMANY
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15
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Gómez PA, Cencini M, Golbabaee M, Schulte RF, Pirkl C, Horvath I, Fallo G, Peretti L, Tosetti M, Menze BH, Buonincontri G. Rapid three-dimensional multiparametric MRI with quantitative transient-state imaging. Sci Rep 2020; 10:13769. [PMID: 32792618 PMCID: PMC7427097 DOI: 10.1038/s41598-020-70789-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 06/22/2020] [Indexed: 11/30/2022] Open
Abstract
Novel methods for quantitative, transient-state multiparametric imaging are increasingly being demonstrated for assessment of disease and treatment efficacy. Here, we build on these by assessing the most common Non-Cartesian readout trajectories (2D/3D radials and spirals), demonstrating efficient anti-aliasing with a k-space view-sharing technique, and proposing novel methods for parameter inference with neural networks that incorporate the estimation of proton density. Our results show good agreement with gold standard and phantom references for all readout trajectories at 1.5 T and 3 T. Parameters inferred with the neural network were within 6.58% difference from the parameters inferred with a high-resolution dictionary. Concordance correlation coefficients were above 0.92 and the normalized root mean squared error ranged between 4.2 and 12.7% with respect to gold-standard phantom references for T1 and T2. In vivo acquisitions demonstrate sub-millimetric isotropic resolution in under five minutes with reconstruction and inference times < 7 min. Our 3D quantitative transient-state imaging approach could enable high-resolution multiparametric tissue quantification within clinically acceptable acquisition and reconstruction times.
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Affiliation(s)
- Pedro A Gómez
- Computer Science, Munich School of Bioengineering, Technical University of Munich, Munich, Germany.
| | - Matteo Cencini
- Imago7 Foundation, Pisa, Italy
- IRCCS Stella Maris, Pisa, Italy
| | | | | | - Carolin Pirkl
- Computer Science, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- GE Healthcare, Munich, Germany
| | - Izabela Horvath
- Computer Science, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
- GE Healthcare, Munich, Germany
| | - Giada Fallo
- University of Pisa, Pisa, Italy
- Imago7 Foundation, Pisa, Italy
| | - Luca Peretti
- University of Pisa, Pisa, Italy
- Imago7 Foundation, Pisa, Italy
| | - Michela Tosetti
- Imago7 Foundation, Pisa, Italy
- IRCCS Stella Maris, Pisa, Italy
| | - Bjoern H Menze
- Computer Science, Munich School of Bioengineering, Technical University of Munich, Munich, Germany
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16
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Zeng DY, Baron CA, Malavé MO, Kerr AB, Yang PC, Hu BS, Nishimura DG. Combined T 2 -preparation and multidimensional outer volume suppression for coronary artery imaging with 3D cones trajectories. Magn Reson Med 2020; 83:2221-2231. [PMID: 31691350 PMCID: PMC7047567 DOI: 10.1002/mrm.28057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Revised: 10/08/2019] [Accepted: 10/09/2019] [Indexed: 11/07/2022]
Abstract
PURPOSE To develop a modular magnetization preparation sequence for combined T2 -preparation and multidimensional outer volume suppression (OVS) for coronary artery imaging. METHODS A combined T2 -prepared 1D OVS sequence with fat saturation was defined to contain a 90°-60 180°60 composite nonselective tip-down pulse, two 180°Y hard pulses for refocusing, and a -90° spectral-spatial sinc tip-up pulse. For 2D OVS, 2 modules were concatenated, selective in X and then Y. Bloch simulations predicted robustness of the sequence to B0 and B1 inhomogeneities. The proposed sequence was compared with a T2 -prepared 2D OVS sequence proposed by Luo et al, which uses a spatially selective 2D spiral tip-up. The 2 sequences were compared in phantom studies and in vivo coronary artery imaging studies with a 3D cones trajectory. RESULTS Phantom results demonstrated superior OVS for the proposed sequence compared with the Luo sequence. In studies on 15 healthy volunteers, the proposed sequence had superior image edge profile acutance values compared with the Luo sequence for the right (P < .05) and left (P < .05) coronary arteries, suggesting superior vessel sharpness. The proposed sequence also had superior signal-to-noise ratio (P < .05) and passband-to-stopband ratio (P < .05). Reader scores and reader preference indicated superior coronary image quality of the proposed sequence for both the right (P < .05) and left (P < .05) coronary arteries. CONCLUSION The proposed sequence with concatenated 1D spatially selective tip-ups and integrated fat saturation has superior image quality and suppression compared with the Luo sequence with 2D spatially selective tip-up.
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Affiliation(s)
- David Y Zeng
- Department of Electrical Engineering, Stanford University, Stanford, California
| | - Corey A Baron
- Department of Electrical Engineering, Stanford University, Stanford, California
- Department of Medical Biophysics, Western University, London, Canada
| | - Mario O Malavé
- Department of Electrical Engineering, Stanford University, Stanford, California
| | - Adam B Kerr
- Department of Electrical Engineering, Stanford University, Stanford, California
| | - Phillip C Yang
- Division of Cardiovascular Medicine, Department of Medicine, Stanford University, Stanford, California
| | - Bob S Hu
- Department of Electrical Engineering, Stanford University, Stanford, California
- Department of Cardiology, Palo Alto Medical Foundation, Palo Alto, California
| | - Dwight G Nishimura
- Department of Electrical Engineering, Stanford University, Stanford, California
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17
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Gottschalk M. Look-Locker FAIR TrueFISP for arterial spin labelling on mouse at 9.4 T. NMR IN BIOMEDICINE 2020; 33:e4191. [PMID: 31829485 DOI: 10.1002/nbm.4191] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 08/21/2019] [Accepted: 08/29/2019] [Indexed: 06/10/2023]
Abstract
Pulsed arterial spin labelling remains a non-invasive and highly used method for the study of rodent cerebral blood flow (CBF). Flow-sensitive alternating inversion recovery (FAIR) is one of the most commonly used MR-sequences for this purpose and exists with many different strategies to record the images. This study investigates Look-Locker (LL) TrueFISP readout for FAIR as an alternative to the standard EPI readout, which is provided by the manufacturer. The aim was to show the improved image quality using TrueFISP and to verify the reproducibility of the determination of the cerebral blood flow values. The measurement of many inversion points also allowed to investigate the influence of the correct blood relaxation rate on the fit of the CBF data. For the LL-FAIR TrueFISP an in-house written method was created. The method was tested on a group of C57BL/6 mice at the field strength of 9.4 T. The results show CBF maps with less distortion than for EPI and the values found are in good agreement with the literature. A comparison of the CBF values found with EPI and LL-TrueFISP shows very small differences, most being not significant. In conclusion, the method presented gives equivalent CBF maps in comparison to standard FAIR-EPI. Both methods have the same measurement time. TrueFISP has the advantage to EPI of producing undistorted images over larger areas of the mouse brain. It is advisable to check the value of the blood relaxation rate by measurement or to estimate it as a fitting parameter.
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Temporal registration: a new approach to manage the incomplete recovery of the longitudinal magnetization in the Modified Look-Locker Inversion Recovery sequence (MOLLI) for T1 mapping of the heart. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2020; 33:569-580. [PMID: 31915957 DOI: 10.1007/s10334-019-00815-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 11/17/2019] [Accepted: 12/04/2019] [Indexed: 01/08/2023]
Abstract
PURPOSE To correct with post-processing effects of incomplete recovery of the longitudinal magnetization before a new inversion pulse in the Modified Look-Locker Inversion recovery sequence (MOLLI) sequence. THEORY AND METHODS We model such effects as a temporal shift ([Formula: see text]) of the signal of the Look-Locker block following next inversion pulses. After using the following equation [Formula: see text], a temporal registration of [Formula: see text] is applied to the signal of the affected block to adjust the sampling time of the recovery signal and correct the underlying effect on quantitative T1. To test our approach, simulations, phantoms, and five volunteers' data were used while applying different MOLLI sampling schemes at different heart rates and compared to the reference three-parameter fit. RESULTS The temporal registration of the affected signals allows to reach higher accuracy on long T1 when compared to the reference three parameters fit (10.15 vs 22.12% for T1 = 1785 ms; 8.22 vs 14.65% for T1 = 1278 ms), and lower average variation in case of rest-period deletion (62 vs 231 ms). CONCLUSION The proposed approach leads to more accurate T1 in case of incomplete recovery. It is less sensitive to parameters affecting the recovery such as the rest period or the sampling scheme; and, therefore, supports multi-center studies with different MOLLI protocols.
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19
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Datta A, Nishimura DG, Baron CA. Banding‐free balanced SSFP cardiac cine using frequency modulation and phase cycle redundancy. Magn Reson Med 2019; 82:1604-1616. [DOI: 10.1002/mrm.27815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 04/09/2019] [Accepted: 04/24/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Anjali Datta
- Electrical Engineering Stanford University Stanford California
| | | | - Corey A. Baron
- Electrical Engineering Stanford University Stanford California
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20
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Robb JS, Hu C, Peters DC. Interleaved, undersampled radial multiple-acquisition steady-state free precession for improved left atrial cine imaging. Magn Reson Med 2019; 83:1721-1729. [PMID: 31605555 DOI: 10.1002/mrm.28036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 08/31/2019] [Accepted: 09/20/2019] [Indexed: 11/10/2022]
Abstract
PURPOSE Balanced steady-state free precession (bSSFP) left atrial (LA) cine suffers from off-resonance artifacts, particularly in the pulmonary veins (PVs). Linear combination or multiple-acquisition SSFP (MA-SSFP) effectively removes banding but greatly increases scan time. We hypothesized that MA-SSFP with interleaved radial undersampling, where each phase-cycling is acquired with an interleaved set of radial projections, would improve image quality of LA cine with a small increase of scan time and streak artefacts. METHODS Undersampled radial MA-SSFP with and without interleaving was compared with fully sampled radial bSSFP by means of simulations, phantoms, and in vivo imaging. Ten healthy subjects were imaged on a 3T scanner, with bSSFP and MA-SSFP cine of the left atrium, and B0-mapping. Images were assessed (1 = worst, 5 = best) by 2 independent readers, with respect to 5 qualitative criteria and apparent signal-to-noise ratio. RESULTS In healthy subjects, off-resonance differed from the right inferior PVs to the LA cavity by 163 Hz ± 73 Hz at 3T. Compared with fully sampled radial bSSFP, interleaved radial MA-SSFP significantly improved image quality with respect to off-resonance artifacts (3.8 ± 0.6 versus 2.3 ± 1.0; P = 0.005), PV conspicuity (2.8 ± 1.0 versus 4.3 ± 0.5; P = 0.005), and the number of visualized PVs (1.7 ± 0.4 versus 0.9 ± 0.7; P = 0.008), although with greater streak artifacts (3.4 ± 0.4 versus 4.9 ± 0.2; P = 0.004) and lower measured apparent signal-to-noise ratio (24 ± 9 versus 69 ± 36; P = 0.002). Flow artifacts were similar. Interleaved radial MA-SSFP reduced streaking artifacts and increased apparent signal-to-noise ratio versus noninterleaved radial. CONCLUSIONS Interleaved radial MA-SSFP cine reduces banding artifacts with an acceptable increase of scan time and streak artifacts. The proposed technique improves the LA and PV visualization in bSSFP cine imaging.
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Affiliation(s)
| | - Chenxi Hu
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China.,Department of Radiology and Biomedical Imaging, Yale School of Medicine, Yale University, New Haven, Connecticut
| | - Dana C Peters
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, Yale University, New Haven, Connecticut
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21
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Assländer J, Novikov DS, Lattanzi R, Sodickson DK, Cloos MA. Hybrid-state free precession in nuclear magnetic resonance. COMMUNICATIONS PHYSICS 2019; 2:73. [PMID: 31328174 PMCID: PMC6641569 DOI: 10.1038/s42005-019-0174-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 05/30/2019] [Indexed: 05/27/2023]
Abstract
The dynamics of large spin-1/2 ensembles are commonly described by the Bloch equation, which is characterized by the magnetization's non-linear response to the driving magnetic field. Consequently, most magnetic field variations result in non-intuitive spin dynamics, which are sensitive to small calibration errors. Although simplistic field variations result in robust spin dynamics, they do not explore the richness of the system's phase space. Here, we identify adiabaticity conditions that span a large experiment design space with tractable dynamics. All dynamics are trapped in a one-dimensional subspace, namely in the magnetization's absolute value, which is in a transient state, while its direction adiabatically follows the steady state. In this hybrid state, the polar angle is the effective drive of the spin dynamics. As an example, we optimize this drive for robust and efficient quantification of spin relaxation times and utilize it for magnetic resonance imaging of the human brain.
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Affiliation(s)
- Jakob Assländer
- Department of Radiology, Center for Biomedical Imaging, New York University School of Medicine, New York, NY, USA
- Center for Advanced Imaging Innovation and Research, New York University School of Medicine, New York, NY, USA
| | - Dmitry S Novikov
- Department of Radiology, Center for Biomedical Imaging, New York University School of Medicine, New York, NY, USA
- Center for Advanced Imaging Innovation and Research, New York University School of Medicine, New York, NY, USA
| | - Riccardo Lattanzi
- Department of Radiology, Center for Biomedical Imaging, New York University School of Medicine, New York, NY, USA
- Center for Advanced Imaging Innovation and Research, New York University School of Medicine, New York, NY, USA
- The Sackler Institute of Graduate Biomedical Sciences, New York University School of Medicine, New York, NY, USA
| | - Daniel K Sodickson
- Department of Radiology, Center for Biomedical Imaging, New York University School of Medicine, New York, NY, USA
- Center for Advanced Imaging Innovation and Research, New York University School of Medicine, New York, NY, USA
- The Sackler Institute of Graduate Biomedical Sciences, New York University School of Medicine, New York, NY, USA
| | - Martijn A Cloos
- Department of Radiology, Center for Biomedical Imaging, New York University School of Medicine, New York, NY, USA
- Center for Advanced Imaging Innovation and Research, New York University School of Medicine, New York, NY, USA
- The Sackler Institute of Graduate Biomedical Sciences, New York University School of Medicine, New York, NY, USA
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22
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Jackson LH, Price AN, Hutter J, Ho A, Roberts TA, Slator PJ, Clough JR, Deprez M, McCabe L, Malik SJ, Chappell L, Rutherford MA, Hajnal JV. Respiration resolved imaging with continuous stable state 2D acquisition using linear frequency SWEEP. Magn Reson Med 2019; 82:1631-1645. [PMID: 31183892 PMCID: PMC6682494 DOI: 10.1002/mrm.27834] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 04/04/2019] [Accepted: 05/09/2019] [Indexed: 01/31/2023]
Abstract
Purpose To investigate the potential of continuous radiofrequency (RF) shifting (SWEEP) as a technique for creating densely sampled data while maintaining a stable signal state for dynamic imaging. Methods We present a method where a continuous stable state of magnetization is swept smoothly across the anatomy of interest, creating an efficient approach to dense multiple 2D slice imaging. This is achieved by introducing a linear frequency offset to successive RF pulses shifting the excited slice by a fraction of the slice thickness with each successive repeat times (TR). Simulations and in vivo imaging were performed to assess how this affects the measured signal. Free breathing, respiration resolved 4D volumes in fetal/placental imaging is explored as potential application of this method. Results The SWEEP method maintained a stable signal state over a full acquisition reducing artifacts from unstable magnetization. Simulations demonstrated that the effects of SWEEP on slice profiles was of the same order as that produced by physiological motion observed with conventional methods. Respiration resolved 4D data acquired with this method shows reduced respiration artifacts and resilience to non‐rigid and non‐cyclic motion. Conclusions The SWEEP method is presented as a technique for improved acquisition efficiency of densely sampled short‐TR 2D sequences. Using conventional slice excitation the number of RF pulses required to enter a true steady state is excessively high when using short‐TR 2D acquisitions, SWEEP circumvents this limitation by creating a stable signal state that is preserved between slices.
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Affiliation(s)
- L H Jackson
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - A N Price
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - J Hutter
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - A Ho
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom.,Department of Women and Children's Health, School of Life Course Sciences, King's College London, London, United Kingdom
| | - T A Roberts
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - P J Slator
- Centre for Medical Image Computing, University College London, London, United Kingdom
| | - J R Clough
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - M Deprez
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - L McCabe
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - S J Malik
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - L Chappell
- Department of Women and Children's Health, School of Life Course Sciences, King's College London, London, United Kingdom
| | - M A Rutherford
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
| | - J V Hajnal
- Biomedical Engineering, School of Imaging Sciences and Biomedical Engineering, Kings College London, London, United Kingdom
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23
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Maunder A, Rao M, Robb F, Wild JM. Optimization of steady-state free precession MRI for lung ventilation imaging with 19 F C 3 F 8 at 1.5T and 3T. Magn Reson Med 2019; 81:1130-1142. [PMID: 30387911 PMCID: PMC6491987 DOI: 10.1002/mrm.27479] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 06/26/2018] [Accepted: 07/11/2018] [Indexed: 12/12/2022]
Abstract
PURPOSE To optimize 19 F imaging pulse sequences for perfluoropropane (C3 F8 ) gas human lung ventilation MRI considering intrinsic in vivo relaxation parameters at both 1.5T and 3T. METHODS Optimization of the imaging parameters for both 3D spoiled gradient (SPGR) and steady-state free precession (SSFP) 19 F imaging sequences with inhaled 79% C3 F8% and 21% oxygen was performed. Phantom measurements were used to validate simulations of SNR. In vivo parameter mapping and sequence optimization and comparison was performed by imaging the lungs of a healthy adult volunteer. T1 and T2* mapping was performed in vivo to optimize sequence parameters for in vivo lung MRI. The performance of SSFP and SPGR was then evaluated in vivo at 1.5T and 3T. RESULTS The in vivo T2* of C3 F8 was shown to be dependent upon lung inflation level (2.04 ms ± 36% for residual volume and 3.14 ms ± 28% for total lung capacity measured at 3T), with lower T2* observed near the susceptibility interfaces of the diaphragm and around pulmonary blood vessels. Simulation and phantom measurements indicate that a factor of ~2-3 higher SNR can be achieved with SSFP when compared with optimized SPGR. In vivo lung imaging showed a 1.7 factor of improvement in SNR achieved at 1.5T, while the theoretical improvement at 3T was not attained due to experimental SAR constraints, shorter in vivo T1 , and B0 inhomogeneity. CONCLUSION SSFP imaging provides increased SNR in lung ventilation imaging of C3 F8 demonstrated at 1.5T with optimized SSFP similar to the SNR that can be obtained at 3T with optimized SPGR.
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Affiliation(s)
- Adam Maunder
- POLARIS, Unit of Academic Radiology, Department of IICDUniversity of SheffieldSheffieldUnited Kingdom
| | - Madhwesha Rao
- POLARIS, Unit of Academic Radiology, Department of IICDUniversity of SheffieldSheffieldUnited Kingdom
| | - Fraser Robb
- POLARIS, Unit of Academic Radiology, Department of IICDUniversity of SheffieldSheffieldUnited Kingdom
- GE HealthcareAuroraOhio
| | - Jim M. Wild
- POLARIS, Unit of Academic Radiology, Department of IICDUniversity of SheffieldSheffieldUnited Kingdom
- Insigneo Institute for In silico medicineSheffieldUnited Kingdom
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24
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Bipin Mehta B, Coppo S, Frances McGivney D, Ian Hamilton J, Chen Y, Jiang Y, Ma D, Seiberlich N, Gulani V, Alan Griswold M. Magnetic resonance fingerprinting: a technical review. Magn Reson Med 2018; 81:25-46. [PMID: 30277265 DOI: 10.1002/mrm.27403] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Revised: 05/01/2018] [Accepted: 05/21/2018] [Indexed: 01/31/2023]
Abstract
Multiparametric quantitative imaging is gaining increasing interest due to its widespread advantages in clinical applications. Magnetic resonance fingerprinting is a recently introduced approach of fast multiparametric quantitative imaging. In this article, magnetic resonance fingerprinting acquisition, dictionary generation, reconstruction, and validation are reviewed.
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Affiliation(s)
- Bhairav Bipin Mehta
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Simone Coppo
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Debra Frances McGivney
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Jesse Ian Hamilton
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
| | - Yong Chen
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Yun Jiang
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Dan Ma
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio
| | - Nicole Seiberlich
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
| | - Vikas Gulani
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio.,Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
| | - Mark Alan Griswold
- Department of Radiology, Case Western Reserve Universityand University Hospitals Cleveland Medical Center, Cleveland, Ohio.,Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
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25
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Approximate large-scale Bayesian spatial modeling with application to quantitative magnetic resonance imaging. ASTA-ADVANCES IN STATISTICAL ANALYSIS 2018. [DOI: 10.1007/s10182-018-00334-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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26
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Pednekar AS, Wang H, Flamm S, Cheong BY, Muthupillai R. Two-center clinical validation and quantitative assessment of respiratory triggered retrospectively cardiac gated balanced-SSFP cine cardiovascular magnetic resonance imaging in adults. J Cardiovasc Magn Reson 2018; 20:44. [PMID: 29950177 PMCID: PMC6022503 DOI: 10.1186/s12968-018-0467-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Accepted: 05/25/2018] [Indexed: 01/19/2023] Open
Abstract
BACKGROUND Breath-hold (BH) requirement remains the limiting factor on the spatio-temporal resolution and coverage of the cine balanced steady-state free precession (bSSFP) cardiovascular magnetic resonance (CMR) imaging. In this prospective two-center clinical trial, we validated the performance of a respiratory triggered (RT) bSSFP cine sequence for evaluation of biventricular function. METHODS Our study included 23 asymptomatic healthy subjects and 60 consecutive patients from Institute A (n = 39) and Institute B (n = 21) referred for a clinically indicated CMR study. We implemented a RT sequence with a respiratory synchronized drive to steady state (SS) of bSSFP signal, before the commencement of image data acquisition with prospective cardiac arrhythmia rejection and retrospectively cardiac gated reconstruction in real-time. Left (LV) and right (RV) ventricular function and LV mass were evaluated by using RT-bSSFP and conventional BH-bSSFP sequences with one cardiac cycle for SS preparation keeping all the imaging parameters identical. The performance of the sequences was evaluated by using quantitative and semi-quantitative metrics. RESULTS Global LV and RV functional parameters and LV mass obtained from the RT-bSSFP and BH-bSSFP sequences were in good agreement. Quantitative metrics designed to capture fluctuation in SS signal intensity showed no significant difference between sequences. In addition, blood-to-myocardial contrast was nearly identical between sequences. The combined clinical score for image quality was excellent or good for 100% of cases with the BH-bSSFP and 83% of cases with the RT-bSSFP sequence. The de facto image acquisition time for RT-bSSFP was statistically significantly longer than that for conventional BH-bSSFP (7.9 ± 3.4 min vs. 5.1 ± 2.6 min). CONCLUSIONS Cine RT-bSSFP is an alternative for evaluating global biventricular function with contrast and spatio-temporal resolutions that are similar to those attained by using the BH-bSSFP sequence, albeit with a modest time penalty and a small reduction in image quality.
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Affiliation(s)
- Amol S Pednekar
- Department of Radiology, Texas Children’s Hospital, 6701 Fannin Street, Suite D470.09, Houston, TX 77030-2399 USA
| | - Hui Wang
- Philips Healthcare, Gainesville, FL USA
| | - Scott Flamm
- Department of Diagnostic Radiology, Cleveland Clinic, Cleveland, OH USA
| | - Benjamin Y. Cheong
- Department of Radiology, Baylor St. Luke’s Medical Center, Houston, TX USA
| | - Raja Muthupillai
- Department of Radiology, Baylor St. Luke’s Medical Center, Houston, TX USA
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27
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Monitoring skeletal muscle chronic fatty degenerations with fast T1-mapping. Eur Radiol 2018; 28:4662-4668. [PMID: 29713767 DOI: 10.1007/s00330-018-5433-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 03/05/2018] [Accepted: 03/16/2018] [Indexed: 10/17/2022]
Abstract
OBJECTIVES To develop a fast, high-resolution T1-mapping sequence dedicated to skeletal muscle imaging, and to evaluate the potential of T1 as a robust and sensitive biomarker for the monitoring of chronic fatty degenerations in a dystrophic disease. METHODS The magnetic resonance imaging sequence consisted of the acquisition of a 1,000-radial-spokes FLASH echo-train following magnetisation inversion, resulting in 10s scan time per slice. Temporal image series were reconstructed using compressed sensing and T1 maps were computed using Bloch simulations. Ten healthy volunteers and 30 patients suffering from Becker muscular dystrophy (BMD) participated in this prospective study, in order to evaluate the repeatability, the precision and the sensitivity of the proposed approach. Intramuscular fat fraction (FF) was also measured using a standard three-point Dixon method. The protocol was approved by a local ethics committee. RESULTS The mean T1 evaluated in the thighs muscles of healthy volunteers was 1,199 ± 45 ms, with a coefficient of reproducibility of 2.3%. Mean T1 values were statistically decreased in the thighs of BMD patients and were linearly correlated with intramuscular FF (R = -0.98). CONCLUSIONS T1-mapping is a good candidate for fast, sensitive and quantitative monitoring of fatty infiltrations in neuromuscular disorders. KEY POINTS • A T1 mapping sequence dedicated to skeletal muscle imaging was implemented. • The acquisition time was 10 s per slice. • Muscle T1 values were significantly decreased in dystrophic muscles compared to healthy muscles. • T1 values correlated with intramuscular fat fraction measured by three-point Dixon. • T1 represents an alternative biomarker for monitoring fatty infiltrations in neuromuscular disorders.
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28
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Kampf T, Reiter T, Bauer WR. An analytical model which determines the apparent T 1 for Modified Look-Locker Inversion Recovery – Analysis of the longitudinal relaxation under the influence of discontinuous balanced (classical MOLLI) and spoiled gradient echo readouts. Z Med Phys 2018; 28:150-157. [DOI: 10.1016/j.zemedi.2017.07.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 07/05/2017] [Accepted: 07/09/2017] [Indexed: 10/19/2022]
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29
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Biyik E, Ilicak E, Çukur T. Reconstruction by calibration over tensors for multi‐coil multi‐acquisition balanced SSFP imaging. Magn Reson Med 2017; 79:2542-2554. [DOI: 10.1002/mrm.26902] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Revised: 07/31/2017] [Accepted: 08/15/2017] [Indexed: 01/27/2023]
Affiliation(s)
- Erdem Biyik
- Department of Electrical and Electronics EngineeringBilkent UniversityAnkara Turkey
- National Magnetic Resonance Research Center (UMRAM), Bilkent UniversityAnkara Turkey
| | - Efe Ilicak
- Department of Electrical and Electronics EngineeringBilkent UniversityAnkara Turkey
- National Magnetic Resonance Research Center (UMRAM), Bilkent UniversityAnkara Turkey
| | - Tolga Çukur
- Department of Electrical and Electronics EngineeringBilkent UniversityAnkara Turkey
- National Magnetic Resonance Research Center (UMRAM), Bilkent UniversityAnkara Turkey
- Neuroscience ProgramSabuncu Brain Research Center, Bilkent UniversityAnkara Turkey
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30
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Haldar JP, Setsompop K, Wald LL. Optimal experiment design for magnetic resonance fingerprinting. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2016:453-456. [PMID: 28268369 DOI: 10.1109/embc.2016.7590737] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Magnetic resonance (MR) fingerprinting is an emerging quantitative MR imaging technique that simultaneously acquires multiple tissue parameters in an efficient experiment. In this work, we present an estimation-theoretic framework to evaluate and design MR fingerprinting experiments. More specifically, we derive the Cramér-Rao bound (CRB), a lower bound on the covariance of any unbiased estimator, to characterize parameter estimation for MR fingerprinting. We then formulate an optimal experiment design problem based on the CRB to choose a set of acquisition parameters (e.g., flip angles and/or repetition times) that maximizes the signal-to-noise ratio efficiency of the resulting experiment. The utility of the proposed approach is validated by numerical studies. Representative results demonstrate that the optimized experiments allow for substantial reduction in the length of an MR fingerprinting acquisition, and substantial improvement in parameter estimation performance.
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31
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Marty B, Coppa B, Carlier PG. Fast, precise, and accurate myocardial T 1 mapping using a radial MOLLI sequence with FLASH readout. Magn Reson Med 2017; 79:1387-1398. [PMID: 28671304 DOI: 10.1002/mrm.26795] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 05/24/2017] [Accepted: 05/25/2017] [Indexed: 12/21/2022]
Abstract
PURPOSE Quantitative cardiac MRI, and more particularly T1 mapping, has become a most important modality to characterize myocardial tissue. In this work, the value of a radial variant of the conventional modified Look-Locker inversion recovery sequence (raMOLLI) is demonstrated. METHODS The raMOLLI acquisition scheme consisted of five radial echo trains of 80 spokes acquired using either a fast low-angle shot (FLASH) or a true fast imaging with steady-state-precession (TrueFISP) readout at different time points after a single magnetization inversion. View sharing combined with a compressed sensing algorithm allowed the reconstruction of 50 images along the T1 relaxation recovery curve, to which a dictionary-fitting approach was applied to estimate T1 . The sequence was validated on a nine-vial phantom, on 19 healthy subjects, and one patient suffering from dilated cardiomyopathy. RESULTS The raMOLLI sequence allowed a significant decrease of myocardial T1 map acquisition time down to five heartbeats, while exhibiting a higher degree of accuracy and a comparable precision on T1 value estimation than the conventional modified Look-Locker inversion recovery sequence. The FLASH readout demonstrated a better robustness to B0 inhomogeneities than TrueFISP, and was therefore preferred for in vivo acquisitions. CONCLUSIONS This sequence represents a good candidate for ultrafast acquisition of myocardial T1 maps. Magn Reson Med 79:1387-1398, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- B Marty
- Institute of Myology, NMR Laboratory, Paris, France.,CEA, DRF, IBFJ, MIRCen, NMR Laboratory, Paris, France
| | - B Coppa
- Institute of Myology, NMR Laboratory, Paris, France.,CEA, DRF, IBFJ, MIRCen, NMR Laboratory, Paris, France
| | - P G Carlier
- Institute of Myology, NMR Laboratory, Paris, France.,CEA, DRF, IBFJ, MIRCen, NMR Laboratory, Paris, France
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32
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Zhang S, Liu Z, Grant A, Keupp J, Lenkinski RE, Vinogradov E. Balanced Steady-State Free Precession (bSSFP) from an effective field perspective: Application to the detection of chemical exchange (bSSFPX). JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2017; 275:55-67. [PMID: 28012297 PMCID: PMC5810596 DOI: 10.1016/j.jmr.2016.12.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 12/02/2016] [Accepted: 12/03/2016] [Indexed: 05/08/2023]
Abstract
Chemical exchange saturation transfer (CEST) is a novel contrast mechanism and it is gaining increasing popularity as many promising applications have been proposed and investigated. Fast and quantitative CEST imaging techniques are further needed in order to increase the applicability of CEST for clinical use as well as to derive quantitative physiological and biological information. Steady-state methods for fast CEST imaging have been reported recently. Here, we observe that an extreme case of these methods is a balanced steady-state free precession (bSSFP) sequence. The bSSFP in itself is sensitive to the exchange processes; hence, no additional saturation or preparation is needed for CEST-like data acquisition. The bSSFP experiment can be regarded as observation during saturation, without separate saturation and acquisition modules as used in standard CEST and similar experiments. One of the differences from standard CEST methods is that the bSSFP spectrum is an XY-spectrum not a Z-spectrum. As the first proof-of-principle step, we have implemented the steady-state bSSFP sequence for chemical exchange detection (bSSFPX) and verified its feasibility in phantom studies. These studies have shown that bSSFPX can achieve exchange-mediated contrast comparable to the standard CEST experiment. Therefore, the bSSFPX method has a potential for fast and quantitative CEST data acquisition.
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Affiliation(s)
- Shu Zhang
- Department of Radiology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Zheng Liu
- Department of Radiology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Aaron Grant
- Division of MR Research, Department of Radiology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA
| | | | - Robert E Lenkinski
- Department of Radiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Advanced Imaging Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Elena Vinogradov
- Department of Radiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Advanced Imaging Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.
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33
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Shang H, Sukumar S, von Morze C, Bok RA, Marco-Rius I, Kerr A, Reed GD, Milshteyn E, Ohliger MA, Kurhanewicz J, Larson PEZ, Pauly JM, Vigneron DB. Spectrally selective three-dimensional dynamic balanced steady-state free precession for hyperpolarized C-13 metabolic imaging with spectrally selective radiofrequency pulses. Magn Reson Med 2016; 78:963-975. [PMID: 27770458 DOI: 10.1002/mrm.26480] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 08/30/2016] [Accepted: 09/02/2016] [Indexed: 12/12/2022]
Abstract
PURPOSE Balanced steady-state free precession (bSSFP) sequences can provide superior signal-to-noise ratio efficiency for hyperpolarized (HP) carbon-13 (13 C) magnetic resonance imaging by efficiently utilizing the nonrecoverable magnetization, but managing their spectral response is challenging in the context of metabolic imaging. A new spectrally selective bSSFP sequence was developed for fast imaging of multiple HP 13 C metabolites with high spatiotemporal resolution. THEORY AND METHODS This novel approach for bSSFP spectral selectivity incorporates optimized short-duration spectrally selective radiofrequency pulses within a bSSFP pulse train and a carefully chosen repetition time to avoid banding artifacts. RESULTS The sequence enabled subsecond 3D dynamic spectrally selective imaging of 13 C metabolites of copolarized [1-13 C]pyruvate and [13 C]urea at 2-mm isotropic resolution, with excellent spectral selectivity (∼100:1). The sequence was successfully tested in phantom studies and in vivo studies with normal mice. CONCLUSION This sequence is expected to benefit applications requiring dynamic volumetric imaging of metabolically active 13 C compounds at high spatiotemporal resolution, including preclinical studies at high field and, potentially, clinical studies. Magn Reson Med 78:963-975, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Hong Shang
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.,UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco and University of California, Berkeley, California, USA
| | - Subramaniam Sukumar
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Cornelius von Morze
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Robert A Bok
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Irene Marco-Rius
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - Adam Kerr
- Electrical Engineering, Stanford University, Stanford, California, USA
| | | | - Eugene Milshteyn
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.,UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco and University of California, Berkeley, California, USA
| | - Michael A Ohliger
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA
| | - John Kurhanewicz
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.,UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco and University of California, Berkeley, California, USA
| | - Peder E Z Larson
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.,UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco and University of California, Berkeley, California, USA
| | - John M Pauly
- Electrical Engineering, Stanford University, Stanford, California, USA
| | - Daniel B Vigneron
- Department of Radiology and Biomedical Imaging, University of California, San Francisco, California, USA.,UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco and University of California, Berkeley, California, USA
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Lee HS, Choi SH, Park SH. Single and double acquisition strategies for compensation of artifacts from eddy current and transient oscillation in balanced steady-state free precession. Magn Reson Med 2016; 78:254-263. [DOI: 10.1002/mrm.26338] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Revised: 05/18/2016] [Accepted: 06/18/2016] [Indexed: 11/07/2022]
Affiliation(s)
- Hyun-Soo Lee
- MRI Laboratory, Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology; Daejeon Korea
| | - Seung Hong Choi
- Department of Radiology; Seoul National University College of Medicine; Seoul Korea
| | - Sung-Hong Park
- MRI Laboratory, Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology; Daejeon Korea
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Kim KH, Choi SH, Park SH. Feasibility of Quantifying Arterial Cerebral Blood Volume Using Multiphase Alternate Ascending/Descending Directional Navigation (ALADDIN). PLoS One 2016; 11:e0156687. [PMID: 27257674 PMCID: PMC4892492 DOI: 10.1371/journal.pone.0156687] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 05/18/2016] [Indexed: 11/18/2022] Open
Abstract
Arterial cerebral blood volume (aCBV) is associated with many physiologic and pathologic conditions. Recently, multiphase balanced steady state free precession (bSSFP) readout was introduced to measure labeled blood signals in the arterial compartment, based on the fact that signal difference between labeled and unlabeled blood decreases with the number of RF pulses that is affected by blood velocity. In this study, we evaluated the feasibility of a new 2D inter-slice bSSFP-based arterial spin labeling (ASL) technique termed, alternate ascending/descending directional navigation (ALADDIN), to quantify aCBV using multiphase acquisition in six healthy subjects. A new kinetic model considering bSSFP RF perturbations was proposed to describe the multiphase data and thus to quantify aCBV. Since the inter-slice time delay (TD) and gap affected the distribution of labeled blood spins in the arterial and tissue compartments, we performed the experiments with two TDs (0 and 500 ms) and two gaps (300% and 450% of slice thickness) to evaluate their roles in quantifying aCBV. Comparison studies using our technique and an existing method termed arterial volume using arterial spin tagging (AVAST) were also separately performed in five subjects. At 300% gap or 500-ms TD, significant tissue perfusion signals were demonstrated, while tissue perfusion signals were minimized and arterial signals were maximized at 450% gap and 0-ms TD. ALADDIN has an advantage of visualizing bi-directional flow effects (ascending/descending) in a single experiment. Labeling efficiency (α) of inter-slice blood flow effects could be measured in the superior sagittal sinus (SSS) (20.8±3.7%.) and was used for aCBV quantification. As a result of fitting to the proposed model, aCBV values in gray matter (1.4-2.3 mL/100 mL) were in good agreement with those from literature. Our technique showed high correlation with AVAST, especially when arterial signals were accentuated (i.e., when TD = 0 ms) (r = 0.53). The bi-directional perfusion imaging with multiphase ALADDIN approach can be an alternative to existing techniques for quantification of aCBV.
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Affiliation(s)
- Ki Hwan Kim
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
| | - Seung Hong Choi
- Department of Radiology, Seoul National University College of Medicine, Seoul, South Korea
| | - Sung-Hong Park
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
- * E-mail:
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36
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Ilicak E, Cetin S, Bulut E, Oguz KK, Saritas EU, Unal G, Çukur T. Targeted vessel reconstruction in non-contrast-enhanced steady-state free precession angiography. NMR IN BIOMEDICINE 2016; 29:532-544. [PMID: 26854004 DOI: 10.1002/nbm.3497] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Revised: 01/07/2016] [Accepted: 01/08/2016] [Indexed: 06/05/2023]
Abstract
Image quality in non-contrast-enhanced (NCE) angiograms is often limited by scan time constraints. An effective solution is to undersample angiographic acquisitions and to recover vessel images with penalized reconstructions. However, conventional methods leverage penalty terms with uniform spatial weighting, which typically yield insufficient suppression of aliasing interference and suboptimal blood/background contrast. Here we propose a two-stage strategy where a tractographic segmentation is employed to auto-extract vasculature maps from undersampled data. These maps are then used to incur spatially adaptive sparsity penalties on vascular and background regions. In vivo steady-state free precession angiograms were acquired in the hand, lower leg and foot. Compared with regular non-adaptive compressed sensing (CS) reconstructions (CSlow ), the proposed strategy improves blood/background contrast by 71.3 ± 28.9% in the hand (mean ± s.d. across acceleration factors 1-8), 30.6 ± 11.3% in the lower leg and 28.1 ± 7.0% in the foot (signed-rank test, P < 0.05 at each acceleration). The proposed targeted reconstruction can relax trade-offs between image contrast, resolution and scan efficiency without compromising vessel depiction.
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Affiliation(s)
- Efe Ilicak
- Department of Electrical and Electronics Engineering and the National Magnetic Resonance Research Center, Bilkent University, Ankara, Turkey
| | - Suheyla Cetin
- Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul, Turkey
| | - Elif Bulut
- Hacettepe University Faculty of Medicine, Ankara, Turkey
| | | | - Emine Ulku Saritas
- Department of Electrical and Electronics Engineering and the National Magnetic Resonance Research Center, Bilkent University, Ankara, Turkey
| | - Gozde Unal
- Department of Computer Engineering, Istanbul Technical University, Istanbul, Turkey
| | - Tolga Çukur
- Department of Electrical and Electronics Engineering and the National Magnetic Resonance Research Center, Bilkent University, Ankara, Turkey
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Bouhrara M, Reiter DA, Celik H, Fishbein KW, Kijowski R, Spencer RG. Analysis of mcDESPOT- and CPMG-derived parameter estimates for two-component nonexchanging systems. Magn Reson Med 2015; 75:2406-20. [PMID: 26140371 DOI: 10.1002/mrm.25801] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Revised: 05/06/2015] [Accepted: 05/18/2015] [Indexed: 02/06/2023]
Abstract
PURPOSE To compare the reliability and stability of the multicomponent-driven equilibrium single pulse observation of T1 and T2 (mcDESPOT) and Carl-Purcell-Meiboom-Gill (CPMG) approaches to parameter estimation. METHODS The stability and reliability of mcDESPOT and CPMG-derived parameter estimates were compared through examination of energy surfaces, evaluation of model sloppiness, and Monte Carlo simulations. Comparisons were performed on an equal time basis and assuming a two-component system. Parameter estimation bias, reflecting accuracy, and dispersion, reflecting precision, were derived for a range of signal-to-noise ratios (SNRs) and relaxation parameters. RESULTS The energy surfaces for parameters incorporated into the mcDESPOT signal model exhibit flatness, a complex structure of local minima, and instability to noise to a much greater extent than the corresponding surfaces for CPMG. Although both mcDESPOT and CPMG performed well at high SNR, the CPMG approach yielded parameter estimates of considerably greater accuracy and precision at lower SNR. CONCLUSION mcDESPOT and CPMG both permit high-quality parameter estimates under SNR that are clinically achievable under many circumstances, depending upon available hardware and resolution and acquisition time constraints. At moderate to high SNR, the mcDESPOT approach incorporating two-step phase increments can yield accurate parameter estimates while providing values for longitudinal relaxation times that are not available through CPMG. However, at low SNR, the CPMG approach is more stable and provides superior parameter estimates. Magn Reson Med 75:2406-2420, 2016. © 2015 Wiley Periodicals, Inc.
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Affiliation(s)
- Mustapha Bouhrara
- Laboratory of Clinical Investigation, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA
| | - David A Reiter
- Laboratory of Clinical Investigation, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA
| | - Hasan Celik
- Laboratory of Clinical Investigation, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA
| | - Kenneth W Fishbein
- Laboratory of Clinical Investigation, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA
| | - Richard Kijowski
- Department of Radiology, University of Wisconsin, Madison, Wisconsin, USA
| | - Richard G Spencer
- Laboratory of Clinical Investigation, National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA
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Sussman MS, Yang IY, Fok KH, Wintersperger BJ. Inversion group (IG) fitting: A new T1
mapping method for modified look-locker inversion recovery (MOLLI) that allows arbitrary inversion groupings and rest periods (including no rest period). Magn Reson Med 2015; 75:2332-40. [DOI: 10.1002/mrm.25829] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Revised: 05/14/2015] [Accepted: 06/09/2015] [Indexed: 11/10/2022]
Affiliation(s)
- Marshall S. Sussman
- Joint Department of Medical Imaging; University Health Network, University of Toronto; Toronto, Ontario Canada
- Department of Medical Imaging; University of Toronto; Toronto, Ontario
| | - Issac Y. Yang
- Joint Department of Medical Imaging; University Health Network, University of Toronto; Toronto, Ontario Canada
| | - Kai-Ho Fok
- Joint Department of Medical Imaging; University Health Network, University of Toronto; Toronto, Ontario Canada
| | - Bernd J. Wintersperger
- Joint Department of Medical Imaging; University Health Network, University of Toronto; Toronto, Ontario Canada
- Department of Medical Imaging; University of Toronto; Toronto, Ontario
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Jou T, Patterson S, Pauly JM, Bowen CV. Fat-suppressed alternating-SSFP for whole-brain fMRI using breath-hold and visual stimulus paradigms. Magn Reson Med 2015; 75:1978-88. [PMID: 26037220 DOI: 10.1002/mrm.25797] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Revised: 04/24/2015] [Accepted: 05/01/2015] [Indexed: 11/07/2022]
Abstract
PURPOSE To achieve artifact-suppressed whole-brain pass-band-balanced steady-state free precession functional MRI from a single functional magnetic resonance imaging (fMRI) scan. METHODS A complete and practical data acquisition sequence for alt-SSFP fMRI was developed. First, multishot flyback-echo-planar imaging (EPI) and echo-time shifting were used to achieve data acquisition that was robust against eddy currents, gradient delays, and ghosting artifacts. Second, a steady-state catalyzation scheme was implemented to reduce oscillations in the transient signal when catalyzing in and out of alternate steady states. Next, a short spatial-spectral radiofrequency (RF) pulse was designed to achieve excellent fat-suppression while maintaining a repetition time <15 ms to sensitize functional activation toward smaller vessels and capillaries. Lastly, parallel imaging was used to achieve whole-brain coverage and sufficiently high temporal resolution. RESULTS Breath-hold experiments showed excellent fat-suppression and alt-SSFP's capability to recover functional sensitivity from signal dropout regions of conventional gradient-echo and banding artifacts from conventional pass-band-balanced steady-state free precession. Applying fat-suppression resulted in improved activation maps and increased temporal SNR. Visual stimulus functional studies verify the proposed method's excellent functional sensitivity to neuronal activation. CONCLUSION Artifact-suppressed images are demonstrated, showing a practical pass-band-balanced steady-state free precession fMRI method that permits whole-brain imaging with excellent blood oxygen level-dependent sensitivity and fat suppression.
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Affiliation(s)
- Tiffany Jou
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Steve Patterson
- Biomedical Translational Imaging Centre, Halifax, Nova Scotia, Canada
| | - John M Pauly
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Chris V Bowen
- Department of Radiology, Dalhousie University, Halifax, Nova Scotia, Canada
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Bauman G, Pusterla O, Bieri O. Ultra-fast Steady-State Free Precession Pulse Sequence for Fourier Decomposition Pulmonary MRI. Magn Reson Med 2015; 75:1647-53. [DOI: 10.1002/mrm.25697] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Revised: 02/23/2015] [Accepted: 02/24/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Grzegorz Bauman
- Division of Radiological Physics, Department of Radiology; University of Basel Hospital; Basel Switzerland
| | - Orso Pusterla
- Division of Radiological Physics, Department of Radiology; University of Basel Hospital; Basel Switzerland
| | - Oliver Bieri
- Division of Radiological Physics, Department of Radiology; University of Basel Hospital; Basel Switzerland
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BLOCH equations-based reconstruction of myocardium t1 maps from modified look-locker inversion recovery sequence. PLoS One 2015; 10:e0126766. [PMID: 25962182 PMCID: PMC4427396 DOI: 10.1371/journal.pone.0126766] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2014] [Accepted: 04/07/2015] [Indexed: 11/19/2022] Open
Abstract
Modified Look-Locker Inversion recovery (MOLLI) sequence is increasingly performed for myocardial T1 mapping but is known to underestimate T1 values. The aim of the study was to quantitatively analyze several sources of errors when T1 maps are derived using standard post-processing of the sequence and to propose a reconstruction approach that takes into account inversion efficacy (η), T2 relaxation during balanced steady-state free-precession readouts and B1+ inhomogeneities. Contributions of the different sources of error were analyzed using Bloch equations simulations of MOLLI sequence. Bloch simulations were then combined with the acquisition of fast B1+ and T2 maps to derive more accurate T1 maps. This novel approach was evaluated on phantoms and on five healthy volunteers. Simulations show that T2 variations, B1+ heterogeneities and inversion efficiency represent major confounders for T1 mapping when MOLLI is processed with standard 3-parameters fitting. In vitro data indicate that T1 values are accurately derived with the simulation approach and in vivo data suggest that myocardium T1 are 15% underestimated when processed with the standard 3-parameters fitting. At the cost of additional acquisitions, this method might be suitable in clinical research protocols for precise tissue characterization as it decorrelates T1 and T2 effects on parametric maps provided by MOLLI sequence and avoids inaccuracies when B1+ is not homogenous throughout the myocardium.
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Stewart NJ, Norquay G, Griffiths PD, Wild JM. Feasibility of human lung ventilation imaging using highly polarized naturally abundant xenon and optimized three-dimensional steady-state free precession. Magn Reson Med 2015; 74:346-52. [DOI: 10.1002/mrm.25732] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Revised: 02/22/2015] [Accepted: 03/20/2015] [Indexed: 12/11/2022]
Affiliation(s)
- Neil J. Stewart
- Academic Unit of Radiology; University of Sheffield, Royal Hallamshire Hospital; Sheffield United Kingdom
| | - Graham Norquay
- Academic Unit of Radiology; University of Sheffield, Royal Hallamshire Hospital; Sheffield United Kingdom
| | - Paul D. Griffiths
- Academic Unit of Radiology; University of Sheffield, Royal Hallamshire Hospital; Sheffield United Kingdom
| | - Jim M. Wild
- Academic Unit of Radiology; University of Sheffield, Royal Hallamshire Hospital; Sheffield United Kingdom
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Çukur T. Spectrally selective imaging with wideband balanced steady-state free precession MRI. Magn Reson Med 2015; 75:1132-41. [PMID: 25846631 DOI: 10.1002/mrm.25700] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2014] [Revised: 01/26/2015] [Accepted: 02/25/2015] [Indexed: 11/10/2022]
Abstract
PURPOSE Unwanted, bright fat signals in balanced steady-state free precession sequences are commonly suppressed using spectral shaping. Here, a new spectral-shaping method is proposed to significantly improve the uniformity of stopband suppression without compromising the level of passband signals. METHODS The proposed method combines binomial-pattern excitation pulses with a wideband balanced steady-state free precession sequence kernel. It thereby increases the frequency separation between the centers of pass and stopbands by π radians, enabling improved water-fat contrast. Simulations were performed to find the optimal flip angles and subpulse spacing for the binomial pulses that maximize contrast and signal efficiency. RESULTS Comparisons with a conventional binomial balanced steady-state free precession sequence were performed in simulations as well as phantom and in vivo experiments at 1.5 T and 3 T. Enhanced fat suppression is demonstrated in vivo with an average improvement of 58% in blood-fat and 68% in muscle-fat contrast (P < 0.001, Wilcoxon signed-rank test). CONCLUSION The proposed binomial wideband balanced steady-state free precession method is a promising candidate for spectrally selective imaging with enhanced reliability against field inhomogeneities.
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Affiliation(s)
- Tolga Çukur
- Department of Electrical and Electronics Engineering, Bilkent University, Ankara, Turkey.,National Magnetic Resonance Research Center, Bilkent University, Ankara, Turkey
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44
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Galassi F, Brujic D, Rea M, Lambert N, Desouza N, Ristic M. Fast and accurate localization of multiple RF markers for tracking in MRI-guided interventions. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2014; 28:33-48. [PMID: 24802620 PMCID: PMC4315881 DOI: 10.1007/s10334-014-0446-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Revised: 04/07/2014] [Accepted: 04/07/2014] [Indexed: 11/01/2022]
Abstract
OBJECT A new method for 3D localization of N fiducial markers from 1D projections is presented and analysed. It applies to semi-active markers and active markers using a single receiver channel. MATERIALS AND METHODS The novel algorithm computes candidate points using peaks in three optimally selected projections and removes fictitious points by verifying detected peaks in additional projections. Computational complexity was significantly reduced by avoiding cluster analysis, while higher accuracy was achieved by using optimal projections and by applying Gaussian interpolation in peak detection. Computational time, accuracy and robustness were analysed through Monte Carlo simulations and experiments. The method was employed in a prototype MRI guided prostate biopsy system and used in preclinical experiments. RESULTS The computational time for 6 markers was better than 2 ms, an improvement of up to 100 times, compared to the method by Flask et al. (J Magn Reson Imaging 14(5):617-627, 2001). Experimental maximum localization error was lower than 0.3 mm; standard deviation was 0.06 mm. Targeting error was about 1 mm. Tracking update rate was about 10 Hz. CONCLUSION The proposed method is particularly suitable in systems requiring any of the following: high frame rate, tracking of three or more markers, data filtering or interleaving.
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Affiliation(s)
- Francesca Galassi
- Mechanical Engineering Department, Imperial College London, London, UK,
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45
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Benkert T, Ehses P, Blaimer M, Jakob PM, Breuer FA. Dynamically phase-cycled radial balanced SSFP imaging for efficient banding removal. Magn Reson Med 2014; 73:182-94. [PMID: 24478187 DOI: 10.1002/mrm.25113] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2013] [Revised: 12/09/2013] [Accepted: 12/12/2013] [Indexed: 11/07/2022]
Abstract
PURPOSE Balanced steady-state free precession (bSSFP) imaging suffers from banding artifacts due to its inherent sensitivity to inhomogeneities in the main magnetic field. These artifacts can be removed by the acquisition of multiple images at different frequency offsets. However, conventional phase-cycling is hindered by a long scan time. The purpose of this work is to present a novel approach for efficient banding removal in bSSFP imaging. THEORY AND METHODS To this end, the phase-cycle during a single-shot radial acquisition of an image was dynamically changed. Thus, each projection is acquired with a different frequency offset. Using conventional radial gridding, an artifact-free image can be reconstructed out of this dataset. RESULTS The approach is validated at clinical field strength [3.0 Tesla (T)] as well as at ultrahigh field (9.4T). Robust elimination of banding artifacts was obtained for different imaging regions, including brain imaging at ultrahigh field with an in-plane resolution of 0.25 × 0.25 mm(2). Besides banding artifact-free imaging, the applicability of the proposed technique for fat-water separation is demonstrated. CONCLUSION Dynamically phase-cycled radial bSSFP has the potential for banding-free bSSFP imaging in a short scan time, in the presence of severe field inhomogeneities and at high resolution.
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Affiliation(s)
- Thomas Benkert
- Research Center Magnetic Resonance Bavaria (MRB), Würzburg, Germany
| | - Philipp Ehses
- Department of Biomedical Magnetic Resonance, University of Tübingen, Tübingen, Germany.,High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany
| | - Martin Blaimer
- Research Center Magnetic Resonance Bavaria (MRB), Würzburg, Germany
| | - Peter M Jakob
- Research Center Magnetic Resonance Bavaria (MRB), Würzburg, Germany.,Department of Experimental Physics 5, University of Würzburg, Würzburg, Germany
| | - Felix A Breuer
- Research Center Magnetic Resonance Bavaria (MRB), Würzburg, Germany
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46
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Bieri O, Scheffler K. Fundamentals of balanced steady state free precession MRI. J Magn Reson Imaging 2013; 38:2-11. [PMID: 23633246 DOI: 10.1002/jmri.24163] [Citation(s) in RCA: 160] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2011] [Accepted: 03/12/2013] [Indexed: 11/10/2022] Open
Affiliation(s)
- Oliver Bieri
- Division of Radiological Physics; Department of Radiology; University of Basel Hospital; Basel; Switzerland
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47
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Witschey WR, Littin S, Cocosco CA, Gallichan D, Schultz G, Weber H, Welz A, Hennig J, Zaitsev M. Stages: sub-Fourier dynamic shim updating using nonlinear magnetic field phase preparation. Magn Reson Med 2013; 71:57-66. [PMID: 23440677 DOI: 10.1002/mrm.24625] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2012] [Revised: 11/05/2012] [Accepted: 12/11/2012] [Indexed: 11/09/2022]
Abstract
Heterogeneity of the static magnetic field in magnetic resonance imaging may cause image artifacts and degradation in image quality. The field heterogeneity can be reduced by dynamically adjusting shim fields or dynamic shim updating, in which magnetic field homogeneity is optimized for each tomographic slice to improve image quality. A limitation of this approach is that a new magnetic field can be applied only once for each slice, otherwise image quality would improve somewhere to its detriment elsewhere in the slice. The motivation of this work is to overcome this limitation and develop a technique using nonlinear magnetic fields to dynamically shim the static magnetic field within a single Fourier-encoded volume or slice, called sub-Fourier dynamic shim updating. However, the nonlinear magnetic fields are not used as shim fields; instead, they impart a strong spatial dependence to the acquired MR signal by nonlinear phase preparation, which may be exploited to locally improve magnetic field homogeneity during acquisition. A theoretical description of the method is detailed, simulations and a proof-of-principle experiment are performed using a magnet coil with a known field geometry. The method is shown to remove artifacts associated with magnetic field homogeneity in balanced steady-state free-precession pulse sequences. We anticipate that this method will be useful to improve the quality of magnetic resonance images by removing deleterious artifacts associated with a heterogeneous static magnetic field.
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Affiliation(s)
- Walter Rt Witschey
- University of Pennsylvania, Philadelphia, PA, USA.,University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Sebastian Littin
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Chris A Cocosco
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Daniel Gallichan
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Gerrit Schultz
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Hans Weber
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Anna Welz
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Jürgen Hennig
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
| | - Maxim Zaitsev
- University Medical Center Freiburg, Freiburg i. Breisgau, Germany
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48
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Giri S, Xue H, Maiseyeu A, Kroeker R, Rajagopalan S, White RD, Zuehlsdorff S, Raman SV, Simonetti OP. Steady-state first-pass perfusion (SSFPP): a new approach to 3D first-pass myocardial perfusion imaging. Magn Reson Med 2013; 71:133-44. [PMID: 23440705 DOI: 10.1002/mrm.24638] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2012] [Revised: 12/12/2012] [Accepted: 12/20/2012] [Indexed: 11/10/2022]
Abstract
PURPOSE To describe and characterize a new approach to first-pass myocardial perfusion utilizing balanced steady-state free precession acquisition without the use of saturation recovery or other magnetization preparation. THEORY The balanced steady-state free precession sequence is inherently sensitive to contrast agent enhancement of the myocardium. This sensitivity can be used to advantage in first-pass myocardial perfusion imaging by eliminating the need for magnetization preparation. METHODS Bloch equation simulations, phantom experiments, and in vivo 2D imaging studies were run comparing the proposed technique with three other methods: saturation recovery spoiled gradient echo, saturation recovery steady-state free precession, and steady-state spoiled gradient echo without magnetization preparation. Additionally, an acquisition-reconstruction strategy for 3D perfusion imaging is proposed and initial experience with this approach is demonstrated in healthy subjects and one patient. RESULTS Phantom experiments verified simulation results showing the sensitivity of the balanced steady-state free precession sequence to contrast agent enhancement in solid tissue is similar to that of magnetization-prepared acquisitions. Images acquired in normal volunteers showed the proposed technique provided superior signal and signal-to-noise ratio compared with all other sequences at baseline as well as postcontrast. CONCLUSIONS A new approach to first-pass myocardial perfusion is presented that obviates the need for magnetization preparation and provides high signal-to-noise ratio.
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Affiliation(s)
- Shivraman Giri
- Department of Biomedical Engineering, The Ohio State University, Columbus, Ohio, USA; Dorothy M. Davis Heart and Lung Research Institute, The Ohio State University, Columbus, Ohio, USA; Siemens Healthcare, Chicago, Illinois, USA
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Gai ND, Stehning C, Nacif M, Bluemke DA. Modified Look-Locker T1 evaluation using Bloch simulations: human and phantom validation. Magn Reson Med 2013; 69:329-36. [PMID: 22457268 PMCID: PMC3826815 DOI: 10.1002/mrm.24251] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2011] [Revised: 02/17/2012] [Accepted: 02/23/2012] [Indexed: 01/23/2023]
Abstract
Modified Look-Locker imaging is frequently used for T(1) mapping of the myocardium. However, the specific effect of various MRI parameters (e.g., encoding scheme, modifications of flip angle, heart rate, T(2), and inversion times) on the accuracy of T(1) measurement has not been studied through Bloch simulations. In this work, modified Look-Locker imaging was characterized through a numerical solution for Bloch equations. MRI sequence parameters that may affect T(1) accuracy were systematically varied in the simulation. For validation, phantoms were constructed with various T(2) and T(1) times and compared with Bloch equation simulations. Human volunteers were also evaluated with various pulse sequences parameters to assess the validity of the numerical simulations. There was close agreement between simulated T(1) times and T(1) times measured in phantoms and volunteers. Lower T(2) times (i.e., <30 ms) resulted in errors greater than 5% for T(1) determination. Increasing maximum inversion time value improved T(1) accuracy particularly for precontrast myocardial T(1). Balanced steady-state free precession k space centric encoding improved accuracy for short T(1) times (post gadolinium), but linear encoding provided improved accuracy for precontrast T(1) values. Lower flip angles are preferred if the signal-to-noise ratio is sufficiently high. Bloch simulations for modified Look-Locker imaging provide an accurate method to comprehensively quantify the effect of pulse sequence parameters on T(1) accuracy. As an alternative to otherwise lengthy phantom studies or human studies, such simulations may be useful to optimize the modified Look-Locker imaging sequence and compare differences in T(1)-derived measurements from different scanners or institutions.
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Affiliation(s)
- Neville D Gai
- Radiology & Imaging Sciences, National Institutes of Health, Bethesda, Maryland 20892, USA.
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50
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Hargreaves BA. Rapid gradient-echo imaging. J Magn Reson Imaging 2012; 36:1300-13. [PMID: 23097185 DOI: 10.1002/jmri.23742] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2011] [Accepted: 05/24/2012] [Indexed: 11/07/2022] Open
Abstract
Gradient-echo sequences are widely used in magnetic resonance imaging (MRI) for numerous applications ranging from angiography to perfusion to functional MRI. Compared with spin-echo techniques, the very short repetition times of gradient-echo methods enable very rapid 2D and 3D imaging, but also lead to complicated "steady states." Signal and contrast behavior can be described graphically and mathematically, and depends strongly on the type of spoiling: fully balanced (no spoiling), gradient spoiling, or radiofrequency (RF)-spoiling. These spoiling options trade off between high signal and pure T(1) contrast, while the flip angle also affects image contrast in all cases, both of which can be demonstrated theoretically and in image examples. As with spin-echo sequences, magnetization preparation can be added to gradient-echo sequences to alter image contrast. Gradient-echo sequences are widely used for numerous applications such as 3D perfusion imaging, functional MRI, cardiac imaging, and MR angiography.
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Affiliation(s)
- Brian A Hargreaves
- Department of Radiology, Stanford University, Stanford, California, USA.
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