Exploring the microbial mechanisms of organic matter transformation during pig manure composting amended with bean dregs and biochar

Analysis of microbial community potentially involved in carbon monoxide production in compost and its functional assessment: Utilized pathways, enzymes, and genes

Carbon monoxide (CO) is a valuable compound widely used in industry, and its biological production aligns with the bioeconomy principles. This study introduces a novel perspective by exploring biowaste composting as a potential source of CO production. Using 16S rDNA sequencing, microbial communities within two zones of a compost pile, with low (CO/L, 119 ppm) and high CO concentration (CO/H, 785 ppm), were characterized. The metabolic potential of microbial communities was investigated using PICRUSt2, an advanced tool for functional analysis. Results revealed higher alpha diversity in CO/H samples compared to CO/L, likely influenced by the lower temperature at the CO/H sampling site (50 °C vs. 62 °C in CO/L). Importantly, in the PCoA plots, samples clustered together depending on the sampling site. The microbial community composition was dominated by Bacilli (up to 98.8 % and 55.4 % of CO/L and CO/H samples, respectively). One of the key results was the detection of the Wood-Ljungdahl pathway, a metabolic route for CO production, in nearly all compost samples. This pathway was more abundant in CO/H samples (0.011-0.027 %) compared to CO/L samples (0.000-0.002 %). Moreover, 7 enzymes and 7 genes responsible for CO production and metabolism were detected in compost samples, suggesting that the observed CO formation is likely of biotic origin. The study for the first time underscored the potential of composting as a sustainable method for CO generation and validated PICRUSt2 as a reliable tool for uncovering biotic CO production mechanisms, offering valuable preliminary insights into the functional capabilities of microbial communities.

Substrate preference triggers metabolic patterns of indigenous microbiome during initial composting stages

Composting organic waste is a sustainable recycling method in agricultural systems, yet the microbial preferences for different substrates and their influence on composting efficiency remain underexplored. Here, 210 datasets of published 16S ribosomal DNA amplicon sequences from straw and manure composts worldwide were analyzed, and a database of 278 bacterial isolates was compiled. Substrate-driven microbiome variations were most prominent during the initial composting stages. Indigenous synthetic communities exhibit substrate-specific adaptations, increasing compost temperatures by 2 %-10 %, microbial abundance by 44 %-233 %, and microbial activity by 26 %-60 %. Key dissolved substrates, such as choline and succinic acid in straw compost, and phloretin and uric acid in manure compost, drive these microbial preferences. These findings highlight how substrate-specific microbiomes can be engineered to enhance microbial activity, accelerate temperature rise, and extend the thermophilic phase, providing a targeted framework to improve composting efficiency and tailor strategies to different organic waste types.

Comparison of the Bacterial and Fungal Communities and Metabolic Functions of Cottonseed Hull Waste Compost Associated with High and Low Yields of Straw Mushroom Volvariella volvacea

Volvariella volvacea was grown on cottonseed hull waste compost and divided into high-yield (HBE) and low-yield (LBE) conditions. Gene sequencing was used to examine bacterial and fungal populations during cottonseed husk waste composting. At the end of fermentation, the dominant bacterial genera in the HBE compost were Chelatococcus and Thermobacillus, while Symbiobacterium and Acinetobacter were more abundant in the LBE compost. Ascomycota and Basidiomycota dominated all the composting phases. The Ascomycota genera Colletotrichum, Pichia, Mycothermus, and Thermomyces dominated in phase II of HBE composting. The LBE compost had higher abundances of the Basidiomycota genera Cystofilobasidium and Cryptococcus than the HBE compost. The predicted pathotroph and saprotroph-symbiotroph abundances were more positively linked to HBE composting phase II than to LBE composting. High-biological-efficiency microbial communities are characterized by high pH, carbon, and nitrogen levels. Changes in physiochemical traits, microbial diversity, and metabolism affect the V. volvacea yield.

Microbial fuel cell-assisted composting yields higher performance on metals passivation, antibiotics degradation, and resistance genes removal

Little scientific evidence on metal passivation, antibiotic degradation and resistance genes removal, is available under autogenetic electrochemical reactions during composting process. This study established microbial fuel cell (MFC)-assisted composting procedure to ascertain the removal performance and detoxification mechanisms involving metals, antibiotics and their resistance genes. Compared to control treatment, the bioavailability of zinc (Zn) and copper (Cu) in MFC-assisted treatment decreased by 7.8% and 26.9%, while the content of tetracycline (TCL) and oxytetracycline (OCL) reduced by 100% and 89%, respectively. Organics mineralization and humification were responsible for 80% and 70% of the variations in metal passivation and antibiotic degradation during composting process. A decrease of 54% was found for tetW gene, while copA gene increased by 42% in MFC-assisted composting treatment. These findings highlight the detoxification mechanisms underlying metal passivation and antibiotic degradation during composting process, and potentially offer valuable insights for environmental source protection and agricultural sustainable development.

Feedstock optimization with low carbon to nitrogen ratio during algal sludge aerobic composting: Quality and gaseous emissions

This study investigated compost quality and gaseous emissions during the algal sludge composting. The experiment explored the feasibility of low initial carbon to nitrogen (C/N) ratio composting by using different volume ratios of algal sludge and spent mushroom substrates (1:1, 1:2, 1:3, and 1:4, corresponding to C/N ratios of 9.5, 12.3, 14.6, 16.0, respectively). The results showed that increasing the proportion of algal sludge in the initial material led to a longer maturation time and higher nitrogen losses but also enhanced the mineralization of organic nitrogen (converted to NH4+ and NO3-) and reduced carbon losses. The addition of carbon-rich bulking agents within a certain range improved the diversity and interactions of bacterial communities during algal sludge composting. In conclusion, considering the nitrogen and carbon lost, retained, and made available across the four treatments, treatment 3 (C/N = 14.6) appears to be the optimal choice for low C/N composting.

Effects of selenate on greenhouse gas release and microbial community variations during swine manure composting

Co-composting of livestock manure and selenate is an effective means to produce selenium-rich organic fertilizer. However the effect of selenate on greenhouse gas emission during composting is still unknown. To probe the influences of selenate on greenhouse gas and microbial community changes during swine manure composting. Various dose of selenate were added to the fresh swine manure and wheat straw for 80 days aerobic composting, sequentially labeled as T1 (control) to T6 (0, 1, 2, 3, 4 and 5 mg kg-1). Results indicated that selenate generally increased the nitrous oxide (N2O) and ammonia (NH3) emissions while presented varying impacts on methane (CH4) emissions. Compared with the control, adding 2 and 5 mg kg-1 selenate reduced the CH4 emission by 39.60% and 13.75%, respectively, while other concentrations presented opposite results. Meanwhile, adding 2 mg kg-1 selenate could reduce the global warming potential and improve the compost maturity. According to the microbial results, adding 2 mg kg-1 selenate enhanced the richness and variety of the microbes and might influence Proteobacteria, Chloroflexi, Actinobacteria and Methylococcaceae_unclassified to decrease the global warming potential.

Polyethylene microplastics distinctly affect soil microbial community and carbon and nitrogen cycling during plant litter decomposition

Plant litter is an important input source of carbon and nitrogen in soil. While microplastics (MPs) and plant litter are ubiquitously present in soil, their combined impact on soil biogeochemical processes remains poorly understood. To address this gap, we examined the soil changes resulting from the coexistence of plant litter (Alfalfa) and polyethylene microplastics (PE). The soil changes included physicochemical properties, composition of soil dissolved organic matter, and structure of the soil microbial community. The results showed that the addition of polyethylene (PE) inhibited the degradation of humus-like substances and decreased the quantity of humic acid-like compounds in soil dissolved organic matter (DOM). PE negatively impacted plant litter decomposition, disrupted soil organic carbon (SOC) breakdown, interfered with the nitrogen cycle, and significantly altered microbial community structures during the process. By day 35, SOC and total nitrogen (TN) levels were reduced by 39.8% and 10.1%, respectively, in the presence of PE. Furthermore, PE significantly decreased the abundance of nitrogen-fixing microbes, including Streptomyces (43.1%) and Bacillus (45.9%), which play key roles in nitrate reduction to ammonium. This study highlights the environmental effects of MPs on plant litter decomposition and their potential implications for soil biogeochemical processes.

The measurement and insight of bacterial community structure succession in cyanobacteria biochar co-composting based on basic carbon and nitrogen indices

The effects of cyanobacteria biochar (CB) amendment on microbial community succession (MCS) during pig manure co-composting was evaluated. Conventional composting (T1) and different concentrations of CB co-composting were set up here (T2: 2.5% CB, T3: 5% CB, T4: 7.5% CB, T5: 10% CB, and T6: 20% CB). Core substrate indicators and microbial information were used to gain insight into microbial community succession structure (MCSS) by CB treatments. Low concentrations of CB show higher organic degradation rates (2.4% vs 2.2%; and Y = C ∗(1- e(-k∗x))), while high concentrations increased the content of TKN (T5: 54.40%). An innovative diversity quantization method (pan-γ-diversity T5:42.275, T1: 40.642, and T2: 34.285) was proposed through linear simulation and integration. CB optimized Bacillus and Thermobacillus were key organic degradation genera during succession (collaborate with Caldicoprobacter) and increased the abundance of important nitrogen fixation genera Chelativorans (Day 42: minimun 4.8 times; and Day 72: minimum 1.3 times) and Longispora (Max 10.0%). The existence of bacteria Caldicoprobacter (2.0-9.3%) on mineralization process showed the synergy and co-assembly effects of CB on MCSS. Moreover, mantel test also shows the assembled and cooperation of Firmicutes and Actinobacteria.

Promoting role of nitrogen-fixing bacteria and biochar on nitrogen retention and degradation of PBAT plastics during composting

Since the increasing number of polybutylene adipate terephthalate (PBAT)-based plastics entering the environment, the search for sustainable treatment methods has become a primary focus of contemporary research. Composting offers a novel approach for managing biodegradable plastics. However, a significant challenge in the composting process is how to control nitrogen loss and enhance plastic degradation. In this context, the effect of various additives on nitrogen retention, PBAT plastics degradation, and microbial community dynamics during composting was investigated. The findings revealed that the addition of nitrogen-fixing bacteria Azotobacter vinelandii and biochar (AzBC) significantly improved nitrogen retention and accelerated PBAT rupture within 40 days of composting. Specifically, the PBAT degradation rate in the AzBC group reached 29.6%, which increased by 12.14% (P < 0.05) compared to the control group. In addition, the total nitrogen (TN) content increased by 6.20% (P < 0.05), and the Nitrogen-fixing enzyme (NIT) content increased by 190 IU/L (P < 0.05). Further analysis of GC-MS confirmed the presence of low molecular weight fragmentation products, such as 6-(4-hydroxybutoxy)-6-oxohexanoic acid. The AzBC treatment promoted the proliferation of Klebsiella at the genus level that could enhance nitrogen retention and the bacteria that have the ability to degrade PBAT, such as Proteobacteria and Firmicutes at the phyla level, and Pseudoxanthomonas, Pseudomonas, and Flavobacterium genera at the genera level (P < 0.05). Correlation analysis indicated that the degradation of PBAT is positively correlated with Temperature (T), NIT, and TN, but negatively correlated with the organic matter (OM) content and germination index (GI). In conclusion, the co-application of biochar and Azotobacter vinelandii offers promising sustainable prospects for enhancing PBAT plastic degradation and reducing nitrogen loss during composting.

Characterization of manganese(II)-coupled functional microorganisms in driving lignin degradation during straw composting

The intricate structure of lignin in straw makes it challenging to hydrolyze, making it a key focus of current research. However, there has been limited study on the effect of enzyme inducer (MnSO4) combined with functional microorganisms on lignin degradation during straw composting. Based on this, four composting treatment groups were set up in this study. Control (CK), functional microorganism addition treatment (F), Mn2+ enzyme inducer (Mn), and Mn2+ enzyme inducer coupled with functional microorganism addition treatment (FMn) were tested for composting. Manganese(II)-coupled microorganisms improved lignin degradation: FMn > Mn > F > CK. They increased the lignin loss rate from 25.54 % to 42.61 %. Laccase activity increased from 3.45 to 43.74 U/g and manganese peroxidase activity increased from 145.52 to 264.91 U/g. And gene abundance was increased. Microbial community structure and dominant genera changed. Structural equations support the idea that functional microorganisms coupled with manganese can modify physicochemical indices, thereby regulating gene expression and enhancing enzyme activity. Furthermore, the stimulation of fungal growth and increased extracellular laccase and manganese peroxidase activities can affect the degradation of lignin. This study provides new insights and theoretical support for efficient lignin degradation and efficient resource utilization of compost products.

From waste to protein: a new strategy of converting composted distilled grain wastes into animal feed

Distilled grain waste (DGW) is rich in nutrients and can be a potential resource as animal feed. However, DGW contains as much as 14% lignin, dramatically reducing the feeding value. White-rot fungi such as Pleurotus ostreatus could preferentially degrade lignin with high efficiency. However, lignin derivatives generated during alcohol distillation inhibit P. ostreatus growth. Thus, finding a new strategy to adjust the DGW properties to facilitate P. ostreatus growth is critical for animal feed preparation and DGW recycling. In this study, three dominant indigenous bacteria, including Sphingobacterium thermophilum X1, Pseudoxanthomonas byssovorax X3, and Bacillus velezensis 15F were chosen to generate single and compound microbial inoculums for DGW composting to prepare substrates for P. ostreatus growth. Compared with non-inoculated control or single microbial inoculation, all composite inoculations, especially the three-microbial compound, led to faster organic metabolism, shorter composting process, and improved physicochemical properties of DGW. P. ostreatus growth assays showed the fastest mycelial colonization (20.43 μg·g-1 ergosterol) and extension (9 mm/d), the highest ligninolytic enzyme activities (Lac, 152.68 U·g-1; Lip, 15.56 U·g-1; MnP, 0.34 U·g-1; Xylanase, 10.98 U·g-1; FPase, 0.71 U·g-1), and the highest lignin degradation ratio (30.77%) in the DGW sample after 12 h of composting with the three-microbial compound inoculation when compared to other groups. This sample was relatively abundant in bacteria playing critical roles in amino acid, carbohydrate, energy metabolism, and xenobiotic biodegradation, as suggested by metagenomic analysis. The feed value analysis revealed that P. ostreatus mycelia full colonization in composted DGW led to high fiber content retention and decreased lignin content (final ratio of 5% lignin) but elevated protein concentrations (about 130 g·kg-1 DM). An additional daily weight gain of 0.4 kg/d was shown in cattle feeding experiments by replacing 60% of regular feed with it. These findings demonstrate that compound inoculant consisting of three indigenous microorganisms is efficient to compost DGW and facilitate P. ostreatus growth. P. ostreatus decreased the lignin content of composted DGW during its mycelial growth, improving the quality of DGW for feeding cattle.

The positive effect of the enzyme inducer (MnSO4) on the formation of humic substance in rice straw composting by stimulating key microorganisms

This study investigated the impact of adding enzyme inducer (MnSO4) on humic substance (HS) formation during straw composting. The results demonstrated that both enzyme inducer treatment group (Mn) and functional microorganism treatment group (F) led to an increase in the content of HS compared to the treatment group without enzyme inducer and functional microorganism (CK). Interestingly, the enzyme inducer exhibited a higher promoting effect on HS (57.80 % ~ 58.58 %) than functional microbial (46.54 %). This was because enzyme inducer stimulated the growth of key microorganisms and changed the interaction relationship between microorganisms. The structural equation model suggested that the enzyme inducer promoted the utilization of amino acids by the fungus and facilitated the conversion of precursors to humic substance components. These findings provided a direction for improving the quality of composting products from agricultural straw waste. It also provided theoretical support for adding MnSO4 to compost.

Enhancing C and N turnover, functional bacteria abundance, and the efficiency of biowaste conversion using Streptomyces-Bacillus inoculation

Microbial inoculation plays a significant role in promoting the efficiency of biowaste conversion. This study investigates the function of Streptomyces-Bacillus Inoculants (SBI) on carbon (C) and nitrogen (N) conversion, and microbial dynamics, during cow manure (10% and 20% addition) and corn straw co-composting. Compared to inoculant-free controls, inoculant application accelerated the compost's thermophilic stage (8 vs 15 days), and significantly increased compost total N contents (+47%) and N-reductase activities (nitrate reductase: +60%; nitrite reductase: +219%). Both bacterial and fungal community succession were significantly affected by DOC, urease, and NH4+-N, while the fungal community was also significantly affected by cellulase. The contribution rate of Cupriavidus to the physicochemical factors of compost was as high as 83.40%, but by contrast there were no significantly different contributions (∼60%) among the top 20 fungal genera. Application of SBI induced significant correlations between bacteria, compost C/N ratio, and catalase enzymes, indicative of compost maturation. We recommend SBI as a promising bio-composting additive to accelerate C and N turnover and high-quality biowaste maturation. SBI boosts organic cycling by transforming biowastes into bio-fertilizers efficiently. This highlights the potential for SBI application to improve plant growth and soil quality in multiple contexts.

Elucidating carbon conversion and bacterial succession by amending Fenon-like systems during co-composting of pig manure and branch

The essential point of current study was to investigate the effect of a Fenton-like system established by oxalic acid and Fe(II) on gas emission, organic matter decomposition and humification during composting. Branches were pretreated with Fenton reagents (0.02 M FeCl2·4H2O + 1.5 M H2O2) and then adding 10 % oxalic acid (OA). The treatments were marked as B1 (control), B2 (Fenton reagent), B3 (10% OA) and B4 (Fenton-like reagent). The results collected from 80 d of composting showed that adding Fenton-like reagent benefited the degradation of organic substances, as reflected by the total organic carbon and dissolved organic carbon, and the maximum decomposition rate was observed in B4. In addition, the Fenton-like reagent could improve the synthesis of humus characterized by complex and stable compounds, which was consistent with the spectral parameters (SUVA254, SUVA280, E253/E203 and Fourier transform-infrared indicators) of DOC. Furthermore, the functional microbial succession performance and linear discriminant effect size analyses provided microbial evidence of humification improvement. Notably, compared with the control, the minimum value of CH4 cumulation was reported in B4, which decreased by 30.44 %. Concluded together, the addition of a Fenton-like reagent composed by OA and Fe(II) is a practical way to improve the humification. Furthermore, the mechanisms related to the promotion of humification should be investigated from free radicals, functional genes, and metabolic pathways.

Plant-derived biochar amendment for compost maturity improvement and gaseous emission reduction in food waste composting: Insight from bacterial community and functions

This study assessed the impact of different plant-derived biochar (cornstalk, rice husk, and sawdust) on bacterial community and functions for compost maturity and gaseous emissions during the composting of food waste. Results showed that all biochar strengthened organic biotransformation and caused a higher germination index on day 12 (over 100%), especially for rice husk biochar to enhance the growth of Thermobifida related to aerobic chemoheterotrophy. Rice husk biochar also achieved a relatively higher reduction efficiency of methane (85.8%) and ammonia (82.7%) emissions since its greater porous structure. Besides, the growth of Pseudomonas, Pusillimonas, and Desulfitibacter was restricted to constrict nitrate reduction, nitrite respiration, and sulfate respiration by optimized temperature and air permeability, thus reducing nitrous oxide and hydrogen sulfide emissions by 48.0-57.3% by biochar addition. Therefore, rice husk biochar experienced the optimal potential for maturity increment and gaseous emissions mitigation.

Effect of biochar with various pore characteristics on heavy metal passivation and microbiota development during pig manure composting

Understanding the porosity of biochar (BC) that promotes the heavy metal (HM) passivation during composting can contribute to the sustainable management of pig manure (PM). The current work aimed to explore the influence of BC with varying pore sizes on the physicochemical properties and morphological changes of HMs (including Zn, Cu, Cr, As, and Hg), and microbiota development during PM composting. The various pore sizes of BC were generated by pyrolyzing pine wood at 400 (T1), 500 (T2), 600 (T3) and 700 (T4) °C, respectively. The results revealed a positive correlation between specific surface area of BC and pyrolysis temperature. BC addition contributed to a significantly extended compost warming rate and duration of high-temperature period, as well as HM passivation, reflected in the decrease in Exc-Zn (63-34%) and Red-Cu (28-13%) content, and the conversion of Oxi-Cr (29-21%) and Red-Hg (16-5%) to more stable forms. Moreover, BC at T4 exhibited the best effect on Zn and Cu passivation due to the highest specific surface area (380.03 m2/g). In addition to its impact on HM passivation, BC addition improved the microbial environment during PM composting, leading to enhanced microbial diversity and richness. Notably, Chloroflexi and Bacteroidota played key roles in promoting the transformation of Exc-Cu and Red-Hg into stable forms. This phenomenon further stimulated the enhanced decomposition of organic matter (OM) when BC prepared at 600-700 °C was added. Therefore, it can be concluded that the regulation of BC porosity is an effective strategy to improve HM passivation and the overall effectiveness of PM composting.

Microbial agents obtained from tomato straw composting effectively promote tomato straw compost maturation and improve compost quality

Appropriate management of agricultural organic waste (AOW) presents a significant obstacle in the endeavor to attain sustainable agricultural development. The proper management of AOW is a necessity for sustainable agricultural development. This can be done skillfully by incorporating microbial agents in the composting procedure. In this study, we isolated relevant bacteria strains from tomato straw AOW, which demonstrated efficient degradation of lignocellulose without any antagonistic effects in them. These strains were then combined to create a composite microbial agent called Zyco Shield (ZS). The performance of ZS was compared with a commercially effective microorganism (EM) and a control CK. The results indicate that the ZS treatment significantly prolonged the elevated temperature phase of the tomato straw pile, showing considerable degradation of lignocellulosic material. This substantial degradation did not happen in the EM and CK treatments. Moreover, there was a temperature rise of 4-6 ℃ in 2 days of thermophilic phase, which was not the case in the EM and CK treatments. Furthermore, the inoculation of ZS substantially enhanced the degradation of organic waste derived from tomato straw. This method increased the nutrient content of the resulting compost and elevated the enzymatic activity of lignocellulose-degrading enzymes, while reducing the urease enzyme activity within the pile. The concentrations of NH4+-N and NO3--N showed increases of (2.13% and 47.51%), (14.81% and 32.17%) respectively, which is again very different from the results of the EM and CK treatments. To some extent, the alterations observed in the microbial community and the abundance of functional microorganisms provide indirect evidence supporting the fact that the addition of ZS microbial agent facilitates the composting process of tomato straw. Moreover, we confirmed the degradation process of tomato straw through X-ray diffraction, Fourier infrared spectroscopy, and by scanning electron microscopy to analyze the role of ZS microbial inoculum composting. Consequently, reinoculation compost strains improves agricultural waste composting efficiency and enhances product quality.

Brown sugar as a carbon source can make agricultural organic waste compost enter the secondary thermophilic stage and promote compost decomposition

To enhance the efficiency of composting agricultural organic waste (AOW), this study aimed to examine the impact of inoculating tomato straw compost with two distinct microbial agents: ZymoZone (ZZ), a composite microbial agent derived from the straw compost and Effective Microorganisms (EM), a commercial microbial agent. Furthermore, in order to reactivate the microorganisms within the compost during the initial high temperature phase, 10% brown sugar was introduced as a carbon source. The objective of this addition was to assess its influence on the composting process. The findings revealed that compared to the control (CK) group, the ZZ and EM treatments extended the first high-temperature phase by 2 and 1 day, respectively. Furthermore, with the addition of 10% brown sugar, the ZZ and EM treatments remained in the second high-temperature phase for 8 and 7 days, respectively, while the CK treatment had already entered the cooling stage by then. Notably, the inoculation of microbial agents and the addition of brown sugar substantially augmented the activity of lignocellulose-related hydrolases, thereby promoting the degradation of lignocellulose in the ZZ and EM treatment groups. This was confirmed by FTIR analysis, which demonstrated that the addition of microbial agents facilitated the degradation of specific substances, leading to reduced absorbance in the corresponding spectra. XRD analysis further indicated a notable reduction in cellulose crystallinity for both the ZZ (8.00%) and EM (7.73%) treatments. Hence, the incorporation of microbial agents and brown sugar in tomato straw compost effectively enhances the composting process and improves the quality of compost products.

Enhanced removal of antibiotic resistance genes during chicken manure composting after combined inoculation of Bacillus subtilis with biochar

This study explored the combined effects of Bacillus subtilis inoculation with biochar on the evolution of bacterial communities, antibiotic resistance genes (ARGs), and mobile genetic elements (MGEs) during the composting of chicken manure. The results showed that B. subtilis inoculation combined with biochar increased bacterial abundance and diversity as well as prolonged the compost thermophilic period. Promoted organic matter biodegradation and facilitated the organic waste compost humification process, reduced the proliferation of ARGs by altering the bacterial composition. Firmicutes and Actinobacteriota were the main resistant bacteria related to ARGs and MGEs. The decrease in ARGs and MGEs was associated with the reduction in the abundance of related host bacteria. Compost inoculation with B. subtilis and the addition of biochar could promote nutrient transformation, reduce the increase in ARGs and MGEs, and increase the abundance of beneficial soil taxa.

Effect of municipal sludge-based biochar produced at different pyrolysis temperatures on humification and oxytetracycline degradation of pig manure composting

This study explored the influence of pyrolysis temperatures on the properties of municipal sludge-based biochar (MSB) and evaluated the impact of MSB on humification and oxytetracycline (OTC, a broad-spectrum antibiotic) degradation in pig manure composting. Three types of MSB were produced from sewage sludge pyrolyzed at 300 °C, 500 °C, and 700 °C, respectively. Results indicated that pyrolysis temperature adjusted the formation sequence of the functional groups in MSB, and higher pyrolysis temperatures enriched the aromaticity of the biochar and augmented the concentrations of humic precursor compounds. The MSB addition to pig manure composting enhanced the peak temperature and prolonged the thermophilic phase. Moreover, the MSB addition significantly increased the HI (humic acid/fulvic acid) values (1.6-2.57) compared with the control (1.28), with a more pronounced effect observed at higher biochar pyrolysis temperatures. Furthermore, the MSB reduced the half-life of OTC degradation (1.47-2.44 d) during composting, accelerating its degradation compared with the control (2.66 d). The study demonstrated that the MSB provided a substantial amount of humic precursor materials into the composting process while also expediting the degradation of organic matter, thereby enhancing the humification process. Moreover, the extended duration of the thermophilic phase accelerated the degradation of OTC and shortened its half-life. Notably, the MSB at 700 °C had the best performance compared with other MSBs.

Antibiotics and antibiotic resistance gene dynamics in the composting of antibiotic fermentation waste - A review

Fate of antibiotics and antibiotic resistance genes (ARGs) during composting of antibiotic fermentation waste (AFW) is a major concern. This review article focuses on recent literature published on this subject. The key findings are that antibiotics can be removed effectively during AFW composting, with higher temperatures, appropriate bulking agents, and suitable pretreatments improving their degradation. ARGs dynamics during composting are related to bacteria and mobile genetic elements (MGEs). Higher temperatures, suitable bulking agents and an appropriate C/N ratio (30:1) lead to more efficient removal of ARGs/MGEs by shaping the bacterial composition. Keeping materials dry (moisture less than 30%) and maintaining pH stable around 7.5 after composting could inhibit the rebound of ARGs. Overall, safer utilization of AFW can be realized by optimizing composting conditions. However, further removal of antibiotics and ARGs at low levels, degradation mechanism of antibiotics, and spread mechanism of ARGs during AFW composting require further investigation.

Effects of oyster shells on maturity and calcium activation in organic solid waste compost

With the rapid development of aquaculture, the production of oyster shells has surged, posing a potential threat to the environment. While oyster shell powder is widely recognized for its inherent alkalinity and rich calcium carbonate content, making it a superior soil conditioner, its role in organic solid waste composting remains underexplored. To investigate the effects of varying concentrations of oyster shell powder on compost maturation and calcium activation, this study employed thermophilic co-composting with acidic sugar residue and bean pulp, incorporating 0% (control), 10% (T1), 20% (T2), 30% (T3), and 40% (T4) oyster shell powder. Findings revealed that appropriate proportions of oyster shell powder significantly enhance temperature stability during composting and elevate maturation levels, notably reducing ammonia emissions between 62.5% and 76.7%. Intriguingly, the calcium in the oyster shell powder was significantly activated during composting, with the 40% addition group achieving the highest calcium activation rate of 48.5%. In summation, the inclusion of oyster shell powder not only optimizes the composting process but also efficiently activates the calcium, resulting in an alkaline organic-inorganic composite soil conditioner with high exchangeable calcium content. This research holds significant implications for promoting the high-value utilization of oyster shells.

The efficient solution to decline the greenhouses emission and enrich the bacterial community during pig manure composting: Regulating the particle size of cornstalk

In present study, four lengths of chopped cornstalks were amended with pig manure respectively for 100 days aerobic fermentation, which aimed to evaluate the impact of different length of agricultural solid wastes on gaseous emission and dominating bacterial community succession and connection. The result revealed that the maximum ammonia volatilization was observed in 5 cm of straw samples attributed to the prominent mineralization, which was opposite to the emission of CH4 and N2O. As for global warming potential, the minimum value was detected in 5 cm of straw samples, which decreased by 5.03-24.75% compared with other samples. Additionally, the strongest correlation and complexity of bacterial community could be detected in 5 cm of straw treatment, representing the most vigorous bacterial metabolic ability could be recorded by optimizing the microbial habitat. Therefore, in order to decline the greenhouse effect in livestock manure composting, the 5 cm of corn straw was recommended.

Feedstock optimization with rice husk chicken manure and mature compost during chicken manure composting: Quality and gaseous emissions

This study investigated the impact of mature compost input on compost quality, greenhouse gases (GHGs, i.e. methane and nitrous oxide) and ammonia emissions during chicken manure and rice husk chicken manure co-composting. The experiment used different volumes of mature compost: 10% (T1), 20% (T2), and 30% (T3) to replace rice husk chicken manure. Results showed that mature compost enhanced compost maturity by promoting the activities of Bacillus, Caldicoprobacter, Thermobifida, Pseudogracilibacillus, Brachybacterium, and Sinibacillus. Compared to CK, T1, T2, and T3 reduced NH3 emission by 32.07%, 33.64%, and 56.12%, and mitigated 14.97%, 16.57%, and 26.18% of total nitrogen loss, respectively. Additionally, T2 and T3 reduced CH4 emission by 40.98% and 62.24%, respectively. The N2O emissions were positive correlation with Lactobacillus, Pseudogracilibacillus and ammonium nitrogen (p < 0.05), while T2 reducing total greenhouse effects. Therefore, replacing rice husk chicken manure with 20% mature compost is an efficient and promising approach for composting.

Quorum sensing in different subcommunities becomes the key factor affecting the humification of the aerobic composting system with sauerkraut fermentation wastewater

Aerobic composting is an effective and harmless method to treat Sauerkraut fermentation wastewater (SFW). Given the limited understanding of the effect of quorum sensing (QS) on humification in subcommunities under acidic environments, a large-scale analysis was conducted to identify features that impact the response of QS to humification in different subcommunities. The results showed that the addition of SFW directly affected humification in subcommunities A and C, and the abundances of functional genes related to carbon fixation and carbon degradation were significantly increased at 7 and 15 d, respectively. In addition, subcommunity B indirectly affected humus production but regulated carbon metabolic pathways such as glycolysis/gluconeogenesis and pentose phosphate by QS with subcommunities B. These findings provide a novel perspective for analysing the regulation of humification in aerobic composting and suggest that composting has potential applications in organic wastewater treatment.

Relating bacterial dynamics and functions to greenhouse gas and odor emissions during facultative heap composting of four kinds of livestock manure

Although facultative heap composting is widely used in small and medium-sized livestock farms in China, there are few studies on greenhouse gas (GHG) and odor emissions from this composting system. This study focused on GHG and odor emissions from facultative heap composting of four types of livestock manure and revealed the relationship between the gaseous emissions and microbial communities. Results showed that pig, sheep, and cow manure reached high compost maturity (germination index (GI) > 70%), whereas chicken manure had higher phytotoxicity (GI = 0.02%) with higher electrical conductivity and a lower carbon/nitrogen ratio. The four manure types significantly differed in the total GHG emission, with the following pattern: pig manure (308 g CO2-eq·kg-1) > cow manure (146 g CO2-eq·kg-1) > chicken manure (136 g CO2-eq·kg-1) > sheep manure (95 g CO2-eq·kg-1). Bacterium with Fermentative, Methanotrophy and Nitrite respiratory functions (e.g. Pseudomonas and Lactobacillus) are enriched within the pile so that more than 90% of the GHGs are produced in the early (days 0-15) and late (days 36-49) composting periods. CO2 contributed more than 90% in the first 35 d, N2O contributed 40-75% in the late composting period, and CH4 contributed less than 8.0%. NH3 and H2S emissions from chicken and pig manure were 4.8 times those from sheep and cow manure. Overall, the gas emissions from facultative heap composting significantly differed among the four manure types due to the significant differences in their physicochemical properties and microbial communities.

Linking the shifts in the metabolically active microbiota in a UASB and hybrid anaerobic-aerobic bioreactor for swine wastewater treatment

Due to the high concentration of pollutants, swine wastewater needs to be treated prior to disposal. The combination of anaerobic and aerobic technologies in one hybrid system allows to obtain higher removal efficiencies compared to those achieved via conventional biological treatment, and the performance of a hybrid system depends on the microbial community in the bioreactor. Here, we evaluated the community assembly of an anaerobic-aerobic hybrid reactor for swine wastewater treatment. Sequencing of partial 16S rRNA coding genes was performed using Illumina from DNA and retrotranscribed RNA templates (cDNA) extracted from samples from both sections of the hybrid system and from a UASB bioreactor fed with the same swine wastewater influent. Proteobacteria and Firmicutes were the dominant phyla and play a key role in anaerobic fermentation, followed by Methanosaeta and Methanobacterium. Several differences were found in the relative abundances of some genera between the DNA and cDNA samples, indicating an increase in the diversity of the metabolically active community, highlighting Chlorobaculum, Cladimonas, Turicibacter and Clostridium senso stricto. Nitrifying bacteria were more abundant in the hybrid bioreactor. Beta diversity analysis revealed that the microbial community structure significantly differed among the samples (p < 0.05) and between both anaerobic treatments. The main predicted metabolic pathways were the biosynthesis of amino acids and the formation of antibiotics. Also, the metabolism of C5-branched dibasic acid, Vit B5 and CoA, exhibited an important relationship with the main nitrogen-removing microorganisms. The anaerobic-aerobic hybrid bioreactor showed a higher ammonia removal rate compared to the conventional UASB system. However, further research and adjustments are needed to completely remove nitrogen from wastewater.

Biochar applications in microbial fermentation processes for producing non-methane products: Current status and future prospects

The objective of this review is to encourage the technical development of biochar-assisted microbial fermentation. To this end, recent advances in biochar applications for microbial fermentation processes (i.e., non-methane products of hydrogen, acids, alcohols, and biofertilizer) have been critically reviewed, including process performance, enhanced mechanisms, and current research gaps. Key findings of enhanced mechanisms by biochar applications in biochemical conversion platforms are summarized, including supportive microbial habitats due to the immobilization effect, pH buffering due to alkalinity, nutrition supply due to being rich in nutrient elements, promoting electron transfer by acting as electron carriers, and detoxification of inhibitors due to high adsorption capacity. The current technical limitations and biochar's industrial applications in microbial fermentation processes are also discussed. Finally, suggestions like exploring functionalized biochar materials, biochar's automatic addition and pilot-scale demonstration are proposed. This review would further promote biochar applications in microbial fermentation processes for the production of non-methane products.

Biochar as functional amendment for antibiotic resistant microbial community survival during hen manure composting

The study aim was to reveal the mechanism of impact of two type biochar on composting of hen manure (HM) and wheat straw (WS). Biochar derived from coconut shell and bamboo used as additives to reduce antibiotic resistant bacteria (ARB) in HM compost. The results manifested that effect of biochar amendment was significant to reduce ARB in HM composting. Compared with control, the microbial activity and abundance were increased in both biochar applied treatment, and bacterial community was changed. Additionally, network analysis revealed that biochar amendment increased the quantity of microorganisms related to organic matter degrading. Among them, coconut shell biochar (CSB) played a pioneering role to mitigate ARB to better exert its effects. Structural correlation analysis showed that CSB reduce ARB mobility and promote organic matter degradation via improving beneficial bacterial community structure. Overall, composting with participation of biochar amendment stimulated antibiotic resistance bacterial dynamics. These results evidence practical value for scientific research and lay the foundation for agricultural promotion of composting.

Insight into the microbial mechanisms for the improvement of spent mushroom substrate composting efficiency driven by phosphate-solubilizing Bacillus subtilis

The objective of this study was to investigate the microbial mechanisms for the improvement of composting efficiency after Bacillus subtilis inoculation with soluble phosphorus function in the spent mushroom substrate (SMS) aerobic composting. The methods in this study, including redundant analysis (RDA), co-occurrence network analyze and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt 2) were carried out studying the dynamic changes of phosphorus (P) components, microbial interactions and metabolic characteristics in the SMS aerobic composting inoculated with phosphorus-solubilizing B. subtilis (PSB). An increase in germination index (GI) (up to 88.4%), total nitrogen (TN) (16.6 g kg^-1), available P content (0.34 g kg^-1) and total P (TP) content (3.20 g kg^-1) and a decrease in total organic carbon (TOC), C/N and electrical conductivity (EC) in final composting stage indicated B. subtilis inoculation could further improve maturity quality of the composting product compared with CK. Other results also demonstrated that PSB inoculation increased the stability of compost, humification degree and bacterial diversity, contributing to P fractions transformation in the composting process. Co-occurrence analysis suggested that PSB strengthened microbial interactions. Metabolic function of bacterial community analysis showed pathways such as carbohydrate metabolism, and amino acid metabolism in the composting were increased by effects of PSB inoculation. In summary, this study reveals a useful basis for better regulating the P nutrient level of the SMS composting and reducing environmental risks by inoculating B. subtilis with P solubilizing function.

Moderate organic fertilizer substitution for partial chemical fertilizer improved soil microbial carbon source utilization and bacterial community composition in rain-fed wheat fields: current year

Organic fertilizers can partially replace chemical fertilizers to improve agricultural production and reduce negative environmental impacts. To study the effect of organic fertilizer on soil microbial carbon source utilization and bacterial community composition in the field of rain-fed wheat, we conducted a field experiment from 2016 to 2017 in a completely randomized block design with four treatments: the control with 100% NPK compound fertilizer (N: P2O5: K2O = 20:10:10) of 750 kg/ha (CK), a combination of 60% NPK compound fertilizer with organic fertilizer of 150 kg/ha (FO1), 300 kg/ha (FO2), and 450 kg/ha (FO3), respectively. We investigated the yield, soil property, the utilization of 31 carbon sources by soil microbes, soil bacterial community composition, and function prediction at the maturation stage. The results showed that (1) compared with CK, organic fertilizer substitution treatments improved ear number per hectare (13%-26%), grain numbers per spike (8%-14%), 1000-grain weight (7%-9%), and yield (3%-7%). Organic fertilizer substitution treatments increased the total nitrogen, available nitrogen, available phosphorus, and soil organic matter contents by 26%, 102%, 12%, and 26%, respectively, compared with CK treatments. Organic fertilizer substitution treatments significantly advanced the partial productivity of fertilizers. (2) Carbohydrates and amino acids were found to be the most sensitive carbon sources for soil microorganisms in different treatments. Particularly for FO3 treatment, the utilization of β-Methyl D-Glucoside, L-Asparagine acid, and glycogen by soil microorganisms was higher than other treatments and positively correlated with soil nutrients and wheat yield. (3) Compared with CK, organic fertilizer substitution treatments increased the relative abundance of Proteobacteria, Acidobacteria, and Gemmatimonadetes and decreased the relative abundance of Actinobacteria and Firmicutes. Interestingly, FO3 treatment improved the relative abundance of Nitrosovibrio, Kaistobacter, Balneimonas, Skermanella, Pseudomonas, and Burkholderia belonging to Proteobacteria and significantly boosted the relative abundance of function gene K02433 [the aspartyl-tRNA (Asn)/glutamyl-tRNA (Gln)]. Based on the abovementioned findings, we suggest FO3 as the most appropriate organic substitution method in rain-fed wheat fields.

Biochar preparation and evaluation of its effect in composting mechanism: A review

This article provides an overview of biochar application for organic waste co-composting and its biochemical transformation mechanism. As a composting amendment, biochar work in the adsorption of nutrients, the retention of oxygen and water, and the promotion of electron transfer. These functions serve the micro-organisms (physical support of niche) and determine changes in community structure beyond the succession of composing primary microorganisms. Biochar mediates resistance genes, mobile gene elements, and biochemical metabolic activities of organic matter degrading. The participation of biochar enriched the α-diversity of microbial communities at all stages of composting, and ultimately reflects the high γ-diversity. Finally, easy and convincing biochar preparation methods and characteristic need to be explored, in turn, the mechanism of biochar on composting microbes at the microscopic level can be studied in depth.

Exploring gaseous emissions and pivotal enzymatic activity during co-composting of branch and pig manure: the effect of particle size of bulking agents

The purpose of current study was to probe the effect of various length of branch on gaseous emissions and vital enzymatic activity. Four lengths (<2 cm, 2 cm, 5 cm, and 10 cm) of clipped branch were mingled with collected pig manure for 100 days aerobic fermentation. The consequence demonstrated that the amendment of 2 cm of branch showed conducive to decline the greenhouse gas emissions, which the CH₄ emissions decreased by 1.62-40.10%, and the N₂O emissions decreased by 21.91-34.04% contrasted with other treatments. Furthermore, the peak degree of enzymatic activities was also observed in 2 cm of branch treatment by the optimizing living condition for microbes. In view of microbiological indicators, the most abundant and complex bacterial community could be monitor in 2 cm of branch composting pile, which verified the microbial facilitation. Summing up, the strategy of 2 cm branch amendment would be recommended.

Response characteristics of Flax retting liquid addition during chicken manure composting: Focusing on core bacteria in organic carbon mineralization and humification

To explore the applicability of flax retting liquid (FRL) addition, the physicochemical properties, microbial community structure and function, carbon conversion and humus (HS) formation were assessed during chicken manure (CM) aerobic composting. Compared with the control group, the addition of FRL increased the temperature at thermophilic phase, while the microbial mass carbon content (MBC) in SCF and FRH groups raised to 96.1±0.25 g/Kg and 93.33±0.27 g/Kg, respectively. Similarly, FRL also improved the concent of humic acid (HA) to 38.44±0.85 g/Kg, 33.06±0.8 g/Kg, respcetively. However, fulvic acid (FA) decreased to 30.02±0.55g/Kg, 31.4±0.43 g/Kg, respectively and further reduced CO₂ emissions. FRL influenced the relative abundance of Firmicutes at thermophilic phase and Ornithinimicrobium at maturity phase. Additionally, FRL strengthen the association among flora and reduce the number of bacteria, which was negative correlated with HA and positive with CO₂ during composting. These findings offer powerful technological support for improving agricultural waste recycling.

Liquid-gas phase transition enables microbial electrolysis and H2-based membrane biofilm hybrid system to degrade organic pollution and achieve effective hydrogenotrophic denitrification of groundwater

Electron-donor Lacking was the limiting factor for the denitrification of oligotrophic groundwater and hydrogenotrophic denitrification provided an efficient approach without secondary pollution. In this study, a hybrid system with microbial electrolysis cell (MEC) assisted hydrogen-based membrane biofilm reactor (MBfR) was established for advanced groundwater denitrification. The liquid-gas phase transition prevented the potential pollution from organic wastes in MEC to groundwater, while the bubble-free diffusion of MBfR promoted hydrogen utilization efficiency. The negative-pressure extraction from MEC and the positive pressure for gas supply into MBfR increased the hydrogen proportion and current density of MEC, and improved the kinetic constant K of the denitrification reaction in MBfR. With actual groundwater, the MEC-MBfR hybrid system achieved a nitrate reduction of 97.8% with an effluent NO₃^--N of 2.2 ± 1.0 mg L^-1. The hydrogenotrophic denitrifiers of Thauera, Pannonibacter, and Azonexus, dominated the denitrification biofilm on the membrane and elastic filler in MBfR.

Co-composting of cattle manure and wheat straw covered with a semipermeable membrane: organic matter humification and bacterial community succession

Semipermeable membrane-covered composting is one of the most commonly used composting technologies in northeast China, but its humification process is not yet well understood. This study employed a semipermeable membrane-covered composting system to detect the organic matter humification and bacterial community evolution patterns over the course of agricultural waste composting. Variations in physicochemical properties, humus composition, and bacterial communities were studied. The results suggested that membrane covering improved humic acid (HA) content and degree of polymerization (DP) by 9.28% and 21.57%, respectively. Bacterial analysis indicated that membrane covering reduced bacterial richness and increased bacterial diversity. Membrane covering mainly affected the bacterial community structure during thermophilic period of composting. RDA analysis revealed that membrane covering may affect the bacterial community by altering the physicochemical properties such as moisture content. Correlation analysis showed that membrane covering activated the dominant genera Saccharomonospora and Planktosalinus to participate in the formation of HS and HA in composting, thus promoting HS formation and its structural complexity. Membrane covering significantly reduced microbial metabolism during the cooling phase of composting.

Evaluation of physicochemical properties, bacterial community, and product fertility during rice straw composting supplemented with different nitrogen-rich wastes

This study evaluated the compostability of rice straw as the main feedstock (75 % in dry weight), supplemented with three different nitrogen-rich wastes, namely food waste (FW), dairy manure (DM), and sewage sludge (SS). Organic matter (OM) degradation, maturity and fertility of the end-product, and bacterial community structure during the composting processes were compared. All composting processes generated mature end-product within 51 days. Notably, FW addition was more effective to accelerate rice straw OM degradation and significantly improved end-product fertility with a high yield of Chinese cabbage. The succession of the bacterial community was accelerated with FW supplementation. Genera Geobacillus, Chryseolinea, and Blastocatella were significantly enriched during the composting of rice straw with FW supplementation. Finally, temperature, total nitrogen, moisture, pH, and total carbon were the key factors affecting microorganisms. This study provides a promising alternative method to enhance the disposal of larger amounts of rice straw in a shorter time.

Exploration of β-glucosidase-producing microorganisms community structure and key communities driving cellulose degradation during composting of pure corn straw by multi-interaction analysis

Poor management of crop residues leads to environmental pollution and composting is a sustainable practice for addressing the challenge. However, knowledge about composting with pure crop straw is still limited, which is a novel and feasible composting strategy. In this study, pure corn straw was in-situ composted for better management. Community structure of β-glucosidase-producing microorganisms during composting was deciphered using high-throughput sequencing. Results showed that the compost was mature with organic matter content of 37.83% and pH value of 7.36 and pure corn straw could be composted successfully. Cooling phase was major period for cellulose degradation with the highest β-glucosidase activity (476.25 μmol·p-Nitr/kg·dw·min) and microbial diversity (Shannon index, 3.63; Chao1 index, 500.81). Significant compositional succession was observed in the functional communities during composting with Streptomyces (14.32%), Trichoderma (13.85%) and Agromyces (11.68%) as dominant genera. β-Glucosidase-producing bacteria and fungi worked synergistically as a network to degrade cellulose with Streptomyces (0.3045**) as the key community revealed by multi-interaction analysis. Organic matter (-0.415***) and temperature (-0.327***) were key environmental parameters regulating cellulose degradation via influencing β-glucosidase-producing communities, and β-glucosidase played a key role in mediating this process. The above results indicated that responses of β-glucosidase-producing microorganisms to cellulose degradation were reflected at both network and individual levels and multi-interaction analysis could better explain the relationship between variables concerning composting cellulose degradation. The work is of significance for understanding cellulose degradation microbial communities and process during composting of pure corn straw.

Greenhouse gas reduction and nitrogen conservation during manure composting by combining biochar with wood vinegar

The constant greenhouse gases (GHGs) and ammonia emissions during pig manure (PM) composting have made large contributions to air pollution and global temperature rise. This study aimed to evaluate the addition of biochar (B) and wood vinegar (WV) to reduce GHGs emissions and improve nitrogen retention and microbial activities during PM composting. Different treatments, carried out under a 1:2 ratio (dry weight) of PM and sawdust mixture with the addition of B (5%) and various proportions of WV, include a control treatment (CT) without the addition of B and WV and, B, B+0.5%WV, B+1.0%WV, B+1.5%WV, and B+2.0%WV treatments. The results indicated that the addition of B could accelerate the composting process in contrast to CT. In addition, various amounts of WV with B decreased NH₃, CO₂, CH₄ and N₂O emissions by 18.82-35.88%, 1.38-15.39%, 16.98-62.73%, and 4.47-19.91%, respectively. Furthermore, in contrast to the B treatment, WV addition was more effective in decreasing GHGs and NH₃ emissions, and the B+1.0% WV treatment displayed the lowest nitrogen loss (2.12%) and GHGs emissions (11.62 g/kg). The bacterial community analysis demonstrated that synergistic application of WV and B can increase the relative abundance of Proteobacteria which can contribute to nitrogen fixation and reduction of nitrogen loss. The results proved that combining B with WV can be a feasible strategy to effectively reduce GHGs emissions and improve nitrogen conservation in the composting industry.

Plant Microbiome Engineering: Hopes or Hypes

Rhizosphere microbiome is a dynamic and complex zone of microbial communities. This complex plant-associated microbial community, usually regarded as the plant's second genome, plays a crucial role in plant health. It is unquestioned that plant microbiome collectively contributes to plant growth and fitness. It also provides a safeguard from plant pathogens, and induces tolerance in the host against abiotic stressors. The revolution in omics, gene-editing and sequencing tools have somehow led to unravel the compositions and latent interactions between plants and microbes. Similarly, besides standard practices, many biotechnological, (bio)chemical and ecological methods have also been proposed. Such platforms have been solely dedicated to engineer the complex microbiome by untangling the potential barriers, and to achieve better agriculture output. Yet, several limitations, for example, the biological obstacles, abiotic constraints and molecular tools that capably impact plant microbiome engineering and functionality, remained unaddressed problems. In this review, we provide a holistic overview of plant microbiome composition, complexities, and major challenges in plant microbiome engineering. Then, we unearthed all inevitable abiotic factors that serve as bottlenecks by discouraging plant microbiome engineering and functionality. Lastly, by exploring the inherent role of micro/macrofauna, we propose economic and eco-friendly strategies that could be harnessed sustainably and biotechnologically for resilient plant microbiome engineering.

Effect of microbial agents on maturity, humification, and stability and the bacterial succession of spent mushroom substrate composting

Two composting experiments were conducted to investigate the effects of commercial microbial agents on microbial succession and nutrient flow such as humification, maturation, and stability during the aerobic composting of the spent mushroom substrate (SMS). The cellulose degradation rate of T (added microbial agents at the initial stage) reached 41.8%, which was much significantly (p < 0.05) higher than that of CK (14.9%). The seed germination index (GI) in T (82.38%) was significantly (p < 0.05) higher than that in CK (74.74%) in the maturation phase. Moreover, the total organic carbon/total nitrogen ratio (C/N) and electrical conductivity (EC) value of T decreased to 10.5 and 2.37 mS/cm, respectively. Chemical detection and fluorescence excitation-emission region integration method (EEM-FRI) analysis showed that the microbial agents significantly accelerated the organic matter (OM) decomposition and promoted the quality of mature compost using SMS as a single raw material. The bacterial abundance of T was significantly richer than the CK due to the addition of microbial agents. The results could provide a comprehensive understanding of adding microbial agents into composting SMS and a scientific feasibility strategy to rational utilization of resources in the edible fungi industry, which was conducive to the waste management and sustainable development of the edible fungi industry.

Biochar improved the composting quality of seaweeds and cow manure mixture and altered the microbial community

The beneficial effects of biochar addition during composting have been proved for many feedstocks, like manures and crop straws. However, the effect of biochar on the quality of composting product with seaweed as the feedstock and the bacterial response has not been investigated. In this study, the wheat straw biochar addition on the quality of the composting product and the bacterial response was explored at the rate of 0-10%. The results showed that biochar addition at the optimal rate (5%, w/w) could increase the germination index and the ratio of the optical density of humic acid at 460 nm to that at 660 nm (E4/E6) of the composting product, which indicated the decreased biotoxicity and enhanced compost maturity. The significant increase of the nitrate nitrogen (NO₃ ^--N) content of the composting product proved the improvement of N cycling during composting process with biochar addition. The bacterial community of composting product was shifted and the relative abundance of some beneficial taxa (e.g., Muricauda and Woeseia) was significantly increased with biochar addition. Furthermore, the relative abundance of some bacterial genes related to amino acid metabolism and carbohydrate metabolism was also increased with biochar addition. The results of our study provided the positive effect of biochar addition on the composting of seaweed and could help to produce high quality seaweed fertilizer by composting with biochar addition.

Effect of calcium peroxide dosage on organic matter degradation, humification during sewage sludge composting and application as amendment for Cu (II)-polluted soils

In this research, it was the first time to investigate the effect of two dosages (5% (T1) and 10% (T2), w/w) of calcium peroxide (CP) on organic matter degradation, humification during sewage sludge composting. Additionally, the complexation of Cu to humic substance (HS) derived from CP-compost compared to no CP addition-compost (CK) was also studied. Results showed that compared to CK, T1 and T2 significantly enhanced organic matter degradation and promoted the formation of HS. Two-dimensional correlation Fourier transform infrared spectroscopy (2D-FTIR-COS) and Parallel factor (PARAFAC) analysis revealed that the addition of CP accelerated the synthesis of HS with high aromatization degree and molecular weight than those in CK, owing to the oxidation of small molecules to form carboxyl. The stability constant (log K_M) of Cu with CP-derived HS (log K_M = 4.22-5.13) indicated a greater complexation ability than CK-derived HS (log K_M = 4.05-4.45), due to the faster response of polysaccharides binding to Cu (II) and the higher humification degree of CP-derived HS. This study revealed the potential mechanisms of CP addition on the synthesis of HS and utilization of CP-compost product might provide an effective way to remedy Cu (II)-contaminated soils.

Exploring the influence mechanisms of polystyrene-microplastics on sewage sludge composting

To explore the influence mechanisms of polystyrene-microplastics (PS-MPs) on sewage sludge composting and put forward relevant composting adjustment strategies, a 30-day sewage sludge (SS) composting experiment was conducted by adding 0%, 0.5%, and 1% (w/w) PS-MPs. The addition of PS-MPs reduced compost temperature, microbial biomass carbon (MBC), and the degradation of volatile solids (2.6%-4.8%), and inhibited the activities of key enzymes (β-glucosidase and alkaline phosphatase) but increased urease activity in the thermophilic phase. Moreover, PS-MPs altered the relative abundance of dominant bacteria and changed the relevance of main enzymes and bacterial communities. Moreover, high levels of PS-MPs inhibited the contribution of dominant bacterial to alkaline phosphatase and β-glucosidase. Redundancy analysis revealed that PS-MPs affected the composting process mainly through reduced MBC at the mesophilic phase and temperature at the thermophilic phase. Thus, regulating MBC and temperature in specific phases could help overcome the adverse effects of PS-MPs on composting.

Exploring the dynamic of microbial community and metabolic function in food waste composting amended with traditional Chinese medicine residues

The aim of this study was to explore the dynamic of microbial community and metabolic function in food waste composting amended with traditional Chinese medicine residues (TCMRs). Results suggested that TCMRs addition at up to 10% leads to a higher peak temperature (60.5 °C), germination index (GI) value (119.26%), and a greater reduction in total organic carbon (TOC) content (8.08%). 10% TCMRs significantly induced the fluctuation of bacterial community composition, as well as the fungal community in the thermophilic phase. The addition of 10% TCMRs enhanced the abundance of bacterial genera such as Acetobacter, Bacillus, and Brevundimonas, as well as fungal genera such as Chaetomium, Thermascus, and Coprinopsis, which accelerated lignocellulose degradation and humification degree. Conversely, the growth of Lactobacillus and Pseudomonas was inhibited by 10% TCMRs to weaken the acidic environment and reduce nitrogen loss. Metabolic function analysis revealed that 10% TCMRs promoted the metabolism of carbohydrate and amino acid, especially citrate cycle, glycolysis/gluconeogenesis, and cysteine and methionine metabolism. Redundancy analysis showed that the carbon to nitrogen (C/N) ratio was the most significant environmental factor influencing the dynamic of bacterial and fungal communities.

Accelerated stabilization of high solid sludge by thermal hydrolysis pretreatment in autothermal thermophilic aerobic digestion (ATAD) process

Autothermal thermophilic aerobic digestion (ATAD) is a rapid biological treatment technology for sludge stabilization. To improve digestion efficiency and shorten stabilization time, thermal hydrolysis pretreatment was employed before ATAD of high solid sludge. The results showed that accelerated stabilization of high solid sludge (total solid = 10.1%) was achieved by thermal hydrolysis pretreatment with volatile solid removal efficiency of 40.3% after 8 days of ATAD, 11 days earlier than unpretreated sludge. The enhanced release and hydrolysis of intracellular organics resulted in a solubilization degree of 45.3%. The reduced sludge viscosity and improved fluidity after thermal hydrolysis facilitated mixing, aeration and organics degradation during ATAD. Excitation emission matrix analysis indicated that the fluorescence intensity of soluble microbial byproduct and tyrosine-like protein increased markedly after thermal hydrolysis and decreased after ATAD. The proportion of high molecular weight (MW > 10 kDa) substances in the supernatant increased significantly after thermal hydrolysis, while the low MW (MW < 1 kDa) substances decreased after ATAD. The significant difference in microbial composition between the pretreatment and control groups elucidated the accelerated sludge stabilization under thermal hydrolysis. This work provides an efficient and practical strategy to achieve rapid stabilization of high solid sludge.

Straw waste promotes microbial functional diversity and lignocellulose degradation during the aerobic process of pig manure in an ectopic fermentation system via metagenomic analysis

This study compares the physicochemical properties, lignocellulose degradation, microbial community composition, and carbohydrate-active enzymes (CAZymes) in ectopic fermentation systems (EFS) of pig manure mixed with either conventional padding (C) or straw waste (A). The degradation rates of cellulose, hemicellulose, and lignin were found to be significantly higher in A (27.72%, 22.72%, and 18.80%, respectively) than in C (21.05%, 16.17%, and 11.69%, respectively) owing to the activities of lignocellulolytic enzymes. Metagenomics revealed that straw addition had a stronger effect on the bacterial community succession than fungi. The abundances of Sphingobacterium, Pseudomonas, and CAZymes were higher in A than in C, as well as the auxiliary activity enzymes, which are crucial for lignocellulose degradation. Redundancy analysis indicates a positive correlation between lignocellulose degradation and Sphingobacterium, Pseudomonas, Bacillus, and Actinobacteria contents. A structural equation model was applied to further verify that the increased microbial functional diversity was the primary driver of lignocellulosic degradation, which could be effectively regulated by the enhanced temperature with straw addition. Replacing traditional padding with straw can thus accelerate lignocellulosic degradation, promote microbial functional diversity, and improve the EFS efficiency.

Role of selenite on the nitrogen conservation and greenhouse gases mitigation during the goat manure composting process

This study aimed to explore the roles of selenite (Se) on nitrogen conservation and greenhouse gases (GHGs) mitigation during the composting process. Six levels of Se(IV) dosages (i.e. 0, 2, 4, 6, 8 and 10 mg/kg) were examined for 80-day composting of goat manure and wheat straw mixtures, where the different blending proportions were marked as T1 (Control), T2, T3, T4, T5 and T6, respectively. The results showed that adding Se(IV) was beneficial for reducing NH₃ by 3.50-42.41% by buffering pH and promoting nitrification. For N₂O, it showed different responses to different Se(IV) dosages, and it was increased by 29.62-71.29% in T2-T4 but reduced by 30.45-69.54% in T5-T6. Methane (CH₄), another main component of GHGs, was increased by 1.35-107.42% by adding 2-10 mg/kg Se(IV). To further evaluate the effect of Se(IV) on GHGs, global warming potential value was calculated, which was 103.32-499.80 and minimum value was in T5. Furthermore, the physicochemical indexes, especially temperature and OM, had vital effects on microbial community. Overall, the results obtained from this study demonstrated that the application of Se (IV) in composting was reasonable to generate Se-rich organic fertilizer, and the 8 mg/kg was suggested from perspectives of nitrogen conservation and GHGs reduction.

Insight into the microbial mechanisms for the improvement of composting efficiency driven by Aneurinibacillus sp. LD3

This work explored the microbial mechanisms for the improvement of composting efficiency driven by thermotolerant lignin-degrading bacterium Aneurinibacillus sp. LD3 (LD3). Results showed that LD3 inoculant prolonged the thermophilic period by 4 days, improved the final content of humic acid, total phosphorus (TP), nitrogen, potassium and seed germination index. Inoculating LD3 enhanced the relative abundance of thermotolerant and phosphate-solubilizing microbes including the phyla of Proteobacteria, Bacteroidota, Firmicutes, and Actinobacteriota, and the genus of Bacillus, Thermoactinomyces, and Pseudomonas. Metabolic function analysis showed that sequences involved in carbohydrate and amino acid metabolism were boosted, while sequences associated with human disease were reduced after inoculating LD3. Spearman correlation analysis revealed that Aneurinibacillus has a significant positive correlation with temperature, TP, Bacillus, and Thermoactinomyces. This study provides useful information for understanding the microbial mechanisms of LD3 promoting composting efficiency, and reveals the tremendous potential of LD3 in the resource utilization of organic solid wastes.