1
|
Gee CW, Andersen-Ranberg J, Boynton E, Rosen RZ, Jorgens D, Grob P, Holman HYN, Niyogi KK. Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan. Nat Commun 2024; 15:5456. [PMID: 38937455 DOI: 10.1038/s41467-024-49277-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 05/31/2024] [Indexed: 06/29/2024] Open
Abstract
Stramenopile algae contribute significantly to global primary productivity, and one class, Eustigmatophyceae, is increasingly studied for applications in high-value lipid production. Yet much about their basic biology remains unknown, including the nature of an enigmatic, pigmented globule found in vegetative cells. Here, we present an in-depth examination of this "red body," focusing on Nannochloropsis oceanica. During the cell cycle, the red body forms adjacent to the plastid, but unexpectedly it is secreted and released with the autosporangial wall following cell division. Shed red bodies contain antioxidant ketocarotenoids, and overexpression of a beta-carotene ketolase results in enlarged red bodies. Infrared spectroscopy indicates long-chain, aliphatic lipids in shed red bodies and cell walls, and UHPLC-HRMS detects a C32 alkyl diol, a potential precursor of algaenan, a recalcitrant cell wall polymer. We propose that the red body transports algaenan precursors from plastid to apoplast to be incorporated into daughter cell walls.
Collapse
Affiliation(s)
- Christopher W Gee
- Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Johan Andersen-Ranberg
- University of Copenhagen, Department of Plant and Environmental Sciences, Frederiksberg, DK-1871, Denmark
| | - Ethan Boynton
- Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Rachel Z Rosen
- Department of Chemistry, University of California, Berkeley, CA, 94702, USA
| | - Danielle Jorgens
- Electron Microscope Laboratory, University of California, Berkeley, CA, 94720, USA
| | - Patricia Grob
- Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA
- California Institute of Quantitative Biosciences, University of California, Berkeley, CA, 94720, USA
| | - Hoi-Ying N Holman
- Electron Microscope Laboratory, University of California, Berkeley, CA, 94720, USA
| | - Krishna K Niyogi
- Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA.
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
| |
Collapse
|
2
|
Solovchenko A, Lobakova E, Semenov A, Gorelova O, Fedorenko T, Chivkunova O, Parshina E, Maksimov G, Sluchanko NN, Maksimov E. Multimodal non-invasive probing of stress-induced carotenogenesis in the cells of microalga Bracteacoccus aggregatus. PROTOPLASMA 2024:10.1007/s00709-024-01956-9. [PMID: 38703269 DOI: 10.1007/s00709-024-01956-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 04/25/2024] [Indexed: 05/06/2024]
Abstract
Microalgae are the richest source of natural carotenoids-accessory photosynthetic pigments used as natural antioxidants, safe colorants, and nutraceuticals. Microalga Bracteacoccus aggregatus IPPAS C-2045 responds to stresses, including high light, with carotenogenesis-gross accumulation of secondary carotenoids (the carotenoids structurally and energetically uncoupled from photosynthesis). Precise mechanisms of cytoplasmic transport and subcellular distribution of the secondary carotenoids under stress are still unknown. Using multimodal imaging combining micro-Raman imaging (MRI), fluorescent lifetime (τ) imaging (FLIM), and transmission electron microscopy (TEM), we monitored ultrastructural and biochemical rearrangements of B. aggregatus cells during the stress-induced carotenogenesis. MRI revealed a decline in the diversity of molecular surrounding of the carotenoids in the cells compatible with the relocation of the bulk of the carotenoids in the cell from functionally and structurally heterogeneous photosynthetic apparatus to the more homogenous lipid matrix of the oleosomes. Two-photon FLIM highlighted the pigment transformation in the cell during the stress-induced carotenogenesis. The structures co-localized with the carotenoids with shorter τ (mainly chloroplast) shrunk, whereas the structures harboring secondary carotenoids with longer τ (mainly oleosomes) expanded. These changes were in line with the ultrastructural data (TEM). Fluorescence of B. aggregatus carotenoids, either in situ or in acetone extracts, possessed a surprisingly long lifetime. We hypothesize that the extension of τ of the carotenoids is due to their aggregation and/or association with lipids and proteins. The propagation of the carotenoids with prolonged τ is considered to be a manifestation of the secondary carotenogenesis suitable for its non-invasive monitoring with multimodal imaging.
Collapse
Affiliation(s)
- Alexei Solovchenko
- Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, GSP-1, Moscow, 119234, Russia.
| | - Elena Lobakova
- Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, GSP-1, Moscow, 119234, Russia
| | - Alexey Semenov
- Laboratory of Physics and Chemistry of Biological Membranes, Department of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow, 119234, Russia
- Department of Experimental Physics, Saarland University, 66123, Saarbrücken, Germany
| | - Olga Gorelova
- Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, GSP-1, Moscow, 119234, Russia
| | - Tatiana Fedorenko
- Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, GSP-1, Moscow, 119234, Russia
| | - Olga Chivkunova
- Department of Bioengineering, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, GSP-1, Moscow, 119234, Russia
| | - Evgenia Parshina
- Department of Biology, M.V. Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow, 119234, Russia
| | - Georgy Maksimov
- Department of Biology, M.V. Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow, 119234, Russia
| | - Nikolai N Sluchanko
- Federal Research Center of Biotechnology, Russian Academy of Sciences, Leninsky Av. 33, Moscow, 119071, Russia
| | - Eugene Maksimov
- Laboratory of Physics and Chemistry of Biological Membranes, Department of Biology, Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow, 119234, Russia
| |
Collapse
|
3
|
Ciccia T, Pandard P, Ciffroy P, Urien N, Lafay L, Bado-Nilles A. Sub-lethal toxicity of five disinfection by-products on microalgae determined by flow cytometry - Lines of evidence for adverse outcome pathways. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 266:115582. [PMID: 37862747 DOI: 10.1016/j.ecoenv.2023.115582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 10/06/2023] [Accepted: 10/11/2023] [Indexed: 10/22/2023]
Abstract
Standardised tests are often used to determine the ecotoxicity of chemicals and focus mainly on one or a few generic endpoints (e.g. mortality, growth), but information on the sub-cellular processes leading to these effects remain usually partial or missing. Flow cytometry (FCM) can be a practical tool to study the physiological responses of individual cells (such as microalgae) exposed to a stress via the use of fluorochromes and their morphology and natural autofluorescence. This work aimed to assess the effects of five chlorine-based disinfection by-products (DBPs) taken individually on growth and sub-cellular endpoints of the green microalgae Raphidocelis subcapitata. These five DBPs, characteristic of a chlorinated effluent, are the following monochloroacetic acid (MCAA), dichloroacetic acid (DCAA), trichloroacetic acid (TCAA), bromochloroacetic acid (BCAA) and 1,1-dichloropropan-2-one (1,1-DCP). Results showed that 1,1-DCP had the strongest effect on growth inhibition (EC50 = 1.8 mg.L-1), followed by MCAA, TCAA, BCAA and DCAA (EC50 of 10.1, 15.7, 27.3 and 64.5 mg.L-1 respectively). Neutral lipid content, reactive oxygen species (ROS) formation, red autofluorescence, green autofluorescence, size and intracellular complexity were significantly affected by the exposure to the five DBPs. Only mitochondrial membrane potential did not show any variation. Important cellular damages (>10%) were observed for only two of the chemicals (BCAA and 1,1-DCP) and were probably due to ROS formation. The most sensitive and informative sub-lethal parameter studied was metabolic activity (esterase activity), for which three types of response were observed. Combining all this information, an adverse outcome pathways framework was proposed to explain the effect of the targeted chemicals on R. subcapitata. Based on these results, both FCM sub-cellular analysis and conventional endpoint of algal toxicity were found to be complementary approaches.
Collapse
Affiliation(s)
- Théo Ciccia
- Laboratoire National d'Hydraulique et Environnement (LNHE), Division Recherche et Développement, Electricité de France (EDF), 6 Quai de Watier, 78401 Chatou Cedex 01, France.
| | - Pascal Pandard
- Institut National de l'Environnement Industriel et des Risques (INERIS), Parc Technologique Alata, BP 2, 60550 Verneuil-en-Halatte, France
| | - Philippe Ciffroy
- Laboratoire National d'Hydraulique et Environnement (LNHE), Division Recherche et Développement, Electricité de France (EDF), 6 Quai de Watier, 78401 Chatou Cedex 01, France
| | - Nastassia Urien
- Laboratoire National d'Hydraulique et Environnement (LNHE), Division Recherche et Développement, Electricité de France (EDF), 6 Quai de Watier, 78401 Chatou Cedex 01, France
| | - Léo Lafay
- Laboratoire National d'Hydraulique et Environnement (LNHE), Division Recherche et Développement, Electricité de France (EDF), 6 Quai de Watier, 78401 Chatou Cedex 01, France
| | - Anne Bado-Nilles
- Institut National de l'Environnement Industriel et des Risques (INERIS), Parc Technologique Alata, BP 2, 60550 Verneuil-en-Halatte, France
| |
Collapse
|
4
|
Murugesan RC, Choudhury MTA, Rozhin A. 2D excitation-emission fluorescence mapping analysis of plant food pigments. Food Chem 2023; 418:135875. [PMID: 36965388 DOI: 10.1016/j.foodchem.2023.135875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 02/07/2023] [Accepted: 03/03/2023] [Indexed: 03/08/2023]
Abstract
Homogeneous dispersion of plant food pigments is indispensable to study their characteristic fluorescence features for non-destructive rapid monitoring of food systems. However, it is highly challenging to obtain such optical grade homogenized stable dispersion of various plant pigments in aqueous media for tracing their precise fluorescence signatures. Herein, we demonstrate a unique strategy to disperse various pigments, such as chlorophylls, carotenoids and phenolic compounds by the high-speed shear-force mixing of fresh green and red bell peppers (Capsicum annuum) in an aqueous medium with followed centrifugation and filtration. An advanced FLuorescence Excitation-emission (FLE) mapping and optical absorption analysis from the optical grade aqueous bell peppers dispersion allow simultaneous probing of chlorophylls, phenolic compounds and carotenoids by their characteristic electronic transitions. The demonstrated sampling protocols and spectroscopic analysis will be highly beneficial to obtain advanced spectroscopic databases from different food materials for rapid food analysis and quality control.
Collapse
Affiliation(s)
- Raghavan Chinnambedu Murugesan
- Nanoscience Research Group and The Wolfson Centre for Photonics for Food and Agri-Tech, Aston Institute of Photonic Technologies, College of Engineering and Physical Sciences, Aston University, Birmingham B4 7ET, United Kingdom
| | - Mohammed Thofike Ahmed Choudhury
- Nanoscience Research Group and The Wolfson Centre for Photonics for Food and Agri-Tech, Aston Institute of Photonic Technologies, College of Engineering and Physical Sciences, Aston University, Birmingham B4 7ET, United Kingdom
| | - Alex Rozhin
- Nanoscience Research Group and The Wolfson Centre for Photonics for Food and Agri-Tech, Aston Institute of Photonic Technologies, College of Engineering and Physical Sciences, Aston University, Birmingham B4 7ET, United Kingdom.
| |
Collapse
|
5
|
Gonçalves TR, Galastri Teixeira G, Santos PM, Matsushita M, Valderrama P. Excitation-Emission matrices and PARAFAC in the investigation of the bioactive compound effects from the flavoring process in olive oils. Microchem J 2022. [DOI: 10.1016/j.microc.2022.108360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
|
6
|
Random Mutagenesis as a Promising Tool for Microalgal Strain Improvement towards Industrial Production. Mar Drugs 2022; 20:md20070440. [PMID: 35877733 PMCID: PMC9318807 DOI: 10.3390/md20070440] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 06/27/2022] [Accepted: 06/27/2022] [Indexed: 02/06/2023] Open
Abstract
Microalgae have become a promising novel and sustainable feedstock for meeting the rising demand for food and feed. However, microalgae-based products are currently hindered by high production costs. One major reason for this is that commonly cultivated wildtype strains do not possess the robustness and productivity required for successful industrial production. Several strain improvement technologies have been developed towards creating more stress tolerant and productive strains. While classical methods of forward genetics have been extensively used to determine gene function of randomly generated mutants, reverse genetics has been explored to generate specific mutations and target phenotypes. Site-directed mutagenesis can be accomplished by employing different gene editing tools, which enable the generation of tailor-made genotypes. Nevertheless, strategies promoting the selection of randomly generated mutants avoid the introduction of foreign genetic material. In this paper, we review different microalgal strain improvement approaches and their applications, with a primary focus on random mutagenesis. Current challenges hampering strain improvement, selection, and commercialization will be discussed. The combination of these approaches with high-throughput technologies, such as fluorescence-activated cell sorting, as tools to select the most promising mutants, will also be discussed.
Collapse
|
7
|
Moraz A, Breider F. Detection and Quantification of Nonlabeled Polystyrene Nanoparticles Using a Fluorescent Molecular Rotor. Anal Chem 2021; 93:14976-14984. [PMID: 34735123 DOI: 10.1021/acs.analchem.1c02055] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Plastic pollution has reached alarming levels in recent years. While macro- and microplastic pollution are attested and studied since the 1970s, much less is known about the associated nanoscopic fragments. Due to their ability to cross biological barriers and their extended surface area-to-volume ratio, nanoplastics (NPs) are currently considered as one of the major threats for aquatic and terrestrial environments. Therefore, analytical tools are urgently needed to detect and quantify NPs. In this study, a method exploiting the dependence of the fluorescence quantum yield of a probe, namely, 9-(2,2-dicyanovinyl)julolidine (DCVJ), toward its microenvironment was assessed to detect and quantify polystyrene nanoplastics (PSNs). In the presence of PSNs and after excitation at 450 nm, the single-emission band fluorescent molecular rotor (FMR) emission spectrum displays a second peak at 620 nm, which increases with the concentration of PSNs. In pure water, a limit of detection and quantification range of 475-563 μg·L-1 and 1.582-1.875 mg·L-1, respectively, were obtained for 49 nm diameter polystyrene beads (PSB49). The results associated with 100 nm diameter PSNs amount to 518 μg·L-1 and 1.725 mg·L-1. The robustness of the method toward different parameters, the complexity of the matrix, and the PSN characteristics was also assessed. Finally, the method was applied on biological samples. While PSB49 quantification was achieved using radish sprouts at concentrations up to 200 mg·L-1, it was more challenging when handling mussel tissues. This work presents the feasibility to quantify PSNs using DCVJ fluorescence. It paves the way to new perspectives in the challenging field of NPs.
Collapse
Affiliation(s)
- Angélique Moraz
- Ecole Polytechnique Fédérale de Lausanne - EPFL, Central Environmental Laboratory, ENAC, IIE, Station 2, Lausanne CH-1015, Switzerland
| | - Florian Breider
- Ecole Polytechnique Fédérale de Lausanne - EPFL, Central Environmental Laboratory, ENAC, IIE, Station 2, Lausanne CH-1015, Switzerland
| |
Collapse
|
8
|
Morales-de la Cruz X, Mandujano-Chávez A, Browne DR, Devarenne TP, Sánchez-Segura L, López MG, Lozoya-Gloria E. In Silico and Cellular Differences Related to the Cell Division Process between the A and B Races of the Colonial Microalga Botryococcus braunii. Biomolecules 2021; 11:biom11101463. [PMID: 34680096 PMCID: PMC8533097 DOI: 10.3390/biom11101463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 09/23/2021] [Accepted: 09/25/2021] [Indexed: 11/23/2022] Open
Abstract
Botryococcus braunii produce liquid hydrocarbons able to be processed into combustion engine fuels. Depending on the growing conditions, the cell doubling time can be up to 6 days or more, which is a slow growth rate in comparison with other microalgae. Few studies have analyzed the cell cycle of B. braunii. We did a bioinformatic comparison between the protein sequences for retinoblastoma and cyclin-dependent kinases from the A (Yamanaka) and B (Showa) races, with those sequences from other algae and Arabidopsis thaliana. Differences in the number of cyclin-dependent kinases and potential retinoblastoma phosphorylation sites between the A and B races were found. Some cyclin-dependent kinases from both races seemed to be phylogenetically more similar to A. thaliana than to other microalgae. Microscopic observations were done using several staining procedures. Race A colonies, but not race B, showed some multinucleated cells without chlorophyll. An active mitochondrial net was detected in those multinucleated cells, as well as being defined in polyphosphate bodies. These observations suggest differences in the cell division processes between the A and B races of B. braunii.
Collapse
Affiliation(s)
- Xochitl Morales-de la Cruz
- Genetic Engineering Department, CINVESTAV-IPN Irapuato Unit, Irapuato 36824, Mexico; (X.M.-d.l.C.); (L.S.-S.)
| | | | - Daniel R. Browne
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA; (D.R.B.); (T.P.D.)
- Pacific Biosciences, Chicago, IL 60606, USA
| | - Timothy P. Devarenne
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA; (D.R.B.); (T.P.D.)
| | - Lino Sánchez-Segura
- Genetic Engineering Department, CINVESTAV-IPN Irapuato Unit, Irapuato 36824, Mexico; (X.M.-d.l.C.); (L.S.-S.)
| | - Mercedes G. López
- Biochemistry and Biotechnology Department, CINVESTAV-IPN Irapuato Unit, Irapuato 36824, Mexico;
| | - Edmundo Lozoya-Gloria
- Genetic Engineering Department, CINVESTAV-IPN Irapuato Unit, Irapuato 36824, Mexico; (X.M.-d.l.C.); (L.S.-S.)
- Correspondence: ; Tel.: +52-462-6239659
| |
Collapse
|
9
|
Schüler LM, Bombo G, Duarte P, Santos TF, Maia IB, Pinheiro F, Marques J, Jacinto R, Schulze PSC, Pereira H, Barreira L, Varela JCS. Carotenoid biosynthetic gene expression, pigment and n-3 fatty acid contents in carotenoid-rich Tetraselmis striata CTP4 strains under heat stress combined with high light. BIORESOURCE TECHNOLOGY 2021; 337:125385. [PMID: 34147770 DOI: 10.1016/j.biortech.2021.125385] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 06/02/2021] [Accepted: 06/03/2021] [Indexed: 06/12/2023]
Abstract
In this study, two carotenoid-rich strains of the euryhaline microalga Tetraselmis striata CTP4 were isolated by random mutagenesis combined with selection via fluorescence activated cell sorting and growth on norflurazon. Both strains, ED5 and B11, showed an up to 1.5-fold increase in carotenoid contents as compared with the wildtype, independent of the growth conditions. More specifically, violaxanthin, β-carotene and lutein contents reached as high as 1.63, 4.20 and 3.81 mg g-1 DW, respectively. Genes coding for phytoene synthase, phytoene desaturase, lycopene-β-cyclase and ε-ring hydroxylase involved in carotenoid biosynthesis were found to be upregulated in ED5 and B11 cells as compared to the wildtype. Both strains showed higher contents of eicosapentaenoic acid as compared with those of the wildtype, reaching up to 4.41 and 2.88 mg g-1 DW, respectively. Overall, these results highlight the complexity of changes in carotenoid biosynthesis regulation that are required to improve pigment contents in microalgae.
Collapse
Affiliation(s)
- Lisa M Schüler
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Gabriel Bombo
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Paulo Duarte
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Tamára F Santos
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Inês B Maia
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Filipa Pinheiro
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - José Marques
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Rita Jacinto
- Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Peter S C Schulze
- Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Hugo Pereira
- Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Luísa Barreira
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - João C S Varela
- Marine Biotechnology Group, Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; Green Colab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal.
| |
Collapse
|
10
|
Radomski FAD, de Araujo Duarte C, Ribeiro E, de Sá EL. Optical Investigation of Essential Oils Using Absorbance and Photoluminescence. APPLIED SPECTROSCOPY 2021; 75:1136-1145. [PMID: 33464154 DOI: 10.1177/0003702821989694] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Essential oils are complex mixtures of organic substances with large commercial importance in the pharmaceutical, food, fragrance, and cosmetic industries due to their organoleptic and biological properties. Also, these materials are also luminescent what has taken several studies about its potential uses for the detection and quality control of essential oils, imaging, and for the investigation of the synergies of their constituents. Concerning this, the present work is dedicated to studying the optical properties of selected essential oils: citronella (Cymbopogon winterianus), Japanese mint (Mentha arvensis), clove bud (Syzygium aromaticum), and bergamot (Citrus bergamia). We carried out a comparative study of the photoluminescence and the ultraviolet-visible optical absorption (abs-UV-Vis) of these essential oils with their typical constituents. To inspect the effects of the intermolecular interactions on the optical response of these systems, mixtures between the essential oils constituents following the expected average percent mass fraction were also studied. From these experiments, the main results were bathochromic effects in the abs-UV-Vis spectra; excimer formation in citral, isopulegol, isomenthone, eugenol, and eugenyl acetate; excimer emission enhancing and specific solvent effect in the essential oils photoluminescence spectra. These results contribute to the knowledge of essential oils' applications, especially in the evaluation of components' interactions through a simple abs-UV-Vis assay.
Collapse
Affiliation(s)
| | | | - Evaldo Ribeiro
- Departamento de Química, Universidade Federal do Paraná, Curitiba, PR, Brazil
| | - Eduardo Lemos de Sá
- Departamento de Química, Universidade Federal do Paraná, Curitiba, PR, Brazil
| |
Collapse
|
11
|
Sharma R, Ghoshal G. Characterization and cytotoxic activity of pigment extracted from Rhodotorula mucilaginosa to assess its potential as bio-functional additive in confectionary products. Journal of Food Science and Technology 2020; 58:2688-2698. [PMID: 34194104 DOI: 10.1007/s13197-020-04775-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 08/20/2020] [Accepted: 09/01/2020] [Indexed: 11/26/2022]
Abstract
The objective of the present investigation was to identify and characterize the pigment produced by yeast strain Rhodotorula mucilaginosa (MTCC-1403) using food industry residues. Onion peel powder and Mung bean husks were explored as substrate for submerged fermentation at previously optimized conditions in 3-L bioreactor. The pigment extraction was followed by quantification and characterization in terms of UV-visible spectroscopy, Fourier transform infrared spectroscopy, high performance liquid chromatography and fluorescence spectroscopy. Anti-carcinogenic activity of extracted pigment was measured against MCF-7 breast cancer cells. Furthermore, the pigment was used for the development of confectionary products (hard boiled candy and jelly) at different concentrations to evaluate its influence on bioactive properties and functionality. UV-visible spectroscopic reports revealed that torularhodin, β-carotene, and torulene were major carotenoids present. In case of anti-carcinogenic activity, cell inhibition of 21.21% was observed with 40 μg of the extracted pigment after 72 h of incubation against MCF-7 cells. Significant influence of extracted pigment on confectionary products was observed for antioxidant activity, carotenoid content, color profile and sensory evaluation.
Collapse
Affiliation(s)
- Rajan Sharma
- Dr. S. S. Bhatnagar University Institute of Chemical Engineering and Technology, Panjab University, Chandigarh, 160014 India
- Depertment of Food Science and Technology, Punjab Agricultural University, Ludhiana, India
| | - Gargi Ghoshal
- Dr. S. S. Bhatnagar University Institute of Chemical Engineering and Technology, Panjab University, Chandigarh, 160014 India
| |
Collapse
|
12
|
Oleksienko AA, Kot YG, Komaristaya VP. DNA-Specific DAPI Staining of the Pyrenoid Matrix During its Fission in Dunaliella salina (Dunal) Teodoresco (Chlorophyta). Curr Microbiol 2020; 77:3450-3459. [PMID: 32780204 DOI: 10.1007/s00284-020-02159-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 08/03/2020] [Indexed: 11/29/2022]
Abstract
The algal pyrenoid is a naked phase-separated liquid compartment inside the chloroplast consisting predominantly of densely packaged Rubisco and most often transversed by a system of lipid membranes. The pyrenoid participates in carbon-concentrating mechanisms of algae. During the cell division, the daughter cells of algae acquire the pyrenoids via their assembly or fission, the mechanisms of which are not fully understood. We suppose that the chloroplast nucleoid scaffolds the new pyrenoid like the cyanobacterial nucleoid positions carboxysomes before the cell division. This work was aimed at visualization and localization of the chloroplast DNA relative to the pyrenoid in synchronously dividing cells of Dunaliella salina with DNA-specific fluorescent DAPI stain through the fluorescent confocal microscope. The intense DNA-specific blue DAPI fluorescence was discovered in the pyrenoids matrix under the starch shell in the presumably pre-mitotic cells, during and following the pyrenoid fission. In the interphase cells, the chloroplast DNA localized both in the pyrenoid core and in several small nucleoids on the outer surface of the starch shell around the pyrenoid. The observations were compared with the literature data on the same and other algal species. The spatial pre-requisite exists in D. salina for the chloroplast nucleoid to scaffold the pyrenoid fission. A potential alternative explanation was declared being the algal pyrenoid as the chloroplast genetic center. The theoretical and practical implications of the findings were discussed.
Collapse
Affiliation(s)
- Anna A Oleksienko
- The School of Biology, V.N. Karazin Kharkiv National University, Svobody sq., 4, Kharkiv, 61022, Ukraine
| | - Yurii G Kot
- The School of Biology, V.N. Karazin Kharkiv National University, Svobody sq., 4, Kharkiv, 61022, Ukraine
| | - Victoria P Komaristaya
- The School of Biology, V.N. Karazin Kharkiv National University, Svobody sq., 4, Kharkiv, 61022, Ukraine.
| |
Collapse
|
13
|
Giampaoli P, Fernandes FF, Tavares AR, Domingos M, Cardoso-Gustavson P. Fluorescence emission spectra of target chloroplast metabolites (flavonoids, carotenoids, lipofuscins, pheophytins) as biomarkers of air pollutants and seasonal tropical climate. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:25363-25373. [PMID: 32347483 DOI: 10.1007/s11356-020-08646-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 03/27/2020] [Indexed: 06/11/2023]
Abstract
Chloroplasts have luminescent metabolites-chlorophyll being the most known one-whose fluorescence emission may be a useful tool to assess the physiological status of the plant. Some antioxidants (flavonoids and carotenoids), and byproducts of membrane rupture (lipofuscins) and chlorophyll degradation (pheophytins), are chloroplasts' fluorescent metabolites directly involved in plant response to environmental stressors and pollutants and may act as a biomarker of stress. Here we hypothesized that climatic variations and air pollutants induce alterations in the emission profile of chloroplasts' fluorescent metabolites in Tillandsia usneoides (Bromeliaceae). To test this hypothesis, an active biomonitoring study was performed during 2 years in five polluted sites located at the Metropolitan Region of Campinas (São Paulo State, Brazil), aiming to identify target chloroplasts' fluorescent metabolites acting as biomarkers of environmental stress. In situ identification and quantification of the intensity of the fluorescence emission from target metabolites (flavonoids, carotenoids, lipofuscins, and pheophytins) were performed by the observation of fresh leaf sections under confocal laser scanning microscopy. Changes in the profile of fluorescence emission were correlated with local climate and air pollution data. The fluorescence emissions of flavonoids and carotenoids varied seasonally, with significant influence of rainfall and NO2. Our results expand the use of T. usneoides as a bioindicator by using alterations in the fluorescence emission profile of chloroplast metabolites. This application may be especially interesting for NO2 biomonitoring.
Collapse
Affiliation(s)
- Patricia Giampaoli
- Programa de Pós-Graduação em Biodiversidade Vegetal e Meio Ambiente, Instituto de Botânica, Av. Miguel Stefano 3687, São Paulo, 04301-902, Brazil
| | - Francine Faia Fernandes
- Programa de Pós-Graduação em Biodiversidade Vegetal e Meio Ambiente, Instituto de Botânica, Av. Miguel Stefano 3687, São Paulo, 04301-902, Brazil
| | | | - Marisa Domingos
- Instituto de Botânica, Av. Miguel Stefano 3687, São Paulo, 04301-902, Brazil
| | - Poliana Cardoso-Gustavson
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Rua Arcturus 03, São Bernardo do Campo, 09606-070, Brazil.
| |
Collapse
|
14
|
Abstract
Plants contain abundant autofluorescent molecules that can be used for biochemical, physiological, or imaging studies. The two most studied molecules are chlorophyll (orange/red fluorescence) and lignin (blue/green fluorescence). Chlorophyll fluorescence is used to measure the physiological state of plants using handheld devices that can measure photosynthesis, linear electron flux, and CO2 assimilation by directly scanning leaves, or by using reconnaissance imaging from a drone, an aircraft or a satellite. Lignin fluorescence can be used in imaging studies of wood for phenotyping of genetic variants in order to evaluate reaction wood formation, assess chemical modification of wood, and study fundamental cell wall properties using Förster Resonant Energy Transfer (FRET) and other methods. Many other fluorescent molecules have been characterized both within the protoplast and as components of cell walls. Such molecules have fluorescence emissions across the visible spectrum and can potentially be differentiated by spectral imaging or by evaluating their response to change in pH (ferulates) or chemicals such as Naturstoff reagent (flavonoids). Induced autofluorescence using glutaraldehyde fixation has been used to enable imaging of proteins/organelles in the cell protoplast and to allow fluorescence imaging of fungal mycelium.
Collapse
|
15
|
Ivošević DeNardis N, Pletikapić G, Frkanec R, Horvat L, Vernier PT. From algal cells to autofluorescent ghost plasma membrane vesicles. Bioelectrochemistry 2020; 134:107524. [PMID: 32272336 DOI: 10.1016/j.bioelechem.2020.107524] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 03/25/2020] [Accepted: 03/27/2020] [Indexed: 11/29/2022]
Abstract
Plasma membrane vesicles can be effective, non-toxic carriers for microscale material transport, provide a convenient model for probing membrane-related processes, since intracellular biochemical processes are eliminated. We describe here a fine-tuned protocol for isolating ghost plasma membrane vesicles from the unicellular alga Dunaliella tertiolecta, and preliminary characterization of their structural features and permeability properties, with comparisons to giant unilamellar phospholipid vesicles. The complexity of the algal ghost membrane vesicles reconstructed from the native membrane material released after hypoosmotic stress lies between that of phospholipid vesicles and cells. AFM structural characterization of reconstructed vesicles shows a thick envelope and a nearly empty vesicle interior. The surface of the envelope contains a heterogeneous distribution of densely packed, nanometer-scale globules and pore-like structures which may be derived from surface coat proteins. Confocal fluorescence imaging reveals the highly pigmented photosynthetic apparatus located within the thylakoid membrane and retained in the vesicle membrane. Transport of the fluorescent dye calcein into ghost and giant unilamellar vesicles reveals significant differences in permeability. Expanded knowledge of this unique membrane system will contribute to the design of marine bio-inspired carriers for advanced biotechnological applications.
Collapse
Affiliation(s)
| | | | - Ruža Frkanec
- Centre for Research and Knowledge Transfer in Biotechnology, University of Zagreb, Croatia
| | | | - P Thomas Vernier
- Frank Reidy Research Center for Bioelectrics, Old Dominion University, Norfolk, VA, USA
| |
Collapse
|
16
|
Marcek Chorvatova A, Uherek M, Mateasik A, Chorvat D. Time-resolved endogenous chlorophyll fluorescence sensitivity to pH: study on Chlorella sp. algae. Methods Appl Fluoresc 2020; 8:024007. [PMID: 32074513 DOI: 10.1088/2050-6120/ab77f4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
To better understand pH-dependence of endogenous fluorescence of algae, we employed spectroscopy and microscopy methods, including advanced time-resolved fluorescence imaging microscopy (FLIM), using green algae Chlorella sp. as a model system. Absorption spectra confirmed two peaks, at 400-420 nm and 670 nm. Emission was maximal at 680 nm, with smaller peaks between 520 and 540 nm. Acidification led to a gradual decrease in the red fluorescence intensity with the maximum at 680 nm when excited by 450 nm laser. FLIM measurements, performed using 475 nm picoseconds excitation, uncovered that this effect is accompanied by a shortening of the tau1 fluorescence lifetime. Under severe acidification, we also noted an increase in the green fluorescence with a maximum between 520-540 nm and a shift toward 690-700 nm of the red fluorescence, accompanied by prolongation of the tau2 fluorescence lifetime. Gathered data increase our knowledge on the responsiveness of algae to acidification and indicate that endogenous fluorescence derived from chlorophylls can potentially serve as a biosensing tool for monitoring pH change in its natural environment.
Collapse
Affiliation(s)
- A Marcek Chorvatova
- Department of Biophotonics, International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia. Department of Biophysics, Faculty of Natural Sciences, University of Ss. Cyril and Methodius, nam. J Herdu 2, 91701 Trnava, Slovakia
| | | | | | | |
Collapse
|
17
|
Zienkiewicz A, Zienkiewicz K, Poliner E, Pulman JA, Du ZY, Stefano G, Tsai CH, Horn P, Feussner I, Farre EM, Childs KL, Brandizzi F, Benning C. The Microalga Nannochloropsis during Transition from Quiescence to Autotrophy in Response to Nitrogen Availability. PLANT PHYSIOLOGY 2020; 182:819-839. [PMID: 31740503 PMCID: PMC6997683 DOI: 10.1104/pp.19.00854] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Accepted: 11/04/2019] [Indexed: 05/03/2023]
Abstract
The marine microalgae Nannochloropsis oceanica (CCMP1779) is a prolific producer of oil and is considered a viable and sustainable resource for biofuel feedstocks. Nitrogen (N) availability has a strong impact on the physiological status and metabolism of microalgal cells, but the exact nature of this response is poorly understood. To fill this gap we performed transcriptomic profiling combined with cellular and molecular analyses of N. oceanica CCMP1779 during the transition from quiescence to autotrophy. N deprivation-induced quiescence was accompanied by a strong reorganization of the photosynthetic apparatus and changes in the lipid homeostasis, leading to accumulation of triacylglycerol. Cell cycle activation and re-establishment of photosynthetic activity observed in response to resupply of the growth medium with N were accompanied by a rapid degradation of triacylglycerol stored in lipid droplets (LDs). Besides observing LD translocation into vacuoles, we also provide evidence for direct interaction between the LD surface protein (NoLDSP) and AUTOPHAGY-RELATED8 (NoATG8) protein and show a role of microlipophagy in LD turnover in N. oceanica CCMP1779. This knowledge is crucial not only for understanding the fundamental mechanisms controlling the cellular energy homeostasis in microalgal cells but also for development of efficient strategies to achieve higher algal biomass and better microalgal lipid productivity.
Collapse
Affiliation(s)
- Agnieszka Zienkiewicz
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Great Lakes Bioenergy Center, Michigan State University, East Lansing, Michigan 48824
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, 87-100 Toruń, Poland
| | - Krzysztof Zienkiewicz
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, 87-100 Toruń, Poland
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, 37073 Goettingen, Germany
| | - Eric Poliner
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Cell and Molecular Biology Program, Michigan State University, East Lansing, Michigan 48824
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
| | - Jane A Pulman
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
- Center for Genomics-Enabled Plant Science, Michigan State University, East Lansing, Michigan 48824
| | - Zhi-Yan Du
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
| | - Giovanni Stefano
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
| | - Chia-Hong Tsai
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
| | - Patrick Horn
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, 37073 Goettingen, Germany
- Department of Plant Biochemistry, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, 37073 Goettingen, Germany
- Department of Plant Biochemistry, International Center for Advanced Studies of Energy Conversion (ICASEC), University of Goettingen, 37073 Goettingen, Germany
| | - Eva M Farre
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
| | - Kevin L Childs
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
- Center for Genomics-Enabled Plant Science, Michigan State University, East Lansing, Michigan 48824
| | - Federica Brandizzi
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
| | - Christoph Benning
- Michigan State University-United States Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Great Lakes Bioenergy Center, Michigan State University, East Lansing, Michigan 48824
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824
| |
Collapse
|
18
|
Pavlinska Z, Chorvat D, Mateasik A, Jerigova M, Velic D, Ivošević DeNardis N, Marcek Chorvatova A. Fluorescence responsiveness of unicellular marine algae Dunaliella to stressors under laboratory conditions. J Biotechnol 2020; 324S:100018. [PMID: 34154733 DOI: 10.1016/j.btecx.2020.100018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 03/06/2020] [Accepted: 05/04/2020] [Indexed: 11/25/2022]
Abstract
We examined the responsiveness of unicellular green alga Dunalliela tertiolecta to selected stressors employing confocal- and time-resolved imaging of endogenous fluorescence. Our aim was to monitor cell endogenous fluorescence changes under exposure to heavy metal Cd, acidification, as well as light by laser-induced photobleaching. The accumulation of Cd in algae cells was confirmed by the secondary ion mass spectroscopy technique. For the first time, custom-made computational techniques were employed to evaluate separately the fluorescence in the flagella vs. the body region. In the presence of Cd, we recorded increase in the green fluorescence in the flagella region in the form of opacities, without change in the fluorescence lifetimes, suggesting higher availability of the fluorescent molecules. Under acidification, we noted significant rise in the green fluorescence in the flagella region, but associated with longer fluorescence lifetimes, pointing to changes in the algae environment. Photobleaching experiments corroborated gathered observations. Obtained data support a differential responsiveness of the flagella vs. the body region to stressors and enable us to better understand the pathophysiological changes of algal cells in culture under stress conditions.
Collapse
Affiliation(s)
- Zuzana Pavlinska
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia; Faculty of Natural Sciences, University of Ss. Cyril and Methodius, nam. J Herdu 1, 91702 Trnava, Slovakia
| | - Dusan Chorvat
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia
| | - Anton Mateasik
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia
| | - Monika Jerigova
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia; Comenius University, Faculty of Natural Sciences, Department of Physical and Theoretical Chemistry, Ilkovicova 6, Bratislava 4, 84215, Slovakia
| | - Dusan Velic
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia; Comenius University, Faculty of Natural Sciences, Department of Physical and Theoretical Chemistry, Ilkovicova 6, Bratislava 4, 84215, Slovakia
| | | | - Alzbeta Marcek Chorvatova
- International Laser Centre, Ilkovicova 3, 84104 Bratislava, Slovakia; Faculty of Natural Sciences, University of Ss. Cyril and Methodius, nam. J Herdu 1, 91702 Trnava, Slovakia.
| |
Collapse
|
19
|
Zhang X, Li B, Xu H, Wells M, Tefsen B, Qin B. Effect of micronutrients on algae in different regions of Taihu, a large, spatially diverse, hypereutrophic lake. WATER RESEARCH 2019; 151:500-514. [PMID: 30641465 DOI: 10.1016/j.watres.2018.12.023] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 12/04/2018] [Accepted: 12/05/2018] [Indexed: 05/03/2023]
Abstract
Eutrophication or excessive nutrient richness is an impairment of many freshwater ecosystems and a prominent cause of harmful algal blooms. It is generally accepted that nitrogen and phosphorus nutrients are the primary causative factor, however, for systems subject to large anthropogenic perturbation, this may no longer be true, and the role of micronutrients is often overlooked. Here we report a study on Lake Tai (Taihu), a large, spatially diverse and hypereutrophic lake in China. We performed small-scale mesocosm nutrient limitation bioassays using boron, iron, cobalt, copper, molybdenum, nitrogen and phosphorus on phytoplankton communities sampled from different locations in Taihu to test the relative effects of micronutrients on in situ algal assemblages. In addition to commonly-used methods of chemical and biological analysis (including algal phytoplankton counting), we used flow cytometry coupled with data-driven analysis to monitor changes to algal assemblages. We found statistically significant effects of limitation or co-limitation for boron, cobalt, copper and iron. For copper at one location chlorophyll-a was over four times higher for amendment with copper, nitrogen and phosphorous than for the latter two alone. Since copper is often proposed as amendment for the environmental management of harmful algal blooms, this result is significant. We have three primary conclusions: first, the strong effects for Cu that we report here are mutually consistent across chlorophyll-a results, count data, and results determined from a data-driven approach to flow cytometry. Given that we cannot rule out a role for a Fe-Cu homeostatic link in causing these effects, future research into MNs and how they interact with N, P, and other MNs should be pursued to explore new interventions for effective management of HABs. Second, in view of the stimulatory effect that Cu exhibited, management of HABs with Cu as an algal biocide may not always be advisable. Third, our approach to flow cytometry offers data confirming our results from chemical and biological analysis, however also holds promise for future development as a high-throughput tool for use in understanding changes in algal assemblages. The results from this study concur with a small and emerging body of literature suggesting that the potential role of micronutrients in eutrophication requires further consideration in environmental management.
Collapse
Affiliation(s)
- Xiaokai Zhang
- Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, 215123, PR China; Department of Environmental Science, University of Liverpool, Brownlow Hill, Liverpool, L69 7ZX, United Kingdom
| | - Boling Li
- Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, 215123, PR China; Department of Environmental Science, University of Liverpool, Brownlow Hill, Liverpool, L69 7ZX, United Kingdom
| | - Hai Xu
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, PR China
| | - Mona Wells
- Freshwater Ecology Group, National Institute of Water and Atmospheric Research, Dunedin, 9016, New Zealand.
| | - Boris Tefsen
- Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, 215123, PR China
| | - Boqiang Qin
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, PR China
| |
Collapse
|
20
|
Ali H, Saleem M, Anser MR, Khan S, Ullah R, Bilal M. Validation of Fluorescence Spectroscopy to Detect Adulteration of Edible Oil in Extra Virgin Olive Oil (EVOO) by Applying Chemometrics. APPLIED SPECTROSCOPY 2018; 72:1371-1379. [PMID: 29712442 DOI: 10.1177/0003702818768485] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Due to high price and nutritional values of extra virgin olive oil (EVOO), it is vulnerable to adulteration internationally. Refined oil or other vegetable oils are commonly blended with EVOO and to unmask such fraud, quick, and reliable technique needs to be standardized and developed. Therefore, in this study, adulteration of edible oil (sunflower oil) is made with pure EVOO and analyzed using fluorescence spectroscopy (excitation wavelength at 350 nm) in conjunction with principal component analysis (PCA) and partial least squares (PLS) regression. Fluorescent spectra contain fingerprints of chlorophyll and carotenoids that are characteristics of EVOO and differentiated it from sunflower oil. A broad intense hump corresponding to conjugated hydroperoxides is seen in sunflower oil in the range of 441-489 nm with the maximum at 469 nm whereas pure EVOO has low intensity doublet peaks in this region at 441 nm and 469 nm. Visible changes in spectra are observed in adulterated EVOO by increasing the concentration of sunflower oil, with an increase in doublet peak and correspondingly decrease in chlorophyll peak intensity. Principal component analysis showed a distinct clustering of adulterated samples of different concentrations. Subsequently, the PLS regression model was best fitted over the complete data set on the basis of coefficient of determination (R2), standard error of calibration (SEC), and standard error of prediction (SEP) of values 0.99, 0.617, and 0.623 respectively. In addition to adulterant, test samples and imported commercial brands of EVOO were also used for prediction and validation of the models. Fluorescence spectroscopy combined with chemometrics showed its robustness to identify and quantify the specified adulterant in pure EVOO.
Collapse
Affiliation(s)
- Hina Ali
- 1 National Institute of Lasers and Optronics (NILOP), Islamabad, Pakistan
| | - Muhammad Saleem
- 1 National Institute of Lasers and Optronics (NILOP), Islamabad, Pakistan
| | | | - Saranjam Khan
- 1 National Institute of Lasers and Optronics (NILOP), Islamabad, Pakistan
| | - Rahat Ullah
- 1 National Institute of Lasers and Optronics (NILOP), Islamabad, Pakistan
| | - Muhammad Bilal
- 1 National Institute of Lasers and Optronics (NILOP), Islamabad, Pakistan
| |
Collapse
|
21
|
dos Santos PL, Cenni MF, Costa BB, Cury LA. β-carotene and oleic acid contributions to the optical properties of amazonic oils. J Photochem Photobiol A Chem 2017. [DOI: 10.1016/j.jphotochem.2017.07.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
22
|
Fu W, Chaiboonchoe A, Khraiwesh B, Sultana M, Jaiswal A, Jijakli K, Nelson DR, Al-Hrout A, Baig B, Amin A, Salehi-Ashtiani K. Intracellular spectral recompositioning of light enhances algal photosynthetic efficiency. SCIENCE ADVANCES 2017; 3:e1603096. [PMID: 28879232 PMCID: PMC5580877 DOI: 10.1126/sciadv.1603096] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Accepted: 08/05/2017] [Indexed: 06/07/2023]
Abstract
Diatoms, considered as one of the most diverse and largest groups of algae, can provide the means to reach a sustainable production of petrochemical substitutes and bioactive compounds. However, a prerequisite to achieving this goal is to increase the solar-to-biomass conversion efficiency of photosynthesis, which generally remains less than 5% for most photosynthetic organisms. We have developed and implemented a rapid and effective approach, herein referred to as intracellular spectral recompositioning (ISR) of light, which, through absorption of excess blue light and its intracellular emission in the green spectral band, can improve light utilization. We demonstrate that ISR can be used chemogenically, by using lipophilic fluorophores, or biogenically, through the expression of an enhanced green fluorescent protein (eGFP) in the model diatom Phaeodactylum tricornutum. Engineered P. tricornutum cells expressing eGFP achieved 28% higher efficiency in photosynthesis than the parental strain, along with an increased effective quantum yield and reduced nonphotochemical quenching (NPQ) induction levels under high-light conditions. Further, pond simulator experiments demonstrated that eGFP transformants could outperform their wild-type parental strain by 50% in biomass production rate under simulated outdoor sunlight conditions. Transcriptome analysis identified up-regulation of major photosynthesis genes in the engineered strain in comparison with the wild type, along with down-regulation of NPQ genes involved in light stress response. Our findings provide a proof of concept for a strategy of developing more efficient photosynthetic cell factories to produce algae-based biofuels and bioactive products.
Collapse
Affiliation(s)
- Weiqi Fu
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Amphun Chaiboonchoe
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Basel Khraiwesh
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- Center for Genomics and Systems Biology, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Mehar Sultana
- Center for Genomics and Systems Biology, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Ashish Jaiswal
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Kenan Jijakli
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - David R. Nelson
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- Center for Genomics and Systems Biology, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Ala’a Al-Hrout
- Department of Biology, College of Science, UAE University, P.O. Box 15551, Al Ain, UAE
| | - Badriya Baig
- Department of Biology, College of Science, UAE University, P.O. Box 15551, Al Ain, UAE
| | - Amr Amin
- Department of Biology, College of Science, UAE University, P.O. Box 15551, Al Ain, UAE
- Department of Zoology, Cairo University, Giza, Egypt
| | - Kourosh Salehi-Ashtiani
- Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- Center for Genomics and Systems Biology, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| |
Collapse
|
23
|
Rapid Estimation of Astaxanthin and the Carotenoid-to-Chlorophyll Ratio in the Green Microalga Chromochloris zofingiensis Using Flow Cytometry. Mar Drugs 2017; 15:md15070231. [PMID: 28753934 PMCID: PMC5532673 DOI: 10.3390/md15070231] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 07/03/2017] [Accepted: 07/11/2017] [Indexed: 12/19/2022] Open
Abstract
The green microalga Chromochloris zofingiensis can accumulate significant amounts of valuable carotenoids, mainly natural astaxanthin, a product with applications in functional food, cosmetics, nutraceuticals, and with potential therapeutic value in cardiovascular and neurological diseases. To optimize the production of astaxanthin, it is essential to monitor the content of astaxanthin in algal cells during cultivation. The widely used HPLC (high-performance liquid chromatography) method for quantitative astaxanthin determination is time-consuming and laborious. In the present work, we present a method using flow cytometry (FCM) for in vivo determination of the astaxanthin content and the carotenoid-to-chlorophyll ratio (Car/Chl) in mixotrophic C. zofingiensis. The method is based on the assessment of fluorescent characteristics of cellular pigments. The mean fluorescence intensity (MFI) of living cells was determined by FCM to monitor pigment formation based on the correlation between MFI detected in particular channels (FL1: 533 ± 15 nm; FL2: 585 ± 20 nm; FL3: >670 nm) and pigment content in algal cells. Through correlation and regression analysis, a linear relationship was observed between MFI in FL2 (band-pass filter, emission at 585 nm in FCM) and astaxanthin content (in HPLC) and applied for predicting astaxanthin content. With similar procedures, the relationships between MFI in different channels and Car/Chl ratio in mixotrophic C. zofingiensis were also determined. Car/Chl ratios could be estimated by the ratios of MFI (FL1/FL3, FL2/FL3). FCM is thus a highly efficient and feasible method for rapid estimation of astaxanthin content in the green microalga C. zofingiensis. The rapid FCM method is complementary to the current HPLC method, especially for rapid evaluation and prediction of astaxanthin formation as it is required during the high-throughput culture in the laboratory and mass cultivation in industry.
Collapse
|
24
|
Loira N, Mendoza S, Paz Cortés M, Rojas N, Travisany D, Genova AD, Gajardo N, Ehrenfeld N, Maass A. Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production. BMC SYSTEMS BIOLOGY 2017; 11:66. [PMID: 28676050 PMCID: PMC5496344 DOI: 10.1186/s12918-017-0441-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Accepted: 06/09/2017] [Indexed: 11/10/2022]
Abstract
Background Nannochloropsis salina (= Eustigmatophyceae) is a marine microalga which has become a biotechnological target because of its high capacity to produce polyunsaturated fatty acids and triacylglycerols. It has been used as a source of biofuel, pigments and food supplements, like Omega 3. Only some Nannochloropsis species have been sequenced, but none of them benefit from a genome-scale metabolic model (GSMM), able to predict its metabolic capabilities. Results We present iNS934, the first GSMM for N. salina, including 2345 reactions, 934 genes and an exhaustive description of lipid and nitrogen metabolism. iNS934 has a 90% of accuracy when making simple growth/no-growth predictions and has a 15% error rate in predicting growth rates in different experimental conditions. Moreover, iNS934 allowed us to propose 82 different knockout strategies for strain optimization of triacylglycerols. Conclusions iNS934 provides a powerful tool for metabolic improvement, allowing predictions and simulations of N. salina metabolism under different media and genetic conditions. It also provides a systemic view of N. salina metabolism, potentially guiding research and providing context to -omics data. Electronic supplementary material The online version of this article (doi:10.1186/s12918-017-0441-1) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- Nicolás Loira
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile. .,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile.
| | - Sebastian Mendoza
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile.,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile
| | - María Paz Cortés
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile.,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile.,Universidad Adolfo Ibáñez, Diagonal Las Torres 2640, Santiago, Chile
| | - Natalia Rojas
- Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile
| | - Dante Travisany
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile.,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile
| | - Alex Di Genova
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile.,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile
| | - Natalia Gajardo
- Centro de Investigación Austral Biotech, Universidad Santo Tomás, Avenida Ejercito 146, Santiago, Chile
| | - Nicole Ehrenfeld
- Centro de Investigación Austral Biotech, Universidad Santo Tomás, Avenida Ejercito 146, Santiago, Chile
| | - Alejandro Maass
- Mathomics, Center for Mathematical Modeling, Universidad de Chile, Beauchef 851, 7th Floor, Santiago, Chile.,Center for Genome Regulation (Fondap 15090007), Universidad de Chile, Blanco Encalada 2085, Santiago, Chile
| |
Collapse
|
25
|
Duval R, Duplais C. Fluorescent natural products as probes and tracers in biology. Nat Prod Rep 2017; 34:161-193. [DOI: 10.1039/c6np00111d] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Fluorescence is a remarkable property of many natural products in addition to their medicinal and biological value. Herein, we provide a review of these peculiar secondary metabolites to stimulate prospecting of them as original fluorescent tracers, endowed with unique photophysical properties and with applications in most fields of biology.
Collapse
Affiliation(s)
- Romain Duval
- IRD
- UMR 216 IRD MERIT (Mère et Enfant face aux Infections Tropicales)
- Université Paris-Descartes
- 75006 Paris
- France
| | - Christophe Duplais
- CNRS
- UMR 8172 EcoFoG (Ecologie des Forêts de Guyane)
- AgroParisTech
- Cirad
- INRA
| |
Collapse
|
26
|
Johns AMB, Love J, Aves SJ. Four Inducible Promoters for Controlled Gene Expression in the Oleaginous Yeast Rhodotorula toruloides. Front Microbiol 2016; 7:1666. [PMID: 27818654 PMCID: PMC5073140 DOI: 10.3389/fmicb.2016.01666] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2016] [Accepted: 10/05/2016] [Indexed: 01/24/2023] Open
Abstract
Rhodotorula (Rhodosporidium) toruloides is an oleaginous yeast with great biotechnological potential, capable of accumulating lipid up to 70% of its dry biomass, and of carotenoid biosynthesis. However, few molecular genetic tools are available for manipulation of this basidiomycete yeast and its high genomic GC content can make routine cloning difficult. We have developed plasmid vectors for transformation of R. toruloides which include elements for Saccharomyces cerevisiae in-yeast assembly; this method is robust to the assembly of GC-rich DNA and of large plasmids. Using such vectors we screened for controllable promoters, and identified inducible promoters from the genes NAR1, ICL1, CTR3, and MET16. These four promoters have independent induction/repression conditions and exhibit different levels and rates of induction in R. toruloides, making them appropriate for controllable transgene expression in different experimental situations. Nested deletions were used to identify regulatory regions in the four promoters, and to delimit the minimal inducible promoters, which are as small as 200 bp for the NAR1 promoter. The NAR1 promoter shows very tight regulation under repressed conditions as determined both by an EGFP reporter gene and by conditional rescue of a leu2 mutant. These new tools facilitate molecular genetic manipulation and controllable gene expression in R. toruloides.
Collapse
Affiliation(s)
| | - John Love
- Department of Biosciences, University of Exeter Exeter, UK
| | - Stephen J Aves
- Department of Biosciences, University of Exeter Exeter, UK
| |
Collapse
|
27
|
Clément A, Bacon R, Sirois S, Dorais M. Mature-ripe tomato spectral classification according to lycopene content and fruit type by visible, NIR reflectance and intrinsic fluorescence. QUALITY ASSURANCE AND SAFETY OF CROPS & FOODS 2015. [DOI: 10.3920/qas2014.0521] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- A. Clément
- Agriculture and Agri-Food Canada, Food Research and Development Centre, 3600 Casavant Ouest, St-Hyacinthe, QC, J2S 8E3, Canada
| | - R. Bacon
- Agriculture and Agri-Food Canada, Horticultural Research Centre, Laval University, 2480 boulevard Hochelaga, Quebec, QC, G1V 0A6, Canada
| | - S. Sirois
- Agriculture and Agri-Food Canada, Food Research and Development Centre, 3600 Casavant Ouest, St-Hyacinthe, QC, J2S 8E3, Canada
| | - M. Dorais
- Agriculture and Agri-Food Canada, Horticultural Research Centre, Laval University, 2480 boulevard Hochelaga, Quebec, QC, G1V 0A6, Canada
| |
Collapse
|
28
|
Abu-Ghosh S, Fixler D, Dubinsky Z, Iluz D. Continuous background light significantly increases flashing-light enhancement of photosynthesis and growth of microalgae. BIORESOURCE TECHNOLOGY 2015; 187:144-148. [PMID: 25846184 DOI: 10.1016/j.biortech.2015.03.119] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Revised: 03/24/2015] [Accepted: 03/25/2015] [Indexed: 06/04/2023]
Abstract
Under specific conditions, flashing light enhances the photosynthesis rate in comparison to continuous illumination. Here we show that a combination of flashing light and continuous background light with the same integrated photon dose as continuous or flashing light alone can be used to significantly enhance photosynthesis and increase microalgae growth. To test this hypothesis, the green microalga Dunaliella salina was exposed to three different light regimes: continuous light, flashing light, and concomitant application of both. Algal growth was compared under three different integrated light quantities; low, intermediate, and moderately high. Under the combined light regime, there was a substantial increase in all algal growth parameters, with an enhanced photosynthesis rate, within 3days. Our strategy demonstrates a hitherto undescribed significant increase in photosynthesis and algal growth rates, which is beyond the increase by flashing light alone.
Collapse
Affiliation(s)
- Said Abu-Ghosh
- The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 5290002, Israel; The Institute of Nanotechnology and Advanced Materials (BINA), Bar-Ilan University, Ramat-Gan 5290002, Israel.
| | - Dror Fixler
- Faculty of Engineering, Bar-Ilan University, Ramat-Gan 5290002, Israel; The Institute of Nanotechnology and Advanced Materials (BINA), Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - Zvy Dubinsky
- The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - David Iluz
- The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan 5290002, Israel
| |
Collapse
|
29
|
Davis RW, Carvalho BJ, Jones HDT, Singh S. The role of photo-osmotic adaptation in semi-continuous culture and lipid particle release from Dunaliella viridis. JOURNAL OF APPLIED PHYCOLOGY 2015; 27:109-123. [PMID: 25620852 PMCID: PMC4297879 DOI: 10.1007/s10811-014-0331-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Revised: 04/25/2014] [Accepted: 04/25/2014] [Indexed: 05/20/2023]
Abstract
Although great efforts have been made to elucidate the phenotypic responses of alga to varying levels of nutrients, osmotic environments, and photosynthetically active radiation intensities, the role of interactions among these variables is largely nebulous. Here, we describe a general method for establishing and maintaining semi-continuous cultures of the halophilic microalgal production strain, Dunaliella viridis, that is independent of variations in salinity and illumination intensity. Using this method, the cultures were evaluated to elucidate the overlapping roles of photosynthetic and osmotic adaptation on the accumulation and compositional variation of the biomass, photosynthetic productivity, and physiological biomarkers, as well as spectroscopic and morphological details at the single-cell level. Correlation matrices defining the relationships among the observables and based on variation of the illumination intensity and salinity were constructed for predicting bioproduct yields for varying culture conditions. Following maintenance of stable cultures for 6-week intervals, phenotypic responses to photo-osmotic drift were explored using a combination of single-cell hyperspectral fluorescence imaging and flow cytometry. In addition to morphological changes, release of lipid microparticles from the cells that is disproportionate to cell lysis was observed under hypotonic drift, indicating the existence of a reversible membrane permeation mechanism in Dunaliella. This phenomenon introduces the potential for low-cost strategies for recovering lipids and pigments from the microalgae by minimizing the requirement for energy intensive harvesting and dewatering of the biomass. The results should be applicable to outdoor culture, where seasonal changes resulting in variable solar flux and precipitation and evaporation rates are anticipated.
Collapse
Affiliation(s)
- Ryan W. Davis
- Sandia National Laboratories, Livermore, CA 94551 USA
| | | | - Howland D. T. Jones
- Sandia National Laboratories, Albuquerque, NM 87185 USA
- Present Address: HyperImage Solutions, Rio Rancho, NM 87144 USA
| | - Seema Singh
- Sandia National Laboratories, Livermore, CA 94551 USA
| |
Collapse
|
30
|
Bazracharza A, Rana M, Roy B, Tiwari A, Tripathi A. Optical Characterization of Medicinal Plants’ Extracts Used for the Treatment of Diabetes. ACTA ACUST UNITED AC 2014. [DOI: 10.1080/10496475.2014.910584] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
31
|
Davis RW, Jones HD, Collins AM, Ricken JB, Sinclair MB, Timlin JA, Singh S. Label-free measurement of algal triacylglyceride production using fluorescence hyperspectral imaging. ALGAL RES 2014. [DOI: 10.1016/j.algal.2013.11.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
32
|
Müller SM, Galliardt H, Schneider J, Barisas BG, Seidel T. Quantification of Förster resonance energy transfer by monitoring sensitized emission in living plant cells. FRONTIERS IN PLANT SCIENCE 2013; 4:413. [PMID: 24194740 PMCID: PMC3810607 DOI: 10.3389/fpls.2013.00413] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Accepted: 09/29/2013] [Indexed: 05/20/2023]
Abstract
Förster resonance energy transfer (FRET) describes excitation energy exchange between two adjacent molecules typically in distances ranging from 2 to 10 nm. The process depends on dipole-dipole coupling of the molecules and its probability of occurrence cannot be proven directly. Mostly, fluorescence is employed for quantification as it represents a concurring process of relaxation of the excited singlet state S1 so that the probability of fluorescence decreases as the probability of FRET increases. This reflects closer proximity of the molecules or an orientation of donor and acceptor transition dipoles that facilitates FRET. Monitoring sensitized emission by 3-Filter-FRET allows for fast image acquisition and is suitable for quantifying FRET in dynamic systems such as living cells. In recent years, several calibration protocols were established to overcome to previous difficulties in measuring FRET-efficiencies. Thus, we can now obtain by 3-filter FRET FRET-efficiencies that are comparable to results from sophisticated fluorescence lifetime measurements. With the discovery of fluorescent proteins and their improvement toward spectral variants and usability in plant cells, the tool box for in vivo FRET-analyses in plant cells was provided and FRET became applicable for the in vivo detection of protein-protein interactions and for monitoring conformational dynamics. The latter opened the door toward a multitude of FRET-sensors such as the widely applied Ca(2+)-sensor Cameleon. Recently, FRET-couples of two fluorescent proteins were supplemented by additional fluorescent proteins toward FRET-cascades in order to monitor more complex arrangements. Novel FRET-couples involving switchable fluorescent proteins promise to increase the utility of FRET through combination with photoactivation-based super-resolution microscopy.
Collapse
Affiliation(s)
- Sara M. Müller
- Dynamic Cell Imaging, Faculty of Biology, Bielefeld UniversityBielefeld, Germany
| | - Helena Galliardt
- Dynamic Cell Imaging, Faculty of Biology, Bielefeld UniversityBielefeld, Germany
| | - Jessica Schneider
- Bioinformatic Resource Facility, Center for Biotechnology, Bielefeld UniversityBielefeld, Germany
| | - B. George Barisas
- Chemistry Department, Colorado State UniversityFort Collins, CO, USA
| | - Thorsten Seidel
- Dynamic Cell Imaging, Faculty of Biology, Bielefeld UniversityBielefeld, Germany
- *Correspondence: Thorsten Seidel, Dynamic Cell Imaging, Faculty of Biology, Bielefeld University, Universitätsstraße 25, 33501 Bielefeld, Germany e-mail:
| |
Collapse
|
33
|
Gomes S, Torres AG, Godoy R, Pacheco S, Carvalho J, Nutti M. Effects of boiling and frying on the bioaccessibility of beta-carotene in yellow-fleshed cassava roots (Manihot esculenta Crantz cv. BRS Jari). Food Nutr Bull 2013; 34:65-74. [PMID: 23767282 DOI: 10.1177/156482651303400108] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
BACKGROUND The effects of boiling and frying on the bioaccessibility of all-trans-beta-carotene in biofortified BRS Jari cassava roots have not been investigated, although these are conventional methods of cassava preparation. OBJECTIVE The aims of the present study were to investigate beta-carotene micellarization efficiency of yellow-fleshed BRS Jari cassava roots after boiling and frying, as an indicator of the bioaccessibility of this carotenoid, and to apply fluorescence microscopy to investigate beta-carotene in the emulsified fraction. METHODS Uncooked, boiled, and fried cassava roots were digested in vitro for the evaluation, by reversed-phase high-performance liquid chromatography (HPLC), of the efficiency of micellarization of all-trans-beta-carotene in BRS Jari cassava roots. Fluorescence microscopy of the micellar fraction was used to confirm the presence of beta-carotene in the emulsified fraction and to observe the structure of the microemulsion from the boiled and fried cassava samples. RESULTS Fried cassava roots showed the highest (p < .05) micellarization efficiency for total carotenoids and all-trans-beta-carotene (14.1 +/- 2.25% and 14.37 +/- 2.44%, respectively), compared with boiled and raw samples. Fluorescence microscopy showed that after in vitro digestion there were no carotenoid crystals in the micellar fraction, but rather that this fraction presented a biphasic system compatible with emulsified carotenoids, which was consistent with the expected high bioavailability of beta-carotene in this fraction. CONCLUSIONS Increased emulsification and bioaccessibility of beta-carotene from fried biofortified BRS Jari cassava roots compensates for chemical losses during preparation, indicating that this preparation is suitable for home use of BRS Jari cassava roots and might represent a relatively good food source of bioavailable provitamin A.
Collapse
Affiliation(s)
- Suellen Gomes
- Laboratório de Bioquímica Nutricional e de Alimentos, Instituto de Química, Universidade Federal do Rio de Janeiro, Brazil
| | | | | | | | | | | |
Collapse
|
34
|
Manzo N, Di Luccia B, Isticato R, D’Apuzzo E, De Felice M, Ricca E. Pigmentation and sporulation are alternative cell fates in Bacillus pumilus SF214. PLoS One 2013; 8:e62093. [PMID: 23634224 PMCID: PMC3636246 DOI: 10.1371/journal.pone.0062093] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Accepted: 03/15/2013] [Indexed: 11/19/2022] Open
Abstract
Bacillus pumilus SF214 is a spore forming bacterium, isolated from a marine sample, able to produce a matrix and a orange-red, water soluble pigment. Pigmentation is strictly regulated and high pigment production was observed during the late stationary growth phase in a minimal medium and at growth temperatures lower than the optimum. Only a subpopulation of stationary phase cells produced the pigment, indicating that the stationary culture contains a heterogeneous cell population and that pigment synthesis is a bimodal phenomenon. The fraction of cells producing the pigment varied in the different growth conditions and occured only in cells not devoted to sporulation. Only some of the pigmented cells were also able to produce a matrix. Pigment and matrix production in SF214 appear then as two developmental fates both alternative to sporulation. Since the pigment had an essential role in the cell resistance to oxidative stress conditions, we propose that within the heterogeneous population different survival strategies can be followed by the different cells.
Collapse
Affiliation(s)
- Nicola Manzo
- Department of Biology, Federico II University, Napoli, Italy
| | | | | | - Enrica D’Apuzzo
- Department of Biology, Federico II University, Napoli, Italy
| | | | - Ezio Ricca
- Department of Biology, Federico II University, Napoli, Italy
- * E-mail:
| |
Collapse
|
35
|
Davis RW, Volponi JV, Jones HDT, Carvalho BJ, Wu H, Singh S. Multiplex fluorometric assessment of nutrient limitation as a strategy for enhanced lipid enrichment and harvesting of Neochloris oleoabundans. Biotechnol Bioeng 2012; 109:2503-12. [PMID: 22488355 DOI: 10.1002/bit.24517] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2011] [Revised: 03/12/2012] [Accepted: 03/21/2012] [Indexed: 11/12/2022]
Abstract
Detailed in this study are the results of fluorometric assays used to assess the impact of gradual nutrient limitation versus punctuated nitrate limitation on the lipid content and morphology of Neochloris oleoabundans cells in batch culture. Punctuated nitrate limitation was imposed during pre-log, log, late-log, stationary, and senescent growth phases, and the cells were analyzed by bulk fluorescence emission, flow cytometry, and hyperspectral fluorescence imaging. In addition to intrinsic spectroscopic signatures provided by scatter and endogenous fluorescence, Nile Red staining was employed to monitor relative changes in lipid concentration. Analysis of the fluorescence images and temporal data sets was performed using multivariate curve resolution and fitting to logistic growth models to extract parameters of interest. The spectral components independently isolated from the image and temporal data sets showed close agreement with one another, especially relating to chlorophylls and Nile Red in polar and neutral lipid fractions, respectively. The fastest accumulation and highest total neutral lipid per cell and per chlorophyll were obtained with punctuated nitrate limitation during log phase growth on day 4 of culture. The presence of unbound chlorophyll in the resulting lipid bodies supports a membrane recycling TAG accumulation mechanism mediated by chloropolast-ER lipid exchange. Furthermore, an increase in cell size, indicated by forward scatter, was also found to correlate with increased neutral lipid, providing a size selection mechanism for passive harvest of algal cells at peak lipid enrichment.
Collapse
Affiliation(s)
- Ryan W Davis
- Sandia National Laboratories, Biomass Science and Conversion Technology Department, 7011 East Avenue, Livermore, California, USA
| | | | | | | | | | | |
Collapse
|
36
|
Kleinegris DMM, van Es MA, Janssen M, Brandenburg WA, Wijffels RH. Phase toxicity of dodecane on the microalga Dunaliella salina. JOURNAL OF APPLIED PHYCOLOGY 2011; 23:949-958. [PMID: 22131645 PMCID: PMC3210367 DOI: 10.1007/s10811-010-9615-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2010] [Revised: 10/14/2010] [Accepted: 10/14/2010] [Indexed: 05/29/2023]
Abstract
In the so-called milking process of Dunaliella salina carotenoids are extracted and simultaneously produced by the culture, whilst the biomass concentration remains constant. Different theories exist about the extraction mechanisms although none have been proven yet. In this research, direct contact between dodecane and cells during the extraction process was studied microscopically and effects of direct contact were determined during in situ extraction experiments. Our results showed that water-solvent interphase contact resulted in cell death. This cell death and consequent cell rupture resulted in the release and concomitant extraction of the carotenoids. Furthermore, it has been suggested to add a small amount of dichloromethane to the biocompatible dodecane to create an organic phase with more extraction capacity. Our results showed that the addition of dichloromethane resulted in increased cell death and consequently the extraction rate increased. The improved solubility of carotenoids in an organic phase with dichloromethane did not significantly increase the extraction rate.
Collapse
Affiliation(s)
- Dorinde M. M. Kleinegris
- Bioprocess Engineering, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
| | - Marjon A. van Es
- Bioprocess Engineering, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
| | - Marcel Janssen
- Bioprocess Engineering, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
| | - Willem A. Brandenburg
- Plant Research International BV, Agrosystems research, Wageningen University and Research Centre, P.O. Box 16, 6700 AV Wageningen, The Netherlands
| | - René H. Wijffels
- Bioprocess Engineering, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
| |
Collapse
|