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Porciúncula González C, Cagnoni AJ, Mariño KV, Fontana C, Saenz-Méndez P, Irazoqui G, Giacomini C. Enzymatic synthesis of non-natural trisaccharides and galactosides; Insights of their interaction with galectins as a function of their structure. Carbohydr Res 2019; 472:1-15. [DOI: 10.1016/j.carres.2018.10.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 10/26/2018] [Accepted: 10/28/2018] [Indexed: 12/11/2022]
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Abstract
Sialic acids are cytoprotectors, mainly localized on the surface of cell membranes with multiple and outstanding cell biological functions. The history of their structural analysis, occurrence, and functions is fascinating and described in this review. Reports from different researchers on apparently similar substances from a variety of biological materials led to the identification of a 9-carbon monosaccharide, which in 1957 was designated "sialic acid." The most frequently occurring member of the sialic acid family is N-acetylneuraminic acid, followed by N-glycolylneuraminic acid and O-acetylated derivatives, and up to now over about 80 neuraminic acid derivatives have been described. They appeared first in the animal kingdom, ranging from echinoderms up to higher animals, in many microorganisms, and are also expressed in insects, but are absent in higher plants. Sialic acids are masks and ligands and play as such dual roles in biology. Their involvement in immunology and tumor biology, as well as in hereditary diseases, cannot be underestimated. N-Glycolylneuraminic acid is very special, as this sugar cannot be expressed by humans, but is a xenoantigen with pathogenetic potential. Sialidases (neuraminidases), which liberate sialic acids from cellular compounds, had been known from very early on from studies with influenza viruses. Sialyltransferases, which are responsible for the sialylation of glycans and elongation of polysialic acids, are studied because of their significance in development and, for instance, in cancer. As more information about the functions in health and disease is acquired, the use of sialic acids in the treatment of diseases is also envisaged.
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Affiliation(s)
- Roland Schauer
- Biochemisches Institut, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
| | - Johannis P Kamerling
- Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands.
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Hunter CD, Guo T, Daskhan G, Richards MR, Cairo CW. Synthetic Strategies for Modified Glycosphingolipids and Their Design as Probes. Chem Rev 2018; 118:8188-8241. [DOI: 10.1021/acs.chemrev.8b00070] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Carmanah D. Hunter
- Alberta Glycomics Centre, Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Tianlin Guo
- Alberta Glycomics Centre, Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Gour Daskhan
- Alberta Glycomics Centre, Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Michele R. Richards
- Alberta Glycomics Centre, Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Christopher W. Cairo
- Alberta Glycomics Centre, Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
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Venkateswarulu TC, Prabhakar KV, Kumar RB. Optimization of nutritional components of medium by response surface methodology for enhanced production of lactase. 3 Biotech 2017; 7:202. [PMID: 28667642 PMCID: PMC5493568 DOI: 10.1007/s13205-017-0805-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 05/12/2017] [Indexed: 10/19/2022] Open
Abstract
Lactase has excellent applications in dairy industry and commercially this enzyme is produced from bacterial sources but not in high yields. In this work, the production of lactase was improved by designing of nutrient components in fermentation medium by one factor at a time. Lactose and yeast extract were selected as preferable carbon and nitrogen sources for lactase production with tryptophan and MgSO4 showing enhanced production. Statistical analysis proved to be a useful and powerful tool in developing optimum fermentation conditions. The individual and interactive role of lactose, yeast extract, magnesium sulfate, and tryptophan concentration on lactase production was examined by central composite design. Submerged fermentation with Bacillus subtilis strain VUVD001 produced lactase activity of 63.54 U/ml in optimized medium. The activity was threefold higher in comparison to an unoptimized medium. This result confirmed that the designed medium was useful for producing higher yields of lactase.
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Affiliation(s)
- T C Venkateswarulu
- Department of Biotechnology, Vignan's Foundation for Science, Technology and Research University, Vadlamudi, Andhra Pradesh, 522213, India.
| | - K Vidya Prabhakar
- Department of Biotechnology, Vikrama Simhapuri University, Nellore, Andhra Pradesh, 524003, India
| | - R Bharath Kumar
- Department of Biotechnology, Vignan's Foundation for Science, Technology and Research University, Vadlamudi, Andhra Pradesh, 522213, India
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Yu H, Chen X. One-pot multienzyme (OPME) systems for chemoenzymatic synthesis of carbohydrates. Org Biomol Chem 2016; 14:2809-18. [PMID: 26881499 PMCID: PMC4795158 DOI: 10.1039/c6ob00058d] [Citation(s) in RCA: 111] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Glycosyltransferase-catalyzed enzymatic and chemoenzymatic syntheses are powerful approaches for the production of oligosaccharides, polysaccharides, glycoconjugates, and their derivatives. Enzymes involved in the biosynthesis of sugar nucleotide donors can be combined with glycosyltransferases in one pot for efficient production of the target glycans from simple monosaccharides and acceptors. The identification of enzymes involved in the salvage pathway of sugar nucleotide generation has greatly facilitated the development of simplified and efficient one-pot multienzyme (OPME) systems for synthesizing major glycan epitopes in mammalian glycomes. The applications of OPME methods are steadily gaining popularity mainly due to the increasing availability of wild-type and engineered enzymes. Substrate promiscuity of these enzymes and their mutants allows OPME synthesis of carbohydrates with naturally occurring post-glycosylational modifications (PGMs) and their non-natural derivatives using modified monosaccharides as precursors. The OPME systems can be applied in sequence for synthesizing complex carbohydrates. The sequence of the sequential OPME processes, the glycosyltransferase used, and the substrate specificities of the glycosyltransferases define the structures of the products. The OPME and sequential OPME strategies can be extended to diverse glycans in other glycomes when suitable enzymes with substrate promiscuity become available. This Perspective summarizes the work of the authors and collaborators on the development of glycosyltransferase-based OPME systems for carbohydrate synthesis. Future directions are also discussed.
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Affiliation(s)
- Hai Yu
- Department of Chemistry, University of California, One Shields Avenue, Davis, CA 95616, USA.
| | - Xi Chen
- Department of Chemistry, University of California, One Shields Avenue, Davis, CA 95616, USA.
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González CP, Rodríguez E, Soule S, Fraguas LF, Brena BM, Giacomini C, Irazoqui G. Enzymatic synthesis of 3-aminopropyl-1-O-β-D-galactopyranoside catalyzed byAspergillus oryzaeβ-galactosidase. BIOCATAL BIOTRANSFOR 2015. [DOI: 10.3109/10242422.2015.1095678] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Abstract
The important roles played by human milk oligosaccharides (HMOS), the third major component of human milk, in the health of breast-fed infants have been increasingly recognized, as the structures of more than 100 different HMOS have now been elucidated. Despite the recognition of the various functions of HMOS as prebiotics, antiadhesive antimicrobials, and immunomodulators, the roles and the applications of individual HMOS species are less clear. This is mainly due to the limited accessibility to large amounts of individual HMOS in their pure forms. Current advances in the development of enzymatic, chemoenzymatic, whole-cell, and living-cell systems allow for the production of a growing number of HMOS in increasing amounts. This effort will greatly facilitate the elucidation of the important roles of HMOS and allow exploration into the applications of HMOS both as individual compounds and as mixtures of defined structures with desired functions. The structures, functions, and enzyme-catalyzed synthesis of HMOS are briefly surveyed to provide a general picture about the current progress on these aspects. Future efforts should be devoted to elucidating the structures of more complex HMOS, synthesizing more complex HMOS including those with branched structures, and developing HMOS-based or HMOS-inspired prebiotics, additives, and therapeutics.
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Affiliation(s)
- Xi Chen
- Department of Chemistry, University of California, Davis, California, USA
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Zeuner B, Jers C, Mikkelsen JD, Meyer AS. Methods for improving enzymatic trans-glycosylation for synthesis of human milk oligosaccharide biomimetics. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:9615-31. [PMID: 25208138 DOI: 10.1021/jf502619p] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Recently, significant progress has been made within enzymatic synthesis of biomimetic, functional glycans, including, for example, human milk oligosaccharides. These compounds are mainly composed of N-acetylglucosamine, fucose, sialic acid, galactose, and glucose, and their controlled enzymatic synthesis is a novel field of research in advanced food ingredient chemistry, involving the use of rare enzymes, which have until now mainly been studied for their biochemical significance, not for targeted biosynthesis applications. For the enzymatic synthesis of biofunctional glycans reaction parameter optimization to promote "reverse" catalysis with glycosidases is currently preferred over the use of glycosyl transferases. Numerous methods exist for minimizing the undesirable glycosidase-catalyzed hydrolysis and for improving the trans-glycosylation yields. This review provides an overview of the approaches and data available concerning optimization of enzymatic trans-glycosylation for novel synthesis of complex bioactive carbohydrates using sialidases, α-l-fucosidases, and β-galactosidases as examples. The use of an adequately high acceptor/donor ratio, reaction time control, continuous product removal, enzyme recycling, and/or the use of cosolvents may significantly improve trans-glycosylation and biocatalytic productivity of the enzymatic reactions. Protein engineering is also a promising technique for obtaining high trans-glycosylation yields, and proof-of-concept for reversing sialidase activity to trans-sialidase action has been established. However, the protein engineering route currently requires significant research efforts in each case because the structure-function relationship of the enzymes is presently poorly understood.
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Affiliation(s)
- Birgitte Zeuner
- Center for BioProcess Engineering, Department of Chemical and Biochemical Engineering, Technical University of Denmark , Building 229, DK-2800 Kgs. Lyngby, Denmark
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Acceptor Specificity and Transfer Efficiency of a β-Glycosidase from the China White Jade Snail. Biosci Biotechnol Biochem 2014; 73:671-6. [DOI: 10.1271/bbb.80724] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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11
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Glycosynthase with Broad Substrate Specificity - an Efficient Biocatalyst for the Construction of Oligosaccharide Library. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201507] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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12
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Porciúncula González C, Castilla A, Garófalo L, Soule S, Irazoqui G, Giacomini C. Enzymatic synthesis of 2-aminoethyl β-d-galactopyranoside catalyzed by Aspergillus oryzae β-galactosidase. Carbohydr Res 2013; 368:104-10. [DOI: 10.1016/j.carres.2012.12.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Revised: 11/29/2012] [Accepted: 12/07/2012] [Indexed: 11/27/2022]
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13
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Irazoqui G, Bustamante MJ, Castilla A, Villagrán LV, Batista-Viera F, Brena BM, Giacomini C. Substrate-like inhibition of the transgalactosylation reaction catalyzed by β-galactosidase fromAspergillus oryzae. BIOCATAL BIOTRANSFOR 2013. [DOI: 10.3109/10242422.2012.762575] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Tulsiani DRP, Abou-Haila A. Biological Processes that Prepare Mammalian Spermatozoa to Interact with an Egg and Fertilize It. SCIENTIFICA 2012; 2012:607427. [PMID: 24278720 PMCID: PMC3820447 DOI: 10.6064/2012/607427] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Accepted: 05/10/2012] [Indexed: 05/15/2023]
Abstract
In the mouse and other mammals studied, including man, ejaculated spermatozoa cannot immediately fertilize an egg. They require a certain period of residence in the female genital tract to become functionally competent cells. As spermatozoa traverse through the female genital tract, they undergo multiple biochemical and physiological changes collectively referred to as capacitation. Only capacitated spermatozoa interact with the extracellular egg coat, the zona pellucida. The tight irreversible binding of the opposite gametes triggers a Ca(2+)-dependent signal transduction cascade. The net result is the fusion of the sperm plasma membrane and the underlying outer acrosomal membrane at multiple sites that causes the release of acrosomal contents at the site of sperm-egg adhesion. The hydrolytic action of the acrosomal enzymes released, along with the hyperactivated beat pattern of the bound spermatozoon, is important factor that directs the sperm to penetrate the egg coat and fertilize the egg. The sperm capacitation and the induction of the acrosomal reaction are Ca(2+)-dependent signaling events that have been of wide interest to reproductive biologists for over half a century. In this paper, we intend to discuss data from this and other laboratories that highlight the biological processes which prepare spermatozoa to interact with an egg and fertilize it.
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Affiliation(s)
- Daulat R. P. Tulsiani
- Department of Obstetrics and Gynecology, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
| | - Aïda Abou-Haila
- UFR Biomédicale, Université Paris Descartes, 75270 Paris Cedex 06, France
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R. Ketudat Cairns J, Pengthaisong S, Luang S, Sansenya S, Tankrathok A, Svasti J. Protein-carbohydrate Interactions Leading to Hydrolysis and Transglycosylation in Plant Glycoside Hydrolase Family 1 Enzymes. J Appl Glycosci (1999) 2012. [DOI: 10.5458/jag.jag.jag-2011_022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
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Suzuki K, Matsuo I, Isomura M, Ajisaka K. CHEMOENZYMATIC SYNTHESIS OF NeuAcα-(2→3)-Galβ-(1→3)-[NeuAcα-(2→6)]-GalNAcα1- O-(Z)-Serine (N-PROTECTED MUC II OLIGOSACCHARIDE–SERINE). J Carbohydr Chem 2011. [DOI: 10.1081/car-120003741] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Katsuhiko Suzuki
- a Department of Enviromental Science , Faculty of Science and Engineering , Iwaki Meisei University , 5-5-1 Iino, Chuohdai, Iwaki, Fukushima, 970-8551, Japan
| | - Ichiro Matsuo
- b Nutrition Research Institute , Meiji Milk Products Co., Ltd. , 540 Naruda, Odawara, Kanagawa, 250-0862, Japan
| | - Megumi Isomura
- b Nutrition Research Institute , Meiji Milk Products Co., Ltd. , 540 Naruda, Odawara, Kanagawa, 250-0862, Japan
| | - Katsumi Ajisaka
- b Nutrition Research Institute , Meiji Milk Products Co., Ltd. , 540 Naruda, Odawara, Kanagawa, 250-0862, Japan
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OMAGARI Y, KADOKAWA JI. Synthesis of Heteropolysaccharides Having Amylose Chains Using Phosphorylase-Catalyzed Enzymatic Polymerization. KOBUNSHI RONBUNSHU 2011. [DOI: 10.1295/koron.68.242] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Zhou G, Liu X, Su D, Li L, Xiao M, Wang PG. Large scale enzymatic synthesis of oligosaccharides and a novel purification process. Bioorg Med Chem Lett 2011; 21:311-4. [DOI: 10.1016/j.bmcl.2010.11.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2010] [Revised: 10/27/2010] [Accepted: 11/01/2010] [Indexed: 11/24/2022]
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Matsuoka K, Kaneko R, Koyama T, Ma X, Esumi Y, Nakamura T, Hatano K, Terunuma D. Synthesis of sialyllactosamine clusters using carbosilane as core scaffolds by means of chemical and enzymatic approaches. Bioorg Med Chem Lett 2010; 20:4906-10. [PMID: 20620057 DOI: 10.1016/j.bmcl.2010.06.066] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2010] [Revised: 06/09/2010] [Accepted: 06/11/2010] [Indexed: 10/19/2022]
Abstract
An efficient synthesis of sialyllactosamine (SiaLacNAc) clusters using carbosilanes as core scaffolds has been accomplished by means of chemical and enzymatic approaches. N-Acetyl-D-glucosamine (GlcNAc) clusters having O-glycosidic linkage or S-glycosidic linkage were chemically synthesized from known intermediates in high yields. The GlcNAc clusters were first used as substrates for beta1,4 galactosyl transferase using UDP-galactose (UDP-Gal) as a sugar source to provide corresponding N-acetyllactosamine clusters. Further sugar elongation of the LacNAc clusters was demonstrated using alpha2,3 sialyl transferase and CMP-neuraminic acid (CMP-NANA) to yield the corresponding SiaLacNAc clusters.
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Affiliation(s)
- Koji Matsuoka
- Area for Molecular Function, Division of Material Science, Graduate School of Science and Engineering, Saitama University, Sakura, Saitama 338-8570, Japan.
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Canedo M, Jimenez-Estrada M, Cassani J, López-munguía A. Production of Maltosylfructose (Erlose) with Levansucrase fromBacillus Subtilis. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.3109/10242429909015223] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Moracci M, Ciaramella M, Nucci R, Pearl LH, Sanderson I, Trincone A, Rossi M. Thermostable β-Glycosidase fromSulfolobus Solfataricus. ACTA ACUST UNITED AC 2009. [DOI: 10.3109/10242429409034380] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Marco Moracci
- Institute of Protein Biochemistry and Enzymology, Via Marconi 10, 80125, Naples, Italy
| | - Maria Ciaramella
- Institute of Protein Biochemistry and Enzymology, Via Marconi 10, 80125, Naples, Italy
| | - Roberto Nucci
- Institute of Protein Biochemistry and Enzymology, Via Marconi 10, 80125, Naples, Italy
| | - Laurence H. Pearl
- University College, Department of Biochemistry and Molecular Biology, Gower Street, London, WC1E 6BT, UK
| | - Ian Sanderson
- University College, Department of Biochemistry and Molecular Biology, Gower Street, London, WC1E 6BT, UK
| | - Antonio Trincone
- Istituto per la Chimica di Molecole di Interesse Biologico, Via Toiano 6, 80072, Arco Felice, Naples, Italy
| | - MosÉ Rossi
- Institute of Protein Biochemistry and Enzymology, Via Marconi 10, 80125, Naples, Italy
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Corrales G, Fernández-Mayoralas A, García-Junceda E, Rodríguez Y. A New Strategy for Liquid-Phase Synthesis of Disaccharides Based on the Use of Glycosidases. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.3109/10242420009015250] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Rentmeister A, Hoh C, Weidner S, Dräger G, Elling L, Liese A, Wandrey C. Kinetic Examination and Simulation of GDP-β-l-fucose Synthetase Reaction Using NADPH or NADH. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.1080/10242420410001666362] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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24
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Huneke FU, Nucci R, Cowan D. Effect of Water Miscible Organic Solvents on Kinetics of a Thermostable β-Glycosidase. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.3109/10242429909015229] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Trincone A, Improta R, Gambacorta A. Enzymatic Synthesis of Polyol- and Masked Polyol- Glycosides using β-Glycosidase ofSulfolobus Solfataricus. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.3109/10242429508998153] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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26
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A response surface methodological study on prediction of glucosylation yields of thiamin using immobilized β-glucosidase. Process Biochem 2009. [DOI: 10.1016/j.procbio.2008.10.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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27
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Mukherjee C, Misra AK. Synthesis of a unique trisaccharide having an acetal linkage between open-chain and cyclic sugar found in the cell wall of Proteus. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.tetasy.2008.12.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Moretti R, Thorson JS. A comparison of sugar indicators enables a universal high-throughput sugar-1-phosphate nucleotidyltransferase assay. Anal Biochem 2008; 377:251-8. [PMID: 18387352 PMCID: PMC2442561 DOI: 10.1016/j.ab.2008.03.018] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2008] [Revised: 03/11/2008] [Accepted: 03/12/2008] [Indexed: 10/22/2022]
Abstract
A systematic comparison of six sugar indicators for their sensitivity, specificity, cross-reactivity, and suitability in the context of crude lysates revealed para-hydroxybenzoic acid hydrazide (pHBH) to be best suited for application in a plate-based phosphatase-assisted universal sugar-1-phosphate nucleotidyltransferase assay. The addition of a general phosphatase to nucleotidyltransferase reaction aliquots enabled the conversion of remaining sugar-1-phosphate to free sugar, the concentration of which could be rapidly assessed via the pHBH assay. The assay was validated using the model glucose-1-phosphate thymidylyltransferase from Salmonella enterica (RmlA) and compared favorably with a previously reported HPLC assay. This coupled discontinuous assay is quantitative, high throughput, and robust; relies only on commercially available enzymes and reagents; does not require chromatography, specialized detectors (e.g., mass or evaporative light scattering detectors), or radioisotopes; and is capable of detecting less than 5 nmol of sugar-1-phosphate. It is anticipated that this high-throughput assay system will greatly facilitate nucleotidyltransferase mechanistic and directed evolution/engineering studies.
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Affiliation(s)
- Rocco Moretti
- Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706
| | - Jon S. Thorson
- Laboratory for Biosynthetic Chemistry, Pharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin, Madison, Wisconsin 53705
- University of Wisconsin National Cooperative Drug Discovery Group, School of Pharmacy, University of Wisconsin, Madison, Wisconsin 53705
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Brockhausen I, Larsson EA, Hindsgaul O. A very simple synthesis of GlcNAc-α-pyrophosphoryl-decanol: A substrate for the assay of a bacterial galactosyltransferase. Bioorg Med Chem Lett 2008; 18:804-7. [DOI: 10.1016/j.bmcl.2007.11.031] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2007] [Revised: 11/07/2007] [Accepted: 11/09/2007] [Indexed: 11/17/2022]
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Rabbani S, Compostella F, Franchini L, Wagner B, Panza L, Ernst B. Synthetic Potential of Fucosyltransferase III for the Synthesis of Fluorescent‐labeled Milk Oligosaccharides. J Carbohydr Chem 2007. [DOI: 10.1080/07328300500341965] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Said Rabbani
- a Institute of Molecular Pharmacy, Pharmacenter of the University of Basel , Basel , Switzerland
| | - Federica Compostella
- b Dipartimento di Chimica, Biochimica e Biotecnologie per la Medicina , Università di Milano , Milano , Italy
| | - Laura Franchini
- b Dipartimento di Chimica, Biochimica e Biotecnologie per la Medicina , Università di Milano , Milano , Italy
| | - Beatrice Wagner
- a Institute of Molecular Pharmacy, Pharmacenter of the University of Basel , Basel , Switzerland
| | - Luigi Panza
- c Dipartimento di Scienze Chimiche, Alimentari, Farmaceutiche e Farmacologiche , Università del Piemonte Orientale , Novara , Italy
| | - Beat Ernst
- a Institute of Molecular Pharmacy, Pharmacenter of the University of Basel , Basel , Switzerland
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31
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Streicher H, Reiner M, Schmidt RR. Synthesis and Reactions ofC-Hetaryl Substituted Ketoses. J Carbohydr Chem 2006. [DOI: 10.1080/07328309708006530] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Huang KT, Wu BC, Lin CC, Luo SC, Chen C, Wong CH, Lin CC. Multi-enzyme one-pot strategy for the synthesis of sialyl Lewis X-containing PSGL-1 glycopeptide. Carbohydr Res 2006; 341:2151-5. [PMID: 16762328 DOI: 10.1016/j.carres.2006.04.047] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2005] [Revised: 04/10/2006] [Accepted: 04/27/2006] [Indexed: 11/30/2022]
Abstract
An enzymatic one-pot three-step glycosylation strategy was developed for the synthesis of sLex moiety of truncated PSGL-1 glycopeptide with and without sulfation. The method provided an efficient way to afford complex glycopeptides in a semi-preparative scale without further complicated and time-consuming purification process in each glycosylation step.
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Affiliation(s)
- Kuo-Ting Huang
- Institute of Chemistry and Genomic Research Center, Academia Sinica, Taipei 115, Taiwan
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33
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Tulsiani DRP. Glycan-modifying enzymes in luminal fluid of the mammalian epididymis: an overview of their potential role in sperm maturation. Mol Cell Endocrinol 2006; 250:58-65. [PMID: 16413674 DOI: 10.1016/j.mce.2005.12.025] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Testicular spermatozoa and those present within the proximal regions of the epididymis are unable to bind to the zona pellucida, the extracellular coat that surrounds the oocyte, and fertilize the egg. They acquire progressive motility and fertilizing ability during passage through the epididymis. Mammalian spermatozoa undergo biochemical and physiological changes during epididymal transit that are collectively termed epididymal maturation. The process involves several intracellular and extracellular changes in the spermatozoon, including remodeling of the sperm plasma membrane and modifications of glycan moieties of the sperm surface glycoconjugates. Two sets of glycan-modifying enzymes, namely glycohydrolases that cleave sugar residues and glycosyltransferases that add sugar residues to the existing glycoconjugates, are present in the epididymal luminal fluid that surrounds spermatozoa. Thus, it is reasonable to expect that glycan chains present on the sperm surface will interact with these glycan-modifying enzymes in the epididymal fluid. In this article, I have attempted to summarize and present an overview on the potential role of these glycan-modifying enzymes in sperm maturation.
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Affiliation(s)
- Daulat R P Tulsiani
- Department of Obstetrics & Gynecology, Vanderbilt University School of Medicine, Nashville, TN 37232-2633, USA.
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34
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Bae J, Kim KH, Kim D, Choi Y, Kim JS, Koh S, Hong SI, Lee DS. A practical enzymatic synthesis of UDP sugars and NDP glucoses. Chembiochem 2006; 6:1963-6. [PMID: 16206230 DOI: 10.1002/cbic.200500183] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Jungdon Bae
- Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong, Daejeon 305-333, Korea
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35
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Streicher H, Geyer A, Schmidt RR. C-Disaccharides of Ketoses. Chemistry 2006; 2:502-510. [DOI: 10.1002/chem.19960020508] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/1995] [Indexed: 11/08/2022]
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36
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Kang SK, Cho KK, Ahn JK, Kang SH, Lee SH, Lee HG, Choi YJ. Cloning, expression, and enzyme characterization of thermostable β-glycosidase from Thermus flavus AT-62. Enzyme Microb Technol 2005. [DOI: 10.1016/j.enzmictec.2004.07.026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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37
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Hsu CA, Yu RC, Chou CC. Purification and characterization of a sodium-stimulated β-galactosidase from Bifidobacterium longum CCRC 15708. World J Microbiol Biotechnol 2005. [DOI: 10.1007/s11274-005-9041-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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38
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Madhusudan SK, Misra AK. Synthesis of a New Type of Glycosidic Linkage: Acetal-Linked Disaccharides and Trisaccharides of Acyclic and Cyclic Sugars. European J Org Chem 2005. [DOI: 10.1002/ejoc.200500081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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39
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Kang SK, Cho KK, Ahn JK, Bok JD, Kang SH, Woo JH, Lee HG, You SK, Choi YJ. Three forms of thermostable lactose-hydrolase from Thermus sp. IB-21: cloning, expression, and enzyme characterization. J Biotechnol 2005; 116:337-46. [PMID: 15748760 DOI: 10.1016/j.jbiotec.2004.07.019] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2004] [Revised: 07/16/2004] [Accepted: 07/30/2004] [Indexed: 10/25/2022]
Abstract
Three thermostable lactose-hydrolases, namely, two beta-glycosidases (bglA and bglB) and one beta-galactosidase (bgaA) genes were cloned from the genomic library of Thermus sp. IB-21. The bglA, bglB, and bgaA consisted of 1311 bp (436 amino acid residues), 1296 bp (431 aa), and 1938 bp (645 aa) of nucleotides with predicted molecular masses of 49,066, 48,679, and 72,714 Da, respectively. These enzymes were overexpressed in Escherichia coli BL21(DE3) using pET21b(+) vector system. The recombinant enzymes were purified to homogeneity by a heat precipitation (70 degrees C, 40 min) and a Ni2+-affinity chromatography. The molecular masses of the purified enzymes estimated by SDS-PAGE agreed with their predicted values. All the purified enzymes showed their optimal pH at around 5.0-6.0. In contrast, the temperature profiles for activity and thermostability patterns were different for each enzyme. BglB beta-glycosidase displayed the best lactose hydrolysis activity of the three enzymes without substrate inhibition up to 200 mM lactose at 70 degrees C and pH 7.0. The specific activities (U/mg) of BglA, BglB, and BgaA on 138 mM lactose at 70 degrees C and pH 7.0 were 36.8, 160.3, and 8.5, respectively.
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Affiliation(s)
- Sang Kee Kang
- School of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea
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40
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Redgwell RJ, Fischer M. Dietary fiber as a versatile food component: An industrial perspective. Mol Nutr Food Res 2005; 49:521-35. [PMID: 15926144 DOI: 10.1002/mnfr.200500028] [Citation(s) in RCA: 93] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The continued emphasis on the importance of dietary fibers to the Western diet and the need for products with a lower calorific content is pressuring food companies to allocate more resources to the development of fiber-enriched products. The challenge to the industry is to accomplish this goal without sacrificing the organoleptic appeal of some of their core offerings. As future research details specific nutritional benefits of individual components of dietary fiber, food companies will need flexible alternatives in order to validate new 'functional' food claims and to respond rapidly to emerging trends in fiber-enriched products. These objectives will be achieved by understanding the physicochemical basis for the biotechnical functionality of fibers and by developing, and making available fibers which provide a broad spectrum of bioactive and texture modulating properties.
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41
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Athanasopoulos VI, Niranjan K, Rastall RA. The production, purification and characterisation of two novel α-d-mannosidases from Aspergillus phoenicis. Carbohydr Res 2005; 340:609-17. [PMID: 15721331 DOI: 10.1016/j.carres.2005.01.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2004] [Revised: 11/30/2004] [Accepted: 01/03/2005] [Indexed: 11/24/2022]
Abstract
1,6-alpha-D-Mannosidase from Aspergillus phoenicis was purified by anion-exchange chromatography, chromatofocussing and size-exclusion chromatography. The apparent molecular weight was 74 kDa by SDS-PAGE and 81 kDa by native-PAGE. The isoelectric point was 4.6. 1,6-alpha-D-Mannosidase had a temperature optimum of 60 degrees C, a pH optimum of 4.0-4.5, a K(m) of 14 mM with alpha-D-Manp-(1-->6)-D-Manp as substrate. It was strongly inhibited by Mn(2+) and did not need Ca(2+) or any other metal cofactor of those tested. The enzyme cleaves specifically (1-->6)-linked mannobiose and has no activity towards any other linkages, p-nitrophenyl-alpha-D-mannopyranoside or baker's yeast mannan. 1,3(1,6)-alpha-D-Mannosidase from A. phoenicis was purified by anion-exchange chromatography, chromatofocussing and size-exclusion chromatography. The apparent molecular weight was 97 kDa by SDS-PAGE and 110 kDa by native-PAGE. The 1,3(1,6)-alpha-D-mannosidase enzyme existed as two charge isomers or isoforms. The isoelectric points of these were 4.3 and 4.8 by isoelectric focussing. It cleaves alpha-D-Manp-(1-->3)-D-Manp 10 times faster than alpha-D-Manp-(1-->6)-D-Manp, has very low activity towards p-nitrophenyl-alpha-D-mannopyranoside and baker's yeast mannan, and no activity towards alpha-D-Manp-(1-->2)-D-Manp. The activity towards (1-->3)-linked mannobiose is strongly activated by 1mM Ca(2+) and inhibited by 10mM EDTA, while (1-->6)-activity is unaffected, indicating that the two activities may be associated with different polypeptides. It is also possible that one polypeptide may have two active sites catalysing distinct activities.
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42
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Salo H, Sievi E, Suntio T, Mecklin M, Mattila P, Renkonen R, Makarow M. Co-expression of two mammalian glycosyltransferases in the yeast cell wall allows synthesis of sLex. FEMS Yeast Res 2005; 5:341-50. [PMID: 15691739 DOI: 10.1016/j.femsyr.2004.11.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2004] [Revised: 10/08/2004] [Accepted: 11/24/2004] [Indexed: 11/20/2022] Open
Abstract
Interactions between selectins and their oligosaccharide-decorated counter-receptors play an important role in the initiation of leukocyte extravasation in inflammation. L-selectin ligands are O-glycosylated with sulphated sialyl Lewis X epitopes (sulpho-sLex). Synthetic sLex oligosaccharides have been shown to inhibit adhesion of lymphocytes to endothelium at sites of inflammation. Thus, they could be used to prevent undesirable inflammatory reactions such as rejection of organ transplants. In vitro synthesis of sLex glycans is dependent on the availability of recombinant glycosyltransferases. Here we expressed the catalytic domain of human alpha-1,3-fucosyltransferase VII in the yeasts Saccharomyces cerevisiae and Pichia pastoris. To promote proper folding and secretion competence of this catalytic domain in yeast, it was fused to the Hsp150 delta carrier, which is an N-terminal fragment of a secretory glycoprotein of S. cerevisiae. In both yeasts, the catalytic domain acquired an active conformation and the fusion protein was externalised, but remained mostly attached to the cell wall in a non-covalent fashion. Incubation of intact S. cerevisiae or P. pastoris cells with GDP-[14C]fucose and sialyl-alpha-2,3-N-acetyllactosamine resulted in synthesis of radioactive sLex, which diffused to the medium. Finally, we constructed an S. cerevisiae strain co-expressing the catalytic domains of alpha-2,3-sialyltransferase and alpha-1,3-fucosyltransferase VII, which were targeted to the cell wall. When these cells were provided with N-acetyllactosamine, CMP-sialic acid and GDP-[14C]fucose, radioactive sLex was produced to the medium. These data imply that yeast cells can provide a self-perpetuating source of fucosyltransferase activity immobilized in the cell wall, useful for the in vitro synthesis of sLex.
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Affiliation(s)
- Hanna Salo
- Program in Cellular Biotechnology, Institute of Biotechnology, University of Helsinki, Viikinkaari 9, 00710 Helsinki, Finland.
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43
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Murata T, Honda H, Hattori T, Usui T. Enzymatic synthesis of poly-N-acetyllactosamines as potential substrates for endo-β-galactosidase-catalyzed hydrolytic and transglycosylation reactions. Biochim Biophys Acta Gen Subj 2005; 1722:60-8. [PMID: 15716127 DOI: 10.1016/j.bbagen.2004.11.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2004] [Revised: 11/15/2004] [Accepted: 11/17/2004] [Indexed: 10/26/2022]
Abstract
Enzymatic synthesis of GlcNAc-terminated poly-N-acetyllactosamine beta-glycosides GlcNAcbeta1,3(Galbeta1,4GlcNAcbeta1,3)(n)Galbeta1,4GlcNAcbeta-pNP (n=1-4) was demonstrated using a transglycosylation reaction of Escherichia freundii endo-beta-galactosidase. The enzyme catalyzed a transglycosylation reaction on GlcNAcbeta1,3Galbeta1,4GlcNAcbeta-pNP (1), which served both as a donor and an acceptor, and converted 1 into p-nitrophenyl beta-glycosides GlcNAcbeta1,3(Galbeta1,4GlcNAcbeta1,3)(1)Galbeta1,4GlcNAcbeta-pNP (2), GlcNAcbeta1,3(Galbeta1,4GlcNAcbeta1,3)(2)Galbeta1,4GlcNAcbeta-pNP (3), GlcNAcbeta1,3(Galbeta1,4GlcNAcbeta1,3)(3)Galbeta1,4GlcNAcbeta-pNP (4) and GlcNAcbeta1,3(Galbeta1,4GlcNAcbeta1,3)(4)Galbeta1,4GlcNAcbeta-pNP (5). When 2 was used as an initial substrate, it led to the preferential synthesis of nonasaccharide beta-glycoside 4 to heptasaccharide beta-glycoside 3. This suggests that 4 is directly synthesized by transferring the tetrasaccharide unit GlcNAcbeta1,3Galbeta1,4GlcNAcbeta1,3Gal to nonreducing end GlcNAc residue of 2 itself. The efficiency of production of poly-N-acetyllactosamines by E. freundii endo-beta-galactosidase was significantly enhanced by the addition of BSA and by a low-temperature condition. Resulting 2 and 3 were shown to be useful for studying endo-beta-galactosidase-catalyzed hydrolytic and transglycosylation reactions.
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Affiliation(s)
- Takeomi Murata
- Department of Applied Biological Chemistry, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan.
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44
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Hinz SWA, van den Brock LAM, Beldman G, Vincken JP, Voragen AGJ. β-Galactosidase from Bifidobacterium adolescentis DSM20083 prefers β(1,4)-galactosides over lactose. Appl Microbiol Biotechnol 2004; 66:276-84. [PMID: 15480628 DOI: 10.1007/s00253-004-1745-9] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Abstract A beta-galactosidase gene (beta-Gal II) from Bifidobacterium adolescentis DSM 20083 was cloned into a pbluescript SK (-) vector and expressed in Escherichia coli. The recombinant enzyme was purified from the cell extract by anion-exchange and size-exclusion chromatography. beta-Gal II had a native molecular mass of 235 kDa and the subunits had a molecular mass of 81 kDa, indicating that beta-Gal II occurs as a trimer. The enzyme was classified as belonging to glycosyl hydrolase family 42. The optimal pH was 6.0 and the optimal temperature was 50 degrees C, usingp-nitrophenyl-(beta-D-galactopyranoside as a substrate. The Km and Vmax for Gal(beta1-4)Gal were 60 mM and 1129 U/mg, respectively. The recombinant beta-Gal II was highly active towards Gal(beta1-4)Gal and Gal (beta1-4)Gal-containing oligosaccharides; only low activity was observed towards Gal(beta1-3)Gal, lactose, and Gal (beta1-3)GalOMe. No activity was found towards Gal(beta1-6)Gal, Gal(beta -4)Man, Gal(alpha1-4)Gal, Gal(alpha1-3)Gal(beta1-4)Gal, cellobiose, maltose and sucrose. beta-Gal II was inhibited at high substrate concentrations (100 mg/ml) and no transglycosylation activity was found. At lower substrate concentrations (10 mg/ml) only low transglycosylation activity was found; the Gal/[Gal(beta1-4)]2Gal peak area ratio was 9:1.
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Affiliation(s)
- Sandra W A Hinz
- Laboratory of Food Chemistry, Wageningen University, P.O. Box 8129, 6700 EV Wageningen, The Netherlands
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45
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Abe H, Ohba M, Shimma YI, Jigami Y. Yeast cells harboring human alpha-1,3-fucosyltransferase at the cell surface engineered using Pir, a cell wall-anchored protein. FEMS Yeast Res 2004; 4:417-25. [PMID: 14734022 DOI: 10.1016/s1567-1356(03)00193-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Abstract
Human alpha-1,3-fucosyltansferase (FucT) encoded by the FUT6 gene was displayed at the cell surface of yeast cells engineered using the yeast cell wall protein Pir1 or Pir2, and the FucT activity was detected at the surface of cells producing the Pir1-HA-FUT6 or Pir2-FLAG-FUT6 fusion proteins. To obtain higher activity, we engineered the host yeast cells in which endogenous PIR genes of the PIR1-4 gene family were disrupted. Among the disruptants, the pir1Delta pir2Delta pir3Delta strain with the PIR1-HA-FUT6 fusion gene showed the highest FucT activity, which was about three-fold higher than that of the wild-type strain. Furthermore, the co-expression of both the Pir1-HA-FUT6 and the Pir2-FLAG-FUT6 fusions showed an approximately 1.5-fold higher activity than that in the cell wall displaying Pir1-HA-FUT6 alone. The present method was thus effective for producing yeast cells that can easily synthesize various oligosaccharides, such as Le(x) and sLe(x), using Pir-glycosyltransferase fusions in combination with the deletion of endogenous PIR genes.
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Affiliation(s)
- Hiroko Abe
- Research Center for Glycoscience (RCG), National Institute of Advanced Industrial Science and Technology (AIST), AIST Central 6, Tsukuba, Ibaraki 305-8566, Japan
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46
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Yasutake N, Totani K, Harada Y, Haraguchi S, Murata T, Usui T. Novel Synthesis of Lactosyl .BETA.-Glycosides and Analogs through Cellulase-mediated Transglycosylation or Condensation Reaction. J Appl Glycosci (1999) 2004. [DOI: 10.5458/jag.51.141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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47
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Murata T, Hattori T, Amarume S, Koichi A, Usui T. Kinetic studies on endo-beta-galactosidase by a novel colorimetric assay and synthesis of N-acetyllactosamine-repeating oligosaccharide beta-glycosides using its transglycosylation activity. EUROPEAN JOURNAL OF BIOCHEMISTRY 2003; 270:3709-19. [PMID: 12950254 DOI: 10.1046/j.1432-1033.2003.03757.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Novel chromogenic substrates for endo-beta-galactosidase were designed on the basis of the structural features of keratan sulfate. Galbeta1-4GlcNAcbeta1-3Galbeta1-4GlcNAcbeta-pNP (2), which consists of two repeating units of N-acetyllactosamine, was synthesized enzymatically by consecutive additions of GlcNAc and Gal residues to p-nitrophenyl beta-N-acetyllactosaminide. In a similar manner, GlcNAcbeta1-3Galbeta1-4GlcNAcbeta-pNP (1), GlcNAcbeta1-3Galbeta1-4Glcbeta-pNP (3), Galbeta1-4GlcNAcbeta1-3Galbeta1-4Glcbeta-pNP (4), Galbeta1-3GlcNAcbeta1-3Galbeta1-4Glcbeta-pNP (5), and Galbeta1-6GlcNAcbeta1-3Galbeta1-4Glcbeta-pNP (6) were synthesized as analogues of 2. Endo-beta-galactosidases released GlcNAcbeta-pNP or Glcbeta-pNP in an endo-manner from each substrate. A colorimetric assay for endo-beta-galactosidase was developed using the synthetic substrates on the basis of the determination of p-nitrophenol liberated from GlcNAcbeta-pNP or Glcbeta-pNP formed by the enzyme through a coupled reaction involving beta-N-acetylhexosaminidase (beta-NAHase) or beta-d-glucosidase. Kinetic analysis by this method showed that the value of Vmax/Km of 2 for Escherichia freundii endo-beta-galactosidase was 1.7-times higher than that for keratan sulfate, indicating that 2 is very suitable as a sensitive substrate for analytical use in an endo-beta-galactosidase assay. Compound 1 still acts as a fairly good substrate despite the absence of a Gal group in the terminal position. In addition, the hydrolytic action of the enzyme toward 2 was shown to be remarkably promoted compared to that of 4 by the presence of a 2-acetamide group adjacent to the p-nitrophenyl group. This was the same in the case of a comparison of 1 and 3. Furthermore, the enzyme also catalysed a transglycosylation on 1 and converted it into GlcNAcbeta1-3Galbeta1-4GlcNAcbeta1-3Galbeta1-4GlcNAcbeta-pNP (9) and GlcNAcbeta1-3Galbeta1-4GlcNAcbeta1-3Galbeta1-4GlcNAcbeta1-3Galbeta1-4GlcNAcbeta-pNP (10) as the major products, which have N-acetyllactosamine repeating units.
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Affiliation(s)
- Takeomi Murata
- Department of Applied Biological Chemistry, Shizuoka University, Japan.
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48
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Prapulla SG, Subhaprada V, Karanth NG. Microbial production of oligosaccharides: a review. ADVANCES IN APPLIED MICROBIOLOGY 2003; 47:299-343. [PMID: 12876801 DOI: 10.1016/s0065-2164(00)47008-5] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- S G Prapulla
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570013, India
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49
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Wang X, He X, Yang S, An X, Chang W, Liang D. Structural basis for thermostability of beta-glycosidase from the thermophilic eubacterium Thermus nonproteolyticus HG102. J Bacteriol 2003; 185:4248-55. [PMID: 12837801 PMCID: PMC164863 DOI: 10.1128/jb.185.14.4248-4255.2003] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The three-dimensional structure of a thermostable beta-glycosidase (Gly(Tn)) from the thermophilic eubacterium Thermus nonproteolyticus HG102 was determined at a resolution of 2.4 A. The core of the structure adopts the (betaalpha)(8) barrel fold. The sequence alignments and the positions of the two Glu residues in the active center indicate that Gly(Tn) belongs to the glycosyl hydrolases of retaining family 1. We have analyzed the structural features of Gly(Tn) related to the thermostability and compared its structure with those of other mesophilic glycosidases from plants, eubacteria, and hyperthermophilic enzymes from archaea. Several possible features contributing to the thermostability of Gly(Tn) were elucidated.
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Affiliation(s)
- Xinquan Wang
- National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China
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50
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Svasti J, Phongsak T, Sarnthima R. Transglucosylation of tertiary alcohols using cassava beta-glucosidase. Biochem Biophys Res Commun 2003; 305:470-5. [PMID: 12763016 DOI: 10.1016/s0006-291x(03)00793-9] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
We have compared the ability of beta-glucosidases from cassava, Thai rosewood, and almond to synthesize alkyl glucosides by transglucosylating alkyl alcohols of chain length C(1)-C(8). Cassava linamarase shows greater ability to transfer glucose from p-nitrophenyl-beta-glucoside to secondary alcohol acceptors than other beta-glucosidases, and is unique in being able to synthesize C(4), C(5), and C(6) tertiary alkyl beta-glucosides with high yields of 94%, 82%, and 56%, respectively. Yields of alkyl glucosides could be optimized by selecting appropriate enzyme concentrations and incubation times. Cassava linamarase required pNP-glycosides as donors and could not use mono- or di-saccharides as sugar donors in alkyl glucoside synthesis.
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Affiliation(s)
- Jisnuson Svasti
- Center for Excellence in Protein Structure and Function, Department of Biochemistry, Faculty of Science, Mahidol University, Rama VI Road, Bangkok 10400, Thailand.
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