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Han Y, Zhang J, Wang W, Zhou K, Yang W, Pan Q, Nie Z, Guo L. Development and validation of an individual weight-loss model for patients with diabetes treated with metformin. Diabetes Res Clin Pract 2025; 222:112073. [PMID: 40023291 DOI: 10.1016/j.diabres.2025.112073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 02/16/2025] [Accepted: 02/25/2025] [Indexed: 03/04/2025]
Abstract
AIMS To develop a machine learning model for predicting weight loss response to metformin in Chinese patients with type 2 diabetes. METHODS Data were obtained from three Chinese randomized controlled trials (RCT) screening newly diagnosed diabetes patients who received metformin monotherapy. Multiple machine learning methods, including gradient boosting regressor (GBR), were used to predict weight loss at the end of treatment based on baseline clinical characteristics and weight data collected at baseline and after up to weeks 4, 8, or 12. GBR was identified as the optimal model on the validation set according to minimum Mean Absolute Error (MAE) for subsequent analyses. Model performance on predicting categorical weight loss at 3% or 5% was measured using classification metrics, including the area under the curve (AUC), accuracy, sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV). RESULTS Three trials with a total of 1325 individuals with diabetes were pooled in the final analysis. We randomly selected 1126 individuals for the training and the validation group and 119 for the test group. In the test set, all AUC values exceeded 0.71 (with a maximum of 0.83). Additionally, the precision improved when weight data from the 4, 8, and 12-week time points were included in the training group. An online web-based tool was constructed based on the machine learning prediction model. CONCLUSIONS The developed machine learning model can be used to predict the individual weight loss responses to metformin and provide new insights for clinical practice regarding weight management in Chinese patients with diabetes.
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Affiliation(s)
- Yujia Han
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China; University of Chinese Academy of Sciences, Beijing, China
| | - Jia Zhang
- Department of Endocrinology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing, China; Peking University Fifth School of Clinical Medicine, China
| | - Weihao Wang
- Department of Endocrinology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing, China.
| | - Kaixin Zhou
- No. 9 XingDaoHuanBei Road, Guangzhou International Bio Island, Guangzhou 510005 Guangdong Province, China
| | | | - Qi Pan
- Department of Endocrinology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing, China.
| | - Zedong Nie
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
| | - Lixin Guo
- Department of Endocrinology, Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences, Beijing, China.
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Arnay Del Arco R, Castilla Rodríguez I, Cabrera Hernández MA. Improving clinical decision making by creating surrogate models from health technology assessment models: A case study on Type 1 Diabetes Melitus. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2025; 262:108646. [PMID: 39954653 DOI: 10.1016/j.cmpb.2025.108646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Revised: 01/23/2025] [Accepted: 02/02/2025] [Indexed: 02/17/2025]
Abstract
BACKGROUND AND OBJECTIVE Computerized clinical decision support systems (CDSS) that incorporate the latest scientific evidence are essential for enhancing patient care quality. Such systems typically rely on some kind of model to accurately represent the knowledge required to assess the clinicians. Although the use of complex and computationally demanding simulation models is common in this field, such models limit the potential applications of CDSSs, both in real-time applications and in simulation-in-the-loop optimization tools. This paper presents a case study on Type 1 Diabetes Mellitus (T1DM) to demonstrate the development of surrogate models from health technology assessment models, with the aim of enhancing the potential of CDSSs. METHODS The paper details the process of developing machine learning (ML) based surrogate models, including the generation of a dataset for training and testing, and the comparison of different ML techniques. A number of distinct groupings of comorbidities were utilized in the creation of models, which were trained to predict confidence intervals for the time to develop each complication. RESULTS The results of the intersection over union (IoU) analysis between the simulation model output and the surrogate models output for the comorbidities under study were greater than 0.9. CONCLUSION The study concludes that ML-based surrogate models are a viable solution for real-time clinical decision-making, offering a substantial speedup in execution time compared to traditional simulation models.
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Affiliation(s)
- Rafael Arnay Del Arco
- Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Camino San Francisco de Paula, n(o) 19, San Cristobal de La Laguna, 38200, Spain.
| | - Iván Castilla Rodríguez
- Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Camino San Francisco de Paula, n(o) 19, San Cristobal de La Laguna, 38200, Spain
| | - Marco A Cabrera Hernández
- Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Camino San Francisco de Paula, n(o) 19, San Cristobal de La Laguna, 38200, Spain
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Derksen ME, van Beek M, de Bruijn T, Stuit F, Blankers M, Goudriaan AE. Ethical aspects and user preferences in applying machine learning to adjust eHealth addressing substance use: A mixed-methods study. Int J Med Inform 2025; 199:105897. [PMID: 40157245 DOI: 10.1016/j.ijmedinf.2025.105897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 03/19/2025] [Accepted: 03/21/2025] [Indexed: 04/01/2025]
Abstract
BACKGROUND Digital health interventions targeting substance use disorders are being increasingly implemented. Data science methodology has the potential to enhance involvement and efficacy of these interventions, though application may raise ethical considerations. This study aimed to explore possible ethical aspects and preferences among users of an online digital intervention for substance use and gambling disorder regarding the application of supervised machine learning (ML) methodology. METHODS We recruited participants from a widely used, evidence-based online substance use and gambling intervention from the Netherlands (Jellinek Digital Self-help). Initially, we conducted two online focus groups (n = 5 each) to explore topics related to ethical considerations and user preferences regarding the application of ML for adapting unguided digital interventions. Subsequently, the findings from these focus groups informed the development of an online, quantitative, self-reported questionnaire study regarding this topic (n = 157). Data collection and analyses were guided by the principles of biomedical ethics by Beauchamp and Childress. RESULTS Our qualitative and quantitative results revealed that digital intervention users found the application of machine learning analyses to be ethically acceptable, although they had difficulties conceptualizing ML applications. Participants believed that it could benefit the intervention and subsequently their well-being. Both qualitative and quantitative results emphasized the importance of preserving user autonomy in applying supervised ML to adjust digital interventions. In addition, based on both data sources we found that digital intervention users trusted Jellinek's integrity to apply ML. Ethical concerns identified in the qualitative data (e.g., data security, human control), were not confirmed in our quantitative findings. CONCLUSIONS This mixed-methods study revealed that users of digital intervention demonstrated limited concern for ethical aspects regarding applying ML to adapt digital interventions. Ethical aspects were primarily pertained to their needs for autonomy and privacy.
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Affiliation(s)
- Marloes E Derksen
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands; Amsterdam UMC, location University of Amsterdam, Department of Medical Informatics, eHealth Living & Learning Lab Amsterdam, Meibergdreef 9, Amsterdam, Netherlands; Amsterdam Public Health, Digital Health & Mental Health, Amsterdam, Netherlands.
| | - Max van Beek
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands; Amsterdam Public Health, Digital Health & Mental Health, Amsterdam, Netherlands; Amsterdam UMC, location University of Amsterdam, Department of Psychiatry, Meibergdreef 9, Amsterdam, the Netherlands
| | - Tamara de Bruijn
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands; Jellinek Prevention, Amsterdam, Netherlands
| | - Floor Stuit
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands
| | - Matthijs Blankers
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands; Amsterdam Public Health, Digital Health & Mental Health, Amsterdam, Netherlands; Trimbos Institute, The Netherlands Institute of Mental Health and Addiction, Utrecht, Netherlands
| | - Anneke E Goudriaan
- Arkin Mental Health Care and Amsterdam Institute for Addiction Research, Amsterdam, Netherlands; Amsterdam Public Health, Digital Health & Mental Health, Amsterdam, Netherlands; Amsterdam UMC, location University of Amsterdam, Department of Psychiatry, Meibergdreef 9, Amsterdam, the Netherlands
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Zhang MX, Liu PF, Zhang MD, Su PG, Shang HS, Zhu JT, Wang DY, Ji XY, Liao QM. Deep learning in nuclear medicine: from imaging to therapy. Ann Nucl Med 2025:10.1007/s12149-025-02031-w. [PMID: 40080372 DOI: 10.1007/s12149-025-02031-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 02/24/2025] [Indexed: 03/15/2025]
Abstract
BACKGROUND Deep learning, a leading technology in artificial intelligence (AI), has shown remarkable potential in revolutionizing nuclear medicine. OBJECTIVE This review presents recent advancements in deep learning applications, particularly in nuclear medicine imaging, lesion detection, and radiopharmaceutical therapy. RESULTS Leveraging various neural network architectures, deep learning has significantly enhanced the accuracy of image reconstruction, lesion segmentation, and diagnosis, improving the efficiency of disease detection and treatment planning. The integration of deep learning with functional imaging techniques such as positron emission tomography (PET) and single-photon emission computed tomography (SPECT) enable more precise diagnostics, while facilitating the development of personalized treatment strategies. Despite its promising outlook, there are still some limitations and challenges, particularly in model interpretability, generalization across diverse datasets, multimodal data fusion, and the ethical and legal issues faced in its application. CONCLUSION As technological advancements continue, deep learning is poised to drive substantial changes in nuclear medicine, particularly in the areas of precision healthcare, real-time treatment monitoring, and clinical decision-making. Future research will likely focus on overcoming these challenges and further enhancing model transparency, thus improving clinical applicability.
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Affiliation(s)
- Meng-Xin Zhang
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China
- Department of Nuclear Medicine, Henan International Joint Laboratory for Nuclear Protein Regulation, The First Affiliated Hospital, Henan University College of Medicine, Ximen St, Kaifeng, 475004, Henan, China
| | - Peng-Fei Liu
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China
- Department of Nuclear Medicine, Henan International Joint Laboratory for Nuclear Protein Regulation, The First Affiliated Hospital, Henan University College of Medicine, Ximen St, Kaifeng, 475004, Henan, China
| | - Meng-Di Zhang
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China
- Department of Nuclear Medicine, Henan International Joint Laboratory for Nuclear Protein Regulation, The First Affiliated Hospital, Henan University College of Medicine, Ximen St, Kaifeng, 475004, Henan, China
| | - Pei-Gen Su
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China
- School of Medical Technology, Qiqihar Medical University, Qiqihar, 161006, Heilongjiang, China
| | - He-Shan Shang
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China
- School of Computer and Information Engineering, Henan University, Kaifeng, 475004, Henan, China
| | - Jiang-Tao Zhu
- Faculty of Basic Medical Subjects, Shu-Qing Medical College of Zhengzhou, Zhengzhou, 450064, Henan, China.
- Department of Surgery, Faculty of Clinical Medicine, Zhengzhou Shu-Qing Medical College, Gongming Rd, Mazhai Town, Zhengzhou, 450064, Henan, China.
| | - Da-Yong Wang
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China.
- Department of Nuclear Medicine, Henan International Joint Laboratory for Nuclear Protein Regulation, The First Affiliated Hospital, Henan University College of Medicine, Ximen St, Kaifeng, 475004, Henan, China.
| | - Xin-Ying Ji
- Department of Microbiology and Immunology, Henan Provincial Research Center of Engineering Technology for Nuclear Protein Medical Detection, Zhengzhou Health College, Zhengzhou, 45000, Henan, China.
- Department of Nuclear Medicine, Henan International Joint Laboratory for Nuclear Protein Regulation, The First Affiliated Hospital, Henan University College of Medicine, Ximen St, Kaifeng, 475004, Henan, China.
- Faculty of Basic Medical Subjects, Shu-Qing Medical College of Zhengzhou, Zhengzhou, 450064, Henan, China.
| | - Qi-Ming Liao
- Department of Medical Informatics and Computer, Shu-Qing Medical College of Zhengzhou, Gong-Ming Rd, Mazhai Town, Erqi District, Zhengzhou, 450064, Henan, China.
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Du S, Wu Y, Tao J, Shu L, Yan T, Xiao B, Lv S, Ye M, Gong Y, Zhu X, Hu P, Wu M. Development and Validation of Machine Learning Models for Outcome Prediction in Patients with Poor-Grade Aneurysmal Subarachnoid Hemorrhage Following Endovascular Treatment. Ther Clin Risk Manag 2025; 21:293-307. [PMID: 40071129 PMCID: PMC11895686 DOI: 10.2147/tcrm.s504745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Accepted: 02/25/2025] [Indexed: 03/14/2025] Open
Abstract
Background Endovascular treatment (EVT) has been recommended as a superior modality for the treatment of intracranial aneurysm. However, there still exists a worse percentage of poor functional outcome in patients with poor-grade aneurysmal subarachnoid hemorrhage (aSAH) undergoing EVT. Therefore, it is urgently needed to investigate the risk factors and develop a critical decision model in the subtype of such patients. Methods We extracted the target variables from an ongoing registry cohort study, PROSAH-MPC, which was conducted in multiple centers in China. We randomly assigned these patients to training and validation cohorts with a ratio of 7:3. Univariate and multivariate logistic regressions were performed to find the potential factors, and then nine machine learning models and a stack ensemble model were developed with optimized variables. The performance of these models was evaluated through several indicators, including area under the receiver operating characteristic curve (AUC-ROC). We further use Shapley Additive Explanations (SHAP) methods for the distribution of feature visualization based on the optimal models. Results A total of 226 eligible patients with poor-grade aSAH undergoing EVT were enrolled, while 89 (39.4%) has a poor 12-month outcome. Age (Adjusted OR [aOR], 1.08; 95% CI: 1.03-1.13; p = 0.002), subarachnoid hemorrhage volume (aOR, 1.02; 95% CI: 1.00-1.05; p = 0.033), World Federation of Neurosurgical Societies grade (WFNS) (aOR, 2.03; 95% CI: 1.05-3.93; p = 0.035), and Hunt-Hess grade (aOR, 2.36; 95% CI: 1.13-4.93; p = 0.022) were identified as the independent risk factors of the poor outcome. Then, the prediction models developed have revealed that LightGBM algorithm has a superior performance with an AUC-ROC value of 0.842 in the validation cohort, while the SHAP results showed that age is the most important risk factor affecting functional outcomes. Conclusion The LightGBM model holds immense potential in facilitating risk stratification for poor-grade aSAH patients undergoing endovascular treatment who are at risk of adverse outcomes, thereby enhancing clinical decision-making processes. Trial Registration PROSAH-MPC. NCT05738083. Registered 16 November 2022 - Retrospectively registered, https://clinicaltrials.gov/study/NCT05738083.
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Affiliation(s)
- Senlin Du
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Jiangxi Key Laboratory of Neurological Tumors and Cerebrovascular Diseases, Nanchang, 330006, People’s Republic of China
- Jiangxi Health Commission Key Laboratory of Neurological Medicine, Nanchang, 330006, People’s Republic of China
- Institute of Neuroscience, Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Yanze Wu
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Jiangxi Key Laboratory of Neurological Tumors and Cerebrovascular Diseases, Nanchang, 330006, People’s Republic of China
- Jiangxi Health Commission Key Laboratory of Neurological Medicine, Nanchang, 330006, People’s Republic of China
- Institute of Neuroscience, Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Jiarong Tao
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Lei Shu
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Jiangxi Key Laboratory of Neurological Tumors and Cerebrovascular Diseases, Nanchang, 330006, People’s Republic of China
- Jiangxi Health Commission Key Laboratory of Neurological Medicine, Nanchang, 330006, People’s Republic of China
- Institute of Neuroscience, Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Tengfeng Yan
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Jiangxi Key Laboratory of Neurological Tumors and Cerebrovascular Diseases, Nanchang, 330006, People’s Republic of China
- Jiangxi Health Commission Key Laboratory of Neurological Medicine, Nanchang, 330006, People’s Republic of China
- Institute of Neuroscience, Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Bing Xiao
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Shigang Lv
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Minhua Ye
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Yanyan Gong
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Xingen Zhu
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Jiangxi Key Laboratory of Neurological Tumors and Cerebrovascular Diseases, Nanchang, 330006, People’s Republic of China
- Jiangxi Health Commission Key Laboratory of Neurological Medicine, Nanchang, 330006, People’s Republic of China
- Institute of Neuroscience, Nanchang University, Nanchang, 330006, People’s Republic of China
| | - Ping Hu
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
- Department of Neurosurgery, Panzhihua Central Hospital, The second Clinical Medical College of Panzhihua University, Panzhihua, 617067, People’s Republic of China
| | - Miaojing Wu
- Department of Neurosurgery, The second Affiliated Hospital, Jiangxi Medical College of Nanchang University, Nanchang, 330006, People’s Republic of China
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Kara MA. Clouds on the horizon: clinical decision support systems, the control problem, and physician-patient dialogue. MEDICINE, HEALTH CARE, AND PHILOSOPHY 2025; 28:125-137. [PMID: 39644445 DOI: 10.1007/s11019-024-10241-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 11/25/2024] [Indexed: 12/09/2024]
Abstract
Artificial intelligence-based clinical decision support systems have a potential to improve clinical practice, but they may have a negative impact on the physician-patient dialogue, because of the control problem. Physician-patient dialogue depends on human qualities such as compassion, trust, and empathy, which are shared by both parties. These qualities are necessary for the parties to reach a shared understanding -the merging of horizons- about clinical decisions. The patient attends the clinical encounter not only with a malfunctioning body, but also with an 'unhomelike' experience of illness that is related to a world of values and meanings, a life-world. Making wise individual decisions in accordance with the patient's life-world requires not only scientific analysis of causal relationships, but also listening with empathy to the patient's concerns. For a decision to be made, clinical information should be interpreted considering the patient's life-world. This side of clinical practice is not a job for computers, and they cannot be final decision-makers. On the other hand, in the control problem users blindly accept system output because of over-reliance, rather than evaluating it with their own judgement. This means over-reliant parties leave their place in the dialogue to the system. In this case, the dialogue may be disrupted and mutual trust may be lost. Therefore, it is necessary to design decision support systems to avoid the control problem and to limit their use when this is not possible, in order to protect the physician-patient dialogue.
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Affiliation(s)
- Mahmut Alpertunga Kara
- Medicine School, History of Medicine and Ethics Department, Istanbul Medeniyet University, Kuzey Kampus - Unalan Mahallesi, Unalan Sok D-100 Karayolu Yanyol, 34700, Uskudar/Istanbul, Turkey.
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Ghadimi DJ, Vahdani AM, Karimi H, Ebrahimi P, Fathi M, Moodi F, Habibzadeh A, Khodadadi Shoushtari F, Valizadeh G, Mobarak Salari H, Saligheh Rad H. Deep Learning-Based Techniques in Glioma Brain Tumor Segmentation Using Multi-Parametric MRI: A Review on Clinical Applications and Future Outlooks. J Magn Reson Imaging 2025; 61:1094-1109. [PMID: 39074952 DOI: 10.1002/jmri.29543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 07/07/2024] [Accepted: 07/08/2024] [Indexed: 07/31/2024] Open
Abstract
This comprehensive review explores the role of deep learning (DL) in glioma segmentation using multiparametric magnetic resonance imaging (MRI) data. The study surveys advanced techniques such as multiparametric MRI for capturing the complex nature of gliomas. It delves into the integration of DL with MRI, focusing on convolutional neural networks (CNNs) and their remarkable capabilities in tumor segmentation. Clinical applications of DL-based segmentation are highlighted, including treatment planning, monitoring treatment response, and distinguishing between tumor progression and pseudo-progression. Furthermore, the review examines the evolution of DL-based segmentation studies, from early CNN models to recent advancements such as attention mechanisms and transformer models. Challenges in data quality, gradient vanishing, and model interpretability are discussed. The review concludes with insights into future research directions, emphasizing the importance of addressing tumor heterogeneity, integrating genomic data, and ensuring responsible deployment of DL-driven healthcare technologies. EVIDENCE LEVEL: N/A TECHNICAL EFFICACY: Stage 2.
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Affiliation(s)
- Delaram J Ghadimi
- School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Amir M Vahdani
- Image Guided Surgery Lab, Research Center for Biomedical Technologies and Robotics, Advanced Medical Technologies and Equipment Institute, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran
| | - Hanie Karimi
- School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
| | - Pouya Ebrahimi
- Tehran Heart Center, Cardiovascular Diseases Research Institute, Tehran University of Medical Sciences, Tehran, Iran
| | - Mobina Fathi
- School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Farzan Moodi
- School of Medicine, Iran University of Medical Sciences, Tehran, Iran
- Quantitative MR Imaging and Spectroscopy Group (QMISG), Tehran University of Medical Sciences, Tehran, Iran
| | - Adrina Habibzadeh
- Student Research Committee, Fasa University of Medical Sciences, Fasa, Iran
| | | | - Gelareh Valizadeh
- Quantitative MR Imaging and Spectroscopy Group (QMISG), Tehran University of Medical Sciences, Tehran, Iran
| | - Hanieh Mobarak Salari
- Quantitative MR Imaging and Spectroscopy Group (QMISG), Tehran University of Medical Sciences, Tehran, Iran
| | - Hamidreza Saligheh Rad
- Quantitative MR Imaging and Spectroscopy Group (QMISG), Tehran University of Medical Sciences, Tehran, Iran
- Department of Medical Physics and Biomedical Engineering, Tehran University of Medical Sciences, Tehran, Iran
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Thomsen CHN, Kronborg T, Hangaard S, Vestergaard P, Hejlesen O, Jensen MH. Modeling the fasting blood glucose response to basal insulin adjustment in type 2 diabetes: An explainable machine learning approach on real-world data. Int J Med Inform 2025; 195:105758. [PMID: 39705917 DOI: 10.1016/j.ijmedinf.2024.105758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 12/02/2024] [Accepted: 12/07/2024] [Indexed: 12/23/2024]
Abstract
INTRODUCTION Optimal basal insulin titration for people with type 2 diabetes is vital to effectively reducing the risk of complications. However, a sizeable proportion of people (30-50 %) remain in suboptimal glycemic control six months post-initiation of basal insulin. This indicates a clear need for novel titration methods that account for individual patient variability in real-world settings. OBJECTIVE This study aims to investigate the use of real-world data and explainable machine learning in modeling fasting glucose responses to basal insulin adjustments, focusing on identifying factors influencing fasting glucose variability. METHODS A three-step explanatory approach was used to develop models using multiple linear regression, forward feature selection, and three-fold cross-validation. The models were built progressively, starting with a baseline model incorporating fasting blood glucose and insulin dose adjustments, followed by iterative models that in turn included biometric data, social factors, and biochemistry data, and lastly, a comprehensive model without constraints on the feature pool. RESULTS The baseline model yielded an average root mean squared error (RMSE) of 1.52 [95% CI: 1.33-1.71]. The iterative models resulted in an average RMSE of 1.49 [95% CI: 1.35-1.62] (biometric data), 1.47 [95% CI: 1.36-1.58] (social factors), and 1.52 [95% CI: 1.34-1.70] (biochemistry data). The comprehensive model yielded an average RMSE of 1.44 [95% CI: 1.41-1.48]. CONCLUSION Developing explainable machine learning models using real-world data is possible for basal insulin titration. However, model performance is influenced by data's ability to capture everyday behavior, underscoring the need for incorporating more detailed behavioral and social data to optimize future titration models.
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Affiliation(s)
- Camilla Heisel Nyholm Thomsen
- Department of Health Science and Technology, Aalborg University, Aalborg, Denmark; Steno Diabetes Center North Denmark, Aalborg, Denmark.
| | - Thomas Kronborg
- Department of Health Science and Technology, Aalborg University, Aalborg, Denmark; Steno Diabetes Center North Denmark, Aalborg, Denmark.
| | - Stine Hangaard
- Department of Health Science and Technology, Aalborg University, Aalborg, Denmark; Steno Diabetes Center North Denmark, Aalborg, Denmark.
| | - Peter Vestergaard
- Steno Diabetes Center North Denmark, Aalborg, Denmark; Department of Endocrinology, Aalborg University Hospital, Aalborg, Denmark.
| | - Ole Hejlesen
- Department of Health Science and Technology, Aalborg University, Aalborg, Denmark.
| | - Morten Hasselstrøm Jensen
- Department of Health Science and Technology, Aalborg University, Aalborg, Denmark; Data Science, Novo Nordisk A/S, Søborg, Denmark.
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Lin CH, Lin E, Lane HY. Interpretable machine learning to evaluate relationships between DAO/DAOA (pLG72) protein data and features in clinical assessments, functional outcome, and cognitive function in schizophrenia patients. SCHIZOPHRENIA (HEIDELBERG, GERMANY) 2025; 11:27. [PMID: 39987274 PMCID: PMC11846841 DOI: 10.1038/s41537-024-00548-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Accepted: 12/17/2024] [Indexed: 02/24/2025]
Abstract
Machine learning has been proposed to utilize D-amino acid oxidase (DAO) and DAO activator (DAOA [or pLG72]) protein levels to ascertain disease status in schizophrenia. However, it remains unclear whether machine learning can effectively evaluate clinical features in relation to DAO and DAOA in schizophrenia patients. We employed an interpretable machine learning (IML) framework including linear regression, least absolute shrinkage and selection operator (Lasso) models, and generalized additive models (GAMs) to analyze DAO/DAOA levels using 380 Taiwanese schizophrenia patients. Additionally, we incorporated 27 parameters encompassing demographic variables, clinical assessments, functional outcomes, and cognitive function as features. The IML framework facilitated linear and non-linear relationships between features and DAO/DAOA. DAO levels demonstrated significant associations with the 17-item Hamilton Depression Rating Scale (HAMD17) based on linear regression. The Lasso model identified four features-HAMD17, age, working memory, and overall cognitive function (OCF)-and highlighted HAMD17 as the most significant feature, using DAO from chronically stable patients. Utilizing DAOA from acutely exacerbated patients, the Lasso model also identified four features-OCF, Scale for the Assessment of Negative Symptoms 20-item, quality of life scale (QLS), and category fluency-and emphasized OCF as the most significant feature. Furthermore, GAMs revealed a non-linear relationship between category fluency and DAO in chronically stable patients, as well as between QLS and DAOA in acutely exacerbated patients. The study suggests that an IML framework holds promise for assessing linear and non-linear relationships between DAO/DAOA and various features in clinical assessments, functional outcomes, and cognitive function in patients with schizophrenia.
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Affiliation(s)
- Chieh-Hsin Lin
- Department of Psychiatry, Kaohsiung Chang Gung Memorial Hospital, Chang Gung University College of Medicine, Kaohsiung, Taiwan
- School of Medicine, Chang Gung University, Taoyuan, Taiwan
- Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan
| | - Eugene Lin
- Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan.
- Department of Biostatistics, University of Washington, Seattle, WA, 98195, USA.
| | - Hsien-Yuan Lane
- Graduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan.
- Department of Psychiatry, China Medical University Hospital, Taichung, Taiwan.
- Brain Disease Research Center, China Medical University Hospital, Taichung, Taiwan.
- Department of Psychology, College of Medical and Health Sciences, Asia University, Taichung, Taiwan.
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10
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Kurmanaliyev A, Sutiene K, Braukylienė R, Aldujeli A, Jurenas M, Kregzdyte R, Braukyla L, Zhumagaliyev R, Aitaliyev S, Zhanabayev N, Botabayeva R, Orazymbetov Y, Unikas R. An Integrative Machine Learning Model for Predicting Early Safety Outcomes in Patients Undergoing Transcatheter Aortic Valve Implantation. MEDICINA (KAUNAS, LITHUANIA) 2025; 61:374. [PMID: 40142184 PMCID: PMC11943591 DOI: 10.3390/medicina61030374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 02/18/2025] [Accepted: 02/19/2025] [Indexed: 03/28/2025]
Abstract
Background: Early safety outcomes following transcatheter aortic valve implantation (TAVI) for severe aortic stenosis are critical for patient prognosis. Accurate prediction of adverse events can enhance patient management and improve outcomes. Aim: This study aimed to develop a machine learning model to predict early safety outcomes in patients with severe aortic stenosis undergoing TAVI. Methods: We conducted a retrospective single-centre study involving 224 patients with severe aortic stenosis who underwent TAVI. Seventy-seven clinical and biochemical variables were collected for analysis. To handle unbalanced classification problems, an adaptive synthetic (ADASYN) sampling approach was used. A fined-tuned random forest (RF) machine learning model was developed to predict early safety outcomes, defined as all-cause mortality, stroke, life-threatening bleeding, acute kidney injury (stage 2 or 3), coronary artery obstruction requiring intervention, major vascular complications, and valve-related dysfunction requiring repeat procedures. Shapley Additive Explanations (SHAPs) were used to explain the output of the machine learning model by attributing each variable's contribution to the final prediction of early safety outcomes. Results: The random forest model identified left femoral artery diameter and aortic valve calcification volume as the most influential predictors of early safety outcomes. SHAPs analysis demonstrated that smaller left femoral artery diameter and higher aortic valve calcification volume were associated with poorer early safety prognoses. Conclusions: The machine learning model highlights of early safety outcomes after TAVI. These findings suggest that incorporating these variables into pre-procedural assessments may improve risk stratification and inform clinical decision-making to enhance patient care.
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Affiliation(s)
- Abilkhair Kurmanaliyev
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
| | - Kristina Sutiene
- Department of Mathematical Modeling, Kaunas University of Technology, Studentų Str. 50–143, LT-50009 Kaunas, Lithuania;
| | - Rima Braukylienė
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
| | - Ali Aldujeli
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
- CORRIB Research Centre for Advanced Imaging and Core Laboratory, University of Galway, 1 University Road Str., H91 TK33 Galway, Ireland
| | - Martynas Jurenas
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
| | - Rugile Kregzdyte
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
| | - Laurynas Braukyla
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
| | - Rassul Zhumagaliyev
- Department of Cardiac, Thoracic and Vascular Surgery, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (R.Z.); (Y.O.)
| | - Serik Aitaliyev
- Department of Cardiac, Thoracic and Vascular Surgery, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (R.Z.); (Y.O.)
- Faculty of Medicine and Health Care, Al-Farabi Kazakh National University, 71 Al-Farabi Ave., Almaty 050040, Kazakhstan
| | - Nurlan Zhanabayev
- South Kazakhstan Medical Academy, 1 Al-Farabi Square, Shymkent 160019, Kazakhstan; (N.Z.); (R.B.)
| | - Rauan Botabayeva
- South Kazakhstan Medical Academy, 1 Al-Farabi Square, Shymkent 160019, Kazakhstan; (N.Z.); (R.B.)
| | - Yerlan Orazymbetov
- Department of Cardiac, Thoracic and Vascular Surgery, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (R.Z.); (Y.O.)
- National Scientific Medical Center, 42 Abylaikhan Avenue, Astana 010009, Kazakhstan
| | - Ramunas Unikas
- Department of Cardiology, Hospital of Lithuanian University of Health Sciences Kauno Klinikos, Lithuanian University of Health Sciences, 2 Eivenių Str., LT-50009 Kaunas, Lithuania; (A.K.); (R.B.); (A.A.); (M.J.); (R.K.); (L.B.); (R.U.)
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11
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Luo A, Chen W, Zhu H, Xie W, Chen X, Liu Z, Xin Z. Machine Learning in the Management of Patients Undergoing Catheter Ablation for Atrial Fibrillation: Scoping Review. J Med Internet Res 2025; 27:e60888. [PMID: 39928932 PMCID: PMC11851043 DOI: 10.2196/60888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 12/21/2024] [Accepted: 12/30/2024] [Indexed: 02/12/2025] Open
Abstract
BACKGROUND Although catheter ablation (CA) is currently the most effective clinical treatment for atrial fibrillation, its variable therapeutic effects among different patients present numerous problems. Machine learning (ML) shows promising potential in optimizing the management and clinical outcomes of patients undergoing atrial fibrillation CA (AFCA). OBJECTIVE This scoping review aimed to evaluate the current scientific evidence on the application of ML for managing patients undergoing AFCA, compare the performance of various models across specific clinical tasks within AFCA, and summarize the strengths and limitations of ML in this field. METHODS Adhering to the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) guidelines, relevant studies published up to October 7, 2023, were searched from PubMed, Web of Science, Embase, the Cochrane Library, and ScienceDirect. The final included studies were confirmed based on inclusion and exclusion criteria and manual review. The PROBAST (Prediction model Risk Of Bias Assessment Tool) and QUADAS-2 (Quality Assessment of Diagnostic Accuracy Studies-2) methodological quality assessment tools were used to review the included studies, and narrative data synthesis was performed on the modeled results provided by these studies. RESULTS The analysis of 23 included studies showcased the contributions of ML in identifying potential ablation targets, improving ablation strategies, and predicting patient prognosis. The patient data used in these studies comprised demographics, clinical characteristics, various types of imaging (9/23, 39%), and electrophysiological signals (7/23, 30%). In terms of model type, deep learning, represented by convolutional neural networks, was most frequently applied (14/23, 61%). Compared with traditional clinical scoring models or human clinicians, the model performance reported in the included studies was generally satisfactory, but most models (14/23, 61%) showed a high risk of bias due to lack of external validation. CONCLUSIONS Our evidence-based findings suggest that ML is a promising tool for improving the effectiveness and efficiency of managing patients undergoing AFCA. While guiding data preparation and model selection for future studies, this review highlights the need to address prevalent limitations, including lack of external validation, and to further explore model generalization and interpretability.
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Affiliation(s)
- Aijing Luo
- The Second Xiangya Hospital, Central South University, Changsha, China
- School of Life Sciences, Central South University, Changsha, China
- Key Laboratory of Medical Information Research (Central South University), College of Hunan Province, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
| | - Wei Chen
- The Second Xiangya Hospital, Central South University, Changsha, China
- School of Life Sciences, Central South University, Changsha, China
- Key Laboratory of Medical Information Research (Central South University), College of Hunan Province, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
| | - Hongtao Zhu
- The Second Xiangya Hospital, Central South University, Changsha, China
- Key Laboratory of Medical Information Research (Central South University), College of Hunan Province, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
- Information and Network Center, The Second Xiangya Hospital, Central South University, Changsha, China
| | - Wenzhao Xie
- School of Life Sciences, Central South University, Changsha, China
- Key Laboratory of Medical Information Research (Central South University), College of Hunan Province, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
- The Third Xiangya Hospital, Central South University, Changsha, China
| | - Xi Chen
- The Second Xiangya Hospital, Central South University, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
- Information and Network Center, The Second Xiangya Hospital, Central South University, Changsha, China
| | - Zhenjiang Liu
- The Second Xiangya Hospital, Central South University, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
- Department of Cardiology, The Second Xiangya Hospital, Central South University, Changsha, China
| | - Zirui Xin
- The Second Xiangya Hospital, Central South University, Changsha, China
- Key Laboratory of Medical Information Research (Central South University), College of Hunan Province, Changsha, China
- Clinical Research Center For Cardiovascular Intelligent Healthcare In Hunan Province, Changsha, China
- Information and Network Center, The Second Xiangya Hospital, Central South University, Changsha, China
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12
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Hoffman H, Sims JJ, Inoa-Acosta V, Hoit D, Arthur AS, Draytsel DY, Kim Y, Goyal N. Machine learning for clinical outcome prediction in cerebrovascular and endovascular neurosurgery: systematic review and meta-analysis. J Neurointerv Surg 2025:jnis-2024-021759. [PMID: 38772570 DOI: 10.1136/jnis-2024-021759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Accepted: 04/28/2024] [Indexed: 05/23/2024]
Abstract
BACKGROUND Machine learning (ML) may be superior to traditional methods for clinical outcome prediction. We sought to systematically review the literature on ML for clinical outcome prediction in cerebrovascular and endovascular neurosurgery. METHODS A comprehensive literature search was performed, and original studies of patients undergoing cerebrovascular surgeries or endovascular procedures that developed a supervised ML model to predict a postoperative outcome or complication were included. RESULTS A total of 60 studies predicting 71 outcomes were included. Most cohorts were derived from single institutions (66.7%). The studies included stroke (32), subarachnoid hemorrhage ((SAH) 16), unruptured aneurysm (7), arteriovenous malformation (4), and cavernous malformation (1). Random forest was the best performing model in 12 studies (20%) followed by XGBoost (13.3%). Among 42 studies in which the ML model was compared with a standard statistical model, ML was superior in 33 (78.6%). Of 10 studies in which the ML model was compared with a non-ML clinical prediction model, ML was superior in nine (90%). External validation was performed in 10 studies (16.7%). In studies predicting functional outcome after mechanical thrombectomy the pooled area under the receiver operator characteristics curve (AUROC) of the test set performances was 0.84 (95% CI 0.79 to 0.88). For studies predicting outcomes after SAH, the pooled AUROCs for functional outcomes and delayed cerebral ischemia were 0.89 (95% CI 0.76 to 0.95) and 0.90 (95% CI 0.66 to 0.98), respectively. CONCLUSION ML performs favorably for clinical outcome prediction in cerebrovascular and endovascular neurosurgery. However, multicenter studies with external validation are needed to ensure the generalizability of these findings.
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Affiliation(s)
- Haydn Hoffman
- Semmes-Murphey Neurologic and Spine Institute, Memphis, Tennessee, USA
| | - Jason J Sims
- The University of Tennessee Health Science Center, Memphis, Tennessee, USA
| | - Violiza Inoa-Acosta
- Semmes-Murphey Neurologic and Spine Institute, Memphis, Tennessee, USA
- Neurology, University of Tennessee Health Science Center, Memphis, Tennessee, USA
| | - Daniel Hoit
- Neurosurgery, University of Tennessee Health Science Center, Memphis, Tennessee, USA
| | - Adam S Arthur
- Semmes-Murphey Neurologic and Spine Institute, Memphis, Tennessee, USA
- Neurosurgery, University of Tennessee Health Science Center, Memphis, Tennessee, USA
| | - Dan Y Draytsel
- SUNY Upstate Medical University, Syracuse, New York, USA
| | - YeonSoo Kim
- SUNY Upstate Medical University, Syracuse, New York, USA
| | - Nitin Goyal
- Semmes-Murphey Neurologic and Spine Institute, Memphis, Tennessee, USA
- Neurology, University of Tennessee Health Science Center, Memphis, Tennessee, USA
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13
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Hassan SU, Abdulkadir SJ, Zahid MSM, Al-Selwi SM. Local interpretable model-agnostic explanation approach for medical imaging analysis: A systematic literature review. Comput Biol Med 2025; 185:109569. [PMID: 39705792 DOI: 10.1016/j.compbiomed.2024.109569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 10/30/2024] [Accepted: 12/10/2024] [Indexed: 12/23/2024]
Abstract
BACKGROUND The interpretability and explainability of machine learning (ML) and artificial intelligence systems are critical for generating trust in their outcomes in fields such as medicine and healthcare. Errors generated by these systems, such as inaccurate diagnoses or treatments, can have serious and even life-threatening effects on patients. Explainable Artificial Intelligence (XAI) is emerging as an increasingly significant area of research nowadays, focusing on the black-box aspect of sophisticated and difficult-to-interpret ML algorithms. XAI techniques such as Local Interpretable Model-Agnostic Explanations (LIME) can give explanations for these models, raising confidence in the systems and improving trust in their predictions. Numerous works have been published that respond to medical problems through the use of ML models in conjunction with XAI algorithms to give interpretability and explainability. The primary objective of the study is to evaluate the performance of the newly emerging LIME techniques within healthcare domains that require more attention in the realm of XAI research. METHOD A systematic search was conducted in numerous databases (Scopus, Web of Science, IEEE Xplore, ScienceDirect, MDPI, and PubMed) that identified 1614 peer-reviewed articles published between 2019 and 2023. RESULTS 52 articles were selected for detailed analysis that showed a growing trend in the application of LIME techniques in healthcare, with significant improvements in the interpretability of ML models used for diagnostic and prognostic purposes. CONCLUSION The findings suggest that the integration of XAI techniques, particularly LIME, enhances the transparency and trustworthiness of AI systems in healthcare, thereby potentially improving patient outcomes and fostering greater acceptance of AI-driven solutions among medical professionals.
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Affiliation(s)
- Shahab Ul Hassan
- Department of Computer and Information Sciences, Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia; Centre for Intelligent Signal & Imaging Research (CISIR), Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia.
| | - Said Jadid Abdulkadir
- Department of Computer and Information Sciences, Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia; Center for Research in Data Science (CeRDaS), Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia.
| | - M Soperi Mohd Zahid
- Department of Computer and Information Sciences, Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia; Centre for Intelligent Signal & Imaging Research (CISIR), Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia.
| | - Safwan Mahmood Al-Selwi
- Department of Computer and Information Sciences, Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia; Center for Research in Data Science (CeRDaS), Universiti Teknologi PETRONAS, Seri Iskandar, 32610, Perak, Malaysia.
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14
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Caraballo PJ, Meehan AM, Fischer KM, Rahman P, Simon GJ, Melton GB, Salehinejad H, Borah BJ. Trustworthiness of a machine learning early warning model in medical and surgical inpatients. JAMIA Open 2025; 8:ooae156. [PMID: 39764169 PMCID: PMC11702360 DOI: 10.1093/jamiaopen/ooae156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2024] [Revised: 12/12/2024] [Accepted: 12/26/2024] [Indexed: 01/24/2025] Open
Abstract
Objectives In the general hospital wards, machine learning (ML)-based early warning systems (EWSs) can identify patients at risk of deterioration to facilitate rescue interventions. We assess subpopulation performance of a ML-based EWS on medical and surgical adult patients admitted to general hospital wards. Materials and Methods We assessed the scores of an EWS integrated into the electronic health record and calculated every 15 minutes to predict a composite adverse event (AE): all-cause mortality, transfer to intensive care, cardiac arrest, or rapid response team evaluation. The distributions of the First Score 3 hours after admission, the Highest Score at any time during the hospitalization, and the Last Score just before an AE or dismissal without an AE were calculated. The Last Score was used to calculate the area under the receiver operating characteristic curve (ROC-AUC) and the precision-recall curve (PRC-AUC). Results From August 23, 2021 to March 31, 2022, 35 937 medical admissions had 2173 (6.05%) AE compared to 25 214 surgical admissions with 4984 (19.77%) AE. Medical and surgical admissions had significant different (P <.001) distributions of the First Score, Highest Score, and Last Score among those with an AE and without an AE. The model performed better in the medical group when compared to the surgical group, ROC-AUC 0.869 versus 0.677, and RPC-AUC 0.988 versus 0.878, respectively. Discussion Heterogeneity of medical and surgical patients can significantly impact the performance of a ML-based EWS, changing the model validity and clinical discernment. Conclusions Characterization of the target patient subpopulations has clinical implications and should be considered when developing models to be used in general hospital wards.
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Affiliation(s)
- Pedro J Caraballo
- Department of Medicine, Mayo Clinic, Rochester, MN 55905, United States
- Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, United States
| | - Anne M Meehan
- Department of Medicine, Mayo Clinic, Rochester, MN 55905, United States
| | - Karen M Fischer
- Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, United States
| | - Parvez Rahman
- Kern Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN 55905, United States
| | - Gyorgy J Simon
- Department of Medicine, Institute for Health Informatics, University of Minnesota, Minneapolis, MN 55455, United States
- Center for Learning Health System Sciences, University of Minnesota, Minneapolis, MN 55455, United States
| | - Genevieve B Melton
- Center for Learning Health System Sciences, University of Minnesota, Minneapolis, MN 55455, United States
- Department of Surgery, Institute for Health Informatics, University of Minnesota, Minneapolis, MN 55455, United States
| | - Hojjat Salehinejad
- Kern Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN 55905, United States
- Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN 55905, United States
| | - Bijan J Borah
- Kern Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN 55905, United States
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15
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Trigka M, Dritsas E. A Comprehensive Survey of Deep Learning Approaches in Image Processing. SENSORS (BASEL, SWITZERLAND) 2025; 25:531. [PMID: 39860903 PMCID: PMC11769216 DOI: 10.3390/s25020531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 01/13/2025] [Accepted: 01/13/2025] [Indexed: 01/27/2025]
Abstract
The integration of deep learning (DL) into image processing has driven transformative advancements, enabling capabilities far beyond the reach of traditional methodologies. This survey offers an in-depth exploration of the DL approaches that have redefined image processing, tracing their evolution from early innovations to the latest state-of-the-art developments. It also analyzes the progression of architectural designs and learning paradigms that have significantly enhanced the ability to process and interpret complex visual data. Key advancements, such as techniques improving model efficiency, generalization, and robustness, are examined, showcasing DL's ability to address increasingly sophisticated image-processing tasks across diverse domains. Metrics used for rigorous model evaluation are also discussed, underscoring the importance of performance assessment in varied application contexts. The impact of DL in image processing is highlighted through its ability to tackle complex challenges and generate actionable insights. Finally, this survey identifies potential future directions, including the integration of emerging technologies like quantum computing and neuromorphic architectures for enhanced efficiency and federated learning for privacy-preserving training. Additionally, it highlights the potential of combining DL with emerging technologies such as edge computing and explainable artificial intelligence (AI) to address scalability and interpretability challenges. These advancements are positioned to further extend the capabilities and applications of DL, driving innovation in image processing.
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Affiliation(s)
| | - Elias Dritsas
- Industrial Systems Institute (ISI), Athena Research and Innovation Center, 26504 Patras, Greece;
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16
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Leivaditis V, Beltsios E, Papatriantafyllou A, Grapatsas K, Mulita F, Kontodimopoulos N, Baikoussis NG, Tchabashvili L, Tasios K, Maroulis I, Dahm M, Koletsis E. Artificial Intelligence in Cardiac Surgery: Transforming Outcomes and Shaping the Future. Clin Pract 2025; 15:17. [PMID: 39851800 PMCID: PMC11763739 DOI: 10.3390/clinpract15010017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 01/06/2025] [Accepted: 01/08/2025] [Indexed: 01/26/2025] Open
Abstract
Background: Artificial intelligence (AI) has emerged as a transformative technology in healthcare, with its integration into cardiac surgery offering significant advancements in precision, efficiency, and patient outcomes. However, a comprehensive understanding of AI's applications, benefits, challenges, and future directions in cardiac surgery is needed to inform its safe and effective implementation. Methods: A systematic review was conducted following PRISMA guidelines. Literature searches were performed in PubMed, Scopus, Cochrane Library, Google Scholar, and Web of Science, covering publications from January 2000 to November 2024. Studies focusing on AI applications in cardiac surgery, including risk stratification, surgical planning, intraoperative guidance, and postoperative management, were included. Data extraction and quality assessment were conducted using standardized tools, and findings were synthesized narratively. Results: A total of 121 studies were included in this review. AI demonstrated superior predictive capabilities in risk stratification, with machine learning models outperforming traditional scoring systems in mortality and complication prediction. Robotic-assisted systems enhanced surgical precision and minimized trauma, while computer vision and augmented cognition improved intraoperative guidance. Postoperative AI applications showed potential in predicting complications, supporting patient monitoring, and reducing healthcare costs. However, challenges such as data quality, validation, ethical considerations, and integration into clinical workflows remain significant barriers to widespread adoption. Conclusions: AI has the potential to revolutionize cardiac surgery by enhancing decision making, surgical accuracy, and patient outcomes. Addressing limitations related to data quality, bias, validation, and regulatory frameworks is essential for its safe and effective implementation. Future research should focus on interdisciplinary collaboration, robust testing, and the development of ethical and transparent AI systems to ensure equitable and sustainable advancements in cardiac surgery.
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Affiliation(s)
- Vasileios Leivaditis
- Department of Cardiothoracic and Vascular Surgery, WestpfalzKlinikum, 67655 Kaiserslautern, Germany; (V.L.); (A.P.); (M.D.)
| | - Eleftherios Beltsios
- Department of Anesthesiology and Intensive Care, Hannover Medical School, 30625 Hannover, Germany;
| | - Athanasios Papatriantafyllou
- Department of Cardiothoracic and Vascular Surgery, WestpfalzKlinikum, 67655 Kaiserslautern, Germany; (V.L.); (A.P.); (M.D.)
| | - Konstantinos Grapatsas
- Department of Thoracic Surgery and Thoracic Endoscopy, Ruhrlandklinik, West German Lung Center, University Hospital Essen, University Duisburg-Essen, 45141 Essen, Germany;
| | - Francesk Mulita
- Department of General Surgery, General University Hospital of Patras, 26504 Patras, Greece; (L.T.); (K.T.)
| | - Nikolaos Kontodimopoulos
- Department of Economics and Sustainable Development, Harokopio University, 17778 Athens, Greece;
| | - Nikolaos G. Baikoussis
- Department of Cardiac Surgery, Ippokrateio General Hospital of Athens, 11527 Athens, Greece;
| | - Levan Tchabashvili
- Department of General Surgery, General University Hospital of Patras, 26504 Patras, Greece; (L.T.); (K.T.)
| | - Konstantinos Tasios
- Department of General Surgery, General University Hospital of Patras, 26504 Patras, Greece; (L.T.); (K.T.)
| | - Ioannis Maroulis
- Department of General Surgery, General University Hospital of Patras, 26504 Patras, Greece; (L.T.); (K.T.)
| | - Manfred Dahm
- Department of Cardiothoracic and Vascular Surgery, WestpfalzKlinikum, 67655 Kaiserslautern, Germany; (V.L.); (A.P.); (M.D.)
| | - Efstratios Koletsis
- Department of Cardiothoracic Surgery, General University Hospital of Patras, 26504 Patras, Greece;
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Erman A, Ferreira J, Ashour WA, Guadagno E, St-Louis E, Emil S, Cheung J, Poenaru D. Machine-learning-assisted Preoperative Prediction of Pediatric Appendicitis Severity. J Pediatr Surg 2025:162151. [PMID: 39855986 DOI: 10.1016/j.jpedsurg.2024.162151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 12/05/2024] [Accepted: 12/30/2024] [Indexed: 01/27/2025]
Abstract
PURPOSE This study evaluates the effectiveness of machine learning (ML) algorithms for improving the preoperative diagnosis of acute appendicitis in children, focusing on the accurate prediction of the severity of disease. METHODS An anonymized clinical and operative dataset was retrieved from the medical records of children undergoing emergency appendectomy between 2014 and 2021. We developed an ML pipeline that pre-processed the dataset and developed algorithms to predict 5 appendicitis grades (1 - non-perforated, 2 - localized perforation, 3 - abscess, 4 - generalized peritonitis, and 5 - generalized peritonitis with abscess). Imputation strategies were used for missing values and upsampling techniques for infrequent classes. Standard classifier models were tested. The best combination of imputation strategy, class balancing technique and classification model was chosen based on validation performance. Model explainability was verified by a pediatric surgeon. Our model's performance was compared to another pediatric appendicitis severity prediction tool. RESULTS The study used a retrospective cohort including 1980 patients (60.6 % males, average age 10.7 years). Grade of appendicitis in the cohort was as follows: grade 1-70 %; grade 2-8 %; grade 3-7 %; grade 4-7 %; grade 5-8 %. Every combination of 6 imputation strategies, 7 class-balancing techniques, and 5 classification models was tested. The best-performing combined ML pipeline distinguished non-perforated from perforated appendicitis with 82.8 ± 0.2 % NPV and 56.4 ± 0.4 % PPV, and differentiated between severity grades with 70.1 ± 0.2 % accuracy and 0.77 ± 0.00 AUROC. The other pediatric appendicitis severity prediction tool gave an accuracy of 71.4 %, AUROC of 0.54 and NPV/PPV of 71.8/64.7. CONCLUSION Prediction of appendiceal perforation outperforms prediction of the continuum of appendicitis grades. The variables our models primarily rely on to make predictions are consistent with clinical experience and the literature, suggesting that the ML models uncovered useful patterns in the dataset. Our model outperforms the other pediatric appendicitis prediction tools. The ML model developed for grade prediction is the first of this type, offering a novel approach for assessing appendicitis severity in children preoperatively. Following external validation and silent clinical testing, this ML model has the potential to enable personalized severity-based treatment of pediatric appendicitis and optimize resource allocation for its management. LEVEL OF EVIDENCE: 3
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Affiliation(s)
- Aylin Erman
- Department of Computer Science, McGill University, Montreal, QC, Canada.
| | - Julia Ferreira
- Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
| | - Waseem Abu Ashour
- Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
| | - Elena Guadagno
- Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
| | - Etienne St-Louis
- McGill University Faculty of Medicine and Health Sciences, Canada; Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
| | - Sherif Emil
- McGill University Faculty of Medicine and Health Sciences, Canada; Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
| | - Jackie Cheung
- Department of Computer Science, McGill University, Montreal, QC, Canada; Canada CIFAR AI Chair, Mila, Canada
| | - Dan Poenaru
- McGill University Faculty of Medicine and Health Sciences, Canada; Harvey E. Beardmore Division of Pediatric Surgery, The Montreal Children's Hospital, McGill University Health Centre, Montreal, Qc, Canada
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Ajdi B, El Hidan MA, El Asbahani A, Bocquet M, Ait Hamza M, Elqdhy M, Elmourid A, Touloun O, Boubaker H, Bulet P. Taxonomic identification of Morocco scorpions using MALDI-MS fingerprints of venom proteomes and computational modeling. J Proteomics 2025; 310:105321. [PMID: 39304032 DOI: 10.1016/j.jprot.2024.105321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2024] [Revised: 09/17/2024] [Accepted: 09/17/2024] [Indexed: 09/22/2024]
Abstract
The venom of scorpions has been the subject of numerous studies. However, their taxonomic identification is not a simple task, leading to misidentifications. This study aims to provide a practical approach for identifying scorpions based on the venom molecular mass fingerprint (MFP). Specimens (251) belonging to fifteen species were collected from different regions in Morocco. Their MFPs were acquired using MALDI-MS. These were used as a training dataset to generate predictive models and a library of mean spectral profiles using software programs based on machine learning. The computational model achieved an overall recognition capability of 99 % comprising 32 molecular signatures. The models and the library were tested using a new dataset for external validation and to evaluate their capability of identification. We recorded an accuracy classification with an average of 97 % and 98 % for the computational models and the library, respectively. To our knowledge, this is the first attempt to demonstrate the potential of MALDI-MS and MFPs to generate predictive models capable of discriminating scorpions from family to species levels, and to build a library of species-specific spectra. These promising results may represent a proof of concept towards developing a reliable approach for rapid molecular identification of scorpions in Morocco. SIGNIFICANCE OF THE STUDY: With their clinical importance, scorpions may constitute a desirable study model for many researchers. The first step in studying scorpion is systematically identifying the species of interest. However, it can be a difficult task, especially for the non-experts. The taxonomy of scorpions is primarily based on morphometric characters. In Morocco, the high number of species and subspecies mainly endemic, and the morphological similarities between different species may result in false identifications. This was observed in many reports according to the scorpion experts. In this study, we describe a reliable practical approach for identifying scorpions based on the venom molecular mass fingerprints (MFPs). By using two software programs based on machine learning, we have demonstrated that these MFPs contains sufficient inter-specific variation to differentiate between the scorpion species mentioned in this study with a good accuracy. Using a drop of venom, this new approach could be a rapid, accurate and cost saving method for taxonomic identification of scorpions in Morocco.
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Affiliation(s)
- Boujemaa Ajdi
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, University of Ibn Zohr, Agadir, Morocco; Institute for Advanced Biosciences, CR Inserm U1209, CNRSUMR 5309, University of Grenoble-Alpes, 38000 Grenoble, France; Platform BioPark Archamps, 74160 Archamps, France
| | - Moulay Abdelmonaim El Hidan
- Laboratory of Biotechnology and Valorization of Natural Resources, Faculty of Sciences, Ibn Zohr University, Agadir, Morocco.
| | - Abdelhafed El Asbahani
- Laboratory of Applied Chemistry and Environment (LACAPE), Team of Bio-organic Chemistry and Natural substances, Faculty of Sciences, University of Ibn Zohr, Agadir, Morocco.
| | - Michel Bocquet
- Platform BioPark Archamps, 74160 Archamps, France; Apimedia, 74370 Annecy, France
| | - Mohamed Ait Hamza
- Laboratory of Biotechnology and Valorization of Natural Resources, Faculty of Sciences, Ibn Zohr University, Agadir, Morocco.
| | - M'barka Elqdhy
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, University of Ibn Zohr, Agadir, Morocco
| | - Abdessamad Elmourid
- Polyvalent Team in Research and Development (EPVRD), Department of Biology & Geology, Polydisciplinary Faculty, University Sultan My Slimane, Beni Mellal 23030, Morocco
| | - Oulaid Touloun
- Polyvalent Team in Research and Development (EPVRD), Department of Biology & Geology, Polydisciplinary Faculty, University Sultan My Slimane, Beni Mellal 23030, Morocco
| | - Hassan Boubaker
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, University of Ibn Zohr, Agadir, Morocco.
| | - Philippe Bulet
- Institute for Advanced Biosciences, CR Inserm U1209, CNRSUMR 5309, University of Grenoble-Alpes, 38000 Grenoble, France; Platform BioPark Archamps, 74160 Archamps, France.
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Ahn SH, Baek S, Park J, Kim J, Rhee H, Chung YE, Kim H, Lee YH. Uncertainty Quantification in Automated Detection of Vertebral Metastasis Using Ensemble Monte Carlo Dropout. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024:10.1007/s10278-024-01369-3. [PMID: 39707112 DOI: 10.1007/s10278-024-01369-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 11/05/2024] [Accepted: 12/02/2024] [Indexed: 12/23/2024]
Abstract
The accurate and early detection of vertebral metastases is crucial for improving patient outcomes. Although deep-learning models have shown potential in this area, their lack of prediction reliability and robustness limits their clinical utility. To address these challenges, we propose a novel technique called Ensemble Monte Carlo Dropout (EMCD) for uncertainty quantification (UQ), which combines the Monte Carlo dropout and deep ensembles. In this retrospective study, we analyzed 11,468 abdominal computed tomography images from 116 patients diagnosed with vertebral metastases and 957 images from 11 healthy controls. Uncertainty was quantified and visualized using single number, predictive probability interval, posterior distribution and uncertainty class activation maps to provide a detailed understanding of prediction confidence. The EMCD model demonstrated superior performance compared with traditional UQ methods, achieving an area under the receiver operating characteristic curve (AUC) of 0.93 and an expected calibration error of 0.09, indicating high predictive accuracy and reliability. In addition, the model exhibited strong performance in handling out-of-distribution data. When data retention was applied based on uncertainty values, the AUC of the model improved to 0.96, highlighting the potential of uncertainty-driven data selection to enhance performance. The EMCD model represents a significant advancement in the automated detection of vertebral metastases, providing superior diagnostic accuracy and introducing a robust UQ framework to aid clinicians in making informed decisions.
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Affiliation(s)
- Soo Ho Ahn
- Department of Integrative Medicine, Yonsei University College of Medicine, Seoul, Korea
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea
| | - Seungjin Baek
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea
| | - Jiwoo Park
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea
| | - Jaewon Kim
- Depart of Medicine, College of Medicine, Catholic Kwandong University, Gangneung-Si, Gangwon, Korea
| | - Hyungjin Rhee
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea
- Institute for Innovation in Digital Healthcare, Yonsei University, Seoul, Korea
| | - Yong Eun Chung
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea
| | - Hwiyoung Kim
- Department of Neurosurgery, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea.
- Institute for Innovation in Digital Healthcare, Yonsei University, Seoul, Korea.
| | - Young Han Lee
- Department of Radiology, Research Institute of Radiological Science and Center for Clinical Imaging Data Science, Yonsei University College of Medicine, 50-1 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Korea.
- Institute for Innovation in Digital Healthcare, Yonsei University, Seoul, Korea.
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20
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Akbari A, Adabi M, Masoodi M, Namazi A, Mansouri F, Tabaeian SP, Shokati Eshkiki Z. Artificial intelligence: clinical applications and future advancement in gastrointestinal cancers. Front Artif Intell 2024; 7:1446693. [PMID: 39764458 PMCID: PMC11701808 DOI: 10.3389/frai.2024.1446693] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 12/02/2024] [Indexed: 04/01/2025] Open
Abstract
One of the foremost causes of global healthcare burden is cancer of the gastrointestinal tract. The medical records, lab results, radiographs, endoscopic images, tissue samples, and medical histories of patients with gastrointestinal malignancies provide an enormous amount of medical data. There are encouraging signs that the advent of artificial intelligence could enhance the treatment of gastrointestinal issues with this data. Deep learning algorithms can swiftly and effectively analyze unstructured, high-dimensional data, including texts, images, and waveforms, while advanced machine learning approaches could reveal new insights into disease risk factors and phenotypes. In summary, artificial intelligence has the potential to revolutionize various features of gastrointestinal cancer care, such as early detection, diagnosis, therapy, and prognosis. This paper highlights some of the many potential applications of artificial intelligence in this domain. Additionally, we discuss the present state of the discipline and its potential future developments.
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Affiliation(s)
- Abolfazl Akbari
- Colorectal Research Center, Iran University of Medical Sciences, Tehran, Iran
| | - Maryam Adabi
- Infectious Ophthalmologic Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Mohsen Masoodi
- Colorectal Research Center, Iran University of Medical Sciences, Tehran, Iran
| | - Abolfazl Namazi
- Colorectal Research Center, Iran University of Medical Sciences, Tehran, Iran
- Department of Internal Medicine, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | - Fatemeh Mansouri
- Department of Microbiology, Faculty of Sciences, Qom Branch, Islamic Azad University, Qom, Iran
| | - Seidamir Pasha Tabaeian
- Colorectal Research Center, Iran University of Medical Sciences, Tehran, Iran
- Department of Internal Medicine, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | - Zahra Shokati Eshkiki
- Alimentary Tract Research Center, Clinical Sciences Research Institute, Imam Khomeini Hospital, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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21
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Pani K, Chawla I. Synthetic MRI in action: A novel framework in data augmentation strategies for robust multi-modal brain tumor segmentation. Comput Biol Med 2024; 183:109273. [PMID: 39442441 DOI: 10.1016/j.compbiomed.2024.109273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 10/01/2024] [Accepted: 10/10/2024] [Indexed: 10/25/2024]
Abstract
Brain tumor diagnostics rely heavily on Magnetic Resonance Imaging (MRI) for accurate diagnosis and treatment planning due to its non-invasive nature and detailed soft tissue visualization. Integrating multiple MRI modalities enhances diagnostic precision by providing complementary perspectives on tumor characteristics and spatial relationships. However, acquiring specific modalities like T1 Contrast Enhanced (T1CE) can be challenging, as they require contrast agents and longer scan times, which can cause discomfort, particularly in vulnerable patient groups such as the elderly, pregnant women, and infants. In the medical imaging domain, researchers face significant challenges in developing robust models due to data scarcity and data sparsity. Data scarcity, arising from limited access to diverse datasets, complex annotation processes, privacy concerns, and the difficulty of acquiring certain modalities in some patient groups, impedes the development of comprehensive brain tumor segmentation models. Data sparsity, driven by the highly imbalanced distribution between tumor subregions and background levels in annotated labels, complicates accurate segmentation. The study addresses these challenges by generating synthetic T1CE scans from T1 using an image-to-image translation framework, thereby reducing the reliance on hard-to-acquire modalities. A novel patch-based data sampling approach, Adaptive Random Patch Selection (ARPS), is introduced to combat data sparsity, ensuring detailed segmentation of intricate tumor structures while maintaining context through overlapping patches and context-aware sampling strategies. The impact of these synthetic images on segmentation performance is also assessed, emphasizing their role in addressing situations where certain modalities cannot be acquired. When integrated into the nnUNet model, this approach achieves a dice similarity coefficient (DSC) of 86.47, demonstrating its efficacy in handling complex MRI scans of brain tumors. An ablation study is also conducted to assess the individual contributions of the translated images and the proposed data sampling approach. This comprehensive evaluation allows us to understand the effectiveness of ARPS and the potential synergy between multi-modal translation and brain tumor segmentation.
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Affiliation(s)
- Kaliprasad Pani
- Dept. of Computer Science & IT, Jaypee Institute of Information Technology, India.
| | - Indu Chawla
- Dept. of Computer Science & IT, Jaypee Institute of Information Technology, India.
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22
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Verhoeven R, Kupers T, Brunsch CL, Hulscher JBF, Kooi EMW. Using Vital Signs for the Early Prediction of Necrotizing Enterocolitis in Preterm Neonates with Machine Learning. CHILDREN (BASEL, SWITZERLAND) 2024; 11:1452. [PMID: 39767881 PMCID: PMC11674918 DOI: 10.3390/children11121452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 11/22/2024] [Accepted: 11/27/2024] [Indexed: 01/11/2025]
Abstract
BACKGROUND/OBJECTIVES Necrotizing enterocolitis (NEC), a devastating neonatal gastrointestinal disease mostly seen in preterm infants, lacks accurate prediction despite known risk factors. This hinders the possibility of applying targeted preventive therapies. This study explores the use of vital signs, including cerebral and splanchnic oxygenation, measured with near-infrared spectroscopy in early NEC prediction. METHODS Several machine learning algorithms were trained on data from very preterm patients (<30 weeks gestational age). Time Series FeatuRe Extraction on the basis of scalable hypothesis tests (TSFRESH) extracted significant features from the vital signs of the first 5 postnatal days. We present the F1-scores and area under the precision-recall curve (AUC-PR) of the models. The contribution of separate vital signs to the selected TSFRESH features was also determined. RESULTS Among 267 patients, 32 developed NEC Bell's stage > 1. Using a 1:4 NEC:control ratio, support vector machine and logistic regression predicted NEC better than extreme gradient boosting regarding the F1-score (0.82, 0.82, 0.76, resp., p = 0.001) and AUC-PR (0.82, 0.83, 0.77, resp., p < 0.001). Splanchnic and cerebral oxygenation contributed most to the prediction (40.1% and 24.8%, resp.). CONCLUSIONS Using vital signs, we predicted NEC in the first 5 postnatal days with an F1-score up to 0.82. Splanchnic and cerebral oxygenation were the most contributing vital predictors. This pioneering effort in early NEC prediction using vital signs underscores the potential for targeted preventive measures and also emphasizes the need for additional data in future studies.
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Affiliation(s)
- Rosa Verhoeven
- Department of Surgery, Division of Pediatric Surgery, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands; (R.V.); (J.B.F.H.)
- Department of Neonatology, Beatrix Children’s Hospital, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands (C.L.B.)
| | - Thijmen Kupers
- Department of Neonatology, Beatrix Children’s Hospital, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands (C.L.B.)
- Researchable, Zernikepad 12, 9747 AN Groningen, The Netherlands
| | - Celina L. Brunsch
- Department of Neonatology, Beatrix Children’s Hospital, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands (C.L.B.)
| | - Jan B. F. Hulscher
- Department of Surgery, Division of Pediatric Surgery, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands; (R.V.); (J.B.F.H.)
| | - Elisabeth M. W. Kooi
- Department of Neonatology, Beatrix Children’s Hospital, University Medical Center Groningen, University of Groningen, Hanzeplein 1, P.O. Box 30.001, 9700 RB Groningen, The Netherlands (C.L.B.)
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Loper MR, Makary MS. Evolving and Novel Applications of Artificial Intelligence in Abdominal Imaging. Tomography 2024; 10:1814-1831. [PMID: 39590942 PMCID: PMC11598375 DOI: 10.3390/tomography10110133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 11/11/2024] [Accepted: 11/15/2024] [Indexed: 11/28/2024] Open
Abstract
Advancements in artificial intelligence (AI) have significantly transformed the field of abdominal radiology, leading to an improvement in diagnostic and disease management capabilities. This narrative review seeks to evaluate the current standing of AI in abdominal imaging, with a focus on recent literature contributions. This work explores the diagnosis and characterization of hepatobiliary, pancreatic, gastric, colonic, and other pathologies. In addition, the role of AI has been observed to help differentiate renal, adrenal, and splenic disorders. Furthermore, workflow optimization strategies and quantitative imaging techniques used for the measurement and characterization of tissue properties, including radiomics and deep learning, are highlighted. An assessment of how these advancements enable more precise diagnosis, tumor description, and body composition evaluation is presented, which ultimately advances the clinical effectiveness and productivity of radiology. Despite the advancements of AI in abdominal imaging, technical, ethical, and legal challenges persist, and these challenges, as well as opportunities for future development, are highlighted.
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Affiliation(s)
| | - Mina S. Makary
- Department of Radiology, The Ohio State University Wexner Medical Center, Columbus, OH 43210, USA;
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24
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Abhadiomhen SE, Nzeakor EO, Oyibo K. Health Risk Assessment Using Machine Learning: Systematic Review. ELECTRONICS 2024; 13:4405. [DOI: 10.3390/electronics13224405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2024]
Abstract
According to the World Health Organization, chronic illnesses account for over 70% of deaths globally, underscoring the need for effective health risk assessment (HRA). While machine learning (ML) has shown potential in enhancing HRA, no systematic review has explored its application in general health risk assessments. Existing reviews typically focus on specific conditions. This paper reviews published articles that utilize ML for HRA, and it aims to identify the model development methods. A systematic review following Tranfield et al.’s three-stage approach was conducted, and it adhered to the PRISMA protocol. The literature was sourced from five databases, including PubMed. Of the included articles, 42% (11/26) addressed general health risks. Secondary data sources were most common (14/26, 53.85%), while primary data were used in eleven studies, with nine (81.81%) using data from a specific population. Random forest was the most popular algorithm, which was used in nine studies (34.62%). Notably, twelve studies implemented multiple algorithms, while seven studies incorporated model interpretability techniques. Although these studies have shown promise in addressing digital health inequities, more research is needed to include diverse sample populations, particularly from underserved communities, to enhance the generalizability of existing models. Furthermore, model interpretability should be prioritized to ensure transparent, trustworthy, and broadly applicable healthcare solutions.
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Affiliation(s)
- Stanley Ebhohimhen Abhadiomhen
- Department of Electrical Engineering and Computer Science, York University, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
- Department of Computer Science, University of Nigeria, Nsukka 400241, Nigeria
| | - Emmanuel Onyekachukwu Nzeakor
- Department of Electrical Engineering and Computer Science, York University, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
| | - Kiemute Oyibo
- Department of Electrical Engineering and Computer Science, York University, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
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25
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Watson M, Chambers P, Steventon L, Harmsworth King J, Ercia A, Shaw H, Al Moubayed N. From prediction to practice: mitigating bias and data shift in machine-learning models for chemotherapy-induced organ dysfunction across unseen cancers. BMJ ONCOLOGY 2024; 3:e000430. [PMID: 39886186 PMCID: PMC11557724 DOI: 10.1136/bmjonc-2024-000430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 10/07/2024] [Indexed: 02/01/2025]
Abstract
Objectives Routine monitoring of renal and hepatic function during chemotherapy ensures that treatment-related organ damage has not occurred and clearance of subsequent treatment is not hindered; however, frequency and timing are not optimal. Model bias and data heterogeneity concerns have hampered the ability of machine learning (ML) to be deployed into clinical practice. This study aims to develop models that could support individualised decisions on the timing of renal and hepatic monitoring while exploring the effect of data shift on model performance. Methods and analysis We used retrospective data from three UK hospitals to develop and validate ML models predicting unacceptable rises in creatinine/bilirubin post cycle 3 for patients undergoing treatment for the following cancers: breast, colorectal, lung, ovarian and diffuse large B-cell lymphoma. Results We extracted 3614 patients with no missing blood test data across cycles 1-6 of chemotherapy treatment. We improved on previous work by including predictions post cycle 3. Optimised for sensitivity, we achieve F2 scores of 0.7773 (bilirubin) and 0.6893 (creatinine) on unseen data. Performance is consistent on tumour types unseen during training (F2 bilirubin: 0.7423, F2 creatinine: 0.6820). Conclusion Our technique highlights the effectiveness of ML in clinical settings, demonstrating the potential to improve the delivery of care. Notably, our ML models can generalise to unseen tumour types. We propose gold-standard bias mitigation steps for ML models: evaluation on multisite data, thorough patient population analysis, and both formalised bias measures and model performance comparisons on patient subgroups. We demonstrate that data aggregation techniques have unintended consequences on model bias.
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Affiliation(s)
- Matthew Watson
- Department of Computer Science, Durham University, Durham, UK
- Cancer Division, University College London Hospitals NHS Foundation Trust, London, UK
| | - Pinkie Chambers
- Cancer Division, University College London Hospitals NHS Foundation Trust, London, UK
- School of Pharmacy, University College London, London, UK
| | - Luke Steventon
- Cancer Division, University College London Hospitals NHS Foundation Trust, London, UK
- School of Pharmacy, University College London, London, UK
| | | | | | - Heather Shaw
- Cancer Division, University College London Hospitals NHS Foundation Trust, London, UK
- Mount Vernon Cancer Centre, Northwood, UK
| | - Noura Al Moubayed
- Department of Computer Science, Durham University, Durham, UK
- Evergreen Life Ltd, Manchester, UK
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Hesjedal MB, Lysø EH, Solbjør M, Skolbekken JA. Valuing good health care: How medical doctors, scientists and patients relate ethical challenges with artificial intelligence decision-making support tools in prostate cancer diagnostics to good health care. SOCIOLOGY OF HEALTH & ILLNESS 2024; 46:1808-1827. [PMID: 39037701 DOI: 10.1111/1467-9566.13818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 06/24/2024] [Indexed: 07/23/2024]
Abstract
Artificial intelligence (AI) is increasingly used in health care to improve diagnostics and treatment. Decision-making tools intended to help professionals in diagnostic processes are developed in a variety of medical fields. Despite the imagined benefits, AI in health care is contested. Scholars point to ethical and social issues related to the development, implementation, and use of AI in diagnostics. Here, we investigate how three relevant groups construct ethical challenges with AI decision-making tools in prostate cancer (PCa) diagnostics: scientists developing AI decision support tools for interpreting MRI scans for PCa, medical doctors working with PCa and PCa patients. This qualitative study is based on participant observation and interviews with the abovementioned actors. The analysis focuses on how each group draws on their understanding of 'good health care' when discussing ethical challenges, and how they mobilise different registers of valuing in this process. Our theoretical approach is inspired by scholarship on evaluation and justification. We demonstrate how ethical challenges in this area are conceptualised, weighted and negotiated among these participants as processes of valuing good health care and compare their perspectives.
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Affiliation(s)
- Maria Bårdsen Hesjedal
- Department of Public Health and Nursing, Norwegian University of Science and Technology, Trondheim, Norway
| | - Emilie Hybertsen Lysø
- Department of Public Health and Nursing, Norwegian University of Science and Technology, Trondheim, Norway
| | - Marit Solbjør
- Department of Public Health and Nursing, Norwegian University of Science and Technology, Trondheim, Norway
| | - John-Arne Skolbekken
- Department of Public Health and Nursing, Norwegian University of Science and Technology, Trondheim, Norway
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Imam NH. Adversarial Examples on XAI-Enabled DT for Smart Healthcare Systems. SENSORS (BASEL, SWITZERLAND) 2024; 24:6891. [PMID: 39517788 PMCID: PMC11548408 DOI: 10.3390/s24216891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/11/2024] [Accepted: 10/25/2024] [Indexed: 11/16/2024]
Abstract
There have recently been rapid developments in smart healthcare systems, such as precision diagnosis, smart diet management, and drug discovery. These systems require the integration of the Internet of Things (IoT) for data acquisition, Digital Twins (DT) for data representation into a digital replica and Artificial Intelligence (AI) for decision-making. DT is a digital copy or replica of physical entities (e.g., patients), one of the emerging technologies that enable the advancement of smart healthcare systems. AI and Machine Learning (ML) offer great benefits to DT-based smart healthcare systems. They also pose certain risks, including security risks, and bring up issues of fairness, trustworthiness, explainability, and interpretability. One of the challenges that still make the full adaptation of AI/ML in healthcare questionable is the explainability of AI (XAI) and interpretability of ML (IML). Although the study of the explainability and interpretability of AI/ML is now a trend, there is a lack of research on the security of XAI-enabled DT for smart healthcare systems. Existing studies limit their focus to either the security of XAI or DT. This paper provides a brief overview of the research on the security of XAI-enabled DT for smart healthcare systems. It also explores potential adversarial attacks against XAI-enabled DT for smart healthcare systems. Additionally, it proposes a framework for designing XAI-enabled DT for smart healthcare systems that are secure and trusted.
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Affiliation(s)
- Niddal H Imam
- Saudi Electronic University, Prince Muhammad Ibn Salman Rd., Ar Rabi, Ryiadh 11673, Saudi Arabia
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Song Z, Li H, Zhang Y, Zhu C, Jiang M, Song L, Wang Y, Ouyang M, Hu F, Zheng Q. s 2MRI-ADNet: an interpretable deep learning framework integrating Euclidean-graph representations of Alzheimer's disease solely from structural MRI. MAGMA (NEW YORK, N.Y.) 2024; 37:845-857. [PMID: 38869733 DOI: 10.1007/s10334-024-01178-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 05/19/2024] [Accepted: 06/04/2024] [Indexed: 06/14/2024]
Abstract
OBJECTIVE To establish a multi-dimensional representation solely on structural MRI (sMRI) for early diagnosis of AD. METHODS A total of 3377 participants' sMRI from four independent databases were retrospectively identified to construct an interpretable deep learning model that integrated multi-dimensional representations of AD solely on sMRI (called s2MRI-ADNet) by a dual-channel learning strategy of gray matter volume (GMV) from Euclidean space and the regional radiomics similarity network (R2SN) from graph space. Specifically, the GMV feature map learning channel (called GMV-Channel) was to take into consideration spatial information of both long-range spatial relations and detailed localization information, while the node feature and connectivity strength learning channel (called NFCS-Channel) was to characterize the graph-structured R2SN network by a separable learning strategy. RESULTS The s2MRI-ADNet achieved a superior classification accuracy of 92.1% and 91.4% under intra-database and inter-database cross-validation. The GMV-Channel and NFCS-Channel captured complementary group-discriminative brain regions, revealing a complementary interpretation of the multi-dimensional representation of brain structure in Euclidean and graph spaces respectively. Besides, the generalizable and reproducible interpretation of the multi-dimensional representation in capturing complementary group-discriminative brain regions revealed a significant correlation between the four independent databases (p < 0.05). Significant associations (p < 0.05) between attention scores and brain abnormality, between classification scores and clinical measure of cognitive ability, CSF biomarker, metabolism, and genetic risk score also provided solid neurobiological interpretation. CONCLUSION The s2MRI-ADNet solely on sMRI could leverage the complementary multi-dimensional representations of AD in Euclidean and graph spaces, and achieved superior performance in the early diagnosis of AD, facilitating its potential in both clinical translation and popularization.
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Affiliation(s)
- Zhiwei Song
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China
| | - Honglun Li
- Department of Radiology, Yantai Yuhuangding Hospital Affiliated with Qingdao University Medical College, Yantai, 264099, China
| | - Yiyu Zhang
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China
| | - Chuanzhen Zhu
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China
| | - Minbo Jiang
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China
| | - Limei Song
- School of Medical Imaging, Weifang Medical University, Weifang, 261000, China
| | - Yi Wang
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China
- Key Laboratory of Medical Imaging and Artificial Intelligence of Hunan Province, Xiangnan University, Chenzhou, 423000, Hunan, China
| | - Minhui Ouyang
- Department of Radiology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Fang Hu
- Key Laboratory of Medical Imaging and Artificial Intelligence of Hunan Province, Xiangnan University, Chenzhou, 423000, Hunan, China
| | - Qiang Zheng
- School of Computer and Control Engineering, Yantai University, Yantai, 264005, China.
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Sadeghi P, Karimi H, Lavafian A, Rashedi R, Samieefar N, Shafiekhani S, Rezaei N. Machine learning and artificial intelligence within pediatric autoimmune diseases: applications, challenges, future perspective. Expert Rev Clin Immunol 2024; 20:1219-1236. [PMID: 38771915 DOI: 10.1080/1744666x.2024.2359019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 05/20/2024] [Indexed: 05/23/2024]
Abstract
INTRODUCTION Autoimmune disorders affect 4.5% to 9.4% of children, significantly reducing their quality of life. The diagnosis and prognosis of autoimmune diseases are uncertain because of the variety of onset and development. Machine learning can identify clinically relevant patterns from vast amounts of data. Hence, its introduction has been beneficial in the diagnosis and management of patients. AREAS COVERED This narrative review was conducted through searching various electronic databases, including PubMed, Scopus, and Web of Science. This study thoroughly explores the current knowledge and identifies the remaining gaps in the applications of machine learning specifically in the context of pediatric autoimmune and related diseases. EXPERT OPINION Machine learning algorithms have the potential to completely change how pediatric autoimmune disorders are identified, treated, and managed. Machine learning can assist physicians in making more precise and fast judgments, identifying new biomarkers and therapeutic targets, and personalizing treatment strategies for each patient by utilizing massive datasets and powerful analytics.
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Affiliation(s)
- Parniyan Sadeghi
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- Student Research Committee, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Hanie Karimi
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
| | - Atiye Lavafian
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- School of Medicine, Semnan University of Medical Science, Semnan, Iran
| | - Ronak Rashedi
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- USERN Office, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Noosha Samieefar
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- USERN Office, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Sajad Shafiekhani
- Department of Biomedical Engineering, Buein Zahra Technical University, Qazvin, Iran
| | - Nima Rezaei
- Network of Interdisciplinarity in Neonates and Infants (NINI), Universal Scientific Education and Research Network (USERN), Tehran, Iran
- Research Center for Immunodeficiencies, Children's Medical Center, Tehran University of Medical Sciences, Tehran, Iran
- Department of Immunology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
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Theocharopoulos C, Davakis S, Ziogas DC, Theocharopoulos A, Foteinou D, Mylonakis A, Katsaros I, Gogas H, Charalabopoulos A. Deep Learning for Image Analysis in the Diagnosis and Management of Esophageal Cancer. Cancers (Basel) 2024; 16:3285. [PMID: 39409906 PMCID: PMC11475041 DOI: 10.3390/cancers16193285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2024] [Revised: 09/21/2024] [Accepted: 09/24/2024] [Indexed: 10/20/2024] Open
Abstract
Esophageal cancer has a dismal prognosis and necessitates a multimodal and multidisciplinary approach from diagnosis to treatment. High-definition white-light endoscopy and histopathological confirmation remain the gold standard for the definitive diagnosis of premalignant and malignant lesions. Artificial intelligence using deep learning (DL) methods for image analysis constitutes a promising adjunct for the clinical endoscopist that could effectively decrease BE overdiagnosis and unnecessary surveillance, while also assisting in the timely detection of dysplastic BE and esophageal cancer. A plethora of studies published during the last five years have consistently reported highly accurate DL algorithms with comparable or superior performance compared to endoscopists. Recent efforts aim to expand DL utilization into further aspects of esophageal neoplasia management including histologic diagnosis, segmentation of gross tumor volume, pretreatment prediction and post-treatment evaluation of patient response to systemic therapy and operative guidance during minimally invasive esophagectomy. Our manuscript serves as an introduction to the growing literature of DL applications for image analysis in the management of esophageal neoplasia, concisely presenting all currently published studies. We also aim to guide the clinician across basic functional principles, evaluation metrics and limitations of DL for image recognition to facilitate the comprehension and critical evaluation of the presented studies.
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Affiliation(s)
| | - Spyridon Davakis
- First Department of Surgery, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (S.D.); (A.M.); (I.K.); (A.C.)
| | - Dimitrios C. Ziogas
- First Department of Medicine, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (D.C.Z.); (D.F.); (H.G.)
| | - Achilleas Theocharopoulos
- Department of Electrical and Computer Engineering, National Technical University of Athens, 10682 Athens, Greece;
| | - Dimitra Foteinou
- First Department of Medicine, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (D.C.Z.); (D.F.); (H.G.)
| | - Adam Mylonakis
- First Department of Surgery, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (S.D.); (A.M.); (I.K.); (A.C.)
| | - Ioannis Katsaros
- First Department of Surgery, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (S.D.); (A.M.); (I.K.); (A.C.)
| | - Helen Gogas
- First Department of Medicine, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (D.C.Z.); (D.F.); (H.G.)
| | - Alexandros Charalabopoulos
- First Department of Surgery, School of Medicine, Laiko General Hospital, National and Kapodistrian University of Athens, 11527 Athens, Greece; (S.D.); (A.M.); (I.K.); (A.C.)
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Alzubaidi L, Al-Dulaimi K, Salhi A, Alammar Z, Fadhel MA, Albahri AS, Alamoodi AH, Albahri OS, Hasan AF, Bai J, Gilliland L, Peng J, Branni M, Shuker T, Cutbush K, Santamaría J, Moreira C, Ouyang C, Duan Y, Manoufali M, Jomaa M, Gupta A, Abbosh A, Gu Y. Comprehensive review of deep learning in orthopaedics: Applications, challenges, trustworthiness, and fusion. Artif Intell Med 2024; 155:102935. [PMID: 39079201 DOI: 10.1016/j.artmed.2024.102935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 03/18/2024] [Accepted: 07/22/2024] [Indexed: 08/24/2024]
Abstract
Deep learning (DL) in orthopaedics has gained significant attention in recent years. Previous studies have shown that DL can be applied to a wide variety of orthopaedic tasks, including fracture detection, bone tumour diagnosis, implant recognition, and evaluation of osteoarthritis severity. The utilisation of DL is expected to increase, owing to its ability to present accurate diagnoses more efficiently than traditional methods in many scenarios. This reduces the time and cost of diagnosis for patients and orthopaedic surgeons. To our knowledge, no exclusive study has comprehensively reviewed all aspects of DL currently used in orthopaedic practice. This review addresses this knowledge gap using articles from Science Direct, Scopus, IEEE Xplore, and Web of Science between 2017 and 2023. The authors begin with the motivation for using DL in orthopaedics, including its ability to enhance diagnosis and treatment planning. The review then covers various applications of DL in orthopaedics, including fracture detection, detection of supraspinatus tears using MRI, osteoarthritis, prediction of types of arthroplasty implants, bone age assessment, and detection of joint-specific soft tissue disease. We also examine the challenges for implementing DL in orthopaedics, including the scarcity of data to train DL and the lack of interpretability, as well as possible solutions to these common pitfalls. Our work highlights the requirements to achieve trustworthiness in the outcomes generated by DL, including the need for accuracy, explainability, and fairness in the DL models. We pay particular attention to fusion techniques as one of the ways to increase trustworthiness, which have also been used to address the common multimodality in orthopaedics. Finally, we have reviewed the approval requirements set forth by the US Food and Drug Administration to enable the use of DL applications. As such, we aim to have this review function as a guide for researchers to develop a reliable DL application for orthopaedic tasks from scratch for use in the market.
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Affiliation(s)
- Laith Alzubaidi
- School of Mechanical, Medical, and Process Engineering, Queensland University of Technology, Brisbane, QLD 4000, Australia; QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia.
| | - Khamael Al-Dulaimi
- Computer Science Department, College of Science, Al-Nahrain University, Baghdad, Baghdad 10011, Iraq; School of Electrical Engineering and Robotics, Queensland University of Technology, Brisbane, QLD 4000, Australia
| | - Asma Salhi
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - Zaenab Alammar
- School of Computer Science, Queensland University of Technology, Brisbane, QLD 4000, Australia
| | - Mohammed A Fadhel
- Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - A S Albahri
- Technical College, Imam Ja'afar Al-Sadiq University, Baghdad, Iraq
| | - A H Alamoodi
- Institute of Informatics and Computing in Energy, Universiti Tenaga Nasional, Kajang 43000, Malaysia
| | - O S Albahri
- Australian Technical and Management College, Melbourne, Australia
| | - Amjad F Hasan
- Faculty of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA
| | - Jinshuai Bai
- School of Mechanical, Medical, and Process Engineering, Queensland University of Technology, Brisbane, QLD 4000, Australia; QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia
| | - Luke Gilliland
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - Jing Peng
- Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - Marco Branni
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - Tristan Shuker
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; St Andrew's War Memorial Hospital, Brisbane, QLD 4000, Australia
| | - Kenneth Cutbush
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; St Andrew's War Memorial Hospital, Brisbane, QLD 4000, Australia
| | - Jose Santamaría
- Department of Computer Science, University of Jaén, Jaén 23071, Spain
| | - Catarina Moreira
- Data Science Institute, University of Technology Sydney, Australia
| | - Chun Ouyang
- School of Information Systems, Queensland University of Technology, Brisbane, QLD 4000, Australia
| | - Ye Duan
- School of Computing, Clemson University, Clemson, 29631, SC, USA
| | - Mohamed Manoufali
- CSIRO, Kensington, WA 6151, Australia; School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, QLD 4067, Australia
| | - Mohammad Jomaa
- QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; St Andrew's War Memorial Hospital, Brisbane, QLD 4000, Australia
| | - Ashish Gupta
- School of Mechanical, Medical, and Process Engineering, Queensland University of Technology, Brisbane, QLD 4000, Australia; QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia; Research and Development department, Akunah Med Technology Pty Ltd Co, Brisbane, QLD 4120, Australia
| | - Amin Abbosh
- School of Information Technology and Electrical Engineering, The University of Queensland, Brisbane, QLD 4067, Australia
| | - Yuantong Gu
- School of Mechanical, Medical, and Process Engineering, Queensland University of Technology, Brisbane, QLD 4000, Australia; QUASR/ARC Industrial Transformation Training Centre-Joint Biomechanics, Queensland University of Technology, Brisbane, QLD 4000, Australia
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Chen Z, Liang N, Li H, Zhang H, Li H, Yan L, Hu Z, Chen Y, Zhang Y, Wang Y, Ke D, Shi N. Exploring explainable AI features in the vocal biomarkers of lung disease. Comput Biol Med 2024; 179:108844. [PMID: 38981214 DOI: 10.1016/j.compbiomed.2024.108844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 05/15/2024] [Accepted: 06/04/2024] [Indexed: 07/11/2024]
Abstract
This review delves into the burgeoning field of explainable artificial intelligence (XAI) in the detection and analysis of lung diseases through vocal biomarkers. Lung diseases, often elusive in their early stages, pose a significant public health challenge. Recent advancements in AI have ushered in innovative methods for early detection, yet the black-box nature of many AI models limits their clinical applicability. XAI emerges as a pivotal tool, enhancing transparency and interpretability in AI-driven diagnostics. This review synthesizes current research on the application of XAI in analyzing vocal biomarkers for lung diseases, highlighting how these techniques elucidate the connections between specific vocal features and lung pathology. We critically examine the methodologies employed, the types of lung diseases studied, and the performance of various XAI models. The potential for XAI to aid in early detection, monitor disease progression, and personalize treatment strategies in pulmonary medicine is emphasized. Furthermore, this review identifies current challenges, including data heterogeneity and model generalizability, and proposes future directions for research. By offering a comprehensive analysis of explainable AI features in the context of lung disease detection, this review aims to bridge the gap between advanced computational approaches and clinical practice, paving the way for more transparent, reliable, and effective diagnostic tools.
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Affiliation(s)
- Zhao Chen
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Ning Liang
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Haoyuan Li
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Haili Zhang
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Huizhen Li
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Lijiao Yan
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Ziteng Hu
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yaxin Chen
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yujing Zhang
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yanping Wang
- Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China
| | - Dandan Ke
- Special Disease Clinic, Huaishuling Branch of Beijing Fengtai Hospital of Integrated Traditional Chinese and Western Medicine, Beijing, China.
| | - Nannan Shi
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China; Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, China.
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Rawshani A, Hessulf F, Deminger J, Sultanian P, Gupta V, Lundgren P, Mohammed M, Abu Alchay M, Siöland T, Gryska E, Piasecki A. Prediction of neurologic outcome after out-of-hospital cardiac arrest: An interpretable approach with machine learning. Resuscitation 2024; 202:110359. [PMID: 39142467 DOI: 10.1016/j.resuscitation.2024.110359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 08/02/2024] [Accepted: 08/08/2024] [Indexed: 08/16/2024]
Abstract
Out-of-hospital cardiac arrest (OHCA) is a critical condition with low survival rates. In patients with a return of spontaneous circulation, brain injury is a leading cause of death. In this study, we propose an interpretable machine learning approach for predicting neurologic outcome after OHCA, using information available at the time of hospital admission. METHODS The study population were 55 615 OHCA cases registered in the Swedish Cardiopulmonary Resuscitation Registry between 2010 and 2020. The dataset was split to training and validation sets (for model development) and test set (for evaluation of the final model). We used an XGBoost algorithm with stratified, repeated 10-fold cross-validation along with Optuna framework for hyperparameters tuning. The final model was trained on 10 features selected based on the importance scores and evaluated on the test set in terms of discrimination, calibration and bias-variance tradeoff. We used SHapley Additive exPlanations to address the 'black-box' model and align with eXplainable artificial intelligence. RESULTS The final model achieved: area under the receiver operating characteristic value 0.964 (95% confidence interval (CI) [0.960-0.968]), sensitivity 0.606 (95% CI [0.573-0.634]), specificity 0.975 (95% CI [0.972-0.978]), positive predictive value (PPV) 0.664 (95% CI [0.625-0.696]), negative predictive value (NPV) 0.969 (95% CI [0.966-0.972]), macro F1 0.803 (95% CI [0.788-0.816]), and showed a very good calibration. SHAP features with the highest impact on the model's output were:'ROSC on arrival to hospital', 'Initial rhythm asystole' and 'Conscious on arrival to hospital'. CONCLUSIONS The XGBoost machine learning model with 10 features available at the time of hospital admission showed good performance for predicting neurologic outcome after OHCA, with no apparent signs of overfitting.
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Affiliation(s)
- Araz Rawshani
- Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, Wallenberg Laboratory, Blå stråket 5, Sahlgrenska University Hospital, 413 45 Gothenburg, Sweden; Department of Cardiology, Sahlgrenska University Hospital, Blå stråket 5, 413 45 Gothenburg, Sweden; The Swedish Registry for Cardiopulmonary Resuscitation, Medicinaregatan 18G, 413 90 Gothenburg, Sweden
| | - Fredrik Hessulf
- Department of Anesthesiology and Intensive Care, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Blå stråket 5, 413 45 Gothenburg, Sweden; Department of Anesthesiology and Intensive Care, Sahlgrenska University Hospital, Göteborgsvägen 31, 431 30 Mölndal, Sweden
| | - John Deminger
- Department of Medicine and Emergency Care, Sahlgrenska University Hospital, Göteborgsvägen 33, 431 30 Mölndal, Sweden
| | - Pedram Sultanian
- Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, Wallenberg Laboratory, Blå stråket 5, Sahlgrenska University Hospital, 413 45 Gothenburg, Sweden
| | - Vibha Gupta
- Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, Wallenberg Laboratory, Blå stråket 5, Sahlgrenska University Hospital, 413 45 Gothenburg, Sweden
| | - Peter Lundgren
- Department of Molecular and Clinical Medicine, Institute of Medicine, University of Gothenburg, Wallenberg Laboratory, Blå stråket 5, Sahlgrenska University Hospital, 413 45 Gothenburg, Sweden; Department of Cardiology, Sahlgrenska University Hospital, Blå stråket 5, 413 45 Gothenburg, Sweden
| | - Mohammed Mohammed
- Department of Cardiology, Sahlgrenska University Hospital, Blå stråket 5, 413 45 Gothenburg, Sweden
| | - Monér Abu Alchay
- Department of Cardiology, Sahlgrenska University Hospital, Blå stråket 5, 413 45 Gothenburg, Sweden
| | - Tobias Siöland
- Department of Anesthesiology and Intensive Care, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Blå stråket 5, 413 45 Gothenburg, Sweden; Department of Anesthesiology and Intensive Care, Sahlgrenska University Hospital, Göteborgsvägen 31, 431 30 Mölndal, Sweden
| | - Emilia Gryska
- Department of Hand Surgery, Sahlgrenska University Hospital, Göteborgsvägen 31, 431 30 Mölndal, Sweden; Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
| | - Adam Piasecki
- Department of Anesthesiology and Intensive Care, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Blå stråket 5, 413 45 Gothenburg, Sweden; Department of Anesthesiology and Intensive Care, Sahlgrenska University Hospital, Göteborgsvägen 31, 431 30 Mölndal, Sweden.
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Ghofrani-Jahromi M, Poudel GR, Razi A, Abeyasinghe PM, Paulsen JS, Tabrizi SJ, Saha S, Georgiou-Karistianis N. Prognostic enrichment for early-stage Huntington's disease: An explainable machine learning approach for clinical trial. Neuroimage Clin 2024; 43:103650. [PMID: 39142216 PMCID: PMC11367643 DOI: 10.1016/j.nicl.2024.103650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 07/11/2024] [Accepted: 07/31/2024] [Indexed: 08/16/2024]
Abstract
BACKGROUND In Huntington's disease clinical trials, recruitment and stratification approaches primarily rely on genetic load, cognitive and motor assessment scores. They focus less on in vivo brain imaging markers, which reflect neuropathology well before clinical diagnosis. Machine learning methods offer a degree of sophistication which could significantly improve prognosis and stratification by leveraging multimodal biomarkers from large datasets. Such models specifically tailored to HD gene expansion carriers could further enhance the efficacy of the stratification process. OBJECTIVES To improve stratification of Huntington's disease individuals for clinical trials. METHODS We used data from 451 gene positive individuals with Huntington's disease (both premanifest and diagnosed) from previously published cohorts (PREDICT, TRACK, TrackON, and IMAGE). We applied whole-brain parcellation to longitudinal brain scans and measured the rate of lateral ventricular enlargement, over 3 years, which was used as the target variable for our prognostic random forest regression models. The models were trained on various combinations of features at baseline, including genetic load, cognitive and motor assessment score biomarkers, as well as brain imaging-derived features. Furthermore, a simplified stratification model was developed to classify individuals into two homogenous groups (low risk and high risk) based on their anticipated rate of ventricular enlargement. RESULTS The predictive accuracy of the prognostic models substantially improved by integrating brain imaging features alongside genetic load, cognitive and motor biomarkers: a 24 % reduction in the cross-validated mean absolute error, yielding an error of 530 mm3/year. The stratification model had a cross-validated accuracy of 81 % in differentiating between moderate and fast progressors (precision = 83 %, recall = 80 %). CONCLUSIONS This study validated the effectiveness of machine learning in differentiating between low- and high-risk individuals based on the rate of ventricular enlargement. The models were exclusively trained using features from HD individuals, which offers a more disease-specific, simplified, and accurate approach for prognostic enrichment compared to relying on features extracted from healthy control groups, as done in previous studies. The proposed method has the potential to enhance clinical utility by: i) enabling more targeted recruitment of individuals for clinical trials, ii) improving post-hoc evaluation of individuals, and iii) ultimately leading to better outcomes for individuals through personalized treatment selection.
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Affiliation(s)
| | - Govinda R Poudel
- Mary MacKillop Institute for Health Research, Australian Catholic University, Melbourne VIC3000, Australia
| | - Adeel Razi
- Turner Institute for Brain and Mental Health, Monash University, Clayton VIC3800, Australia
| | - Pubu M Abeyasinghe
- Turner Institute for Brain and Mental Health, Monash University, Clayton VIC3800, Australia
| | - Jane S Paulsen
- Department of Neurology, University of Wisconsin-Madison, 1685 Highland Avenue, Madison, WI, USA
| | - Sarah J Tabrizi
- UCL Huntington's Disease Centre, UCL Queen Square Institute of Neurology, UK Dementia Research Institute, Department of Neurodegenerative Diseases, University College London, London, UK
| | - Susmita Saha
- Turner Institute for Brain and Mental Health, Monash University, Clayton VIC3800, Australia
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Zheng X, Lamoth CJ, Timmerman H, Otten E, Reneman MF. Establishing central sensitization inventory cut-off values in Dutch-speaking patients with chronic low back pain by unsupervised machine learning. Comput Biol Med 2024; 178:108739. [PMID: 38875910 DOI: 10.1016/j.compbiomed.2024.108739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 05/29/2024] [Accepted: 06/08/2024] [Indexed: 06/16/2024]
Abstract
BACKGROUND Human Assumed Central Sensitization (HACS) is involved in the development and maintenance of chronic low back pain (CLBP). The Central Sensitization Inventory (CSI) was developed to evaluate the presence of HACS, with a cut-off value of 40/100. However, various factors including pain conditions (e.g., CLBP), contexts, and gender may influence this cut-off value. Unsupervised clustering approaches can address these complexities by considering diverse factors and exploring possible HACS-related subgroups. Therefore, this study aimed to determine the cut-off values for a Dutch-speaking population with CLBP based on unsupervised machine learning. METHODS Questionnaire data covering pain, physical, and psychological aspects were collected from patients with CLBP and aged-matched healthy controls (HC). Four clustering approaches were applied to identify HACS-related subgroups based on the questionnaire data and gender. The clustering performance was assessed using internal and external indicators. Subsequently, receiver operating characteristic (ROC) analysis was conducted on the best clustering results to determine the optimal cut-off values. RESULTS The study included 63 HCs and 88 patients with CLBP. Hierarchical clustering yielded the best results, identifying three clusters: healthy group, CLBP with low HACS level, and CLBP with high HACS level groups. The cut-off value for the overall groups were 35 (sensitivity 0.76, specificity 0.76). CONCLUSION This study found distinct patient subgroups. An overall CSI cut-off value of 35 was suggested. This study may provide new insights into identifying HACS-related patterns and contributes to establishing accurate cut-off values.
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Affiliation(s)
- Xiaoping Zheng
- University of Groningen, University Medical Center Groningen, Department of Human Movement Sciences, Groningen, the Netherlands
| | - Claudine Jc Lamoth
- University of Groningen, University Medical Center Groningen, Department of Human Movement Sciences, Groningen, the Netherlands
| | - Hans Timmerman
- University of Groningen, University Medical Center Groningen, Department of Anesthesiology, Pain Center, Groningen, the Netherlands
| | - Egbert Otten
- University of Groningen, University Medical Center Groningen, Department of Human Movement Sciences, Groningen, the Netherlands
| | - Michiel F Reneman
- University of Groningen, University Medical Center Groningen, Department of Rehabilitation Medicine, Groningen, the Netherlands.
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Jain H, Marsool MDM, Odat RM, Noori H, Jain J, Shakhatreh Z, Patel N, Goyal A, Gole S, Passey S. Emergence of Artificial Intelligence and Machine Learning Models in Sudden Cardiac Arrest: A Comprehensive Review of Predictive Performance and Clinical Decision Support. Cardiol Rev 2024:00045415-990000000-00260. [PMID: 38836621 DOI: 10.1097/crd.0000000000000708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
Sudden cardiac death/sudden cardiac arrest (SCD/SCA) is an increasingly prevalent cause of mortality globally, particularly in individuals with preexisting cardiac conditions. The ambiguous premortem warnings and the restricted interventional window related to SCD account for the complexity of the condition. Current reports suggest SCD to be accountable for 20% of all deaths hence accurately predicting SCD risk is an imminent concern. Traditional approaches for predicting SCA, particularly "track-and-trigger" warning systems have demonstrated considerable inadequacies, including low sensitivity, false alarms, decreased diagnostic liability, reliance on clinician involvement, and human errors. Artificial intelligence (AI) and machine learning (ML) models have demonstrated near-perfect accuracy in predicting SCA risk, allowing clinicians to intervene timely. Given the constraints of current diagnostics, exploring the benefits of AI and ML models in enhancing outcomes for SCA/SCD is imperative. This review article aims to investigate the efficacy of AI and ML models in predicting and managing SCD, particularly targeting accuracy in prediction.
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Affiliation(s)
- Hritvik Jain
- From the Department of Internal Medicine, All India Institte of Medical Sciences (AIIMS), Jodhpur, India
| | | | - Ramez M Odat
- Department of Internal Medicine, Faculty of Medicine, Jordan University of Science and Technology, Irbid, Jordan
| | - Hamid Noori
- Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
| | - Jyoti Jain
- From the Department of Internal Medicine, All India Institte of Medical Sciences (AIIMS), Jodhpur, India
| | - Zaid Shakhatreh
- Department of Internal Medicine, Faculty of Medicine, Jordan University of Science and Technology, Irbid, Jordan
| | - Nandan Patel
- From the Department of Internal Medicine, All India Institte of Medical Sciences (AIIMS), Jodhpur, India
| | - Aman Goyal
- Department of Internal Medicine, Seth GS Medical College and KEM Hospital, Mumbai, India
| | - Shrey Gole
- Department of Immunology and Rheumatology, Stanford University, CA; and
| | - Siddhant Passey
- Department of Internal Medicine, University of Connecticut Health Center, CT
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Tavares J. Application of Artificial Intelligence in Healthcare: The Need for More Interpretable Artificial Intelligence. ACTA MEDICA PORT 2024; 37:411-414. [PMID: 38577873 DOI: 10.20344/amp.20469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Accepted: 12/27/2023] [Indexed: 04/06/2024]
Affiliation(s)
- Jorge Tavares
- NOVA Information Management School (NOVA IMS). Universidade NOVA de Lisboa. Lisbon. Portugal
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Chen Z, Wang Y, Ying MTC, Su Z. Interpretable machine learning model integrating clinical and elastosonographic features to detect renal fibrosis in Asian patients with chronic kidney disease. J Nephrol 2024; 37:1027-1039. [PMID: 38315278 PMCID: PMC11239734 DOI: 10.1007/s40620-023-01878-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 12/26/2023] [Indexed: 02/07/2024]
Abstract
BACKGROUND Non-invasive renal fibrosis assessment is critical for tailoring personalized decision-making and managing follow-up in patients with chronic kidney disease (CKD). We aimed to exploit machine learning algorithms using clinical and elastosonographic features to distinguish moderate-severe fibrosis from mild fibrosis among CKD patients. METHODS A total of 162 patients with CKD who underwent shear wave elastography examinations and renal biopsies at our institution were prospectively enrolled. Four classifiers using machine learning algorithms, including eXtreme Gradient Boosting (XGBoost), Support Vector Machine (SVM), Light Gradient Boosting Machine (LightGBM), and K-Nearest Neighbor (KNN), which integrated elastosonographic features and clinical characteristics, were established to differentiate moderate-severe renal fibrosis from mild forms. The area under the receiver operating characteristic curve (AUC) and average precision were employed to compare the performance of constructed models, and the SHapley Additive exPlanations (SHAP) strategy was used to visualize and interpret the model output. RESULTS The XGBoost model outperformed the other developed machine learning models, demonstrating optimal diagnostic performance in both the primary (AUC = 0.97, 95% confidence level (CI) 0.94-0.99; average precision = 0.97, 95% CI 0.97-0.98) and five-fold cross-validation (AUC = 0.85, 95% CI 0.73-0.98; average precision = 0.90, 95% CI 0.86-0.93) datasets. The SHAP approach provided visual interpretation for XGBoost, highlighting the features' impact on the diagnostic process, wherein the estimated glomerular filtration rate provided the largest contribution to the model output, followed by the elastic modulus, then renal length, renal resistive index, and hypertension. CONCLUSION This study proposed an XGBoost model for distinguishing moderate-severe renal fibrosis from mild forms in CKD patients, which could be used to assist clinicians in decision-making and follow-up strategies. Moreover, the SHAP algorithm makes it feasible to visualize and interpret the feature processing and diagnostic processes of the model output.
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Affiliation(s)
- Ziman Chen
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Kowloon, Hong Kong.
| | - Yingli Wang
- Ultrasound Department, EDAN Instruments, Inc., Shenzhen, China
| | - Michael Tin Cheung Ying
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Kowloon, Hong Kong.
| | - Zhongzhen Su
- Department of Ultrasound, Fifth Affiliated Hospital of Sun Yat-Sen University, Zhuhai, China
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Messinis S, Temenos N, Protonotarios NE, Rallis I, Kalogeras D, Doulamis N. Enhancing Internet of Medical Things security with artificial intelligence: A comprehensive review. Comput Biol Med 2024; 170:108036. [PMID: 38295478 DOI: 10.1016/j.compbiomed.2024.108036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/08/2024] [Accepted: 01/26/2024] [Indexed: 02/02/2024]
Abstract
Over the past five years, interest in the literature regarding the security of the Internet of Medical Things (IoMT) has increased. Due to the enhanced interconnectedness of IoMT devices, their susceptibility to cyber-attacks has proportionally escalated. Motivated by the promising potential of AI-related technologies to improve certain cybersecurity measures, we present a comprehensive review of this emerging field. In this review, we attempt to bridge the corresponding literature gap regarding modern cybersecurity technologies that deploy AI techniques to improve their performance and compensate for security and privacy vulnerabilities. In this direction, we have systematically gathered and classified the extensive research on this topic. Our findings highlight the fact that the integration of machine learning (ML) and deep learning (DL) techniques improves both the performance of cybersecurity measures and their speed, reliability, and effectiveness. This may be proven to be useful for improving the security and privacy of IoMT devices. Furthermore, by considering the numerous advantages of AI technologies as opposed to their core cybersecurity counterparts, including blockchain, anomaly detection, homomorphic encryption, differential privacy, federated learning, and so on, we provide a structured overview of the current scientific trends. We conclude with considerations for future research, emphasizing the promising potential of AI-driven cybersecurity in the IoMT landscape, especially in patient data protection and in data-driven healthcare.
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Affiliation(s)
- Sotirios Messinis
- Institute of Communication and Computer Systems (ICCS), National Technical University of Athens, Athens, 15780, Greece.
| | - Nikos Temenos
- School of Rural, Surveying and Geoinformatics Engineering, National Technical University of Athens, Athens, 15780, Greece.
| | | | - Ioannis Rallis
- School of Rural, Surveying and Geoinformatics Engineering, National Technical University of Athens, Athens, 15780, Greece.
| | - Dimitrios Kalogeras
- Institute of Communication and Computer Systems (ICCS), National Technical University of Athens, Athens, 15780, Greece.
| | - Nikolaos Doulamis
- School of Rural, Surveying and Geoinformatics Engineering, National Technical University of Athens, Athens, 15780, Greece.
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Qi-Yu J, Wen-Heng H, Jia-Fen L, Xiao-Sheng S. A novel intelligent model for visualized inference of medical diagnosis: A case of TCM. Artif Intell Med 2024; 149:102799. [PMID: 38462291 DOI: 10.1016/j.artmed.2024.102799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 01/16/2024] [Accepted: 02/03/2024] [Indexed: 03/12/2024]
Abstract
How to present an intelligent model based on known diagnostic knowledge to assist medical diagnosis and display the reasoning process is an interesting issue worth exploring. This study developed a novel intelligent model for visualized inference of medical diagnosis with a case of Traditional Chinese Medicine (TCM). Four classes of TCM's diagnosis composed of Yin deficiency, Liver Yin deficiency, Kidney Yin deficiency, and Liver-Kidney Yin deficiency were selected as research examples. According to the knowledge of diagnostic points in "Diagnostics of TCM", a total of 2000 samples for training and testing were randomly generated for the four classes of TCM's diagnosis. In addition, a total of 60 clinical samples were collected from hospital clinical cases. Training samples were sent to the pre-training language model of Chinese Bert for training to generate intelligent diagnostic module. Simultaneously, a mathematical algorithm was developed to generate inferential digraphs. In order to evaluate the performance of the model, the values of accuracy, F1 score, Mse, Loss and other indicators were calculated for model training and testing. And the confusion matrices and ROC curves were plotted to estimate the predictive ability of the model. The novel model was also compared with RF and XGBOOST. And some instances of inferential digraphs with the model were displayed and analyzed. It may be a new attempt to solve the problem of interpretable and inferential intelligent models in the field of artificial intelligence on medical diagnosis of TCM.
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Affiliation(s)
- Jiang Qi-Yu
- Guangzhou University of Chinese Medicine, Guangzhou 510405, China.
| | | | - Liang Jia-Fen
- Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou 510120, China
| | - Sun Xiao-Sheng
- Guangzhou University of Chinese Medicine, Guangzhou 510405, China.
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Marques L, Costa B, Pereira M, Silva A, Santos J, Saldanha L, Silva I, Magalhães P, Schmidt S, Vale N. Advancing Precision Medicine: A Review of Innovative In Silico Approaches for Drug Development, Clinical Pharmacology and Personalized Healthcare. Pharmaceutics 2024; 16:332. [PMID: 38543226 PMCID: PMC10975777 DOI: 10.3390/pharmaceutics16030332] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 02/21/2024] [Accepted: 02/25/2024] [Indexed: 11/12/2024] Open
Abstract
The landscape of medical treatments is undergoing a transformative shift. Precision medicine has ushered in a revolutionary era in healthcare by individualizing diagnostics and treatments according to each patient's uniquely evolving health status. This groundbreaking method of tailoring disease prevention and treatment considers individual variations in genes, environments, and lifestyles. The goal of precision medicine is to target the "five rights": the right patient, the right drug, the right time, the right dose, and the right route. In this pursuit, in silico techniques have emerged as an anchor, driving precision medicine forward and making this a realistic and promising avenue for personalized therapies. With the advancements in high-throughput DNA sequencing technologies, genomic data, including genetic variants and their interactions with each other and the environment, can be incorporated into clinical decision-making. Pharmacometrics, gathering pharmacokinetic (PK) and pharmacodynamic (PD) data, and mathematical models further contribute to drug optimization, drug behavior prediction, and drug-drug interaction identification. Digital health, wearables, and computational tools offer continuous monitoring and real-time data collection, enabling treatment adjustments. Furthermore, the incorporation of extensive datasets in computational tools, such as electronic health records (EHRs) and omics data, is also another pathway to acquire meaningful information in this field. Although they are fairly new, machine learning (ML) algorithms and artificial intelligence (AI) techniques are also resources researchers use to analyze big data and develop predictive models. This review explores the interplay of these multiple in silico approaches in advancing precision medicine and fostering individual healthcare. Despite intrinsic challenges, such as ethical considerations, data protection, and the need for more comprehensive research, this marks a new era of patient-centered healthcare. Innovative in silico techniques hold the potential to reshape the future of medicine for generations to come.
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Affiliation(s)
- Lara Marques
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Bárbara Costa
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Mariana Pereira
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- ICBAS—School of Medicine and Biomedical Sciences, University of Porto, Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto, Portugal
| | - Abigail Silva
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Biomedicine, Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Joana Santos
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Leonor Saldanha
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Isabel Silva
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
| | - Paulo Magalhães
- Coimbra Institute for Biomedical Imaging and Translational Research, Edifício do ICNAS, Polo 3 Azinhaga de Santa Comba, 3000-548 Coimbra, Portugal;
| | - Stephan Schmidt
- Center for Pharmacometrics and Systems Pharmacology, Department of Pharmaceutics, College of Pharmacy, University of Florida, 6550 Sanger Road, Office 465, Orlando, FL 328227-7400, USA;
| | - Nuno Vale
- PerMed Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal; (L.M.); (B.C.); (M.P.); (A.S.); (J.S.); (L.S.); (I.S.)
- CINTESIS@RISE, Faculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal
- Department of Community Medicine, Health Information and Decision (MEDCIDS), Faculty of Medicine, University of Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
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Ponsiglione AM, Zaffino P, Ricciardi C, Di Laura D, Spadea MF, De Tommasi G, Improta G, Romano M, Amato F. Combining simulation models and machine learning in healthcare management: strategies and applications. PROGRESS IN BIOMEDICAL ENGINEERING (BRISTOL, ENGLAND) 2024; 6:022001. [PMID: 39655860 DOI: 10.1088/2516-1091/ad225a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Accepted: 01/24/2024] [Indexed: 12/18/2024]
Abstract
Simulation models and artificial intelligence (AI) are largely used to address healthcare and biomedical engineering problems. Both approaches showed promising results in the analysis and optimization of healthcare processes. Therefore, the combination of simulation models and AI could provide a strategy to further boost the quality of health services. In this work, a systematic review of studies applying a hybrid simulation models and AI approach to address healthcare management challenges was carried out. Scopus, Web of Science, and PubMed databases were screened by independent reviewers. The main strategies to combine simulation and AI as well as the major healthcare application scenarios were identified and discussed. Moreover, tools and algorithms to implement the proposed approaches were described. Results showed that machine learning appears to be the most employed AI strategy in combination with simulation models, which mainly rely on agent-based and discrete-event systems. The scarcity and heterogeneity of the included studies suggested that a standardized framework to implement hybrid machine learning-simulation approaches in healthcare management is yet to be defined. Future efforts should aim to use these approaches to design novel intelligentin-silicomodels of healthcare processes and to provide effective translation to the clinics.
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Affiliation(s)
- Alfonso Maria Ponsiglione
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
| | - Paolo Zaffino
- Department of Clinical and Experimental Medicine, University 'Magna Graecia' of Catanzaro, Catanzaro 88100, Italy
| | - Carlo Ricciardi
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
| | - Danilo Di Laura
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
| | - Maria Francesca Spadea
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe D-76131, Germany
| | - Gianmaria De Tommasi
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
| | - Giovanni Improta
- Department of Public Health, University of Naples 'Federico II', Naples 80131, Italy
| | - Maria Romano
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
| | - Francesco Amato
- Department of Electrical Engineering and Information Technology, University of Naples 'Federico II', Naples 80125, Italy
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Gurmessa DK, Jimma W. Explainable machine learning for breast cancer diagnosis from mammography and ultrasound images: a systematic review. BMJ Health Care Inform 2024; 31:e100954. [PMID: 38307616 PMCID: PMC10840064 DOI: 10.1136/bmjhci-2023-100954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 01/21/2024] [Indexed: 02/04/2024] Open
Abstract
BACKGROUND Breast cancer is the most common disease in women. Recently, explainable artificial intelligence (XAI) approaches have been dedicated to investigate breast cancer. An overwhelming study has been done on XAI for breast cancer. Therefore, this study aims to review an XAI for breast cancer diagnosis from mammography and ultrasound (US) images. We investigated how XAI methods for breast cancer diagnosis have been evaluated, the existing ethical challenges, research gaps, the XAI used and the relation between the accuracy and explainability of algorithms. METHODS In this work, Preferred Reporting Items for Systematic Reviews and Meta-Analyses checklist and diagram were used. Peer-reviewed articles and conference proceedings from PubMed, IEEE Explore, ScienceDirect, Scopus and Google Scholar databases were searched. There is no stated date limit to filter the papers. The papers were searched on 19 September 2023, using various combinations of the search terms 'breast cancer', 'explainable', 'interpretable', 'machine learning', 'artificial intelligence' and 'XAI'. Rayyan online platform detected duplicates, inclusion and exclusion of papers. RESULTS This study identified 14 primary studies employing XAI for breast cancer diagnosis from mammography and US images. Out of the selected 14 studies, only 1 research evaluated humans' confidence in using the XAI system-additionally, 92.86% of identified papers identified dataset and dataset-related issues as research gaps and future direction. The result showed that further research and evaluation are needed to determine the most effective XAI method for breast cancer. CONCLUSION XAI is not conceded to increase users' and doctors' trust in the system. For the real-world application, effective and systematic evaluation of its trustworthiness in this scenario is lacking. PROSPERO REGISTRATION NUMBER CRD42023458665.
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Affiliation(s)
- Daraje Kaba Gurmessa
- Department of Information Science, Jimma Institute of Technology, Jimma University, Jimma, Oromia, Ethiopia
- Computer Science, Mattu University, Mattu, Oromīya, Ethiopia
| | - Worku Jimma
- Department of Information Science, Jimma Institute of Technology, Jimma University, Jimma, Oromia, Ethiopia
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Lakhan A, Hamouda H, Abdulkareem KH, Alyahya S, Mohammed MA. Digital healthcare framework for patients with disabilities based on deep federated learning schemes. Comput Biol Med 2024; 169:107845. [PMID: 38118307 DOI: 10.1016/j.compbiomed.2023.107845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/21/2023] [Accepted: 12/11/2023] [Indexed: 12/22/2023]
Abstract
Utilizing digital healthcare services for patients who use wheelchairs is a vital and effective means to enhance their healthcare. Digital healthcare integrates various healthcare facilities, including local laboratories and centralized hospitals, to provide healthcare services for individuals in wheelchairs. In digital healthcare, the Internet of Medical Things (IoMT) allows local wheelchairs to connect with remote digital healthcare services and generate sensors from wheelchairs to monitor and process healthcare. Recently, it has been observed that wheelchair patients, when older than thirty, suffer from high blood pressure, heart disease, body glucose, and others due to less activity because of their disabilities. However, existing wheelchair IoMT applications are straightforward and do not consider the healthcare of wheelchair patients with their diseases during their disabilities. This paper presents a novel digital healthcare framework for patients with disabilities based on deep-federated learning schemes. In the proposed framework, we offer the federated learning deep convolutional neural network schemes (FL-DCNNS) that consist of different sub-schemes. The offloading scheme collects the sensors from integrated wheelchair bio-sensors as smartwatches such as blood pressure, heartbeat, body glucose, and oxygen. The smartwatches worked with wearable devices for disabled patients in our framework. We present the federated learning-enabled laboratories for data training and share the updated weights with the data security to the centralized node for decision and prediction. We present the decision forest for centralized healthcare nodes to decide on aggregation with the different constraints: cost, energy, time, and accuracy. We implemented a deep CNN scheme in each laboratory to train and validate the model locally on the node with the consideration of resources. Simulation results show that FL-DCNNS obtained the optimal results on the sensor data and minimized the energy by 25%, time 19%, cost 28%, and improved the accuracy of disease prediction by 99% as compared to existing digital healthcare schemes for wheelchair patients.
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Affiliation(s)
- Abdullah Lakhan
- Department of Cybersecurity and Computer Science, Dawood University of Engineering and Technology, Karachi City 74800, Sindh, Pakistan.
| | - Hassen Hamouda
- Department of Business Administration, College of Science and Humanities at Alghat, Majmaah University, Al-Majmaah 11952, Saudi Arabia.
| | - Karrar Hameed Abdulkareem
- College of Agriculture, Al-Muthanna University, Samawah 66001, Iraq; College of Engineering, University of Warith Al-Anbiyaa, Karbala 56001, Iraq.
| | - Saleh Alyahya
- Department of Electrical Engineering, College of Engineering and Information Technology, Onaizah Colleges, Onaizah 2053, Saudi Arabia.
| | - Mazin Abed Mohammed
- Department of Artificial Intelligence, College of Computer Science and Information Technology, University of Anbar, Anbar 31001, Iraq.
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Iskrov G, Raycheva R, Kostadinov K, Gillner S, Blankart CR, Gross ES, Gumus G, Mitova E, Stefanov S, Stefanov G, Stefanov R. Are the European reference networks for rare diseases ready to embrace machine learning? A mixed-methods study. Orphanet J Rare Dis 2024; 19:25. [PMID: 38273306 PMCID: PMC10809751 DOI: 10.1186/s13023-024-03047-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 01/19/2024] [Indexed: 01/27/2024] Open
Abstract
BACKGROUND The delay in diagnosis for rare disease (RD) patients is often longer than for patients with common diseases. Machine learning (ML) technologies have the potential to speed up and increase the precision of diagnosis in this population group. We aim to explore the expectations and experiences of the members of the European Reference Networks (ERNs) for RDs with those technologies and their potential for application. METHODS We used a mixed-methods approach with an online survey followed by a focus group discussion. Our study targeted primarily medical professionals but also other individuals affiliated with any of the 24 ERNs. RESULTS The online survey yielded 423 responses from ERN members. Participants reported a limited degree of knowledge of and experience with ML technologies. They considered improved diagnostic accuracy the most important potential benefit, closely followed by the synthesis of clinical information, and indicated the lack of training in these new technologies, which hinders adoption and implementation in routine care. Most respondents supported the option that ML should be an optional but recommended part of the diagnostic process for RDs. Most ERN members saw the use of ML limited to specialised units only in the next 5 years, where those technologies should be funded by public sources. Focus group discussions concluded that the potential of ML technologies is substantial and confirmed that the technologies will have an important impact on healthcare and RDs in particular. As ML technologies are not the core competency of health care professionals, participants deemed a close collaboration with developers necessary to ensure that results are valid and reliable. However, based on our results, we call for more research to understand other stakeholders' opinions and expectations, including the views of patient organisations. CONCLUSIONS We found enthusiasm to implement and apply ML technologies, especially diagnostic tools in the field of RDs, despite the perceived lack of experience. Early dialogue and collaboration between health care professionals, developers, industry, policymakers, and patient associations seem to be crucial to building trust, improving performance, and ultimately increasing the willingness to accept diagnostics based on ML technologies.
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Affiliation(s)
- Georgi Iskrov
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria.
- Department of Social Medicine and Public Health, Faculty of Public Health, Medical University of Plovdiv, 15A Vasil Aprilov Blvd., 4002, Plovdiv, Bulgaria.
| | - Ralitsa Raycheva
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
- Department of Social Medicine and Public Health, Faculty of Public Health, Medical University of Plovdiv, 15A Vasil Aprilov Blvd., 4002, Plovdiv, Bulgaria
| | - Kostadin Kostadinov
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
- Department of Social Medicine and Public Health, Faculty of Public Health, Medical University of Plovdiv, 15A Vasil Aprilov Blvd., 4002, Plovdiv, Bulgaria
| | - Sandra Gillner
- KPM Center for Public Management, University of Bern, Freiburgstr. 3, 3010, Bern, Switzerland
- Swiss Institute for Translational and Entrepreneurial Medicine (Sitem-Insel), Freiburgstr. 3, 3010, Bern, Switzerland
| | - Carl Rudolf Blankart
- KPM Center for Public Management, University of Bern, Freiburgstr. 3, 3010, Bern, Switzerland
- Swiss Institute for Translational and Entrepreneurial Medicine (Sitem-Insel), Freiburgstr. 3, 3010, Bern, Switzerland
| | - Edith Sky Gross
- EURORDIS - Rare Diseases Europe, 96 Rue Didot, 75014, Paris, France
| | - Gulcin Gumus
- EURORDIS - Rare Diseases Europe, 96 Rue Didot, 75014, Paris, France
| | - Elena Mitova
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
| | - Stefan Stefanov
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
- Department of Epidemiology and Disaster Medicine, Faculty of Public Health, Medical University, 15A Vasil Aprilov Blvd., 4002, Plovdiv, Bulgaria
| | - Georgi Stefanov
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
| | - Rumen Stefanov
- Institute for Rare Diseases, 22 Maestro G. Atanasov St., 4017, Plovdiv, Bulgaria
- Department of Social Medicine and Public Health, Faculty of Public Health, Medical University of Plovdiv, 15A Vasil Aprilov Blvd., 4002, Plovdiv, Bulgaria
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Khoo LS, Lim MK, Chong CY, McNaney R. Machine Learning for Multimodal Mental Health Detection: A Systematic Review of Passive Sensing Approaches. SENSORS (BASEL, SWITZERLAND) 2024; 24:348. [PMID: 38257440 PMCID: PMC10820860 DOI: 10.3390/s24020348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 12/14/2023] [Accepted: 12/18/2023] [Indexed: 01/24/2024]
Abstract
As mental health (MH) disorders become increasingly prevalent, their multifaceted symptoms and comorbidities with other conditions introduce complexity to diagnosis, posing a risk of underdiagnosis. While machine learning (ML) has been explored to mitigate these challenges, we hypothesized that multiple data modalities support more comprehensive detection and that non-intrusive collection approaches better capture natural behaviors. To understand the current trends, we systematically reviewed 184 studies to assess feature extraction, feature fusion, and ML methodologies applied to detect MH disorders from passively sensed multimodal data, including audio and video recordings, social media, smartphones, and wearable devices. Our findings revealed varying correlations of modality-specific features in individualized contexts, potentially influenced by demographics and personalities. We also observed the growing adoption of neural network architectures for model-level fusion and as ML algorithms, which have demonstrated promising efficacy in handling high-dimensional features while modeling within and cross-modality relationships. This work provides future researchers with a clear taxonomy of methodological approaches to multimodal detection of MH disorders to inspire future methodological advancements. The comprehensive analysis also guides and supports future researchers in making informed decisions to select an optimal data source that aligns with specific use cases based on the MH disorder of interest.
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Affiliation(s)
- Lin Sze Khoo
- Department of Human-Centered Computing, Faculty of Information Technology, Monash University, Clayton, VIC 3800, Australia;
| | - Mei Kuan Lim
- School of Information Technology, Monash University Malaysia, Subang Jaya 46150, Malaysia; (M.K.L.); (C.Y.C.)
| | - Chun Yong Chong
- School of Information Technology, Monash University Malaysia, Subang Jaya 46150, Malaysia; (M.K.L.); (C.Y.C.)
| | - Roisin McNaney
- Department of Human-Centered Computing, Faculty of Information Technology, Monash University, Clayton, VIC 3800, Australia;
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Rahman A, Debnath T, Kundu D, Khan MSI, Aishi AA, Sazzad S, Sayduzzaman M, Band SS. Machine learning and deep learning-based approach in smart healthcare: Recent advances, applications, challenges and opportunities. AIMS Public Health 2024; 11:58-109. [PMID: 38617415 PMCID: PMC11007421 DOI: 10.3934/publichealth.2024004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 12/18/2023] [Indexed: 04/16/2024] Open
Abstract
In recent years, machine learning (ML) and deep learning (DL) have been the leading approaches to solving various challenges, such as disease predictions, drug discovery, medical image analysis, etc., in intelligent healthcare applications. Further, given the current progress in the fields of ML and DL, there exists the promising potential for both to provide support in the realm of healthcare. This study offered an exhaustive survey on ML and DL for the healthcare system, concentrating on vital state of the art features, integration benefits, applications, prospects and future guidelines. To conduct the research, we found the most prominent journal and conference databases using distinct keywords to discover scholarly consequences. First, we furnished the most current along with cutting-edge progress in ML-DL-based analysis in smart healthcare in a compendious manner. Next, we integrated the advancement of various services for ML and DL, including ML-healthcare, DL-healthcare, and ML-DL-healthcare. We then offered ML and DL-based applications in the healthcare industry. Eventually, we emphasized the research disputes and recommendations for further studies based on our observations.
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Affiliation(s)
- Anichur Rahman
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Tanoy Debnath
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
- Department of CSE, Green University of Bangladesh, 220/D, Begum Rokeya Sarani, Dhaka -1207, Bangladesh
| | - Dipanjali Kundu
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Md. Saikat Islam Khan
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Airin Afroj Aishi
- Department of Computing and Information System, Daffodil International University, Savar, Dhaka, Bangladesh
| | - Sadia Sazzad
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Mohammad Sayduzzaman
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Shahab S. Band
- Department of Information Management, International Graduate School of Artificial Intelligence, National Yunlin University of Science and Technology, Taiwan
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Matulionyte R, Suero Molina E, Di Ieva A. Neurosurgery, Explainable AI, and Legal Liability. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1462:543-553. [PMID: 39523289 DOI: 10.1007/978-3-031-64892-2_34] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
One of the challenges of AI technologies is its "black box" nature, or the lack of explainability and interpretability of these technologies. This chapter explores whether AI systems in healthcare generally, and in neurosurgery specifically, should be explainable, for what purposes, and whether the current XAI ("explainable AI") approaches and techniques are able to achieve these purposes. The chapter concludes that XAI techniques, at least currently, are not the only and not necessarily the best way to achieve trust in AI and ensure patient autonomy or improved clinical decision, and they are of limited significance in determining liability. Instead, we argue, we need more transparency around AI systems, their training and validation, as this information is likely to better achieve these goals.
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Affiliation(s)
- Rita Matulionyte
- Macquarie Law School, Macquarie University, Sydney, NSW, Australia.
| | - Eric Suero Molina
- Computational NeuroSurgery (CNS) Lab, Macquarie Medical School, Faculty of Medicine, Human and Health Sciences, Macquarie University, Sydney, NSW, Australia
- Department of Neurosurgery, University Hospital of Münster, Münster, Germany
| | - Antonio Di Ieva
- Computational NeuroSurgery (CNS) Lab, Macquarie Medical School, Faculty of Medicine, Human and Health Sciences, Macquarie University, Sydney, NSW, Australia
- Macquarie Neurosurgery & Spine, MQ Health, Macquarie University Hospital, Sydney, NSW, Australia
- Department of Neurosurgery, Nepean Blue Mountains Local Health District, Penrith, NSW, Australia
- Centre for Applied Artificial Intelligence, School of Computing, Macquarie University, Sydney, NSW, Australia
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Ieracitano C, Mahmud M, Doborjeh M, Lay-Ekuakille A. Editorial Topical Collection: "Explainable and Augmented Machine Learning for Biosignals and Biomedical Images". SENSORS (BASEL, SWITZERLAND) 2023; 23:9722. [PMID: 38139568 PMCID: PMC10747000 DOI: 10.3390/s23249722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 11/28/2023] [Indexed: 12/24/2023]
Abstract
Machine learning (ML) is a well-known subfield of artificial intelligence (AI) that aims at developing algorithms and statistical models able to empower computer systems to automatically adapt to a specific task through experience or learning from data [...].
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Affiliation(s)
- Cosimo Ieracitano
- DICEAM Department, University Mediterranea of Reggio Calabria, Via Zehender, Feo di Vito, 89122 Reggio Calabria, Italy
| | - Mufti Mahmud
- Department of Computer Science, Nottingham Trent University, Nottingham NG11 8NS, UK;
- Computing and Informatics Research Centre, Nottingham Trent University, Nottingham NG11 8NS, UK
- Medical Technologies Innovation Facility, Nottingham Trent University, Nottingham NG11 8NS, UK
| | - Maryam Doborjeh
- Computer Science and Software Engineering, Auckland University of Technology, Auckland 1010, New Zealand;
| | - Aimé Lay-Ekuakille
- Department of Innovation Engineering, University of Salento, 73100 Lecce, Italy;
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50
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Budiarto A, Tsang KCH, Wilson AM, Sheikh A, Shah SA. Machine Learning-Based Asthma Attack Prediction Models From Routinely Collected Electronic Health Records: Systematic Scoping Review. JMIR AI 2023; 2:e46717. [PMID: 38875586 PMCID: PMC11041490 DOI: 10.2196/46717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 09/28/2023] [Accepted: 10/09/2023] [Indexed: 06/16/2024]
Abstract
BACKGROUND An early warning tool to predict attacks could enhance asthma management and reduce the likelihood of serious consequences. Electronic health records (EHRs) providing access to historical data about patients with asthma coupled with machine learning (ML) provide an opportunity to develop such a tool. Several studies have developed ML-based tools to predict asthma attacks. OBJECTIVE This study aims to critically evaluate ML-based models derived using EHRs for the prediction of asthma attacks. METHODS We systematically searched PubMed and Scopus (the search period was between January 1, 2012, and January 31, 2023) for papers meeting the following inclusion criteria: (1) used EHR data as the main data source, (2) used asthma attack as the outcome, and (3) compared ML-based prediction models' performance. We excluded non-English papers and nonresearch papers, such as commentary and systematic review papers. In addition, we also excluded papers that did not provide any details about the respective ML approach and its result, including protocol papers. The selected studies were then summarized across multiple dimensions including data preprocessing methods, ML algorithms, model validation, model explainability, and model implementation. RESULTS Overall, 17 papers were included at the end of the selection process. There was considerable heterogeneity in how asthma attacks were defined. Of the 17 studies, 8 (47%) studies used routinely collected data both from primary care and secondary care practices together. Extreme imbalanced data was a notable issue in most studies (13/17, 76%), but only 38% (5/13) of them explicitly dealt with it in their data preprocessing pipeline. The gradient boosting-based method was the best ML method in 59% (10/17) of the studies. Of the 17 studies, 14 (82%) studies used a model explanation method to identify the most important predictors. None of the studies followed the standard reporting guidelines, and none were prospectively validated. CONCLUSIONS Our review indicates that this research field is still underdeveloped, given the limited body of evidence, heterogeneity of methods, lack of external validation, and suboptimally reported models. We highlighted several technical challenges (class imbalance, external validation, model explanation, and adherence to reporting guidelines to aid reproducibility) that need to be addressed to make progress toward clinical adoption.
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Affiliation(s)
- Arif Budiarto
- Asthma UK Center for Applied Research, Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
- Bioinformatics and Data Science Research Center, Bina Nusantara University, Jakarta, Indonesia
| | - Kevin C H Tsang
- Asthma UK Center for Applied Research, Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Andrew M Wilson
- Norwich Medical School, University of East Anglia, Norwich, United Kingdom
- Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, United Kingdom
| | - Aziz Sheikh
- Asthma UK Center for Applied Research, Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
| | - Syed Ahmar Shah
- Asthma UK Center for Applied Research, Usher Institute, University of Edinburgh, Edinburgh, United Kingdom
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