Biosorption of heavy metals by obligate halophilic fungi

Comparative analysis of size-fractional eukaryotic microbes in subtropical riverine systems inferred from 18S rRNA gene V4 and V9 regions

Eukaryotic microbes play key ecological roles in riverine ecosystems. Amplicon sequencing has greatly facilitated the identification and characterization of eukaryotic microbial communities. Currently, 18S rRNA gene V4 and V9 hypervariable regions are widely used for sequencing eukaryotic microbes. Identifying optimal regions for the profiling of size-fractional eukaryotic microbial communities is critical for microbial ecological studies. In this study, we spanned three rivers with typical natural-human influenced transition gradients to evaluate the performance of the 18S rRNA gene V4 and V9 hypervariable regions for sequencing size-fractional eukaryotic microbes (>180 μm, 20-180 μm, 5-20 μm, 3-5 μm, 0.8-3 μm). Our comparative analysis revealed that amplicon results depend on the specific species and microbial size. The V9 region was most effective for detecting a broad taxonomic range of species. The V4 region was superior to the V9 region for the identification of microbes in the minor 3 μm and at the family and genus levels, especially for specific microbial groups, such as Labyrinthulomycetes. However, the V9 region was more effective for studies of diverse eukaryotic groups, including Archamoebae, Heterolobosea, and Microsporidia, and various algae, such as Haptophyta, Florideophycidae, and Bangiales. Our results highlight the importance of accounting for potential misclassifications when employing both V4 and V9 regions for the identification of microbial sequences. The use of optimal regions for amplification could enhance the utility of amplicon sequencing in environmental studies. The insights gained from this work will aid future studies that employ amplicon-based identification approaches for the characterization of eukaryotic microbial communities and contribute to our understanding of microbial ecology within aquatic systems.

Exploring the biosorption of nickel and lead by Fusarium sp. biomass: kinetic, isotherm, and thermodynamic assessment

Fungal biomass is as a cost-effective and sustainable biosorbent utilized in both active and inactive forms. This study investigated the efficacy of inactivated and dried biomass of Fusarium sp. in adsorbing Ni2+ and Pb2+ from aqueous solutions. The strain underwent sequential cultivation and was recovered by filtration. Then, the biomass was dried in an oven at 80 ± 2 °C and sieved using a 0.1-cm mesh. The biosorbent was thoroughly characterized, including BET surface area analysis, morphology examination (SEM), chemical composition (XRF and FT-IR), thermal behavior (TGA), and surface charge determination (pH-PZC and zeta potential). The biosorption mechanism was elucidated by fitting equilibrium models of kinetics, isotherm, and thermodynamic to the data. The biosorbent exhibited a neutral charge, a rough surface, a relatively modest surface area, appropriate functional groups for adsorption, and thermal stability above 200 °C. Optimal biosorption was achieved at 25 ± 2 °C, using 0.05 g of adsorbent per 50 mL of metallic ion solution at initial concentrations ranging from 0.5 to 2.0 mg L-1 and at pH 4.5 for Pb2+ and Ni2+. Biosorption equilibrium was achieved after 240 min for Ni2+ and 1440 min for Pb2+. The process was spontaneous, mainly through chemisorption, in monolayer for Ni2+ and multilayer for Pb2+, with efficiencies of over 85% for both metallic ion removal. These findings underscore the potential of inactive and dry Fusarium sp. biomass (IDFB) as a promising material for the biosorption of Ni2+ and Pb2+.

Unveiling heavy metal pollution dynamics in sediments of river Ulhas, Maharashtra, India: a comprehensive analysis of anthropogenic influence, pollution indices, and health risk assessment

Metals and metalloids tainting sediments is an eminent issue, predominantly in megacities like Mumbai and Navi Mumbai, requiring an exhaustive examination to identify metal levels in river bodies that serve various populations. Thus, utilising pollution indices, multivariate analysis, and health risk assessment studies, we propose a novel investigation to examine the metal content in the Ulhas River sediments, a prominent agricultural and drinking water supply (320 million-litre per day) near Mumbai in Maharashtra, India. The eleven metals and metalloids (As, Cd, Cr, Cu, Fe, Hg, Mn, Ni, Pb, Se, and Zn) were examined monthly from 10 stations totaling 120 sediment specimens from October 2022 to September 2023. Investigations revealed that average values of Cr, Cu, Hg, and Ni exceeded Australian and New Zealand Environment and Conservation Council and Agriculture and Resource Management Council values, while all metals exceeded World surface rock average limits except As. Various pollution indices showed that upstream sites had none to low level contamination, whereas downstream locations had moderate to considerable contamination, suggesting anthropogenic influences. Furthermore, multivariate analysis including correlation, cluster, and principal component analysis identified that sediment pollution was mostly caused by anthropogenic activities. Lastly, health risk assessment indicated Fe was non-carcinogenic to children, whereas Cr and Ni were carcinogenic to children and adults, with children being more susceptible. Thus, from the findings of the study it is clear that, despite low to moderate pollution levels, metals may have significant repercussions, thus requiring long-term planning, frequent monitoring, and metal abatement strategies to mitigate river contamination.

The effects of monoculture and intercropping on photosynthesis performance correlated with growth of garlic and perennial ryegrass response to different heavy metals

BACKGROUND

The potential of phytoremediation using garlic monoculture (MC) and intercropping (IC) system with perennial ryegrass to enhance the uptake of cadmium (Cd), chromium (Cr), and lead (Pb) were investigated.

RESULTS

Positive correlations were found between MC and IC systems, with varying biomass. Production of perennial ryegrass was affected differently depending on the type of toxic metal present in the soil. Root growth inhibition was more affected than shoot growth inhibition. The total biomass of shoot and root in IC was higher than MC, increasing approximately 3.7 and 2.9 fold compared to MC, attributed to advantages in root IC crop systems. Photosystem II efficiency showed less sensitivity to metal toxicity compared to the control, with a decrease between 10.07-12.03%. Among gas exchange parameters, only Cr significantly affected physiological responses by reducing transpiration by 69.24%, likely due to leaf chlorosis and necrosis.

CONCLUSION

This study exhibited the potential of garlic MC and IC with perennial ryegrass in phytoremediation. Although the different metals affect plant growth differently, IC showed advantages over MC in term biomass production.

Toxicity and bioremediation of the lead: a critical review

Lead is a naturally occurring, bluish-gray metal that is found in small quantities in the earth's crust. The existing literature demonstrates that non-biodegradable character and continuous use results in accumulation of lead concentration in the environment and causes various ill effects such as neurotoxicity, change in psychological and behavioral development of different organisms. Nowadays the most effective technique in the revival of the environment is bioremediation and it is environmentally friendly and cost-effective. Bacterial strains such as Oceanobacillus profundus and Lactobacillus acidophilus ATCC4356 have the ability to reduce lead 97% and 73.9%, respectively. Similarly some species of algae and fungal strains also showed lead removal efficiency as 74% (spirulina), 97.1% (Chlorella kessleri), 95.5% (Penicillium janthinillum) and 86% (Aspergillus flavus). Biodegradation of lead by various microbes would be the most efficient and sustainable approach. This review focuses on toxicity, fate of lead in the environment and its microbial degradation.

Fungal bioremediation approaches for the removal of toxic pollutants: Mechanistic understanding for biorefinery applications

Pollution is a global menace that poses harmful effects on all the living ecosystems and to the Earth. As years pass by, the available and the looming rate of pollutants increases at a faster rate. Although many treatments and processing strategies are waged for treating such pollutants, the by-products and the wastes or drain off generated by these treatments further engages in the emission of hazardous waste. Innovative and long-lasting solutions are required to address the urgent global issue of hazardous pollutant remediation from contaminated environments. Myco-remediation is a top-down green and eco-friendly tool for pollution management. It is a cost-effective and safer practice of converting pernicious substances into non-toxic forms by the use of fungi. But these pollutants can be transformed into useable products along with multiple benefits for the environment such as sequestration of carbon emissions and also to generate high valuable bioactive materials that fits as a sustainable economic model. The current study has examined the possible applications of fungi in biorefineries and their critical role in the transformation and detoxification of pollutants. The paper offers important insights into using fungal bioremediation for both economically and environmentally sound solutions in the domain of biorefinery applications by combining recent research findings.

Exposure to polystyrene nanoplastics reduces bacterial and fungal biomass in microfabricated soil models

Nanoplastics have been proven to induce toxicity in diverse organisms, yet their effect on soil microbes like bacteria and fungi remains largely unexplored. In this paper, we used micro-engineered soil models to investigate the effect of polystyrene (PS) nanospheres on Pseudomonas putida and Coprinopsis cinerea. Specifically, we explored the effects of increasing concentrations of 60 nm carboxylated bovine serum albumin (BSA) coated nanospheres (0, 0.5, 2, and 10 mg/L) on these bacterial and fungal model organisms respectively, over time. We found that both microorganisms could disperse through the PS solution, but long-distance dispersal was reduced by high concentrations. Microbial biomass decreased in all treatments, in which bacteria showed a linear dose response with the strongest effect at 10 mg/L concentration, and fungi showed a non-linear response with the strongest effect at 2 mg/L concentration. At the highest nanoplastics concentration, the first colonizing fungal hyphae adsorbed most of the PS nanospheres present in their vicinity, in a process that we termed the 'vacuum cleaner effect'. As a result, the toxicity effect of the original treatment on subsequently growing fungal hyphae was reduced to a growth level indistinguishable from the control. We did not find evidence that nanoplastics are able to penetrate bacterial nor fungal cell walls. Overall, our findings provide evidence that nanoplastics can cause a direct negative effect on soil microbes and highlight the need for further studies that can explain how the microbial stress response might affect soil functions.

Advances, challenges, and prospects in microalgal-bacterial symbiosis system treating heavy metal wastewater

Heavy metal (HM) pollution, particularly in its ionic form in water bodies, is a chronic issue threatening environmental security and human health. The microalgal-bacterial symbiosis (MABS) system, as the basis of water ecosystems, has the potential to treat HM wastewater in a sustainable manner, with the advantages of environmental friendliness and carbon sequestration. However, the differences between laboratory studies and engineering practices, including the complexity of pollutant compositions and extreme environmental conditions, limit the applications of the MABS system. Additionally, the biomass from the MABS system containing HMs requires further disposal or recycling. This review summarized the recent advances of the MABS system treating HM wastewater, including key mechanisms, influence factors related to HM removal, and the tolerance threshold values of the MABS system to HM toxicity. Furthermore, the challenges and prospects of the MABS system in treating actual HM wastewater are analyzed and discussed, and suggestions for biochar preparation from the MABS biomass containing HMs are provided. This review provides a reference point for the MABS system treating HM wastewater and the corresponding challenges faced by future engineering practices.

Halo-alkaliphilic microbes as an effective tool for heavy metal pollution abatement and resource recovery: challenges and future prospects

The current study presents an overview of heavy metals bioremediation from halo-alkaline conditions by using extremophilic microorganisms. Heavy metal remediation from the extreme environment with high pH and elevated salt concentration is a challenge as mesophilic microorganisms are unable to thrive under these polyextremophilic conditions. Thus, for effective bioremediation of extreme systems, specialized microbes (extremophiles) are projected as potential bioremediating agents, that not only thrive under such extreme conditions but are also capable of remediating heavy metals from these environments. The physiological versatility of extremophiles especially halophiles and alkaliphiles and their enzymes (extremozymes) could conveniently be harnessed to remediate and detoxify heavy metals from the high alkaline saline environment. Bibliometric analysis has shown that research in this direction has found pace in recent years and thus this review is a timely attempt to highlight the importance of halo-alkaliphiles for effective contaminant removal in extreme conditions. Also, this review systematically presents insights on adaptive measures utilized by extremophiles to cope with harsh environments and outlines the role of extremophilic microbes in industrial wastewater treatment and recovery of metals from waste with relevant examples. Further, the major challenges and way forward for the effective applicability of halo-alkaliphilic microbes in heavy metals bioremediation from extremophilic conditions are also highlighted.

Recent Advances in Microbial-Assisted Remediation of Cadmium-Contaminated Soil

Soil contamination with cadmium (Cd) is a severe concern for the developing world due to its non-biodegradability and significant potential to damage the ecosystem and associated services. Industries such as mining, manufacturing, building, etc., rapidly produce a substantial amount of Cd, posing environmental risks. Cd toxicity in crop plants decreases nutrient and water uptake and translocation, increases oxidative damage, interferes with plant metabolism and inhibits plant morphology and physiology. However, various conventional physicochemical approaches are available to remove Cd from the soil, including chemical reduction, immobilization, stabilization and electro-remediation. Nevertheless, these processes are costly and unfriendly to the environment because they require much energy, skilled labor and hazardous chemicals. In contrasting, contaminated soils can be restored by using bioremediation techniques, which use plants alone and in association with different beneficial microbes as cutting-edge approaches. This review covers the bioremediation of soils contaminated with Cd in various new ways. The bioremediation capability of bacteria and fungi alone and in combination with plants are studied and analyzed. Microbes, including bacteria, fungi and algae, are reported to have a high tolerance for metals, having a 98% bioremediation capability. The internal structure of microorganisms, their cell surface characteristics and the surrounding environmental circumstances are all discussed concerning how microbes detoxify metals. Moreover, issues affecting the effectiveness of bioremediation are explored, along with potential difficulties, solutions and prospects.

Biogeography of Fungal Communities Associated with Pinus sylvestris L. and Picea abies (L.) H. Karst. along the Latitudinal Gradient in Europe

We assessed the diversity and composition of fungal communities in different functional tissues and the rhizosphere soil of Pinus sylvestris and Picea abies stands along the latitudinal gradient of these tree species distributions in Europe to model possible changes in fungal communities imposed by climate change. For each tree species, living needles, shoots, roots, and the rhizosphere soil were sampled and subjected to high-throughput sequencing. Results showed that the latitude and the host tree species had a limited effect on the diversity and composition of fungal communities, which were largely explained by the environmental variables of each site and the substrate they colonize. The mean annual temperature and mean annual precipitation had a strong effect on root fungal communities, isothermality on needle fungal communities, mean temperature of the warmest quarter and precipitation of the driest month on shoot fungal communities, and precipitation seasonality on soil fungal communities. Fungal communities of both tree species are predicted to shift to habitats with a lower annual temperature amplitude and with increasing precipitation during the driest month, but the suitability of these habitats as compared to the present conditions is predicted to decrease in the future.

Biological and green remediation of heavy metal contaminated water and soils: A state-of-the-art review

Contamination of the natural ecosystem by heavy metals, organic pollutants, and hazardous waste severely impacts on health and survival of humans, animals, plants, and microorganisms. Diverse chemical and physical treatments are employed in many countries, however, the acceptance of these treatments are usually poor because of taking longer time, high cost, and ineffectiveness in contaminated areas with a very high level of metal contents. Bioremediation is an eco-friendly and efficient method of reclaiming contaminated soils and waters with heavy metals through biological mechanisms using potential microorganisms and plant species. Considering the high efficacy, low cost, and abundant availability of biological materials, particularly bacteria, algae, yeasts, and fungi, either in natural or genetically engineered (GE) form, bioremediation is receiving high attention for heavy metal removal. This report comprehensively reviews and critically discusses the biological and green remediation tactics, contemporary technological advances, and their principal applications either in-situ or ex-situ for the remediation of heavy metal contamination in soil and water. A modified PRISMA review protocol is adapted to critically assess the existing research gaps in heavy metals remediation using green and biological drivers. This study pioneers a schematic illustration of the underlying mechanisms of heavy metal bioremediation. Precisely, it pinpoints the research bottleneck during its real-world application as a low-cost and sustainable technology.

A review on the clean-up technologies for heavy metal ions contaminated soil samples

The soil contamination with heavy metal ions is one of the grave intricacies faced worldwide over the last few decades by the virtue of rapid industrialization, human negligence and greed. Heavy metal ions are quite toxic even at low concentration a swell as non-biodegradable in nature. Their bioaccumulation in the human body leads to several chronic and persistent diseases such as lung cancer, nervous system break down, respiratory problems and renal damage etc. In addition to this, the increased concentration of these metal ions in soil, beyond the permissible limits, makes the soil unfit for further agricultural use. Hence it is our necessity, to monitor the concentration of these metal ions in the soil and water bodies and adopt some better technologies to eradicate them fully. From the literature survey, it was observed that three main types of techniques viz. physical, chemical, and biological were employed to harness the heavy metal ions from metal-polluted soil samples. The main goal of these techniques was the complete removal of the metal ions or the transformation of them into less hazardous and toxic forms. Further the selection of the remediation technology depends upon different factors such as process feasibility/mechanism of the process applied, nature and type of contaminants, type and content of the soil, etc. In this review article, we have studied in detail all the three technologies viz. physical, chemical and biological with their sub-parts, mechanism, pictures, advantages and disadvantages.

Biofabricated yeast: super-soldier for detoxification of heavy metals

The advances in nanotechnology have shown enormous impacts in environmental technology as a potent weapon for degradation of toxic organic pollutants and detoxification of heavy metals. It is either by in-situ or ex-situ adaptive strategies. Mycoremediation of environmental pollutants has been a success story of the past decade, by employing the wide arsenal of biological capabilities of fungi. Recently, the proficiency and uniqueness of yeast cell surface alterations have encouraged the generation of engineered yeast cells as dye degraders, heavy metal reduction and its recovery, and also as detoxifiers of various hazardous xenobiotic compounds. As a step forward, recent trends in research are towards developing biologically engineered living materials as potent, biocompatible and reusable hybrid nanomaterials. They include chitosan-yeast nanofibers, nanomats, nanopaper, biosilica hybrids, and TiO₂-yeast nanocomposites. The nano-hybrid materials contribute significantly as supportive stabilizer, and entrappers, which enhances the biofabricated yeast cells' functionality. This field serves as an eco-friendly cutting-edge cocktail research area. In this review, we highlight recent research on biofabricated yeast cells and yeast-based biofabricated molecules, as potent heavy metals, toxic chemical detoxifiers, and their probable mechanistic properties with future application perspectives.

Research advances on endophytic fungi and their bioactive metabolites

Endophytic fungi, as a kind of fungi living in the healthy plant tissues and organs, are important sources of natural bioactive products and new microbial resources with high developing value. Therefore, exploration and utilization of endophytic fungi can not only alleviate the problems of resource shortage and ecological balance destruction caused by extracting large number of useful bioactive products from natural plants, but also benefit the protection of rare and endangered plant resources, which is of great significance and economic value. This review mainly expounds the concept of endophytic fungi, analyzes the research advances of endophytic fungi from antioxidant, antibacterial, insecticidal, regulating plant growth, anticancer and antitumor bioactivities and, furthermore, summarizes the existing problems in present research of endophytic fungi and corresponding solutions. We hope that this review could provide references for the development and utilization of endophytic fungi and their bioactive metabolites.

Applying fulvic acid for sediment metals remediation: Mechanism, factors, and prospect

Fulvic acid (FA) has been shown to play a decisive role in controlling the environmental geochemical behavior of metals. As a green and natural microbial metabolite, FA is widely used in environmental remediation because of its good adsorption complexation and redox ability. This paper introduces the reaction mechanism and properties of FA with metals, and reviews the progress of research on the remediation of metal pollutant by FA through physicochemical remediation and bioremediation. FA can control the biotoxicity and migration ability of some metals, such as Pb, Cr, Hg, Cd, and As, through adsorption complexation and redox reactions. The concentration, molecular weight, and source are the main factors that determine the remediation ability of FA. In addition, the ambient pH, temperature, metal ion concentrations, and competing components in sediment environments have significant effects on the extent and rate of a reaction between metals and FA during the remediation process. Finally, we summarize the challenges that this promising environmental remediation tool may face. The research directions of FA in the field of metals ecological remediation are also prospected. This review can provide new ideas and directions for the research of remediation of metals contaminants in sediments.

Equilibrium kinetics and thermodynamic studies on biosorption of heavy metals by metal-resistant strains of Trichoderma isolated from tannery solid waste

This study was aimed at finding the metal sorption potential of six indigenous Trichoderma strains by using batch experiments for Cd (II), Cr (VI), Cu (II), and Pb (II). Trichoderma atrobrunneum showed maximum metal biosorption potential at 800 mg L^-1 of initial concentration. Two adsorption isotherm models, (1) Langmuir (2) Freundlich models, were employed on the biosorption data obtained at various initial metal concentrations (10 mg L^-1-200 mg L^-1) and pseudo-first (PSI) and pseudo-second (PSII) order equilibrium kinetic models were subjected to data of agitation time (3-7 days). A maximum correlation coefficient value (R²) of ≤ 1 was observed for the Langmuir and PSII model. Results revealed that pH 6-7 was the best for metal sorption, while metal removal efficiency was increased by increasing temperature (298 K, 303 K, 308 K, 313 K). The results of thermodynamic study parameters (∆G°, ∆H°, ∆S°) indicated that heavy metal biosorption by Trichoderma strains was an endothermic, spontaneous, and feasible process. Moreover, surface characterization analysis through SEM, BET, FTIR, and XRD showed that T. atrobrunneum and Trichoderma sp. could adsorb more metal ions when grown in high metal concentrations. The results indicate that living biomass of T. atrobrunneum and Trichoderma sp. is an effective multi-metal biosorbent that can be used for efficacious bioremediation of bio-treatment of heavy metal polluted wastewater.

Recent advances in bioremediation of heavy metals and persistent organic pollutants: A review

Heavy metals and persistent organic pollutants are causing detrimental effects on the environment. The seepage of heavy metals through untreated industrial waste destroys the crops and lands. Moreover, incineration and combustion of several products are responsible for primary and secondary emissions of pollutants. This review has gathered the remediation strategies, current bioremediation technologies, and their primary use in both in situ and ex situ methods, followed by a detailed explanation for bioremediation over other techniques. However, an amalgam of bioremediation techniques and nanotechnology could be a breakthrough in cleaning the environment by degrading heavy metals and persistant organic pollutants.

Biosorption of Cr (VI) by acid-modified based-waste fungal biomass from Calocybe indica fruiting bodies production

The world is going through a colossal drinking water scarcity. Unchecked discharge (even at trace levels) of Cr (VI) from industries into water bodies is a serious environmental concern. Here, we report waste fungal biomass (WFB) for the detoxification and removal of chromium ions. Biomass understudy was collected from Calocybe indica fruiting bodies. WFB was used after drying and pretreatment with two distinctive chemical methods, which improved the remediation effectiveness of Cr (VI). Light microscope and Field emission Scanning microscope (FESEM) were employed to elucidate the surface morphology of waste fungal biomass. While Fourier-Transform Infrared-Spectroscopy (FTIR) and Energy Dispersive X-Ray analysis (EDAX) were deployed to explore the mechanism of interaction between Cr (VI) anion and waste fungal biomass. X-ray Photoelectron Spectroscopy (XPS) analyses demonstrated considerable conversion of Cr (VI) into nontoxic Cr (III) species. The most favorable condition for optimum Cr (VI) remediation of 99.66% by treated waste fungal biomass (TWFB) occurred at pH 3, contact time 10 min, adsorbent dosage 3 gL^-1, Cr (VI) concentration 4 mgL^-1, stirring speed 140 rpm, and temperature 320 K, where for untreated waste fungal biomass (UWFB) the optimum of 85% remediation occurred at a contact time 15 min, and adsorbent dosage 2 gL^-1 whereas other experimental conditions remained identical as TWFB biosorbent. Pseudo-second-order kinetics (R² > 0.99) model matched the adsorption rate. And, the Freundlich isotherm model (R² > 0.99) is shown to be a better match for the experimental data. The optimum amount of Cr (VI) adsorbed by the TWFB and UWFB were 205.8 ± 10.1 and 72.85 ± 2.36 mgg^-1, respectively. Thermodynamic parameters revealed that the adsorption was spontaneous (ΔG ˂ 0), endothermic (ΔH > 0), and entropy-driven (ΔS > 0). The generated WFB adsorbent also has significant recycling potential. After five cycles of regeneration and adsorption. It can still keep up good remediation effectiveness of Cr (VI) ions to 85.5.

Bacterial redox response factors in the management of environmental oxidative stress

Bacteria evolved to survive in the available environmental chemosphere via several cellular mechanisms. A rich pool of antioxidants and stress regulators plays a significant role in the survival of bacteria in unfavorable environmental conditions. Most of the microbes exhibit resistant phenomena in toxic environment niches. Naturally, bacteria possess efficient thioredoxin reductase, glutaredoxin, and peroxiredoxin redox systems to handle environmental oxidative stress. Further, an array of transcriptional regulators senses the oxidative stress conditions. Transcription regulators, such as OxyR, SoxRS, PerR, UspA, SsrB, MarA, OhrR, SarZ, etc., sense and transduce bacterial oxidative stress responses. The redox-sensitive transcription regulators continuously recycle the utilized antioxidant enzymes during oxidative stress. These regulators promote the expression of antioxidant enzymes such as superoxide dismutase, catalase, and peroxides that overcome oxidative insults. Therefore, the transcriptional regulations maintain steady-state activities of antioxidant enzymes representing the resistance against host cell/environmental oxidative insults. Further, the redox system provides reducing equivalents to synthesize biomolecules, thereby contributing to cellular repair mechanisms. The inactive transcriptional regulators in the undisturbed cells are activated by oxidative stress. The oxidized transcriptional regulators modulate the expression of antioxidant and cellular repair enzymes to survive in extreme environmental conditions. Therefore, targeting these antioxidant systems and response regulators could alter cellular redox homeostasis. This review presents the mechanisms of different redox systems that favor bacterial survival in extreme environmental oxidative stress conditions.

Biosorbent Efficacy of Groundnut Husk for the Elimination of Chromium from the Effluent of Mojo Tannery Industry, Ethiopia

The present study aimed to assess the effects of raw (RGNH), ethanol-extracted (EEGNH), and acid-treated (ATGNH) groundnut (Arachis hypogaea L.) husk for removal of chromium from tannery effluent from the Mojo tannery industry, Ethiopia. The effects of biosorbent dose, agitation speed, and contact time of heavy metal on biosorbent were measured. The percentage removal of chromium was examined by a flame atomic absorption spectrophotometer (FAAS). Functional group characteristics of the biosorbents were analyzed using Fourier transform infrared spectra (FTIR). The results indicated that at low doses (2 g), acid-treated groundnut husk (ATGNH) exhibited the highest removal efficiency (89.93%), whereas at a high dose (4 g), the raw groundnut husk (RGNH) has a potential removal efficiency (91.03%). The least removal efficiency was displayed by ethanol-extracted groundnut husk (EEGNH) (65.43%) at a dose of 3 g. Relating to the contact time, the highest chromium removal (94.41%) was exhibited by ATGNH with a 1-hour contact time. However, as contact time increased from 2 to 4 hours, there was a general decrease in the efficiency of biosorption. The removal of chromium by RGNH and EEGNH increased as contact time increased from 1 to 3 hours. The highest chromium removal (90.02%) was observed with ATGNH at 160 rpm agitation speed.

Microbial degradation and transformation of benzo[a]pyrene by using a white-rot fungus Pleurotus eryngii F032

Polycyclic aromatic hydrocarbons (PAHs) are environmentally recalcitrant contaminants formed from naturally or incomplete combustion of organic materials and some of them are difficult to degrade due to their hydrophobicity and persistency. Benzo [a]pyrene (BaP), is one of PAHs that having five fused benzene and reported as mutagenic, carcinogenic and teratogenic compounds. Biodegradation is one of promising techniques due to its relatively low economic cost and microorganism is a natural capacity to consume hydrocarbons. In this investigation, Pleurotus eryngii F032 was grown in 20 mL of modified mineral salt broth (MSB) supplemented with BaP under static and agitated culture. Within 20 days, static culture removed 59% of BaP, whereas agitated culture removed the highest amount (73%). To expedite BaP elimination, the mechanism and behavior of BaP biosorption and biotransformation by Pleurotus eryngii F032 were additionally examined by gas chromatography-mass spectrometer (GC-MS). The optimal conditions for P. eryngii F032 to eliminate BaP were 25 °C, a C/N ratio of 8, pH 3 and 0.2% inoculum concentration. At an initial BaP content of 10 mg/L, more than 50% was effectively eliminated within 20 days under these conditions. Salinity, glucose, and rhamnolipids were the most important factors impacting BaP biodegradation. GC-MS found degradation products such as BaP-3,6-quinone, indicating plausible metabolic routes. Finally, it may be assumed that the primary mechanism by which white-rot fungi eliminate BaP is by the utilization of biotransformation enzymes such as laccase to mineralize the PAHs. Hence, Pleurotus eryngii F032 could be an ideal candidate to treat PAHs contaminated soils.

Biosorption of heavy metals by microorganisms: Evaluation of different underlying mechanisms

Globally, ecotoxicologists, environmental biologists, biochemists, pathologists, and other experts are concerned about environmental contamination. Numerous pollutants, such as harmful heavy metals and emerging hazardous chemicals, are pervasive sources of water pollution. Water pollution and sustainable development have several eradication strategies proposed and used. Biosorption is a low-cost, easy-to-use, profitable, and efficient method of removing pollutants from water resources. Microorganisms are effective biosorbents, and their biosorption efficacy varies based on several aspects, such as ambient factors, sorbing materials, and metals to be removed. Microbial culture survival is also important. Biofilm agglomerates play an important function in metal uptake by extracellular polymeric molecules from water resources. This study investigates the occurrence of heavy metals, their removal by biosorption techniques, and the influence of variables such as those indicated above on biosorption performance. Ion exchange, complexation, precipitation, and physical adsorption are all components of biosorption. Between 20 and 35 °C is the optimal temperature range for biosorption efficiency from water resources. Utilizing living microorganisms that interact with the active functional groups found in the water contaminants might increase biosorption efficiency. This article discusses the negative impacts of microorganisms on living things and provides an outline of how they affect the elimination of heavy metals.

Potentiality of phosphorus-accumulating organisms biomasses in biosorption of Cd(II), Pb(II), Cu(II) and Zn(II) from aqueous solutions: Behaviors and mechanisms

Heavy metal pollution is consistently a critical global issue, and bioremediation is regarded as one of the most promising approaches. In this work, the biosorption characteristics of Cd(II), Pb(II), Cu(II) and Zn(II) from aqueous solutions using three phosphorus-accumulating organisms (PAOs) biomasses, Ochrobactrum cicero (PAB-006), Stenotrophomonas maltophilia (PAB-009), and Pseudomonas putida (PAB-0031), as biosorbents were investigated. Results indicated that the equilibrium biosorption capacities of biosorbents to heavy metal ions were sensitive to the solution pH, and increased with increasing pH values. The experimental data of Cd(II), Pb(II), Cu(II) and Zn(II) biosorption were in good agreement with the Pseudo-second-order, Redlich-Peterson and Temkin models, implying that the biosorption was a hybrid chemical reaction-biosorption process. In addition, the theoretical maximum biosorption capacities of Cd(II), Pb(II), Cu(II) and Zn(II) were calculated to be 67.84, 80.23, 50.56 and 63.07 mg/g for PAB-006, 59.99, 87.71, 39.26 and 64.00 mg/g for PAB-009 and 68.31, 85.43, 38.97 and 62.85 mg/g for PAB-031, respectively (pH = 5.0 ± 0.1, T = 25 °C), according to the parameters of the Langmuir model. Moreover, ionic strength had negligible influences or slight promoting effects, while humic acid exhibited positive effects on the removal of heavy metals. Further, PABs were stable and displayed excellent reusability. Characterization techniques of FTIR and XPS revealed that surface complexation, ion exchange, hydrogen bonding and electrostatic interaction were the main mechanisms involved in the biosorption process. In summary, the biosorbent PABs possessed high biosorption performance with excellent reusability, and which hold the great application prospect in the treatment of heavy metal contaminated water.

Composition and Ecological Functionality of Fungal Communities Associated with Smokeless Tobacco Products Mainly Consumed in India

The microbial communities present in smokeless tobacco products (STPs) perform critical steps in the synthesis of carcinogens, mainly tobacco-specific nitrosamines (TSNAs). Most studies emphasize the bacterial component, and the mycobiome of STPs has not been well characterized. In this study, we investigated the fungal communities in the different categories of STPs by sequencing the internal transcribed spacer (ITS) rRNA region of the fungal genome. The ecological character of the fungal community associated with STPs was determined by using FUNGuild. Our results indicated that Ascomycota and Basidiomycota were the most abundant fungal phyla across all STPs. The predominant fungal genera in STPs were Pichia, Sterigmatomyces, and Mortierella. The α-diversity varied significantly across the STPs based on observed, Fisher, and Shannon indices. Using SparCC cooccurrence network analysis, significant positive correlations of 58.5% and negative connections of 41.5% were obtained among fungal genera identified in STPs. Furthermore, the functional predictions by FUNGuild determined that STPs possessed high abundances of saprotroph and pathotroph-saprotroph-symbiotroph fungal trophic groups. At the functional guild level, the qiwam samples contained high abundances of soil saprotrophs, while plant pathogens were prevalent in pan-masala samples. These results suggest that various fungal populations reside in STPs and interrelate with each other and can contribute to the synthesis of TSNAs. This study has established the basis for future large-scale investigations of STP-associated mycobiota and the impact of such mycobiota in oral carcinogenesis in STP users via inflammation and carcinogens (TSNAs and mycotoxins). IMPORTANCE Smokeless tobacco products (STPs) contain complex microbial communities that influence the synthesis of carcinogens, such as tobacco-specific nitrosamines (TSNAs). Research on STP-associated bacterial populations revealed connections between bacterial metabolism and TSNA synthesis. The abundance of the fungal population may also have an impact on the production of TSNAs. This study examined STPs popularly used in India, and diverse fungal communities were identified in these STPs. Pichia, Sterigmatomyces, and Mortierella were the predominant fungal genera in the STPs. High abundances of saprotroph and pathotroph-saprotroph-symbiotroph trophic groups in STPs could affect the degradation of tobacco products and the synthesis of TSNAs.

Lead and Zinc Uptake and Toxicity in Maize and Their Management

Soil contamination with heavy metals is a global problem, and these metals can reach the food chain through uptake by plants, endangering human health. Among the metal pollutants in soils, zinc (Zn) and lead (Pb) are common co-pollutants from anthropogenic activities. Thus, we sought to define the accumulation of Zn and Pb in agricultural soils and maize. Concentrations of Pb in agricultural soil (in Namibia) could reach 3015 mg/Kg, whereas concentrations of Zn in soil (in China) could reach 1140 mg/Kg. In addition, the maximum concentrations of Zn and Pb were 27,870 and 2020 mg/Kg in maize roots and 4180 and 6320 mg/Kg in shoots, respectively. Recent studies have shown that soil properties (such as organic matter content, pH, cation exchange capacity (CEC), texture, and clay content) can play important roles in the bioavailability of Zn and Pb. We also investigated some of the genes and proteins involved in the uptake and transport of Zn and Pb by maize. Among several amendment methods to reduce the bioavailability of Zn and Pb in soils, the use of biochar, bioremediation, and the application of gypsum and lime have been widely reported as effective methods for reducing the accumulation of metals in soils and plants.

Sponge–Microbial Symbiosis and Marine Extremozymes: Current Issues and Prospects

Marine microorganisms have great potential for producing extremozymes. They enter useful relationships like many other organisms in the marine habitat. Sponge–microbial symbiosis enables both sponges and microorganisms to mutually benefit each other while performing their activities within the ecosystem. Sponges, because of their nature as marine cosmopolitan benthic epifaunas and filter feeders, serve as a host for many extremophilic marine microorganisms. Potential extremozymes from microbial symbionts are largely dependent on their successful relationship. Extremozymes have found relevance in food processing, bioremediation, detergent, and drug production. Species diversity approach, industrial-scale bioremediation, integrative bioremediation software, government and industrial support are considered. The high cost of sampling, limited research outcomes, low species growth in synthetic media, laborious nature of metagenomics projects, difficulty in the development of synthetic medium, limited number of available experts, and technological knowhow are current challenges. The unique properties of marine extremozymes underpin their application in industry and biotechnological processes. There is therefore an urgent need for the development of cost-effective methods with government and industry support.

Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses

Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.

Sustainable and efficient technologies for removal and recovery of toxic and valuable metals from wastewater: Recent progress, challenges, and future perspectives

Due to their numerous effects on human health and the natural environment, water contamination with heavy metals and metalloids, caused by their extensive use in various technologies and industrial applications, continues to be a huge ecological issue that needs to be urgently tackled. Additionally, within the circular economy management framework, the recovery and recycling of metals-based waste as high value-added products (VAPs) is of great interest, owing to their high cost and the continuous depletion of their reserves and natural sources. This paper reviews the state-of-the-art technologies developed for the removal and recovery of metal pollutants from wastewater by providing an in-depth understanding of their remediation mechanisms, while analyzing and critically discussing the recent key advances regarding these treatment methods, their practical implementation and integration, as well as evaluating their advantages and remaining limitations. Herein, various treatment techniques are covered, including adsorption, reduction/oxidation, ion exchange, membrane separation technologies, solvents extraction, chemical precipitation/co-precipitation, coagulation-flocculation, flotation, and bioremediation. A particular emphasis is placed on full recovery of the captured metal pollutants in various reusable forms as metal-based VAPs, mainly as solid precipitates, which is a powerful tool that offers substantial enhancement of the remediation processes' sustainability and cost-effectiveness. At the end, we have identified some prospective research directions for future work on this topic, while presenting some recommendations that can promote sustainability and economic feasibility of the existing treatment technologies.

A comprehensive review on sources, analysis and toxicity of environmental pollutants and its removal methods from water environment

Natural and human anthropogenic activities increase the concentration of the toxic pollutant in the water environment; they could cause harmful effects even in their lower concentration. In humans, toxic pollutants damage the structural and functional properties of essential organs including the heart, liver, kidneys, reproductive systems and pancreas. To avoid the toxicity of the pollutant, they should be removed from the water environment. Since various conventional water/wastewater treatment technologies including precipitation, ion exchange, flocculation, filtration, electrodialysis and membrane separation are employed to reduce the concentration of the pollutant, they have various difficulties in implementation, efficiency and ecological perspective. Therefore, several researchers are now focusing on alternative and eco-friendly approach called biosorption to remove toxic contaminants from the water environment. The biosorption innovation is one of the acclaimed systems for water treatment. The noteworthy endeavours have been made throughout the years to grow profoundly particular and effective biosorbent materials that are more effective, abundantly available, and cost-effective. Biosorption is effectively executed by utilizing both living and dead biomasses of bacteria, fungi and algae. Moreover, agro-waste materials are also utilized as biosorbents due to their excellent surface properties, abundant availability and cost-effectiveness. A variety of physical and chemical treatments enhances the biosorption capabilities of biosorbents via modifying their surface properties. In this review, biosorption mechanism, influencing parameters and application of biosorbent materials towards the removal of toxic pollutants are discussed. The future research opportunities for sustainable wastewater treatment were also explained.

Effects of Cd-resistant fungi on uptake and translocation of Cd by soybean seedlings

In this study, three cadmium (Cd)-resistant fungal strains, temporarily named as F1, F2 and F3 were isolated from the roots of Cd-tolerant soybean cultivars, rhizosphere and bulk soils, respectively, in contaminated sites. Cd-resistant strains F1, F2 and F3 were characterized for their effect on biomass, Cd uptake and translocation of two soybean cultivars (Liaodou36 and Liaodou33) grown in Cd-contaminated soils. The results showed that Cd concentration decreased significantly in Cd-supplemented culture solutions inoculated with strains F1, F2 and F3 compared to non-inoculated controls, while cell counts significantly increased during the incubation. The increase in shoot biomass of two soybean cultivars inoculated with strains F1, F2 and F3 ranged from 13% to 29%, 16%-27% and 15%-32%, respectively, compared to controls. Strain F2 had a higher potential to reduce the water-soluble Cd content (23% and 40%) and EDTA-extractable Cd content in the rhizosphere soil of Liaodou36 and Liaodou33 seedlings compared to strains F1 and F3. A significant decrease of Cd contents was observed in the root and shoot of Liaodou33 inoculated with strain F2 compared to non-inoculated controls, and inoculation with strain F2 significantly reduced the TF and BCF of Liaodou33 in comparison with controls. Based on ITS rRNA gene sequence analyses, the strains F1, F2 and F3 were identified as Mucor circinelloides (similarity 99.81%), Curvularia lunata (similarity 99.31%) and Clonostachys rosea (similarity 99.17%). The results of our study demonstrated that the strain F2 had a higher Cd biosorption and immobilization potential than strains F1 and F3. The strain F2 promoted the growth and reduced Cd uptake and translocation of Liaodou33 in Cd-polluted soils. It is worth noting that our results might provide an effective technical support for Cd immobilization remediation and safe soybean production by inoculating moderate Cd-accumulating soybean cultivars with strain F2 in Cd-contaminated soils.

Comparison of Deep-Sea Picoeukaryotic Composition Estimated from the V4 and V9 Regions of 18S rRNA Gene with a Focus on the Hadal Zone of the Mariana Trench

Diversity of microbial eukaryotes is estimated largely based on sequencing analysis of the hypervariable regions of 18S rRNA genes. But the use of different regions of 18S rRNA genes as molecular markers may generate bias in diversity estimation. Here, we compared the differences between the two most widely used markers, V4 and V9 regions of the 18S rRNA gene, in describing the diversity of epipelagic, bathypelagic, and hadal picoeukaryotes in the Challenger Deep of the Mariana Trench, which is a unique and little explored environment. Generally, the V9 region identified more OTUs in deeper waters than V4, while the V4 region provided greater Shannon diversity than V9. In the epipelagic zone, where Alveolata was the dominant group, picoeukaryotic community compositions identified by V4 and V9 markers are similar at different taxonomic levels. However, in the deep waters, the results of the two datasets show clear differences. These differences were mainly contributed by Retaria, Fungi, and Bicosoecida. The primer targeting the V9 region has an advantage in amplifying Bicosoecids in the bathypelagic and hadal zone of the Mariana Trench, and its high abundance in V9 dataset pointed out the possibility of Bicosoecids as a dominant group in this environment. Chrysophyceae, Fungi, MALV-I, and Retaria were identified as the dominant picoeukaryotes in the bathypelagic and hadal zone and potentially play important roles in deep-sea microbial food webs and biogeochemical cycling by their phagotrophic, saprotrophic, and parasitic life styles. Overall, the use of different markers of 18S rRNA gene allows a better assessment and understanding of the picoeukaryotic diversity in deep-sea environments.

Effect of Temperature and Cell Viability on Uranium Biomineralization by the Uranium Mine Isolate Penicillium simplicissimum

The remediation of heavy-metal-contaminated sites represents a serious environmental problem worldwide. Currently, cost- and time-intensive chemical treatments are usually performed. Bioremediation by heavy-metal-tolerant microorganisms is considered a more eco-friendly and comparatively cheap alternative. The fungus Penicillium simplicissimum KS1, isolated from the flooding water of a former uranium (U) mine in Germany, shows promising U bioremediation potential mainly through biomineralization. The adaption of P. simplicissimum KS1 to heavy-metal-contaminated sites is indicated by an increased U removal capacity of up to 550 mg U per g dry biomass, compared to the non-heavy-metal-exposed P. simplicissimum reference strain DSM 62867 (200 mg U per g dry biomass). In addition, the effect of temperature and cell viability of P. simplicissimum KS1 on U biomineralization was investigated. While viable cells at 30°C removed U mainly extracellularly via metabolism-dependent biomineralization, a decrease in temperature to 4°C or use of dead-autoclaved cells at 30°C revealed increased occurrence of passive biosorption and bioaccumulation, as confirmed by scanning transmission electron microscopy. The precipitated U species were assigned to uranyl phosphates with a structure similar to that of autunite, via cryo-time-resolved laser fluorescence spectroscopy. The major involvement of phosphates in U precipitation by P. simplicissimum KS1 was additionally supported by the observation of increased phosphatase activity for viable cells at 30°C. Furthermore, viable cells actively secreted small molecules, most likely phosphorylated amino acids, which interacted with U in the supernatant and were not detected in experiments with dead-autoclaved cells. Our study provides new insights into the influence of temperature and cell viability on U phosphate biomineralization by fungi, and furthermore highlight the potential use of P. simplicissimum KS1 particularly for U bioremediation purposes.

Graphical Abstract

Lignocellulose-Based Superabsorbent Polymer Gel Crosslinked with Magnesium Aluminum Silicate for Highly Removal of Zn (II) from Aqueous Solution

Lignocellulose (LCE) was ultrasonically treated and intercalated into magnesium aluminum silicate (MOT) clay to prepare a nano-lignocellulose magnesium aluminum silicate polymer gel (nano-LCE-MOT) for the removal of Zn (II) from aqueous solution. The product was characterised using nitrogen adsorption/desorption isotherm measurements, Fourier-transform infrared spectroscopy, scanning electron microscopy and energy-dispersive X-ray spectroscopy. The conditions for the adsorption of Zn (II) on nano-LCE-MOT were screened, and adsorption kinetics and isotherm model analysis were carried out to explore the adsorption mechanism and achieve the optimal adsorption of Zn (II). Optimal adsorption was achieved at an initial Zn (II) concentration of 800 mg/L at 60 °C in 160 min at a pH of 4.52. The adsorption kinetics were explored using a pseudo-second-order model, with the isotherm adsorption equilibrium found to conform to the Langmuir model. The maximum adsorption capacity of the nano-LCE-MOT polymer gel toward Zn (II) is 513.48 mg/g. The materials with adsorbed Zn (II) were desorbed using different media, with HCl found to be the most ideal medium to desorb Zn (II). The optimal desorption of Zn (II) was achieved in 0.08 mol/L HCl solution at 65 °C in 60 min. Under these conditions, Zn (II) was almost completely desorbed from the adsorbents, with the adsorption effect after cycling being slightly different from that of the initial adsorption.

Biosorption of heavy metal ions by green alga Neochloris oleoabundans: Effects of metal ion properties and cell wall structure

Effects of metal ion proprieties and the cell wall structure of green alga Neochloris oleoabundans were investigated on five strategically selected heavy metal ions, Pb(II), Hg(II), Zn(II), Cd(II) and Cu(II). The biosorption of these ions were energy-independent and spontaneous Langmuir adsorption. The adsorption capacities of Pb(II), Hg(II), Zn(II), Cd(II) and Cu(II) were determined to be 1.03, 0.91, 1.20, 0.65 and 1.23 mmol/g, respectively. Data suggest that peptide-containing molecules and non-cellulosic polysaccharides on cell wall were the primary sites of adsorption. Ion Pb(II) showed the strongest inhibitive effects on the adsorption of other metal ions on cells in binaries, corresponding to its large affinity to the biosorbents, which was next only to that of Cu(II). A linear relation was established for the first time between the adsorption capacity and the impact factor, which is defined in this paper as the electronegativity of a metal ion normalized by its atomic radius. In other words, adsorption capacity of N. oleoabundans biomass to the tested two-valence metal ions is proportional to the electronegativity and inversely proportional to the radius of the metal ions. Cell aggregation was caused by the addition of Cu(II), which exhibited distinctive adsorption behaviors than other metal ions.

Facile carboxylation of natural eggshell membrane for highly selective uranium (VI) adsorption from radioactive wastewater

With the commercial nuclear technology rising in society nowadays, it is of paramount importance to remove uranium (VI) in radioactive wastewater through a cost-effective and efficient way. Due to simple operation, low cost and abundant adsorbents, the adsorption method has been widely used to treat the radioactive wastewater. However, unsatisfactory selectivity and potential secondary pollution of most adsorbents hamper their practical large-scale application. To overcome these limitations, an effective and green absorbent is developed by functionalizing the waste eggshell membrane (ESM) with carboxyl-rich agents. This design concept transfers waste ESM (or "trash") into a unique "treasure" absorbent for directly handling radioactive wastewater. The resultant ESM-COOH shows excellent adsorption selectivity toward uranium (VI) with the selectivity coefficient of 75%, exceeding a majority of reported adsorbents. Moreover, its adsorption capacity still maintains 84% of the initial value after six cycles, suggesting good reusability. These excellent features enable the ESM-COOH to adsorb uranium (VI) highly selectively and efficiently. This work offers a concept to transfer biological wastes into treasure for the mass remediation of water body.

AtfA-Independent Adaptation to the Toxic Heavy Metal Cadmium in Aspergillus nidulans

Cadmium is an exceptionally toxic industrial and environmental pollutant classified as a human carcinogen. In order to provide insight into how we can keep our environment safe from cadmium contamination and prevent the accumulation of it in the food chain, we aim to elucidate how Aspergillus nidulans, one of the most abundant fungi in soil, survives and handles cadmium stress. As AtfA is the main transcription factor governing stress responses in A. nidulans, we examined genome-wide expression responses of wild-type and the atfA null mutant exposed to CdCl₂. Both strains showed up-regulation of the crpA Cu²⁺/Cd²⁺ pump gene and AN7729 predicted to encode a putative bis(glutathionato)-cadmium transporter, and transcriptional changes associated with elevated intracellular Cys availability leading to the efficient adaptation to Cd²⁺. Although the deletion of atfA did not alter the cadmium tolerance of the fungus, the cadmium stress response of the mutant differed from that of a reference strain. Promoter and transcriptional analyses of the “Phospho-relay response regulator” genes suggest that the AtfA-dependent regulation of these genes can be relevant in this phenomenon. We concluded that the regulatory network of A. nidulans has a high flexibility allowing the fungus to adapt efficiently to stress both in the presence and absence of this important transcription factor.

Metal-Fungus interaction: Review on cellular processes underlying heavy metal detoxification and synthesis of metal nanoparticles

The most adverse outcome of increasing industrialization is contamination of the ecosystem with heavy metals. Toxic heavy metals possess a deleterious effect on all forms of biota; however, they affect the microbial system directly. These heavy metals form complexes with the microbial system by forming covalent and ionic bonds and affecting them at the cellular level and biochemical and molecular levels, ultimately leading to mutation affecting the microbial population. Microbes, in turn, have developed efficient resistance mechanisms to cope with metal toxicity. This review focuses on the vital tolerance mechanisms employed by the fungus to resist the toxicity caused by heavy metals. The tolerance mechanisms have been basically categorized into biosorption, bioaccumulation, biotransformation, and efflux of metal ions. The mechanisms of tolerance to some toxic metals as copper, arsenic, zinc, cadmium, and nickel have been discussed. The article summarizes and provides a detailed illustration of the tolerance means with specific examples in each case. Exposure of metals to fungal cells leads to a response that may lead to the formation of metal nanoparticles to overcome the toxicity by immobilization in less toxic forms. Therefore, fungal-mediated green synthesis of metal nanoparticles, their mechanism of synthesis, and applications have also been discussed. An understanding of how fungus resists metal toxicity can provide insights into the development of adaption techniques and methodologies for detoxification and removal of metals from the environment.

Isolation and characterization of halophilic bacteria with the ability of heavy metal bioremediation and nanoparticle synthesis from Khara salt lake in Iran

Increasing environmental pollutants such as heavy metals have become one of the most severe health dangers because of rapid industrialization. Exposure to lead and nickel heavy toxic metals can lead to hazardous diseases affecting most of the organs in humans. Bioremediation is a process that uses the ability of microorganisms or plants to detoxify environmental contaminants at lower costs than physicochemical techniques. This study isolated halophilic bacteria from Khara salt lake in Iran and screened their ability to resist lead and nickel. After screening stages, three selected strains including Bacillus sp. A21, Oceanobacillus sp. A22 and Salinicoccus A43 were identified by16S rDNA sequencing and the related sequences were submitted to GeneBank with accession IDs MN588312, MN588313, and MN 588,314, respectively. These strains resist 7.2 mM, 4.1 mM, and 6.7 mM lead and 3.6 mM, 3.7 mM, and 4.1 mM nickel, respectively. Investigation of growth pattern and evaluation of bioremediation ability by atomic absorption spectroscopy revealed that Bacillus sp. A21 could decrease lead and nickel in culture medium up to 97.5% and 76%, respectively. Oceanobacillus sp. A22 showed higher lead bioremediation rate (98.8%) and lower nickel-bioremediation rate (73.5%). Salinicoccus sp. A43 showed the least bioremediation ability (92% lead and 71.7% nickel). The ability of selected strains to synthesize lead and nickel nanoparticles was evaluated using UV/Vis spectrophotometry and Energy-Dispersive X-ray Spectroscopy (EDX). Particle dimensions were measured using Scanning Electron Microscopy (SEM). Bacillus sp. A21 and Oceanobacillus sp. A22 strains were able to synthesize lead nanoparticles; however, Salinicoccus sp. A43 could synthesize both lead and nickel nanoparticles.

Remediation of Metal/Metalloid-Polluted Soils: A Short Review

The contamination of soil by heavy metals and metalloids is a worldwide problem due to the accumulation of these compounds in the environment, endangering human health, plants, and animals. Heavy metals and metalloids are normally present in nature, but the rise of industrialization has led to concentrations higher than the admissible ones. They are non-biodegradable and toxic, even at very low concentrations. Residues accumulate in living beings and become dangerous every time they are assimilated and stored faster than they are metabolized. Thus, the potentially harmful effects are due to persistence in the environment, bioaccumulation in the organisms, and toxicity. The severity of the effect depends on the type of heavy metal or metalloid. Indeed, some heavy metals (e.g., Mn, Fe, Co, Ni) at very low concentrations are essential for living organisms, while others (e.g., Cd, Pb, and Hg) are nonessential and are toxic even in trace amounts. It is important to monitor the concentration of heavy metals and metalloids in the environment and adopt methods to remove them. For this purpose, various techniques have been developed over the years: physical remediation (e.g., washing, thermal desorption, solidification), chemical remediation (e.g., adsorption, catalysis, precipitation/solubilization, electrokinetic methods), biological remediation (e.g., biodegradation, phytoremediation, bioventing), and combined remediation (e.g., electrokinetic–microbial remediation; washing–microbial degradation). Some of these are well known and used on a large scale, while others are still at the research level. The main evaluation factors for the choice are contaminated site geology, contamination characteristics, cost, feasibility, and sustainability of the applied process, as well as the technology readiness level. This review aims to give a picture of the main techniques of heavy metal removal, also giving elements to assess their potential hazardousness due to their concentrations.

Mycoremediation of heavy metals: processes, mechanisms, and affecting factors

Industrial processes and mining of coal and metal ores are generating a number of threats by polluting natural water bodies. Contamination of heavy metals (HMs) in water and soil is the most serious problem caused by industrial and mining processes and other anthropogenic activities. The available literature suggests that existing conventional technologies are costly and generated hazardous waste that necessitates disposal. So, there is a need for cheap and green approaches for the treatment of such contaminated wastewater. Bioremediation is considered a sustainable way where fungi seem to be good bioremediation agents to treat HM-polluted wastewater. Fungi have high adsorption and accumulation capacity of HMs and can be potentially utilized. The most important biomechanisms which are involved in HM tolerance and removal by fungi are bioaccumulation, bioadsorption, biosynthesis, biomineralisation, bioreduction, bio-oxidation, extracellular precipitation, intracellular precipitation, surface sorption, etc. which vary from species to species. However, the time, pH, temperature, concentration of HMs, the dose of fungal biomass, and shaking rate are the most influencing factors that affect the bioremediation of HMs and vary with characteristics of the fungi and nature of the HMs. In this review, we have discussed the application of fungi, involved tolerance and removal strategies in fungi, and factors affecting the removal of HMs.

Effect of the direct use of biomass in agricultural soil on heavy metals __ activation or immobilization?

In recent years, the biomass was directly used extensively in agriculture due to its low cost and convenience. Increasingly serious soil pollution of heavy metals may pose threats and risks to human health. Directly addition of biomass to soil may affect the bioavailability and content of heavy metals. Here, we reviewed the impact of direct application of oil cake, manure, sewage sludge, straw and municipal waste to soil on the form and concentration of heavy metals in soil, and also emphasized the role of biomass in soil heavy metals remediation. Heavy metals can be activated in a short term by the content of heavy metals in biomass, the production of low-molecular-weight organic acids by biomass application, and the oxidation of sulfides (except for ammoniation). However, heavy metals in soil can be immobilized by humic substances. These can be produced by biomass during a long-term application to soil. Moreover, the degree of immobilization depended on the kind of biomass. Biomass contaminated by heavy metals cannot be returned to the field directly. Therefore, Mitigating the activation of heavy metals in the early stage of biomass application is meaningful, especially for application of these biomass such as straw, sewage sludge and municipal waste. Future researches should focus on the heavy metal control on direct use of biomass in agricultural.

Tracking gene expression, metabolic profiles, and biochemical analysis in the halotolerant basidiomycetous yeast Rhodotorula mucilaginosa EXF-1630 during benzo[a]pyrene and phenanthrene biodegradation under hypersaline conditions

Polyaromatic phenanthrene (Phe) and benzo[a]pyrene (BaP) are highly toxic, mutagenic, and carcinogenic contaminants widely dispersed in nature, including saline environments. Polyextremotolerant Rhodotorula mucilaginosa EXF-1630, isolated from Arctic sea ice, was grown on a huge concentration range -10 to 500 ppm- of Phe and BaP as sole carbon sources at hypersaline conditions (1 M NaCl). Selected polycyclic aromatic hydrocarbons (PAHs) supported growth as well as glucose, even at high PAH concentrations. Initially, up to 40% of Phe and BaP were adsorbed, followed by biodegradation, resulting in 80% removal in 10 days. While extracellular laccase, peroxidase, and un-specific peroxygenase activities were not detected, NADPH-cytochrome c reductase activity peaked at 4 days. The successful removal of PAHs and the absence of toxic metabolites were confirmed by toxicological tests on moss Physcomitrium patens, bacterium Aliivibrio fischeri, human erythrocytes, and pulmonary epithelial cells (A549). Metabolic profiles were determined at the midpoint of the biodegradation exponential phase, with added Phe and BaP (100 ppm) and 1 M NaCl. Different hydroxylated products were found in the culture medium, while the conjugative metabolite 1-phenanthryl-β-D-glucopyranose was detected in the medium and in the cells. Transcriptome analysis resulted in 870 upregulated and 2,288 downregulated transcripts on PAHs, in comparison to glucose. Genomic mining of 61 available yeast genomes showed a widespread distribution of 31 xenobiotic degradation pathways in different yeast lineages. Two distributions with similar metabolic capacities included black yeasts and mainly members of the Sporidiobolaceae family (including EXF-1630), respectively. This is the first work describing a metabolic profile and transcriptomic analysis of PAH degradation by yeast.

Trichoderma viride involvement in the sorption of Pb(II) on muscovite, biotite and phlogopite: Batch and spectroscopic studies

In this study, batch and spectroscopic approaches were used to explore the sorption of Pb(II) on micas (i.e., muscovite, biotite and phlogopite) in the presence of Trichoderma viride (T. viride). Batch sorption showed that ion exchange, outer-sphere complexes (OSCs) and inner-sphere complexes (ISCs) contributed to Pb(II) sorption on biotite and phlogopite in the pH range of 2.0-7.4, whereas the ISCs were predominant for Pb(II) sorption on muscovite. X-ray diffraction and Fourier transform infrared (FT-IR) analyses have confirmed the changes of structure and surface properties of micas after co-culturing with T. viride, which could improve the sorption capacity of micas to Pb(II). Scanning electron microscopy revealed the bio-mineralization of Pb(II) on T. viride and mica-T. viride composites forming lead phosphates. Furthermore, FT-IR analysis showed that the groups of Si-OH, Al-OH from micas, and carboxyl, phosphate and amino groups from T. viride were synergistically contributing to Pb(II) sorption on mica-T. viride composite. X-ray photoelectron spectroscopy further confirmed that both OSCs and ISCs formed for Pb(II) sorption on micas; however, in the case of mica-T. viride composites, the synergistic effects of T. viride and micas were contributing to Pb(II) sorption through forming the ISCs and biomineralization.

Potentiality of living Bacillus pumilus SWU7-1 in biosorption of strontium radionuclide

Bacillus pumilus SWU7-1 was isolated from strontium ion (Sr(II))-uncontaminated soil, its biosorption potential was evaluated, and the effect of γ-ray radiation treatment on its biosorption was discussed. Domesticated under Sr(II) stress promoted the biosorption ability of B. pumilus to Sr(II), and the biosorption efficiency increased from 46.09% to 94.69%. At a lower initial concentration, the living bacteria had the ability to resist the biosorption of Sr(II). The optimal initial concentration range was 54-130 mg/L. The biosorption profile was better matched by Langmuir than Freundlich model, showing that the biosorption process of Sr(II) by the experimental strain was closer to the surface adsorption. According to Langmuir model, the maximum biosorption capacity of B. pumilus on Sr (II) was 299.4 mg/g. During the bacterial growth in the biosorption process, the changes in biosorption capacity and efficiency can be divided into two phases, and a pseudo-second-order model is followed in each phase. There was no significant difference in the biosorption efficiency of bacteria with different culture time after γ-ray radiation, and all of them were above 90%, which showed that B. pumilus had significant radiation resistance under experimental conditions. This study emphasized the potential application of B. pumilus in the treatment of radioactive Sr(II) pollution by biosorption.