1
|
Mendel RR, Oliphant KD. The Final Step in Molybdenum Cofactor Biosynthesis-A Historical View. Molecules 2024; 29:4458. [PMID: 39339452 PMCID: PMC11434336 DOI: 10.3390/molecules29184458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2024] [Revised: 08/29/2024] [Accepted: 09/18/2024] [Indexed: 09/30/2024] Open
Abstract
Molybdenum (Mo) is an essential micronutrient across all kingdoms of life, where it functions as a key component of the active centers of molybdenum-dependent enzymes. For these enzymes to gain catalytic activity, Mo must be complexed with a pterin scaffold to form the molybdenum cofactor (Moco). The final step of Moco biosynthesis is catalyzed by the enzyme Mo-insertase. This review focuses on eukaryotic Mo-insertases, with an emphasis on those found in plants and mammals, which have been instrumental in advancing the understanding of Mo biochemistry. Additionally, a historical perspective is provided, tracing the discovery of Mo-insertase from the early 1960s to the detailed characterization of its reaction mechanism in 2021. This review also highlights key milestones in the study of Mo-insertase, including mutant characterization, gene cloning, structural elucidation at the atomic level, functional domain assignment, and the spatial organization of the enzyme within cellular protein networks.
Collapse
Affiliation(s)
- Ralf R Mendel
- Institute of Plant Biology, Technical University Braunschweig, Humboldtstraße 1, 38106 Braunschweig, Germany
| | - Kevin D Oliphant
- Institute of Plant Biology, Technical University Braunschweig, Humboldtstraße 1, 38106 Braunschweig, Germany
| |
Collapse
|
2
|
Jung H, Jiang V, Su Z, Inaba Y, Khoury FF, Banta S. Overexpression of a Designed Mutant Oxyanion Binding Protein ModA/WtpA in Acidithiobacillus ferrooxidans for the Low pH Recovery of Molybdenum and Rhenium. JACS AU 2024; 4:2957-2965. [PMID: 39211588 PMCID: PMC11350598 DOI: 10.1021/jacsau.4c00296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 05/02/2024] [Accepted: 05/03/2024] [Indexed: 09/04/2024]
Abstract
Molybdenum and rhenium are critically important metals for a number of emerging technologies. We identified and characterized a molybdenum/tungsten transport protein (ModA/WtpA) of Acidithiobacillus ferrooxidans and demonstrated the binding of tungstate, molybdate, and chromate. We used computational design to expand the binding capabilities of the protein to include perrhenate. A disulfide bond was engineered into the binding pocket of ModA/WtpA to introduce a more favorable geometric coordination and surface charge distribution for oxyanion binding. The mutant protein experimentally demonstrated a 2-fold higher binding affinity for molybdate and 6-fold higher affinity for perrhenate. The overexpression of the wild-type and mutant ModA/WtpA proteins in A. ferrooxidans cells enhanced the innate tungstate, molybdate, and chromate binding capacities of the cells to up to 2-fold higher. In addition, the engineered cells expressing the mutant protein exhibited enhanced perrhenate binding, showing 5-fold and 2-fold higher binding capacities compared to the wild-type and ModA/WtpA-overexpressing cells, respectively. Furthermore, the engineered cell lines enhanced biocorrosion of stainless steel as well as the recovered valuable metals from an acidic wastewater generated from molybdenite processing. The improved binding efficiency for the oxyanion metals, along with the high selectivity over nontargeted metals under mixed metal environments, highlights the potential value of the engineered strains for practical microbial metal reclamation under low pH conditions.
Collapse
Affiliation(s)
- Heejung Jung
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| | - Virginia Jiang
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| | - Zihang Su
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| | - Yuta Inaba
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| | - Farid F. Khoury
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| | - Scott Banta
- Department of Chemical Engineering, Columbia University, 500 West 120th Street, New
York, New York 10027, United States
| |
Collapse
|
3
|
Cranswick MA, Sperber EC, Houser RP, Farquhar ER. Isolation and characterization of a bis(dithiolene)-supported tungsten-acetylenic complex as a model for acetylene hydratase. J Inorg Biochem 2024; 255:112543. [PMID: 38554579 DOI: 10.1016/j.jinorgbio.2024.112543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 03/07/2024] [Accepted: 03/23/2024] [Indexed: 04/01/2024]
Abstract
Acetylene hydratase is currently the only known mononuclear tungstoenzyme that does not catalyze a net redox reaction. The conversion of acetylene to acetaldehyde is proposed to occur at a W(IV) active site through first-sphere coordination of the acetylene substrate. To date, a handful of tungsten complexes have been shown to bind acetylene, but many lack the bis(dithiolene) motif of the native enzyme. The model compound, [W(O)(mnt)2]2-, where mnt2- is 1,2-dicyano-1,2-dithiolate, was previously reported to bind an electrophilic acetylene substrate, dimethyl acetylenedicarboxylate, and characterized by FT-IR, UV-vis, potentiometry, and mass spectrometry (Yadav, J; Das, S. K.; Sarkar, S., J. Am. Chem. Soc., 1997, 119, 4316-4317). By slightly changing the electrophilic acetylene substrate, an acetylenic-bis(dithiolene)‑tungsten(IV) complex has been isolated and characterized by FT-IR, UV-vis, NMR, X-ray diffraction, and X-ray absorption spectroscopy. Activation parameters for complex formation were also determined and suggest coordination-sphere reorganization is a limiting factor in the model complex reactivity.
Collapse
Affiliation(s)
- Matthew A Cranswick
- Department of Chemistry, Colorado State University Pueblo, Pueblo, CO 81001, USA.
| | - E Christine Sperber
- Department of Chemistry, Colorado State University Pueblo, Pueblo, CO 81001, USA
| | - Robert P Houser
- Department of Chemistry and Biochemistry, University of Northern Colorado, Greeley, CO 80639, USA
| | - Erik R Farquhar
- Case Western Reserve University Center for Synchrotron Biosciences, National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA.
| |
Collapse
|
4
|
Wang Y, Nie B, Zheng S, Wu H, Chen N, Wang D. Emerging activated tungsten dust: Source, environmental behaviors, and health effects. ENVIRONMENT INTERNATIONAL 2024; 188:108774. [PMID: 38810497 DOI: 10.1016/j.envint.2024.108774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 05/18/2024] [Accepted: 05/23/2024] [Indexed: 05/31/2024]
Abstract
Fusion energy investigation has stepped to a new stage adopting deuterium and tritium as fuels from the previous stage concentrating hydrogen plasma physics. Special radiation safety issues would be introduced during this stage. In addition to industrial and military uses, tungsten is also regarded as the most promising plasma facing material for fusion reactors. During the operation of fusion reactors, tungsten-based plasma facing materials can be activated via neutron nuclear reaction. Meanwhile, activated tungsten dust can be produced when high-energy plasma interacts with the tungsten-based plasma facing materials, namely plasma wall interaction. Activated tungsten dust would be an emerging environmental pollutant with radiation toxicity containing various radionuclides in addition to the chemical toxicity of tungsten itself. Nonetheless, the historical underestimation of its environmental availability has led to limited research on tungsten compared to other environmental contaminants. This paper presents the first systematic review on the safety issue of emerging activated tungsten dust, encompassing source terms, environmental behaviors, and health effects. The key contents are as follows: 1) to detail the source terms of activated tungsten dust from aspects of tungsten basic properties, generation mechanism, physical morphology and chemical component, radioactivity, as well as potential release pathways, 2) to illustrate the environmental behaviors from aspects of atmospheric dispersion and deposition, transformation and migration in soil, as well as plant absorption and distribution, 3) to identify the toxicity and health effects from aspects of toxicity to plants, distribution in human body, as well as health effects by radiation and chemical toxicity, 4) based on the research progress, research and development issues needed are also pointed out to better knowledge of safety issue of activated tungsten dust, which would be beneficial to the area of fusion energy and ecological impact caused by the routine tungsten related industrial and military applications.
Collapse
Affiliation(s)
- Yuxuan Wang
- School of Nuclear Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Baojie Nie
- School of Nuclear Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.
| | - Shanliang Zheng
- Institute of Plasma Physics, Chinese Academy of Sciences, Hefei, 230031, China
| | - Hanyu Wu
- Sino-French Institute of Nuclear Engineering and Technology, Sun Yat-sen University, Zhuhai, 519082, China
| | - Ni Chen
- School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Dezhong Wang
- School of Nuclear Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| |
Collapse
|
5
|
Ale Enriquez F, Ahring BK. Phenotypic and genomic characterization of Methanothermobacter wolfeii strain BSEL, a CO 2-capturing archaeon with minimal nutrient requirements. Appl Environ Microbiol 2024; 90:e0026824. [PMID: 38619268 PMCID: PMC11107166 DOI: 10.1128/aem.00268-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 03/17/2024] [Indexed: 04/16/2024] Open
Abstract
A new variant of Methanothermobacter wolfeii was isolated from an anaerobic digester using enrichment cultivation in anaerobic conditions. The new isolate was taxonomically identified via 16S rRNA gene sequencing and tagged as M. wolfeii BSEL. The whole genome of the new variant was sequenced and de novo assembled. Genomic variations between the BSEL strain and the type strain were discovered, suggesting evolutionary adaptations of the BSEL strain that conferred advantages while growing under a low concentration of nutrients. M. wolfeii BSEL displayed the highest specific growth rate ever reported for the wolfeii species (0.27 ± 0.03 h-1) using carbon dioxide (CO2) as unique carbon source and hydrogen (H2) as electron donor. M. wolfeii BSEL grew at this rate in an environment with ammonium (NH4+) as sole nitrogen source. The minerals content required to cultivate the BSEL strain was relatively low and resembled the ionic background of tap water without mineral supplements. Optimum growth rate for the new isolate was observed at 64°C and pH 8.3. In this work, it was shown that wastewater from a wastewater treatment facility can be used as a low-cost alternative medium to cultivate M. wolfeii BSEL. Continuous gas fermentation fed with a synthetic biogas mimic along with H2 in a bubble column bioreactor using M. wolfeii BSEL as biocatalyst resulted in a CO2 conversion efficiency of 97% and a final methane (CH4) titer of 98.5%v, demonstrating the ability of the new strain for upgrading biogas to renewable natural gas.IMPORTANCEAs a methanogenic archaeon, Methanothermobacter wolfeii uses CO2 as electron acceptor, producing CH4 as final product. The metabolism of M. wolfeii can be harnessed to capture CO2 from industrial emissions, besides producing a drop-in renewable biofuel to substitute fossil natural gas. If used as biocatalyst in new-generation CO2 sequestration processes, M. wolfeii has the potential to accelerate the decarbonization of the energy generation sector, which is the biggest contributor of CO2 emissions worldwide. Nonetheless, the development of CO2 sequestration archaeal-based biotechnology is still limited by an uncertainty in the requirements to cultivate methanogenic archaea and the unknown longevity of archaeal cultures. In this study, we report the adaptation, isolation, and phenotypic characterization of a novel variant of M. wolfeii, which is capable of maximum growth with minimal nutrients input. Our findings demonstrate the potential of this variant for the production of renewable natural gas, paving the way for the development of more efficient and sustainable CO2 sequestration processes.
Collapse
Affiliation(s)
- Fuad Ale Enriquez
- Bioproducts, Sciences, and Engineering Laboratory, Washington State University, Tri-Cities, Richland, Washington, USA
- The Gene and Linda Voiland School of Chemical Engineering and Bioengineering, Washington State University, Pullman, Washington, USA
| | - Birgitte K. Ahring
- Bioproducts, Sciences, and Engineering Laboratory, Washington State University, Tri-Cities, Richland, Washington, USA
- The Gene and Linda Voiland School of Chemical Engineering and Bioengineering, Washington State University, Pullman, Washington, USA
- Biological Systems Engineering Department, Washington State University, Pullman, Washington, USA
| |
Collapse
|
6
|
Preiner J, Steccari I, Oburger E, Wienkoop S. Rhizobium symbiosis improves amino acid and secondary metabolite biosynthesis of tungsten-stressed soybean ( Glycine max). FRONTIERS IN PLANT SCIENCE 2024; 15:1355136. [PMID: 38628363 PMCID: PMC11020092 DOI: 10.3389/fpls.2024.1355136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Accepted: 03/01/2024] [Indexed: 04/19/2024]
Abstract
The industrially important transition metal tungsten (W) shares certain chemical properties with the essential plant micronutrient molybdenum and inhibits the activity of molybdoenzymes such as nitrate reductase, impacting plant growth. Furthermore, tungsten appears to interfere with metabolic processes on a much wider scale and to trigger common heavy metal stress response mechanisms. We have previously found evidence that the tungsten stress response of soybeans (Glycine max) grown with symbiotically associated N2-fixing rhizobia (Bradyrhizobium japonicum) differs from that observed in nitrogen-fertilized soy plants. This study aimed to investigate how association with symbiotic rhizobia affects the primary and secondary metabolite profiles of tungsten-stressed soybean and whether changes in metabolite composition enhance the plant's resilience to tungsten. This comprehensive metabolomic and proteomic study presents further evidence that the tungsten-stress response of soybean plants is shaped by associated rhizobia. Symbiotically grown plants (N fix) were able to significantly increase the synthesis of an array of protective compounds such as phenols, polyamines, gluconic acid, and amino acids such as proline. This resulted in a higher antioxidant capacity, reduced root-to-shoot translocation of tungsten, and, potentially, also enhanced resilience of N fix plants compared to non-symbiotic counterparts (N fed). Taken together, our study revealed a symbiosis-specific metabolic readjustment in tungsten-stressed soybean plants and contributed to a deeper understanding of the mechanisms involved in the rhizobium-induced systemic resistance in response to heavy metals.
Collapse
Affiliation(s)
- Julian Preiner
- Molecular Systems Biology Unit, Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Irene Steccari
- Molecular Systems Biology Unit, Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Eva Oburger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences Vienna, Tulln, Austria
| | - Stefanie Wienkoop
- Molecular Systems Biology Unit, Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| |
Collapse
|
7
|
Arslan Topal EI, Öbek E, Topal M. Is Cladophora fracta an efficient tool of accumulating critical raw materials from wastewater and there a potential health risk of use of algae as organic fertilizer? INTERNATIONAL JOURNAL OF ENVIRONMENTAL HEALTH RESEARCH 2024; 34:1977-1994. [PMID: 37097044 DOI: 10.1080/09603123.2023.2203905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 04/12/2023] [Indexed: 05/03/2023]
Abstract
In this study investigation of accumulations of critical raw materials (cobalt (Co), antimony (Sb), vanadium (V), lanthanum (La) and tungsten (W)) from wastewater by using C. fracta were aimed. Besides, assessment of the potential health risks in terms of the use of organic fertilizer obtained from the macroalga to be harvested from the treatment were also aimed. Highest Co, Sb, V, La and W accumulations by algae in reactor were 125±6.2%, 201.25±10%, 318.18±15%, 357.97±18%, and 500±25%, respectively. When compared with control, Co, Sb, V, La and W in algae increased 2.25, 3.01, 4.18, 4.58, and 6 times, respectively. The algae was very high bioaccumulative for Co and La. Highest MPI was calculated as 3.94. Non-carcinogenic risk of CRMs according to different exposure types (ingestion, inhalation, and dermal) were calculated for man, woman and child. There is not any non-carcinogenic risk from the investigated exposure ways of algae as organic fertilizer.
Collapse
Affiliation(s)
- E Işıl Arslan Topal
- Department of Environmental Engineering, Faculty of Engineering, Firat University, Elazığ, Turkey
| | - Erdal Öbek
- Department of Bioengineering, Faculty of Engineering, Firat University, Elazığ, Turkey
| | - Murat Topal
- Department of Chemistry Processing Technologies, Tunceli Vocation School, Munzur University, Tunceli, Turkey
| |
Collapse
|
8
|
Min J, Jung Y, Ahn J, Lee JG, Lee J, Ko SH. Recent Advances in Biodegradable Green Electronic Materials and Sensor Applications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2211273. [PMID: 36934454 DOI: 10.1002/adma.202211273] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 03/16/2023] [Indexed: 06/18/2023]
Abstract
As environmental issues have become the dominant agenda worldwide, the necessity for more environmentally friendly electronics has recently emerged. Accordingly, biodegradable or nature-derived materials for green electronics have attracted increased interest. Initially, metal-green hybrid electronics are extensively studied. Although these materials are partially biodegradable, they have high utility owing to their metallic components. Subsequently, carbon-framed materials (such as graphite, cylindrical carbon nanomaterials, graphene, graphene oxide, laser-induced graphene) have been investigated. This has led to the adoption of various strategies for carbon-based materials, such as blending them with biodegradable materials. Moreover, various conductive polymers have been developed and researchers have studied their potential use in green electronics. Researchers have attempted to fabricate conductive polymer composites with high biodegradability by shortening the polymer chains. Furthermore, various physical, chemical, and biological sensors that are essential to modern society have been studied using biodegradable compounds. These recent advances in green electronics have paved the way toward their application in real life, providing a brighter future for society.
Collapse
Affiliation(s)
- JinKi Min
- Applied Nano and Thermal Science Lab, Department of Mechanical Engineering, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
| | - Yeongju Jung
- Applied Nano and Thermal Science Lab, Department of Mechanical Engineering, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
| | - Jiyong Ahn
- Applied Nano and Thermal Science Lab, Department of Mechanical Engineering, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
| | - Jae Gun Lee
- Applied Nano and Thermal Science Lab, Department of Mechanical Engineering, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
| | - Jinwoo Lee
- Department of Mechanical, Robotics, and Energy Engineering, Dongguk University, 30 Pildong-ro 1-gil, Jung-gu, Seoul, 04620, Republic of Korea
| | - Seung Hwan Ko
- Applied Nano and Thermal Science Lab, Department of Mechanical Engineering, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
- Institute of Engineering Research/Institute of Advanced Machinery and Design (SNU-IAMD), Seoul National University, Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea
| |
Collapse
|
9
|
Hagen WR. The Development of Tungsten Biochemistry-A Personal Recollection. Molecules 2023; 28:molecules28104017. [PMID: 37241758 DOI: 10.3390/molecules28104017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 04/27/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023] Open
Abstract
The development of tungsten biochemistry is sketched from the viewpoint of personal participation. Following its identification as a bio-element, a catalogue of genes, enzymes, and reactions was built up. EPR spectroscopic monitoring of redox states was, and remains, a prominent tool in attempts to understand tungstopterin-based catalysis. A paucity of pre-steady-state data remains a hindrance to overcome to this day. Tungstate transport systems have been characterized and found to be very specific for W over Mo. Additional selectivity is presented by the biosynthetic machinery for tungstopterin enzymes. Metallomics analysis of hyperthermophilic archaeon Pyrococcus furiosus indicates a comprehensive inventory of tungsten proteins.
Collapse
Affiliation(s)
- Wilfred R Hagen
- Department of Biotechnology, Delft University of Technology, Building 58, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| |
Collapse
|
10
|
Qu YN, Rao YZ, Qi YL, Li YX, Li A, Palmer M, Hedlund BP, Shu WS, Evans PN, Nie GX, Hua ZS, Li WJ. Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum. Cell Rep 2023; 42:112158. [PMID: 36827180 DOI: 10.1016/j.celrep.2023.112158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 12/27/2022] [Accepted: 02/09/2023] [Indexed: 02/24/2023] Open
Abstract
The biology of Korarchaeia remains elusive due to the lack of genome representatives. Here, we reconstruct 10 closely related metagenome-assembled genomes from hot spring habitats and place them into a single species, proposed herein as Panguiarchaeum symbiosum. Functional investigation suggests that Panguiarchaeum symbiosum is strictly anaerobic and grows exclusively in thermal habitats by fermenting peptides coupled with sulfide and hydrogen production to dispose of electrons. Due to its inability to biosynthesize archaeal membranes, amino acids, and purines, this species likely exists in a symbiotic lifestyle similar to DPANN archaea. Population metagenomics and metatranscriptomic analyses demonstrated that genes associated with amino acid/peptide uptake and cell attachment exhibited positive selection and were highly expressed, supporting the proposed proteolytic catabolism and symbiotic lifestyle. Our study sheds light on the metabolism, evolution, and potential symbiotic lifestyle of Panguiarchaeum symbiosum, which may be a unique host-dependent archaeon within the TACK superphylum.
Collapse
Affiliation(s)
- Yan-Ni Qu
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China
| | - Yang-Zhi Rao
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China
| | - Yan-Ling Qi
- Chinese Academy of Sciences Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Yu-Xian Li
- Chinese Academy of Sciences Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Andrew Li
- Chinese Academy of Sciences Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Marike Palmer
- School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV 89154, USA
| | - Brian P Hedlund
- School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV 89154, USA; Nevada Institute of Personalized Medicine, University of Nevada Las Vegas, Las Vegas, NV 89154, USA
| | - Wen-Sheng Shu
- School of Life Sciences, South China Normal University, Guangzhou 510631, PR China
| | - Paul N Evans
- The Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD 4072, Australia
| | - Guo-Xing Nie
- College of Fisheries, Henan Normal University, Xinxiang, China
| | - Zheng-Shuang Hua
- Chinese Academy of Sciences Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China.
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, PR China.
| |
Collapse
|
11
|
Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus. mBio 2022; 13:e0244322. [PMID: 36409126 PMCID: PMC9765008 DOI: 10.1128/mbio.02443-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Some marine thermophilic methanogens are able to perform energy-consuming nitrogen fixation despite deriving only little energy from hydrogenotrophic methanogenesis. We studied this process in Methanothermococcus thermolithotrophicus DSM 2095, a methanogenic archaeon of the order Methanococcales that contributes to the nitrogen pool in some marine environments. We successfully grew this archaeon under diazotrophic conditions in both batch and fermenter cultures, reaching the highest cell density reported so far. Diazotrophic growth depended strictly on molybdenum and, in contrast to other diazotrophs, was not inhibited by tungstate or vanadium. This suggests an elaborate control of metal uptake and a specific metal recognition system for the insertion into the nitrogenase cofactor. Differential transcriptomics of M. thermolithotrophicus grown under diazotrophic conditions with ammonium-fed cultures as controls revealed upregulation of the nitrogenase machinery, including chaperones, regulators, and molybdate importers, as well as simultaneous upregulation of an ammonium transporter and a putative pathway for nitrate and nitrite utilization. The organism thus employs multiple synergistic strategies for uptake of nitrogen nutrients during the early exponential growth phase without altering transcription levels for genes involved in methanogenesis. As a counterpart, genes coding for transcription and translation processes were downregulated, highlighting the maintenance of an intricate metabolic balance to deal with energy constraints and nutrient limitations imposed by diazotrophy. This switch in the metabolic balance included unexpected processes, such as upregulation of the CRISPR-Cas system, probably caused by drastic changes in transcription levels of putative mobile and virus-like elements. IMPORTANCE The thermophilic anaerobic archaeon M. thermolithotrophicus is a particularly suitable model organism to study the coupling of methanogenesis to diazotrophy. Likewise, its capability of simultaneously reducing N2 and CO2 into NH3 and CH4 with H2 makes it a viable target for biofuel production. We optimized M. thermolithotrophicus cultivation, resulting in considerably higher cell yields and enabling the successful establishment of N2-fixing bioreactors. Improved understanding of the N2 fixation process would provide novel insights into metabolic adaptations that allow this energy-limited extremophile to thrive under diazotrophy, for instance, by investigating its physiology and uncharacterized nitrogenase. We demonstrated that diazotrophic growth of M. thermolithotrophicus is exclusively dependent on molybdenum, and complementary transcriptomics corroborated the expression of the molybdenum nitrogenase system. Further analyses of differentially expressed genes during diazotrophy across three cultivation time points revealed insights into the response to nitrogen limitation and the coordination of core metabolic processes.
Collapse
|
12
|
Tian X, Xie H, Li J, Cui L, Yu YL, Li B, Li YF. Nano-WSe 2 Is Absorbable and Transformable by Rice Plants. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27227826. [PMID: 36431926 PMCID: PMC9694913 DOI: 10.3390/molecules27227826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 11/10/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022]
Abstract
As typical transition metal dichalcogenides (TMDC), tungsten selenide (WSe2) nanosheets (nano-WSe2) are widely used in various fields due to their layered structures and highly tunable electronic and magnetic properties, which results in the unwanted release of tungsten (W) and selenium (Se) into the environment. However, the environmental effects of nano-WSe2 in plants are still unclear. Herein, we evaluated the impacts and fate of nano-WSe2 and micro-WSe2 in rice plants (Oryza sativa L.). It was found that both nano-WSe2 and micro-WSe2 did not affect the germination of rice seeds up to 5000 mg/L but nano-WSe2 affected the growth of rice seedlings with shortened root lengths. The uptake and transportation of WSe2 was found to be size-dependent. Moreover, W in WSe2 was oxidized to tungstate while Se was transformed to selenocysteine, selenomethionine, SeIV and SeVI in the roots of rice when exposed to nano-WSe2, suggesting the transformation of nano-WSe2 in rice plants. The exposure to nano-WSe2 brought lipid peroxidative damage to rice seedlings. However, Se in nano-WSe2 did not contribute to the synthesis of glutathione peroxidase (GSH-Px) since the latter did not change when exposed to nano-WSe2. This is the first report on the impacts and fate of nano-WSe2 in rice plants, which has raised environmental safety concerns about the wide application of TMDCs, such as WSe2 nanosheets.
Collapse
Affiliation(s)
- Xue Tian
- Department of Chemistry, College of Sciences, Northeastern University, Shenyang 110819, China
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, Beijing Metallomics Facility, National Consortium for Excellence in Metallomics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Hongxin Xie
- Department of Chemistry, College of Sciences, Northeastern University, Shenyang 110819, China
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, Beijing Metallomics Facility, National Consortium for Excellence in Metallomics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Jincheng Li
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, Beijing Metallomics Facility, National Consortium for Excellence in Metallomics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Liwei Cui
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yong-Liang Yu
- Department of Chemistry, College of Sciences, Northeastern University, Shenyang 110819, China
- Correspondence: (Y.-L.Y.); (Y.-F.L.); Tel.: +86-24-83688944 (Y.-L.Y.); +86-10-88233908 (Y.-F.L.)
| | - Bai Li
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, Beijing Metallomics Facility, National Consortium for Excellence in Metallomics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
| | - Yu-Feng Li
- CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, Beijing Metallomics Facility, National Consortium for Excellence in Metallomics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Correspondence: (Y.-L.Y.); (Y.-F.L.); Tel.: +86-24-83688944 (Y.-L.Y.); +86-10-88233908 (Y.-F.L.)
| |
Collapse
|
13
|
Mendel RR. The History of the Molybdenum Cofactor-A Personal View. Molecules 2022; 27:4934. [PMID: 35956883 PMCID: PMC9370521 DOI: 10.3390/molecules27154934] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 07/26/2022] [Accepted: 07/28/2022] [Indexed: 11/16/2022] Open
Abstract
The transition element molybdenum (Mo) is an essential micronutrient for plants, animals, and microorganisms, where it forms part of the active center of Mo enzymes. To gain biological activity in the cell, Mo has to be complexed by a pterin scaffold to form the molybdenum cofactor (Moco). Mo enzymes and Moco are found in all kingdoms of life, where they perform vital transformations in the metabolism of nitrogen, sulfur, and carbon compounds. In this review, I recall the history of Moco in a personal view, starting with the genetics of Moco in the 1960s and 1970s, followed by Moco biochemistry and the description of its chemical structure in the 1980s. When I review the elucidation of Moco biosynthesis in the 1990s and the early 2000s, I do it mainly for eukaryotes, as I worked with plants, human cells, and filamentous fungi. Finally, I briefly touch upon human Moco deficiency and whether there is life without Moco.
Collapse
Affiliation(s)
- Ralf R Mendel
- Institute of Plant Biology, Technical University Braunschweig, Humboldtstrasse 1, 38106 Braunschweig, Germany
| |
Collapse
|
14
|
Winiarska A, Hege D, Gemmecker Y, Kryściak-Czerwenka J, Seubert A, Heider J, Szaleniec M. Tungsten Enzyme Using Hydrogen as an Electron Donor to Reduce Carboxylic Acids and NAD . ACS Catal 2022; 12:8707-8717. [PMID: 35874620 PMCID: PMC9295118 DOI: 10.1021/acscatal.2c02147] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
Tungsten-dependent
aldehyde oxidoreductases (AORs) catalyze the
oxidation of aldehydes to acids and are the only known enzymes reducing
non-activated acids using electron donors with low redox potentials.
We report here that AOR from Aromatoleum aromaticum (AORAa) catalyzes the reduction of organic
acids not only with low-potential Eu(II) or Ti(III) complexes but
also with H2 as an electron donor. Additionally, AORAa catalyzes the H2-dependent reduction
of NAD+ or benzyl viologen. The rate of H2-dependent
NAD+ reduction equals to 10% of that of aldehyde oxidation,
representing the highest H2 turnover rate observed among
the Mo/W enzymes. As AORAa simultaneously
catalyzes the reduction of acids and NAD+, we designed
a cascade reaction utilizing a NAD(P)H-dependent alcohol dehydrogenase
to reduce organic acids to the corresponding alcohols with H2 as the only reductant. The newly discovered W-hydrogenase side activity
of AORAa may find applications in either
NADH recycling or conversion of carboxylic acids to more useful biochemicals.
Collapse
Affiliation(s)
- Agnieszka Winiarska
- Jerzy Haber Institute of Catalysis and Surface Chemistry Polish Academy of Sciences, Kraków 30-239, Poland
| | - Dominik Hege
- Faculty of Biology, Philipps-Universität Marburg, Marburg D-35043, Germany
| | - Yvonne Gemmecker
- Faculty of Biology, Philipps-Universität Marburg, Marburg D-35043, Germany
| | - Joanna Kryściak-Czerwenka
- Jerzy Haber Institute of Catalysis and Surface Chemistry Polish Academy of Sciences, Kraków 30-239, Poland
| | - Andreas Seubert
- Faculty of Chemistry, Philipps-Universität Marburg, Marburg D-35043, Germany
| | - Johann Heider
- Faculty of Biology, Philipps-Universität Marburg, Marburg D-35043, Germany.,Center for Synthetic Microbiology, Philipps-Universität Marburg, Marburg D-35043, Germany
| | - Maciej Szaleniec
- Jerzy Haber Institute of Catalysis and Surface Chemistry Polish Academy of Sciences, Kraków 30-239, Poland
| |
Collapse
|
15
|
Oliveira AR, Mota C, Klymanska K, Biaso F, Romão MJ, Guigliarelli B, Pereira IC. Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis. ACS Chem Biol 2022; 17:1901-1909. [PMID: 35766974 PMCID: PMC9774666 DOI: 10.1021/acschembio.2c00336] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Metal-dependent formate dehydrogenases are important enzymes due to their activity of CO2 reduction to formate. The tungsten-containing FdhAB formate dehydrogenase from Desulfovibrio vulgaris Hildenborough is a good example displaying high activity, simple composition, and a notable structural and catalytic robustness. Here, we report the first spectroscopic redox characterization of FdhAB metal centers by EPR. Titration with dithionite or formate leads to reduction of three [4Fe-4S]1+ clusters, and full reduction requires Ti(III)-citrate. The redox potentials of the four [4Fe-4S]1+ centers range between -250 and -530 mV. Two distinct WV signals were detected, WDV and WFV, which differ in only the g2-value. This difference can be explained by small variations in the twist angle of the two pyranopterins, as determined through DFT calculations of model compounds. The redox potential of WVI/V was determined to be -370 mV when reduced by dithionite and -340 mV when reduced by formate. The crystal structure of dithionite-reduced FdhAB was determined at high resolution (1.5 Å), revealing the same structural alterations as reported for the formate-reduced structure. These results corroborate a stable six-ligand W coordination in the catalytic intermediate WV state of FdhAB.
Collapse
Affiliation(s)
- Ana Rita Oliveira
- Instituto
de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
| | - Cristiano Mota
- Associate
Laboratory i4HB—Institute for Health and Bioeconomy, NOVA School
of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal,UCIBIO,
Applied Molecular Biosciences Unit, Departament of Chemistry, NOVA
School of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Kateryna Klymanska
- Associate
Laboratory i4HB—Institute for Health and Bioeconomy, NOVA School
of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal,UCIBIO,
Applied Molecular Biosciences Unit, Departament of Chemistry, NOVA
School of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Frédéric Biaso
- Laboratoire
de Bioénergétique et Ingénierie des Protéines, Aix Marseille Univ, CNRS, BIP, Marseille 13402, France
| | - Maria João Romão
- Associate
Laboratory i4HB—Institute for Health and Bioeconomy, NOVA School
of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal,UCIBIO,
Applied Molecular Biosciences Unit, Departament of Chemistry, NOVA
School of Science and Technology, Universidade
NOVA de Lisboa, 2829-516 Caparica, Portugal,
| | - Bruno Guigliarelli
- Laboratoire
de Bioénergétique et Ingénierie des Protéines, Aix Marseille Univ, CNRS, BIP, Marseille 13402, France,
| | - Inês Cardoso Pereira
- Instituto
de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal,
| |
Collapse
|
16
|
Synthesis, crystal structure, spectral characterization, theoretical studies, and investigation of catalytic activity in selective oxidation of sulfides by oxo-peroxo tungsten(VI) Schiff base complex. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132608] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
|
17
|
Huang XY, Hu DW, Zhao FJ. Molybdenum: More than an essential element. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1766-1774. [PMID: 34864981 DOI: 10.1093/jxb/erab534] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 12/03/2021] [Indexed: 06/13/2023]
Abstract
Molybdenum (Mo) is an essential element for almost all living organisms. After being taken up into the cells as molybdate, it is incorporated into the molybdenum cofactor, which functions as the active site of several molybdenum-requiring enzymes and thus plays crucial roles in multiple biological processes. The uptake and transport of molybdate is mainly mediated by two types of molybdate transporters. The homeostasis of Mo in plant cells is tightly controlled, and such homeostasis likely plays vital roles in plant adaptation to local environments. Recent evidence suggests that Mo is more than an essential element required for plant growth and development; it is also involved in local adaptation to coastal salinity. In this review, we summarize recent research progress on molybdate uptake and transport, molybdenum homeostasis network in plants, and discuss the potential roles of the molybdate transporter in plant adaptation to their local environment.
Collapse
Affiliation(s)
- Xin-Yuan Huang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Da-Wei Hu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| |
Collapse
|
18
|
González PJ, Rivas MG, Ferroni FM, Rizzi AC, Brondino CD. Electron transfer pathways and spin–spin interactions in Mo- and Cu-containing oxidoreductases. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.214202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
19
|
Chen K, Liu Y, Li M, Liu L, Yu Q, Wu L. Amelioration of enteric dysbiosis by polyoxotungstates in mice gut. J Inorg Biochem 2021; 226:111654. [PMID: 34740036 DOI: 10.1016/j.jinorgbio.2021.111654] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 10/11/2021] [Accepted: 10/23/2021] [Indexed: 12/15/2022]
Abstract
Here we show that Preyssler-type polyoxotungstates (Preyssler-type POTs, [NaP5W30O110]-14) complexed with peptides can prevent the dysbiotic expansion of anaerobic bacteria of the Enterobacteriaceae family. In a dextran sulfate sodium (DSS)-induced colitis model, symptom remission of C57BL/6 J mice with colitis is achieved by orally treated with POT complexes. Ten days of daily administration of POT complexes reduces 5% body weight loss and the mRNA levels of proinflammatory markers (77% reduction for Il6, 73% reduction for Tnf, 91% reduction for Cxcl1) in the caecum and proximal colon. Bacterial population analysis reveals that these Enterobacteriaceae population in the caecal content decline by one order of magnitude after administration of POT complexes. POT complexes exert anti-inflammatory effects indirectly on the host immune system by inhibition of malignant expansion of anaerobic Enterobacteriaceae during gut inflammation. Furthermore, POTs show negligible effect on bacterial growth in vitro, healthy mice and their microbiota composition under homeostatic conditions. Rationally designed POT complexes will provide distinctive approach to improve enteric bacteria dysbiosis-associated gut inflammation by balancing bacterial communities.
Collapse
Affiliation(s)
- Kun Chen
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Functional and Intelligent Hybrid Materials and Devices, South China University of Technology, Guangzhou 510640, China.
| | - Yuan Liu
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Functional and Intelligent Hybrid Materials and Devices, South China University of Technology, Guangzhou 510640, China
| | - Mu Li
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Lu Liu
- Guangdong Provincial Key Laboratory of Functional and Intelligent Hybrid Materials and Devices, South China University of Technology, Guangzhou 510640, China
| | - Qiang Yu
- South China Advanced Institute for Soft Matter Science and Technology, School of Molecular Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Long Wu
- Key Laboratory of Food Nutrition and Functional Food of Hainan Province, College of Food Science and Engineering, Hainan University, Haikou, Hainan, 570228, China.
| |
Collapse
|
20
|
Hollmann F, Opperman DJ, Paul CE. Biocatalytic Reduction Reactions from a Chemist's Perspective. Angew Chem Int Ed Engl 2021; 60:5644-5665. [PMID: 32330347 PMCID: PMC7983917 DOI: 10.1002/anie.202001876] [Citation(s) in RCA: 84] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Indexed: 11/09/2022]
Abstract
Reductions play a key role in organic synthesis, producing chiral products with new functionalities. Enzymes can catalyse such reactions with exquisite stereo-, regio- and chemoselectivity, leading the way to alternative shorter classical synthetic routes towards not only high-added-value compounds but also bulk chemicals. In this review we describe the synthetic state-of-the-art and potential of enzymes that catalyse reductions, ranging from carbonyl, enone and aromatic reductions to reductive aminations.
Collapse
Affiliation(s)
- Frank Hollmann
- Department of BiotechnologyDelft University of TechnologyVan der Maasweg 92629 HZDelftThe Netherlands
- Department of BiotechnologyUniversity of the Free State205 Nelson Mandela DriveBloemfontein9300South Africa
| | - Diederik J. Opperman
- Department of BiotechnologyUniversity of the Free State205 Nelson Mandela DriveBloemfontein9300South Africa
| | - Caroline E. Paul
- Department of BiotechnologyDelft University of TechnologyVan der Maasweg 92629 HZDelftThe Netherlands
| |
Collapse
|
21
|
Dawood MFA, Azooz MM. Insights into the oxidative status and antioxidative responses of germinating broccoli (Brassica oleracea var. italica L.) seeds in tungstate contaminated water. CHEMOSPHERE 2020; 261:127585. [PMID: 32739687 DOI: 10.1016/j.chemosphere.2020.127585] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 06/18/2020] [Accepted: 06/29/2020] [Indexed: 05/25/2023]
Abstract
The utilization of tungsten in traffic, smelting, mining, and other industrial applications allows its' accumulation in the environmental ecosystems. The present study included using a soluble form of tungsten (tungstate) at different levels (0, 1, 5, 10, 50, and 100 mg L-1) as a water contaminant. The germinating seeds experienced tungstate at 1-50 mg L-1 exhibited stimulation of seedling dry and fresh matter stress tolerance indices, whereas retardation of these traits at the level of 100 mg L-1 was manifested. The stimulation of seedling growth at the levels of 1-50 mg L-1 was associated with the regulation of reactive oxygen status, higher stability of cell membrane, and elevated level of antioxidative responses. Regarding the oxidative stress of the seedlings exposed to tungstate contaminated water, only the concentration of 100 mg L-1 induced accumulation of hydrogen peroxide, superoxide anion, and hydroxyl radical with apparent membrane deteriorations in terms of lipid peroxidation. Furthermore, reductions of phytochelatins, reduced glutathione, ascorbate, ascorbate peroxidase, glutathione peroxidase, as well as glutathione-S-transferase were the main symptoms of tungstate phytotoxicity at the same level. The accumulation of lignin, ionic peroxidase, soluble peroxidase, and lignin-related enzymes (phenylalanine ammonia-lyase and polyphenol oxidase) were the striking reasons for restricting seedlings growth at noxious tungstate level. The results could suggest that the elevated levels of defense systems, at least in part, were accountable for raising broccoli resistance against tungstate stress at low doses. Furthermore, these plants can grow in tungsten-polluted areas by modifying their physiological processes. However, this study shed the light to the eco-toxicity of tungstate and imparts evidence for the need to establishing environmental risk management of tungstate accumulation.
Collapse
Affiliation(s)
- Mona F A Dawood
- Botany and Microbiology Department, Faculty of Science, Assiut University, 71516, Assiut, Egypt.
| | - Mohamed M Azooz
- Botany and Microbiology Department, Faculty of Science, South Valley University, 83523, Qena, Egypt
| |
Collapse
|
22
|
Hollmann F, Opperman DJ, Paul CE. Biokatalytische Reduktionen aus der Sicht eines Chemikers. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202001876] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Frank Hollmann
- Department of Biotechnology Delft University of Technology Van der Maasweg 9 2629 HZ Delft Niederlande
- Department of Biotechnology University of the Free State 205 Nelson Mandela Drive Bloemfontein 9300 Südafrika
| | - Diederik J. Opperman
- Department of Biotechnology University of the Free State 205 Nelson Mandela Drive Bloemfontein 9300 Südafrika
| | - Caroline E. Paul
- Department of Biotechnology Delft University of Technology Van der Maasweg 9 2629 HZ Delft Niederlande
| |
Collapse
|
23
|
Vidovič C, Belaj F, Mösch‐Zanetti NC. Soft Scorpionate Hydridotris(2-mercapto-1-methylimidazolyl) borate) Tungsten-Oxido and -Sulfido Complexes as Acetylene Hydratase Models. Chemistry 2020; 26:12431-12444. [PMID: 32640122 PMCID: PMC7589279 DOI: 10.1002/chem.202001127] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 06/05/2020] [Indexed: 11/08/2022]
Abstract
A series of WIV alkyne complexes with the sulfur-rich ligand hydridotris(2-mercapto-1-methylimidazolyl) borate) (TmMe ) are presented as bio-inspired models to elucidate the mechanism of the tungstoenzyme acetylene hydratase (AH). The mono- and/or bis-alkyne precursors were reacted with NaTmMe and the resulting complexes [W(CO)(C2 R2 )(TmMe )Br] (R=H 1, Me 2) oxidized to the target [WE(C2 R2 )(TmMe )Br] (E=O, R=H 4, Me 5; E=S, R=H 6, Me 7) using pyridine-N-oxide and methylthiirane. Halide abstraction with TlOTf in MeCN gave the cationic complexes [WE(C2 R2 )(MeCN)(TmMe )](OTf) (E=CO, R=H 10, Me 11; E=O, R=H 12, Me 13; E=S, R=H 14, Me 15). Without MeCN, dinuclear complexes [W2 O(μ-O)(C2 Me2 )2 (TmMe )2 ](OTf)2 (8) and [W2 (μ-S)2 (C2 Me2 )(TmMe )2 ](OTf)2 (9) could be isolated showing distinct differences between the oxido and sulfido system with the latter exhibiting only one molecule of C2 Me2 . This provides evidence that a fine balance of the softness at W is important for acetylene coordination. Upon dissolving complex 8 in acetonitrile complex 13 is reconstituted in contrast to 9. All complexes exhibit the desired stability toward water and the observed effective coordination of the scorpionate ligand avoids decomposition to disulfide, an often-occurring reaction in sulfur ligand chemistry. Hence, the data presented here point toward a mechanism with a direct coordination of acetylene in the active site and provide the basis for further model chemistry for acetylene hydratase.
Collapse
Affiliation(s)
- Carina Vidovič
- University of GrazInstitute of ChemistryDepartment of Inorganic ChemistrySchuberstraße 18010GrazAustria
| | - Ferdinand Belaj
- University of GrazInstitute of ChemistryDepartment of Inorganic ChemistrySchuberstraße 18010GrazAustria
| | - Nadia C. Mösch‐Zanetti
- University of GrazInstitute of ChemistryDepartment of Inorganic ChemistrySchuberstraße 18010GrazAustria
| |
Collapse
|
24
|
Abstract
Tungsten is the heaviest element used in biological systems. It occurs in the active sites of several bacterial or archaeal enzymes and is ligated to an organic cofactor (metallopterin or metal binding pterin; MPT) which is referred to as tungsten cofactor (Wco). Wco-containing enzymes are found in the dimethyl sulfoxide reductase (DMSOR) and the aldehyde:ferredoxin oxidoreductase (AOR) families of MPT-containing enzymes. Some depend on Wco, such as aldehyde oxidoreductases (AORs), class II benzoyl-CoA reductases (BCRs) and acetylene hydratases (AHs), whereas others may incorporate either Wco or molybdenum cofactor (Moco), such as formate dehydrogenases, formylmethanofuran dehydrogenases or nitrate reductases. The obligately tungsten-dependent enzymes catalyze rather unusual reactions such as ones with extremely low-potential electron transfers (AOR, BCR) or an unusual hydration reaction (AH). In recent years, insights into the structure and function of many tungstoenzymes have been obtained. Though specific and unspecific ABC transporter uptake systems have been described for tungstate and molybdate, only little is known about further discriminative steps in Moco and Wco biosynthesis. In bacteria producing Moco- and Wco-containing enzymes simultaneously, paralogous isoforms of the metal insertase MoeA may be specifically involved in the molybdenum- and tungsten-insertion into MPT, and in targeting Moco or Wco to their respective apo-enzymes. Wco-containing enzymes are of emerging biotechnological interest for a number of applications such as the biocatalytic reduction of CO2, carboxylic acids and aromatic compounds, or the conversion of acetylene to acetaldehyde.
Collapse
|
25
|
Zhang Y, Zheng J. Bioinformatics of Metalloproteins and Metalloproteomes. Molecules 2020; 25:molecules25153366. [PMID: 32722260 PMCID: PMC7435645 DOI: 10.3390/molecules25153366] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 07/17/2020] [Accepted: 07/22/2020] [Indexed: 12/14/2022] Open
Abstract
Trace metals are inorganic elements that are required for all organisms in very low quantities. They serve as cofactors and activators of metalloproteins involved in a variety of key cellular processes. While substantial effort has been made in experimental characterization of metalloproteins and their functions, the application of bioinformatics in the research of metalloproteins and metalloproteomes is still limited. In the last few years, computational prediction and comparative genomics of metalloprotein genes have arisen, which provide significant insights into their distribution, function, and evolution in nature. This review aims to offer an overview of recent advances in bioinformatic analysis of metalloproteins, mainly focusing on metalloprotein prediction and the use of different metals across the tree of life. We describe current computational approaches for the identification of metalloprotein genes and metal-binding sites/patterns in proteins, and then introduce a set of related databases. Furthermore, we discuss the latest research progress in comparative genomics of several important metals in both prokaryotes and eukaryotes, which demonstrates divergent and dynamic evolutionary patterns of different metalloprotein families and metalloproteomes. Overall, bioinformatic studies of metalloproteins provide a foundation for systematic understanding of trace metal utilization in all three domains of life.
Collapse
Affiliation(s)
- Yan Zhang
- Shenzhen Key Laboratory of Marine Bioresources and Ecology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518055, China;
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen 518055, China
- Shenzhen Bay Laboratory, Shenzhen 518055, China
- Correspondence: ; Tel.: +86-755-2692-2024
| | - Junge Zheng
- Shenzhen Key Laboratory of Marine Bioresources and Ecology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518055, China;
- Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen 518055, China
- Shenzhen Bay Laboratory, Shenzhen 518055, China
| |
Collapse
|
26
|
Topal M, Öbek E, Arslan Topal EI. Performance of Cladophora fracta for Bioaccumulation of Critical Raw Materials from Mine Gallery Waters. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2020. [DOI: 10.1007/s13369-020-04522-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
27
|
Park JH, Han HJ. Effect of tungsten-resistant bacteria on uptake of tungsten by lettuce and tungsten speciation in plants. JOURNAL OF HAZARDOUS MATERIALS 2019; 379:120825. [PMID: 31279307 DOI: 10.1016/j.jhazmat.2019.120825] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Revised: 06/07/2019] [Accepted: 06/25/2019] [Indexed: 06/09/2023]
Abstract
Tungsten is an emerging contaminant because of its potential toxicity to humans. However, tungsten-plant-microbe interactions remains unknown. The objective of the study was to evaluate the effect of tungsten-resistant bacteria on tungsten species in plants and microbial community structure in soil. Although bacterial inoculation did not affect lettuce (Lactuca sativa L.) growth or tungsten uptake via root, tungsten-resistant bacteria increased translocation of tungsten from root to shoot. Bacterial inoculation slightly oxidized tungsten in lettuce based on tungsten L3 x-ray absorption near-edge structure (XANES). Tungsten in lettuce roots and shoots grown in tungsten(VI)-spiked soil existed as a mixture of tungsten(IV) and tungsten(VI). Tungsten accumulated as polytungstate in the root and monotungstate in the shoot. Inoculation with tungsten-resistant bacteria and plant growth increased microbial diversity in tungsten-contaminated soil. In tungsten-spiked soils without plants, metal-resistant or reducing bacteria were found while bacteria growing in rhizosphere were detected in soils supporting plant growth. These results indicate a role of the bacteria and plants in phytoremediation of tungsten-contaminated soil.
Collapse
Affiliation(s)
- Jin Hee Park
- Department of Environmental & Biological Chemistry, Chungbuk National University, Cheongju, Chungbuk 28644, Republic of Korea.
| | - Hyeop-Jo Han
- Department of Energy and Resources Engineering, Chonnam National University, Gwangju 61186, Republic of Korea
| |
Collapse
|
28
|
Coimbra C, Branco R, Morais PV. Efficient bioaccumulation of tungsten by Escherichia coli cells expressing the Sulfitobacter dubius TupBCA system. Syst Appl Microbiol 2019; 42:126001. [PMID: 31326140 DOI: 10.1016/j.syapm.2019.126001] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Revised: 07/05/2019] [Accepted: 07/09/2019] [Indexed: 01/30/2023]
Abstract
Tungsten (W) is a valuable element with considerable industrial and economic importance that belongs to the European Union list of critical metals with a high supply risk. Therefore, the development of effective and new methods for W recovery is essential to ensure a sustainable supply. In the present study, the Sulfitobacter dubius W transport system TupABC was explored in order to demonstrate both its functionality in Escherichia coli cells and to construct a bioaccumulator (EcotupW). The complete gene cluster tupBCA or partial gene cluster tupBC were cloned in an expression vector and transformed into E. coli. Metal accumulation was evaluated when each construct strain was grown with three separate metal oxyanions (tungstate, molybdate or chromate). The specificity of the bioaccumulator was determined by competition assays using cells grown with mixed solutions of metal oxyanions (W/Mo and W/Cr). The results showed the relevance of the TupA protein in the TupABC transporter system to W-uptake and also allowed Mo and Cr accumulations, although with amounts 1.7 and 2.9-fold lower than W, respectively. To identify the importance of the valine residue in the accumulation efficiency of the VTTS motif, site-directed mutagenesis of tupA was performed. A mutant with a threonine residue, instead of the respective valine, confirmed that W was internalized by nearly double the amount compared to the native form. The findings indicated that cells carrying the native S. dubius TupABC system were great W-bioaccumulators and could be promising tools for W recovery.
Collapse
Affiliation(s)
- C Coimbra
- CEMMPRE - Center of Mechanical Engineering, Materials and Processes, University of Coimbra, Coimbra, 3030-788, Portugal
| | - R Branco
- CEMMPRE - Center of Mechanical Engineering, Materials and Processes, University of Coimbra, Coimbra, 3030-788, Portugal; Department of Life Sciences, University of Coimbra, Coimbra, 3001-401, Portugal.
| | - P V Morais
- CEMMPRE - Center of Mechanical Engineering, Materials and Processes, University of Coimbra, Coimbra, 3030-788, Portugal; Department of Life Sciences, University of Coimbra, Coimbra, 3001-401, Portugal
| |
Collapse
|
29
|
Scott IM, Rubinstein GM, Poole FL, Lipscomb GL, Schut GJ, Williams-Rhaesa AM, Stevenson DM, Amador-Noguez D, Kelly RM, Adams MWW. The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis. J Biol Chem 2019; 294:9995-10005. [PMID: 31097544 DOI: 10.1074/jbc.ra118.007120] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 05/13/2019] [Indexed: 01/22/2023] Open
Abstract
Caldicellulosiruptor bescii is an extremely thermophilic, cellulolytic bacterium with a growth optimum at 78 °C and is the most thermophilic cellulose degrader known. It is an attractive target for biotechnological applications, but metabolic engineering will require an in-depth understanding of its primary pathways. A previous analysis of its genome uncovered evidence that C. bescii may have a completely uncharacterized aspect to its redox metabolism, involving a tungsten-containing oxidoreductase of unknown function. Herein, we purified and characterized this new member of the aldehyde ferredoxin oxidoreductase family of tungstoenzymes. We show that it is a heterodimeric glyceraldehyde-3-phosphate (GAP) ferredoxin oxidoreductase (GOR) present not only in all known Caldicellulosiruptor species, but also in 44 mostly anaerobic bacterial genera. GOR is phylogenetically distinct from the monomeric GAP-oxidizing enzyme found previously in several Archaea. We found that its large subunit (GOR-L) contains a single tungstopterin site and one iron-sulfur [4Fe-4S] cluster, that the small subunit (GOR-S) contains four [4Fe-4S] clusters, and that GOR uses ferredoxin as an electron acceptor. Deletion of either subunit resulted in a distinct growth phenotype on both C5 and C6 sugars, with an increased lag phase, but higher cell densities. Using metabolomics and kinetic analyses, we show that GOR functions in parallel with the conventional GAP dehydrogenase, providing an alternative ferredoxin-dependent glycolytic pathway. These two pathways likely facilitate the recycling of reduced redox carriers (NADH and ferredoxin) in response to environmental H2 concentrations. This metabolic flexibility has important implications for the future engineering of this and related species.
Collapse
Affiliation(s)
- Israel M Scott
- From the Department of Biochemistry and Molecular Biology and
| | | | - Farris L Poole
- From the Department of Biochemistry and Molecular Biology and
| | - Gina L Lipscomb
- From the Department of Biochemistry and Molecular Biology and
| | - Gerrit J Schut
- From the Department of Biochemistry and Molecular Biology and
| | | | - David M Stevenson
- the Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin 53706, and
| | - Daniel Amador-Noguez
- the Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin 53706, and
| | - Robert M Kelly
- the Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina 27695
| | | |
Collapse
|
30
|
Preiner J, Wienkoop S, Weckwerth W, Oburger E. Molecular Mechanisms of Tungsten Toxicity Differ for Glycine max Depending on Nitrogen Regime. FRONTIERS IN PLANT SCIENCE 2019; 10:367. [PMID: 31001297 PMCID: PMC6454624 DOI: 10.3389/fpls.2019.00367] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 03/08/2019] [Indexed: 05/06/2023]
Abstract
Tungsten (W) finds increasing application in military, aviation and household appliance industry, opening new paths into the environment. Since W shares certain chemical properties with the essential plant micronutrient molybdenum (Mo), it is proposed to inhibit enzymatic activity of molybdoenzymes [e.g., nitrate reductase (NR)] by replacing the Mo-ion bound to the co-factor. Recent studies suggest that W, much like other heavy metals, also exerts toxicity on its own. To create a comprehensive picture of tungsten stress, this study investigated the effects of W on growth and metabolism of soybean (Glycine max), depending on plant nitrogen regime [nitrate fed (N fed) vs. symbiotic N2 fixation (N fix)] by combining plant physiological data (biomass production, starch and nutrient content, N2 fixation, nitrate reductase activity) with root and nodule proteome data. Irrespective of N regime, NR activity and total N decreased with increasing W concentrations. Nodulation and therefore also N2 fixation strongly declined at high W concentrations, particularly in N fix plants. However, N2 fixation rate (g N fixed g-1 nodule dwt) remained unaffected by increasing W concentrations. Proteomic analysis revealed a strong decline in leghemoglobin and nitrogenase precursor levels (NifD), as well as an increase in abundance of proteins involved in secondary metabolism in N fix nodules. Taken together this indicates that, in contrast to the reported direct inhibition of NR, N2 fixation appears to be indirectly inhibited by a decrease in nitrogenase synthesis due to W induced changes in nodule oxygen levels of N fix plants. Besides N metabolism, plants exhibited a strong reduction of shoot (both N regimes) and root (N fed only) biomass, an imbalance in nutrient levels and a failure of carbon metabolic pathways accompanied by an accumulation of starch at high tungsten concentrations, independent of N-regime. Proteomic data (available via ProteomeXchange with identifier PXD010877) demonstrated that the response to high W concentrations was independent of nodule functionality and dominated by several peroxidases and other general stress related proteins. Based on an evaluation of several W responsive proteotypic peptides, we identified a set of protein markers of W stress and possible targets for improved stress tolerance.
Collapse
Affiliation(s)
- Julian Preiner
- Division of Molecular Systems Biology, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences Vienna, Tulln, Austria
| | - Stefanie Wienkoop
- Division of Molecular Systems Biology, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Wolfram Weckwerth
- Division of Molecular Systems Biology, Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Eva Oburger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences Vienna, Tulln, Austria
- Division of Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| |
Collapse
|
31
|
Guo Q, Li Y, Luo L. Tungsten from typical magmatic hydrothermal systems in China and its environmental transport. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 657:1523-1534. [PMID: 30677918 DOI: 10.1016/j.scitotenv.2018.12.146] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 11/27/2018] [Accepted: 12/10/2018] [Indexed: 06/09/2023]
Abstract
Tungsten is of extraordinarily high concentrations in the geothermal waters discharging from several representative Tibetan magmatic hydrothermal systems (up to 1103 μg/L), which are also characterized by exceptionally high W/Mo molar ratios (up to 1182). The geochemical origins of the tungsten in these geothermal waters were investigated, with a comparison to those from Rehai, the sole magmatic hydrothermal system in Yunnan, which is another major part of the Yunnan-Sichuan-Tibet Geothermal Province of China. The results show that the lithology of reservoir host rocks is the primary factor controlling the tungsten concentrations of the geothermal waters, although the contribution of magmatic fluid input cannot be ruled out. In this study, the geothermal waters are generally rich in sulfide, and therefore the molybdenum in the reservoir fluids has been substantially precipitated as the form of molybdenite; in contrast, the reservoir fluids are well undersaturated with respect to tungstenite which is much more soluble than molybdenite. Thus the neutral/alkaline hot springs, i.e. the evolved reservoir fluids, have high W/Mo molar ratios as well. In the hot spring sediments, the distribution pattern of tungsten is quite different. The concentrations of tungsten are the highest in the sediments with high iron concentrations collected from the acid hot spring vents and outflow channels. The adsorption of aqueous tungsten onto iron-bearing minerals, like goethite or pyrite, is favorable at acid pH values and thereby responsible for the very high tungsten concentrations of these acid hot spring sediments. The proportions of thiotungstates in total tungsten are quite low for all the hot springs, as indicated by thermodynamic calculations, suggesting that thiolation of tungstate has little impacts on the environmental transport and fate of geothermal tungsten in the investigated hydrothermal areas. This is the first study to report the tungsten geochemistry of hot springs in mainland China.
Collapse
Affiliation(s)
- Qinghai Guo
- State Key Laboratory of Biogeology and Environmental Geology, School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, PR China.
| | - Yumei Li
- State Key Laboratory of Biogeology and Environmental Geology, School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, PR China
| | - Li Luo
- State Key Laboratory of Biogeology and Environmental Geology, School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, PR China
| |
Collapse
|
32
|
Rajeev L, Garber ME, Zane GM, Price MN, Dubchak I, Wall JD, Novichkov PS, Mukhopadhyay A, Kazakov AE. A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport. Environ Microbiol 2019; 21:784-799. [PMID: 30536693 DOI: 10.1111/1462-2920.14500] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 12/03/2018] [Accepted: 12/07/2018] [Indexed: 11/30/2022]
Abstract
Bacterial genes for molybdenum-containing and tungsten-containing enzymes are often differentially regulated depending on the metal availability in the environment. Here, we describe a new family of transcription factors with an unusual DNA-binding domain related to excisionases of bacteriophages. These transcription factors are associated with genes for various molybdate and tungstate-specific transporting systems as well as molybdo/tungsto-enzymes in a wide range of bacterial genomes. We used a combination of computational and experimental techniques to study a member of the TF family, named TaoR (for tungsten-containing aldehyde oxidoreductase regulator). In Desulfovibrio vulgaris Hildenborough, a model bacterium for sulfate reduction studies, TaoR activates expression of aldehyde oxidoreductase aor and represses tungsten-specific ABC-type transporter tupABC genes under tungsten-replete conditions. TaoR binding sites at aor promoter were identified by electrophoretic mobility shift assay and DNase I footprinting. We also reconstructed TaoR regulons in 45 Deltaproteobacteria by comparative genomics approach and predicted target genes for TaoR family members in other Proteobacteria and Firmicutes.
Collapse
Affiliation(s)
- L Rajeev
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - M E Garber
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Department of Comparative Biochemistry, University of California, Berkeley, CA, 94720, USA
| | - G M Zane
- Biochemistry and Molecular Microbiology & Immunology Department, University of Missouri, Columbia, MO, 65211, USA
| | - M N Price
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - I Dubchak
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - J D Wall
- Biochemistry and Molecular Microbiology & Immunology Department, University of Missouri, Columbia, MO, 65211, USA
| | - P S Novichkov
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Department of Energy, Knowledge Base, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - A Mukhopadhyay
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Department of Comparative Biochemistry, University of California, Berkeley, CA, 94720, USA.,Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - A E Kazakov
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| |
Collapse
|
33
|
|
34
|
Keighley D, Boonsue S, Hall D. Phosphatized tungsten-metabolizing coccoid microbes interpreted from oil shale of an Eocene lake, Green River Formation, Utah, USA. GEOBIOLOGY 2018; 16:610-627. [PMID: 30102836 DOI: 10.1111/gbi.12310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 06/06/2018] [Accepted: 06/11/2018] [Indexed: 06/08/2023]
Abstract
Microscopic globular structures have been observed in some beds of oil shale from eastern Utah. These beds comprise carbonate-dominated mud that is interlaminated with variably thick and continuous organic-rich layers. Collectively they are enriched in phosphorus, REEs, and actinides. The beds are considered of lacustrine origin and assigned to the Eocene Green River Formation. The globules themselves are of microcrystalline carbonate fluorapatite (μCFA), often contain concentric internal structures, and usually group together in clusters of up to 80, possibly more. Detailed SEM and microprobe analyses have revealed tungsten (W) to be almost exclusively associated with the globular clusters found within the more organic-rich laminae, often at concentrations of over 200 ppm, two orders of magnitude above shale standards. The globular structures are present in freshly cut sections where they occasionally grade into a μCFA matrix cement. This, together with the draping of the clusters by stringers of organic matter that would have accumulated in the Eocene lake, confirms that the structures are not a contaminant. The limited range of sizes and globular shapes is consistent with the morphology of coccoidal bacteria: Concentric internal structures may represent remnants of the nucleoid and cell wall. Paired concentric structures may indicate cell division (reproduction) processes were occurring until mineralization. The phosphate mineralization itself may have been promoted by release of phosphate from the stressed cells, bringing porewaters to supersaturation, or by the cells acting as nucleation sites. The recording of trace amounts of W almost exclusively in globular clusters preserved in the most organic-rich stringers (anoxia prone) further suggests facultative use of W-enzymes in a microbial metabolism. Combined, their context, morphology, and indication of biogenic process are strong evidence that the structures are fossilized (phosphatized) microbes, possibly sulfate-reducing bacteria, or methanogenic archaea.
Collapse
Affiliation(s)
- Dave Keighley
- Department of Earth Sciences, University of New Brunswick, Fredericton, New Brunswick, Canada
| | - Suporn Boonsue
- Planetary and Space Science Centre, University of New Brunswick, Fredericton, New Brunswick, Canada
| | - Douglas Hall
- Microscopy and Microanalysis Facility, University of New Brunswick, Fredericton, New Brunswick, Canada
| |
Collapse
|
35
|
Bagherzadeh M, Esmailpour P, Abbasi A, Akbari A, Amini M. Synthesis, crystal structure and catalytic activity of an oxo-diperoxo tungsten(VI) complex containing an oxazine ligand for selective oxidation of sulfides. J COORD CHEM 2018. [DOI: 10.1080/00958972.2018.1519185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
| | | | - Alireza Abbasi
- School of Chemistry, College of Science, University of Tehran, Tehran, Iran
| | - Ali Akbari
- Department of Chemistry, Faculty of Science, University of Maragheh, Maragheh, Iran
| | - Mojtaba Amini
- Department of Chemistry, Faculty of Science, University of Maragheh, Maragheh, Iran
| |
Collapse
|
36
|
Peng T, Xu Y, Zhang Y. Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes. BMC Genomics 2018; 19:691. [PMID: 30231876 PMCID: PMC6147048 DOI: 10.1186/s12864-018-5068-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 09/11/2018] [Indexed: 01/14/2023] Open
Abstract
BACKGROUND Molybdenum (Mo) is an essential micronutrient for almost all biological systems, which holds key positions in several enzymes involved in carbon, nitrogen and sulfur metabolism. In general, this transition metal needs to be coordinated to a unique pterin, thus forming a prosthetic group named molybdenum cofactor (Moco) at the catalytic sites of molybdoenzymes. The biochemical functions of many molybdoenzymes have been characterized; however, comprehensive analyses of the evolution of Mo metabolism and molybdoproteomes are quite limited. RESULTS In this study, we analyzed almost 5900 sequenced organisms to examine the occurrence of the Mo utilization trait at the levels of Mo transport system, Moco biosynthetic pathway and molybdoproteins in all three domains of life. A global map of Moco biosynthesis and molybdoproteins has been generated, which shows the most detailed understanding of Mo utilization in prokaryotes and eukaryotes so far. Our results revealed that most prokaryotes and all higher eukaryotes utilize Mo whereas many unicellular eukaryotes such as parasites and most yeasts lost the ability to use this metal. By characterizing the molybdoproteomes of all organisms, we found many new molybdoprotein-rich species, especially in bacteria. A variety of new domain fusions were detected for different molybdoprotein families, suggesting the presence of novel proteins that are functionally linked to molybdoproteins or Moco biosynthesis. Moreover, horizontal gene transfer event involving both the Moco biosynthetic pathway and molybdoproteins was identified. Finally, analysis of the relationship between environmental factors and Mo utilization showed new evolutionary trends of the Mo utilization trait. CONCLUSIONS Our data provide new insights into the evolutionary history of Mo utilization in nature.
Collapse
Affiliation(s)
- Ting Peng
- Shenzhen Key Laboratory of Marine Bioresources and Ecology, College of Life Sciences and Oceanography, Shenzhen University, Guangdong Province, Shenzhen, 518060, China.,Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Yinzhen Xu
- Shenzhen Key Laboratory of Marine Bioresources and Ecology, College of Life Sciences and Oceanography, Shenzhen University, Guangdong Province, Shenzhen, 518060, China.,Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Yan Zhang
- Shenzhen Key Laboratory of Marine Bioresources and Ecology, College of Life Sciences and Oceanography, Shenzhen University, Guangdong Province, Shenzhen, 518060, China.
| |
Collapse
|
37
|
Qian HX, Liao RZ. QM/MM Study of Tungsten-Dependent Benzoyl-Coenzyme A Reductase: Rationalization of Regioselectivity and Predication of W vs Mo Selectivity. Inorg Chem 2018; 57:10667-10678. [DOI: 10.1021/acs.inorgchem.8b01328] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hui-Xia Qian
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Bioinorganic Chemistry and Materia Medica, Hubei Key Laboratory of Materials Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Rong-Zhen Liao
- Key Laboratory of Material Chemistry for Energy Conversion and Storage, Ministry of Education, Hubei Key Laboratory of Bioinorganic Chemistry and Materia Medica, Hubei Key Laboratory of Materials Chemistry and Service Failure, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| |
Collapse
|
38
|
An experimental and theoretical study of a heptacoordinated tungsten(VI) complex of a noninnocent phenylenediamine bis(phenolate) ligand. INORG CHEM COMMUN 2018. [DOI: 10.1016/j.inoche.2018.05.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
39
|
Oburger E, Vergara Cid C, Preiner J, Hu J, Hann S, Wanek W, Richter A. pH-Dependent Bioavailability, Speciation, and Phytotoxicity of Tungsten (W) in Soil Affect Growth and Molybdoenzyme Activity of Nodulated Soybeans. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:6146-6156. [PMID: 29701969 PMCID: PMC5990931 DOI: 10.1021/acs.est.7b06500] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 03/08/2018] [Accepted: 04/27/2018] [Indexed: 05/15/2023]
Abstract
Increasing use of tungsten (W)-based products opened new pathways for W into environmental systems. Due to its chemical alikeness with molybdenum (Mo), W is expected to behave similarly to its "twin element", Mo; however, our knowledge of the behavior of W in the plant-soil environment remains inadequate. The aim of this study was to investigate plant growth as well as W and nutrient uptake depending on soil chemical properties such as soil pH and texture. Soybean ( Glycine max cv. Primus) was grown on two acidic soils differing in soil texture that were either kept at their natural soil pH (pH of 4.5-5) or limed (pH of ≥7) and amended with increasing concentrations of metallic W (control and 500 and 5000 mg kg-1). In addition, the activity of molybdoenzymes involved in N assimilation (nitrate reductase) and symbiotic N2 fixation (nitrogenase) was also investigated. Our results showed that the risk of W entering the food web was significantly greater in high-pH soils due to increased solubility of mainly monomeric W. The effect of soil texture on W solubility and phytoavailability was less pronounced compared to soil pH. Particularly at intermediate W additions (W 500 mg kg-1), symbiotic nitrogen fixation was able to compensate for reduced leaf nitrate reductase activity. When W soil solution concentrations became too toxic (W 5000 mg kg-1), nodulation was more strongly inhibited than nitrogenase activity in the few nodules formed, suggesting a more-efficient detoxification and compartmentalization mechanism in nodules than in soybean leaves. The increasing presence of polymeric W species observed in low-pH soils spiked with high W concentrations resulted in decreased W uptake. Simultaneously, polymeric W species had an overall negative effect on nutrient assimilation and plant growth, suggesting a greater phytotoxicity of W polymers. Our study demonstrates the importance of accounting for soil pH in risk assessment studies of W in the plant-soil environment, something that has been completely neglected in the past.
Collapse
Affiliation(s)
- Eva Oburger
- Department of Microbiology and Ecosystem Science, Division of Terrestrial
Ecosystem Research and Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
- BOKU,
Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences, Konrad-Lorenz Strasse 24, A-3430 Tulln, Austria
| | - Carolina Vergara Cid
- BOKU,
Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences, Konrad-Lorenz Strasse 24, A-3430 Tulln, Austria
- Faculty
of Physical and Natural Sciences, Multidisciplinary Institute of Plant
Biology, Pollution and Bioindicator Section, National University of Cordoba, Avenida Velez Sarsfield 1611, X5016CGA Cordoba, Argentina
| | - Julian Preiner
- Department of Microbiology and Ecosystem Science, Division of Terrestrial
Ecosystem Research and Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
- BOKU,
Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences, Konrad-Lorenz Strasse 24, A-3430 Tulln, Austria
| | - Junjian Hu
- BOKU,
Department of Chemistry, University of Natural
Resources and Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
| | - Stephan Hann
- BOKU,
Department of Chemistry, University of Natural
Resources and Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, Division of Terrestrial
Ecosystem Research and Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| | - Andreas Richter
- Department of Microbiology and Ecosystem Science, Division of Terrestrial
Ecosystem Research and Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| |
Collapse
|
40
|
Gohr S, Hrobárik P, Kaupp M. Four-Component Relativistic Density Functional Calculations of EPR Parameters for Model Complexes of Tungstoenzymes. J Phys Chem A 2017; 121:9106-9117. [DOI: 10.1021/acs.jpca.7b08768] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sebastian Gohr
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Peter Hrobárik
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, 10623 Berlin, Germany
- Department
of Inorganic Chemistry, Faculty of Natural Sciences, Comenius University, Mlynská dolina CH-2, Ilkovičova 6, SK-84215 Bratislava, Slovakia
| | - Martin Kaupp
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, 10623 Berlin, Germany
| |
Collapse
|
41
|
Coimbra C, Farias P, Branco R, Morais PV. Tungsten accumulation by highly tolerant marine hydrothermal Sulfitobacter dubius strains carrying a tupBCA cluster. Syst Appl Microbiol 2017; 40:388-395. [DOI: 10.1016/j.syapm.2017.06.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2016] [Revised: 06/13/2017] [Accepted: 06/25/2017] [Indexed: 10/19/2022]
|
42
|
Affiliation(s)
- Wenhu Zhou
- Xiangya
School of Pharmaceutical Sciences, Central South University, Changsha, Hunan 410013, China
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Runjhun Saran
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Juewen Liu
- Department
of Chemistry, Water Institute, and Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| |
Collapse
|
43
|
Warelow TP, Pushie MJ, Cotelesage JJH, Santini JM, George GN. The active site structure and catalytic mechanism of arsenite oxidase. Sci Rep 2017; 7:1757. [PMID: 28496149 PMCID: PMC5432002 DOI: 10.1038/s41598-017-01840-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Accepted: 04/04/2017] [Indexed: 11/09/2022] Open
Abstract
Arsenite oxidase is thought to be an ancient enzyme, originating before the divergence of the Archaea and the Bacteria. We have investigated the nature of the molybdenum active site of the arsenite oxidase from the Alphaproteobacterium Rhizobium sp. str. NT-26 using a combination of X-ray absorption spectroscopy and computational chemistry. Our analysis indicates an oxidized Mo(VI) active site with a structure that is far from equilibrium. We propose that this is an entatic state imposed by the protein on the active site through relative orientation of the two molybdopterin cofactors, in a variant of the Rây-Dutt twist of classical coordination chemistry, which we call the pterin twist hypothesis. We discuss the implications of this hypothesis for other putatively ancient molybdopterin-based enzymes.
Collapse
Affiliation(s)
- Thomas P Warelow
- Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, United Kingdom
| | - M Jake Pushie
- Department of Anatomy and Cell Biology, University of Saskatchewan, Saskatoon, SK, S7N 5E5, Canada.,Molecular and Environmental Sciences Research Group, Department of Geological Sciences, University of Saskatchewan, SK, S7N 5E2, Canada
| | - Julien J H Cotelesage
- Molecular and Environmental Sciences Research Group, Department of Geological Sciences, University of Saskatchewan, SK, S7N 5E2, Canada
| | - Joanne M Santini
- Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, United Kingdom
| | - Graham N George
- Molecular and Environmental Sciences Research Group, Department of Geological Sciences, University of Saskatchewan, SK, S7N 5E2, Canada. .,Department of Chemistry, University of Saskatchewan, Saskatoon, SK, S7N 5C9, Canada.
| |
Collapse
|
44
|
Sproules S, Eagle AA, George GN, White JM, Young CG. Mononuclear Sulfido-Tungsten(V) Complexes: Completing the Tp*MEXY (M = Mo, W; E = O, S) Series. Inorg Chem 2017; 56:5189-5202. [DOI: 10.1021/acs.inorgchem.7b00331] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stephen Sproules
- WestCHEM, School of Chemistry, University of Glasgow, Glasgow G12 8QQ, United Kingdom
| | - Aston A. Eagle
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Graham N. George
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E2, Canada
| | - Jonathan M. White
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
- Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Charles G. Young
- Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
| |
Collapse
|
45
|
Jafari H, Zarei SA. Sulfur-rich nickel(II) complex: Synthesis, characterization, and X-ray crystal structure. INORG NANO-MET CHEM 2017. [DOI: 10.1080/15533174.2016.1186034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Hadi Jafari
- Department of Chemistry, Faculty of Science, Sanandaj Branch, Islamic Azad University, Sanandaj, Iran
| | - Seyed Amir Zarei
- Department of Chemistry, Faculty of Science, Sanandaj Branch, Islamic Azad University, Sanandaj, Iran
| |
Collapse
|
46
|
Maia LB, Moura I, Moura JJ. Molybdenum and tungsten-containing formate dehydrogenases: Aiming to inspire a catalyst for carbon dioxide utilization. Inorganica Chim Acta 2017. [DOI: 10.1016/j.ica.2016.07.010] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
47
|
Khatua S, Naskar T, Nandi C, Majumdar A. Mononuclear bis(dithiolene) Mo(iv) and W(iv) complexes with P,P; S,S; O,S and O,O donor ligands: a comparative reactivity study. NEW J CHEM 2017. [DOI: 10.1039/c7nj01797a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Comparative redox reactions of eight MoIV/WIVcomplexes with P,P; S,S; S,O and O,O donor ligands are presented.
Collapse
Affiliation(s)
- S. Khatua
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - T. Naskar
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - C. Nandi
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| | - A. Majumdar
- Department of Inorganic Chemistry
- Indian Association for the Cultivation of Science
- Kolkata 700032
- India
| |
Collapse
|
48
|
Boll M, Einsle O, Ermler U, Kroneck PMH, Ullmann GM. Structure and Function of the Unusual Tungsten Enzymes Acetylene Hydratase and Class II Benzoyl-Coenzyme A Reductase. J Mol Microbiol Biotechnol 2016; 26:119-37. [PMID: 26959374 DOI: 10.1159/000440805] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
In biology, tungsten (W) is exclusively found in microbial enzymes bound to a bis-pyranopterin cofactor (bis-WPT). Previously known W enzymes catalyze redox oxo/hydroxyl transfer reactions by directly coordinating their substrates or products to the metal. They comprise the W-containing formate/formylmethanofuran dehydrogenases belonging to the dimethyl sulfoxide reductase (DMSOR) family and the aldehyde:ferredoxin oxidoreductase (AOR) families, which form a separate enzyme family within the Mo/W enzymes. In the last decade, initial insights into the structure and function of two unprecedented W enzymes were obtained: the acetaldehyde forming acetylene hydratase (ACH) belongs to the DMSOR and the class II benzoyl-coenzyme A (CoA) reductase (BCR) to the AOR family. The latter catalyzes the reductive dearomatization of benzoyl-CoA to a cyclic diene. Both are key enzymes in the degradation of acetylene (ACH) or aromatic compounds (BCR) in strictly anaerobic bacteria. They are unusual in either catalyzing a nonredox reaction (ACH) or a redox reaction without coordinating the substrate or product to the metal (BCR). In organic chemical synthesis, analogous reactions require totally nonphysiological conditions depending on Hg2+ (acetylene hydration) or alkali metals (benzene ring reduction). The structural insights obtained pave the way for biological or biomimetic approaches to basic reactions in organic chemistry.
Collapse
Affiliation(s)
- Matthias Boll
- Fakultx00E4;t fx00FC;r Biologie/Mikrobiologie, Institut fx00FC;r Biochemie, Albert-Ludwigs-Universitx00E4;t Freiburg, Freiburg, Germany
| | | | | | | | | |
Collapse
|
49
|
Carrano CJ. A Family of Homo- and Heteroscorpionate Ligands: Applications to Bioinorganic Chemistry. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201501476] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Carl J. Carrano
- Department of Chemistry and Biochemistry; San Diego State University; 92182-1030 San Diego CA USA
| |
Collapse
|
50
|
Salojärvi E, Peuronen A, Sillanpää R, Damlin P, Kivelä H, Lehtonen A. Aminobisphenolate supported tungsten disulphido and dithiolene complexes. Dalton Trans 2016; 44:9409-16. [PMID: 25914124 DOI: 10.1039/c5dt00995b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dioxotungsten(vi) complexes with tetradentate amino bisphenolates were converted into the corresponding Cs-symmetric amino bisphenolate disulphido complexes by a reaction with either Lawesson's reagent or P2S5. Further reaction with diethyl acetylenedicarboxylate leads to the formation of diamagnetic tungsten(iv) dithiolene compounds. The syntheses, crystal structures, spectroscopic and electrochemical characterization of such disulphido and dithiolene complexes are presented.
Collapse
Affiliation(s)
- E Salojärvi
- Laboratory of Materials Chemistry and Chemical Analysis, Department of Chemistry, University of Turku, FI-20014, Turku, Finland.
| | | | | | | | | | | |
Collapse
|