1
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Hu Y, Tian Y, Zou C, Moon TS. The current progress of tandem chemical and biological plastic upcycling. Biotechnol Adv 2024:108462. [PMID: 39395608 DOI: 10.1016/j.biotechadv.2024.108462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 08/31/2024] [Accepted: 10/03/2024] [Indexed: 10/14/2024]
Abstract
Each year, millions of tons of plastics are produced for use in such applications as packaging, construction, and textiles. While plastic is undeniably useful and convenient, its environmental fate and transport have raised growing concerns about waste and pollution. However, the ease and low cost of producing virgin plastic have so far made conventional plastic recycling economically unattractive. Common contaminants in plastic waste and shortcomings of the recycling processes themselves typically mean that recycled plastic products are of relatively low quality in some cases. The high cost and high energy requirements of typical recycling operations also reduce their economic benefits. In recent years, the bio-upcycling of chemically treated plastic waste has emerged as a promising alternative to conventional plastic recycling. Unlike recycling, bio-upcycling uses relatively mild process conditions to economically transform pretreated plastic waste into value-added products. In this review, we first provide a précis of the general methodology and limits of conventional plastic recycling. Then, we review recent advances in hybrid chemical/biological upcycling methods for different plastics, including polyethylene terephthalate, polyurethane, polyamide, polycarbonate, polyethylene, polypropylene, polystyrene, and polyvinyl chloride. For each kind of plastic, we summarize both the pretreatment methods for making the plastic bio-available and the microbial chassis for degrading or converting the treated plastic waste to value-added products. We also discuss both the limitations of upcycling processes for major plastics and their potential for bio-upcycling.
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Affiliation(s)
- Yifeng Hu
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO, United States
| | - Yuxin Tian
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO, United States
| | - Chenghao Zou
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO, United States
| | - Tae Seok Moon
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO, United States; Division of Biology and Biomedical Sciences, Washington University in St. Louis, St. Louis, MO, United States; Synthetic Biology Group, J. Craig Venter Institute, La Jolla, CA, United States.
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2
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Lu Q, Tang D, Liang Q, Wang S. Biotechnology for the Degradation and Upcycling of Traditional Plastics. ENVIRONMENTAL RESEARCH 2024; 263:120140. [PMID: 39395553 DOI: 10.1016/j.envres.2024.120140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 10/09/2024] [Accepted: 10/10/2024] [Indexed: 10/14/2024]
Abstract
Traditional plastics, predominantly derived from petrochemicals, are extensively utilized in modern industry and daily life. However, inadequate management and disposal practices have resulted in widespread environmental contamination, with polyethylene, polypropylene, polyvinyl chloride, polyethylene terephthalate, and polystyrene being the most prevalent pollutants. Biological methods for plastic degradation have garnered significant attention due to their cost-effectiveness and potential for resource recovery, positioning them as promising strategies for sustainable plastic waste management. While polyethylene terephthalate, characterized by its relatively less stable C-O bonds, has been extensively studied and demonstrates significant potential for biodegradation. In contrast, the biodegradation of other plastics remains a significant challenge due to the inherent stability of their C-C backbone structures. This review comprehensively examines the state-of-the-art biotechnology for treating these traditional plastics, focusing on: (1) the roles of specific microorganisms and enzymes, their taxonomic classifications, and the metabolic pathways involved in plastic biodegradation; and (2) a proposed two-stage hybrid approach integrating physicochemical and biological processes to enhance the biodegradation or upcycling of these traditional plastics. Additionally, the review highlights the critical role of multi-omics approaches and tailored strategies in enhancing the efficiency of plastic biodegradation while examining the impact of plastic molecular structures and additives on their degradation potential. It also addresses key challenges and delineates future research directions to foster the development of innovative biological methods for the effective and sustainable management of plastic waste.
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Affiliation(s)
- Qihong Lu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, China 510006.
| | - Daoyu Tang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, China 510006
| | - Qi Liang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, China 510006
| | - Shanquan Wang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, China 510006.
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3
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García-Depraect O, Martínez-Mendoza LJ, Aragão Börner R, Zimmer J, Muñoz R. Biomethanization of rigid packaging made entirely of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate): Mono- and co-digestion tests and microbial insights. BIORESOURCE TECHNOLOGY 2024; 408:131180. [PMID: 39098356 DOI: 10.1016/j.biortech.2024.131180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 07/25/2024] [Accepted: 07/29/2024] [Indexed: 08/06/2024]
Abstract
This study evaluates the anaerobic mesophilic mono- and co-digestion of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBH) plastic bottles as a proxy for rigid packaging materials. Initial tests showed a 97.3 ± 0.2 % reduction in weight and an observable alteration in the surface (thinning, color fading and pitting) of the PHBH bottles after eight weeks. Subsequent tests showed that PHBH squares (3 × 3 cm) produced 400 NmL-CH4/g-VSfed, at a slower rate compared to powdered PHBH but with similar methane yield. Co-digestion experiments with food waste, swine manure, or sewage sludge showed successful digestion of PHBH alongside organic waste (even at a high bioplastic loading of 20 % volatile solids basis), with methane production comparable to or slightly higher than that observed in mono-digestion. Molecular analyses suggested that the type of co-substrate influenced microbial activity and that methane production was mainly driven by hydrogenotrophic methanogenesis. These results suggest the potential for integrating rigid PHBH packaging into anaerobic digesters.
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Affiliation(s)
- Octavio García-Depraect
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Leonardo J Martínez-Mendoza
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Rosa Aragão Börner
- Nestlé Research, Société des Produits Nestlé S.A., Route du Jorat 57, 1000 Lausanne, Switzerland
| | - Johannes Zimmer
- Nestlé Research, Société des Produits Nestlé S.A., Route du Jorat 57, 1000 Lausanne, Switzerland
| | - Raúl Muñoz
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain.
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4
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Pham VHT, Kim J, Chang S. A Valuable Source of Promising Extremophiles in Microbial Plastic Degradation. Polymers (Basel) 2024; 16:2109. [PMID: 39125136 PMCID: PMC11314448 DOI: 10.3390/polym16152109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 07/01/2024] [Accepted: 07/22/2024] [Indexed: 08/12/2024] Open
Abstract
Plastics have accumulated in open environments, such as oceans, rivers, and land, for centuries, but their effect has been of concern for only decades. Plastic pollution is a global challenge at the forefront of public awareness worldwide due to its negative effects on ecological systems, animals, human health, and national economies. Therefore, interest has increased regarding specific circular economies for the development of plastic production and the investigation of green technologies for plastic degradation after use on an appropriate timescale. Moreover, biodegradable plastics have been found to contain potential new hazards compared with conventional plastics due to the physicochemical properties of the polymers involved. Recently, plastic biodegradation was defined as microbial conversion using functional microorganisms and their enzymatic systems. This is a promising strategy for depolymerizing organic components into carbon dioxide, methane, water, new biomass, and other higher value bioproducts under both oxic and anoxic conditions. This study reviews microplastic pollution, the negative consequences of plastic use, and the current technologies used for plastic degradation and biodegradation mediated by microorganisms with their drawbacks; in particular, the important and questionable role of extremophilic multi-enzyme-producing bacteria in synergistic systems of plastic decomposition is discussed. This study emphasizes the key points for enhancing the plastic degradation process using extremophiles, such as cell hydrophobicity, amyloid protein, and other relevant factors. Bioprospecting for novel mechanisms with unknown information about the bioproducts produced during the plastic degradation process is also mentioned in this review with the significant goals of CO2 evolution and increasing H2/CH4 production in the future. Based on the potential factors that were analyzed, there may be new ideas for in vitro isolation techniques for unculturable/multiple-enzyme-producing bacteria and extremophiles from various polluted environments.
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Affiliation(s)
- Van Hong Thi Pham
- Department of Environmental Energy Engineering, College of Creative Engineering, Kyonggi University, Suwon 16227, Republic of Korea;
- Department of Life Science, College of Natural Science, Kyonggi University, Suwon 16227, Republic of Korea
| | - Jaisoo Kim
- Department of Life Science, College of Natural Science, Kyonggi University, Suwon 16227, Republic of Korea
| | - Soonwoong Chang
- Department of Environmental Energy Engineering, College of Creative Engineering, Kyonggi University, Suwon 16227, Republic of Korea;
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5
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Schneier A, Melaugh G, Sadler JC. Engineered plastic-associated bacteria for biodegradation and bioremediation. BIOTECHNOLOGY FOR THE ENVIRONMENT 2024; 1:7. [PMID: 39026535 PMCID: PMC11256910 DOI: 10.1186/s44314-024-00007-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 04/29/2024] [Indexed: 07/20/2024]
Abstract
The global plastic waste crisis has triggered the development of novel methods for removal of recalcitrant polymers from the environment. Biotechnological approaches have received particular attention due to their potential for enabling sustainable, low-intensity bioprocesses which could also be interfaced with microbial upcycling pathways to support the emerging circular bioeconomy. However, low biodegradation efficiency of solid plastic materials remains a bottleneck, especially at mesophilic conditions required for one-pot degradation and upcycling. A promising strategy used in nature to address this is localisation of plastic-degrading microbes to the plastic surface via biofilm-mediated surface association. This review highlights progress and opportunities in leveraging these naturally occurring mechanisms of biofilm formation and other cell-surface adhesion biotechnologies to co-localise engineered cells to plastic surfaces. We further discuss examples of combining these approaches with extracellular expression of plastic-degrading enzymes to accelerate plastic degradation. Additionally, we review this topic in the context of nano- and microplastics bioremediation and their removal from wastewater and finally propose future research directions for this nascent field.
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Affiliation(s)
- Arianna Schneier
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum Brown Road, King’s Buildings, Edinburgh, EH9 3FF UK
| | - Gavin Melaugh
- School of Physics and Astronomy, University of Edinburgh, Edinburgh, EH9 3FD UK
- School of Engineering, University of Edinburgh, Edinburgh, EH9 3JL UK
| | - Joanna C. Sadler
- Institute of Quantitative Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum Brown Road, King’s Buildings, Edinburgh, EH9 3FF UK
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6
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Yang J, Li Z, Xu Q, Liu W, Gao S, Qin P, Chen Z, Wang A. Towards carbon neutrality: Sustainable recycling and upcycling strategies and mechanisms for polyethylene terephthalate via biotic/abiotic pathways. ECO-ENVIRONMENT & HEALTH 2024; 3:117-130. [PMID: 38638172 PMCID: PMC11021832 DOI: 10.1016/j.eehl.2024.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 01/09/2024] [Accepted: 01/25/2024] [Indexed: 04/20/2024]
Abstract
Polyethylene terephthalate (PET), one of the most ubiquitous engineering plastics, presents both environmental challenges and opportunities for carbon neutrality and a circular economy. This review comprehensively addressed the latest developments in biotic and abiotic approaches for PET recycling/upcycling. Biotically, microbial depolymerization of PET, along with the biosynthesis of reclaimed monomers [terephthalic acid (TPA), ethylene glycol (EG)] to value-added products, presents an alternative for managing PET waste and enables CO2 reduction. Abiotically, thermal treatments (i.e., hydrolysis, glycolysis, methanolysis, etc.) and photo/electrocatalysis, enabled by catalysis advances, can depolymerize or convert PET/PET monomers in a more flexible, simple, fast, and controllable manner. Tandem abiotic/biotic catalysis offers great potential for PET upcycling to generate commodity chemicals and alternative materials, ideally at lower energy inputs, greenhouse gas emissions, and costs, compared to virgin polymer fabrication. Remarkably, over 25 types of upgraded PET products (e.g., adipic acid, muconic acid, catechol, vanillin, and glycolic acid, etc.) have been identified, underscoring the potential of PET upcycling in diverse applications. Efforts can be made to develop chemo-catalytic depolymerization of PET, improve microbial depolymerization of PET (e.g., hydrolysis efficiency, enzymatic activity, thermal and pH level stability, etc.), as well as identify new microorganisms or hydrolases capable of degrading PET through computational and machine learning algorithms. Consequently, this review provides a roadmap for advancing PET recycling and upcycling technologies, which hold the potential to shape the future of PET waste management and contribute to the preservation of our ecosystems.
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Affiliation(s)
- Jiaqi Yang
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
| | - Zhiling Li
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Qiongying Xu
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
| | - Wenzong Liu
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
| | - Shuhong Gao
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
| | - Peiwu Qin
- Institute of Biopharmaceutical and Health Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Tsinghua-Berkeley Shenzhen Institute, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Zhenglin Chen
- Institute of Biopharmaceutical and Health Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Tsinghua-Berkeley Shenzhen Institute, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Aijie Wang
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
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7
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Armijo-Galdames B, Sadler JC. One-Pot Biosynthesis of Acetone from Waste Poly(hydroxybutyrate). ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2024; 12:7748-7756. [PMID: 38783840 PMCID: PMC11110063 DOI: 10.1021/acssuschemeng.4c00357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 04/19/2024] [Accepted: 04/22/2024] [Indexed: 05/25/2024]
Abstract
The plastic waste crisis is catalyzing change across the plastics life cycle. Central to this is increased production and application of bioplastics and biodegradable plastics. In particular, poly(hydroxybutyrate) (PHB) is a biodegradable bioplastic that can be produced from various renewable and waste feedstocks and is a promising alternative to some petrochemical-derived and non-biodegradable plastics. Despite its advantages, PHB biodegradation depends on environmental conditions, and the effects of degradation into microplastics, oligomers, and the 3-hydroxybutyrate (3-HB) monomer on soil microbiomes are unknown. We hypothesized that the ease of PHB biodegradation renders this next-generation plastic an ideal feedstock for microbial recycling into platform chemicals currently produced from fossil fuels. To demonstrate this, we report the one-pot degradation and recycling of PHB into acetone using a single strain of engineered Escherichia coli. Following strain development and initial bioprocess optimization, we report maximum titers of 123 mM acetone (7 g/L) from commercial PHB granules after 24 h fermentation at 30 °C. We further report biorecycling of an authentic sample of post-consumer PHB waste at a preparative scale. This is the first demonstration of biological recycling of PHB into a second-generation chemical, and it demonstrates next-generation plastic waste as a novel feedstock for the circular bioeconomy.
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Affiliation(s)
- Benjamín
O. Armijo-Galdames
- Institute of Quantitative
Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum
Brown Road, King’s Buildings, Edinburgh EH9 3FF, U.K.
| | - Joanna C. Sadler
- Institute of Quantitative
Biology, Biochemistry and Biotechnology, School of Biological Sciences, University of Edinburgh, Roger Land Building, Alexander Crum
Brown Road, King’s Buildings, Edinburgh EH9 3FF, U.K.
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8
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Gopal MR, Kunjapur AM. Harnessing biocatalysis to achieve selective functional group interconversion of monomers. Curr Opin Biotechnol 2024; 86:103093. [PMID: 38417202 DOI: 10.1016/j.copbio.2024.103093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 01/28/2024] [Accepted: 02/01/2024] [Indexed: 03/01/2024]
Abstract
Polymeric materials are ubiquitous to modern life. However, reliance of petroleum for polymeric building blocks is not sustainable. The synthesis of macromolecules from recalcitrant polymer waste feedstocks, such as plastic waste and lignocellulosic biomass, presents an opportunity to bypass the use of petroleum-based feedstocks. However, the deconstruction and transformation of these alternative feedstocks remained limited until recently. Herein, we highlight examples of monomers liberated from the deconstruction of recalcitrant polymers, and more extensively, we showcase the state-of-the-art in biocatalytic technologies that are enabling synthesis of diverse upcycled monomeric starting materials for a wide variety of macromolecules. Overall, this review emphasizes the importance of functional group interconversion as a promising strategy by which biocatalysis can aid the diversification and upcycling of monomers.
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Affiliation(s)
- Madan R Gopal
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE, USA; Center for Plastics Innovation, University of Delaware, Newark, DE, USA
| | - Aditya M Kunjapur
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, DE, USA; Center for Plastics Innovation, University of Delaware, Newark, DE, USA.
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9
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Haala F, Dielentheis-Frenken MRE, Brandt FM, Karmainski T, Blank LM, Tiso T. DoE-based medium optimization for improved biosurfactant production with Aureobasidium pullulans. Front Bioeng Biotechnol 2024; 12:1379707. [PMID: 38511129 PMCID: PMC10953688 DOI: 10.3389/fbioe.2024.1379707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 02/19/2024] [Indexed: 03/22/2024] Open
Abstract
Polyol lipids (a.k.a. liamocins) produced by the polyextremotolerant, yeast-like fungus Aureobasidium pullulans are amphiphilic molecules with high potential to serve as biosurfactants. So far, cultivations of A. pullulans have been performed in media with complex components, which complicates further process optimization due to their undefined composition. In this study, we developed and optimized a minimal medium, focusing on biosurfactant production. Firstly, we replaced yeast extract and peptone in the best-performing polyol lipid production medium to date with a vitamin solution, a trace-element solution, and a nitrogen source. We employed a design of experiments approach with a factor screening using a two-level-factorial design, followed by a central composite design. The polyol lipid titer was increased by 56% to 48 g L-1, and the space-time yield from 0.13 to 0.20 g L-1 h-1 in microtiter plate cultivations. This was followed by a successful transfer to a 1 L bioreactor, reaching a polyol lipid concentration of 41 g L-1. The final minimal medium allows the investigation of alternative carbon sources and the metabolic pathways involved, to pinpoint targets for genetic modifications. The results are discussed in the context of the industrial applicability of this robust and versatile fungus.
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Affiliation(s)
| | | | | | | | | | - Till Tiso
- Institute of Applied Microbiology, RWTH Aachen University, Aachen, Germany
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10
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Phan ANT, Prigolovkin L, Blank LM. Unlocking the potentials of Ustilago trichophora for up-cycling polyurethane-derived monomer 1,4-butanediol. Microb Biotechnol 2024; 17:e14384. [PMID: 38454531 PMCID: PMC10920939 DOI: 10.1111/1751-7915.14384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 11/13/2023] [Accepted: 11/23/2023] [Indexed: 03/09/2024] Open
Abstract
Plastic usage by microbes as a carbon source is a promising strategy to increase the recycling quota. 1,4-butanediol (BDO) is a common monomer derived from polyesters and polyurethanes. In this study, Ustilago trichophora was found to be an efficient cell-factory to valorize BDO. To investigate product formation by U. trichophora, we refined the traditional ion exclusion liquid chromatography method by examining eluent, eluent concentrations, oven temperatures, and organic modifiers to make the chromatography compatible with mass spectrometry. An LC-UV/RI-MS2 method is presented here to identify and quantify extracellular metabolites in the cell cultures. With this method, we successfully identified that U. trichophora secreted malic acid, succinic acid, erythritol, and mannitol into the culture medium. Adaptive laboratory evolution followed by medium optimization significantly improved U. trichophora growth on BDO and especially malic acid production. Overall, the carbon yield on the BDO substrate was approximately 33% malic acid. This study marks the first report of a Ustilaginaceae fungus capable of converting BDO into versatile chemical building blocks. Since U. trichophora is not genetically engineered, it is a promising microbial host to produce malic acid from BDO, thereby contributing to the development of the envisaged sustainable bioeconomy.
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Affiliation(s)
- An N. T. Phan
- Institute of Applied Microbiology (iAMB), Aachen Biology and Biotechnology (ABBt)RWTH Aachen UniversityAachenGermany
| | - Lisa Prigolovkin
- Institute of Applied Microbiology (iAMB), Aachen Biology and Biotechnology (ABBt)RWTH Aachen UniversityAachenGermany
| | - Lars M. Blank
- Institute of Applied Microbiology (iAMB), Aachen Biology and Biotechnology (ABBt)RWTH Aachen UniversityAachenGermany
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11
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Liu Y, Song X, Yang W, Wang M, Lian G, Li ZJ. Production of polyhydroxyalkanoates by engineered Halomonas bluephagenesis using starch as a carbon source. Int J Biol Macromol 2024; 261:129838. [PMID: 38307428 DOI: 10.1016/j.ijbiomac.2024.129838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Revised: 01/17/2024] [Accepted: 01/27/2024] [Indexed: 02/04/2024]
Abstract
A novel α-amylase Amy03713 was screened and cloned from the starch utilization strain Vibrio alginolyticus LHF01. When heterologously expressed in Escherichia coli, Amy03713 exhibited the highest enzyme activity at 45 °C and pH 7, maintained >50 % of the enzyme activity in the range of 25-75 °C and pH 5-9, and sustained >80 % of the enzyme activity in 25 % (w/v) of NaCl solution, thus showing a wide range of adapted temperatures, pH, and salt concentrations. Halomonas bluephagenesis harboring amy03713 gene was able to directly utilize starch. With optimized amylase expression, H. bluephagenesis could produce poly(3-hydroxybutyrate) (PHB), poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), and poly(3-hydroxybutyrate-co-4-hydroxybutyrate) (P34HB). When cultured for PHB production, recombinant H. bluephagenesis was able to grow up to a cell dry weight of 11.26 g/L, achieving a PHB titer of 6.32 g/L, which is the highest titer that has been reported for PHB production from starch in shake flasks. This study suggests that Amy03713 is an ideal amylase for PHA production using starch as the carbon source in H. bluephagenesis.
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Affiliation(s)
- Yuzhong Liu
- Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China
| | - Xueqi Song
- Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China
| | - Weinan Yang
- Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
| | - Mengru Wang
- Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China
| | - Guoli Lian
- Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China
| | - Zheng-Jun Li
- Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, People's Republic of China.
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12
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Okonkwo O, Dou C, Oksen E, Narani A, Marcondes W, Chen X, Kim J, Gao Y, Burnet MC, Webb-Robertson BJM, Poirier BC, Tanjore D, Magnuson JK, Munoz NM, Gardner J. Corn stover variability drives differences in bisabolene production by engineered Rhodotorula toruloides. J Ind Microbiol Biotechnol 2024; 51:kuae034. [PMID: 39317673 PMCID: PMC11467694 DOI: 10.1093/jimb/kuae034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 09/23/2024] [Indexed: 09/26/2024]
Abstract
Microbial conversion of lignocellulosic biomass represents an alternative route for production of biofuels and bioproducts. While researchers have mostly focused on engineering strains such as Rhodotorula toruloides for better bisabolene production as a sustainable aviation fuel, less is known about the impact of the feedstock heterogeneity on bisabolene production. Critical material attributes like feedstock composition, nutritional content, and inhibitory compounds can all influence bioconversion. Further, the given feedstocks can have a marked influence on selection of suitable pretreatment and hydrolysis technologies, optimizing the fermentation conditions, and possibly even modifying the microorganism's metabolic pathways, to better utilize the available feedstock. This work aimed to examine and understand how variations in corn stover batches, anatomical fractions, and storage conditions impact the efficiency of bisabolene production by R. toruloides. All of these represent different facets of feedstock heterogeneity. Deacetylation, mechanical refining, and enzymatic hydrolysis of these variable feedstocks served as the basis of this research. The resulting hydrolysates were converted to bisabolene via fermentation, a sustainable aviation fuel precursor, using an engineered R. toruloides strain. This study showed that different sources of feedstock heterogeneity can influence microbial growth and product titer in counterintuitive ways, as revealed through global analysis of protein expression. The maximum bisabolene produced by R. toruloides was on the stalk fraction of corn stover hydrolysate (8.89 ± 0.47 g/L). Further, proteomics analysis comparing the protein expression between the anatomic fractions showed that proteins relating to carbohydrate metabolism, energy production, and conversion as well as inorganic ion transport metabolism were either significantly upregulated or downregulated. Specifically, downregulation of proteins related to the iron-sulfur cluster in stalk fraction suggests a coordinated response by R. toruloides to maintain overall metabolic balance, and this was corroborated by the concentration of iron in the feedstocks. ONE-SENTENCE SUMMARY This study elucidates the effects of different sources of corn stover on bisabolene production by engineered Rhodotorula toruloides, highlighting the importance of understanding feedstock variability to enhance bioprocess efficiency and economic outcomes.
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Affiliation(s)
- Onyinye Okonkwo
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Chang Dou
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Ethan Oksen
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Akash Narani
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Wilian Marcondes
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Xiaowen Chen
- National Biology Center, National Renewable Energy Lab, 1617 Cole Blvd., Golden, CO 80401, USA
| | - Joonhoon Kim
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- US Department of Energy Joint BioEnergy Institute, Emeryville, CA 94608, USA
| | - Yuqian Gao
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Meagan C Burnet
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Bobbie-Jo M Webb-Robertson
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Brenton C Poirier
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Deepti Tanjore
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
| | - Jon K Magnuson
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- US Department of Energy Joint BioEnergy Institute, Emeryville, CA 94608, USA
| | - Nathalie Munoz Munoz
- US Department of Energy Agile BioFoundry, Emeryville, CA 94608, USA
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - James Gardner
- Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Lab, Berkeley, CA 94608, USA
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13
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Valenzuela-Ortega M, Suitor JT, White MFM, Hinchcliffe T, Wallace S. Microbial Upcycling of Waste PET to Adipic Acid. ACS CENTRAL SCIENCE 2023; 9:2057-2063. [PMID: 38033806 PMCID: PMC10683474 DOI: 10.1021/acscentsci.3c00414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Indexed: 12/02/2023]
Abstract
Microorganisms can be genetically engineered to transform abundant waste feedstocks into value-added small molecules that would otherwise be manufactured from diminishing fossil resources. Herein, we report the first one-pot bio-upcycling of PET plastic waste into the prolific platform petrochemical and nylon precursor adipic acid in the bacterium Escherichia coli. Optimizing heterologous gene expression and enzyme activity enabled increased flux through the de novo pathway, and immobilization of whole cells in alginate hydrogels increased the stability of the rate-limiting enoate reductase BcER. The pathway enzymes were also interfaced with hydrogen gas generated by engineered E. coli DD-2 in combination with a biocompatible Pd catalyst to enable adipic acid synthesis from metabolic cis,cis-muconic acid. Together, these optimizations resulted in a one-pot conversion to adipic acid from terephthalic acid, including terephthalate samples isolated from industrial PET waste and a post-consumer plastic bottle.
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Affiliation(s)
- Marcos Valenzuela-Ortega
- Institute
of Quantitative Biology, Biochemistry and Biotechnology, School of
Biological Sciences, University of Edinburgh, Alexander Crum Brown Road, King’s
Buildings, Edinburgh, EH9
3FF, U.K.
| | - Jack T. Suitor
- Institute
of Quantitative Biology, Biochemistry and Biotechnology, School of
Biological Sciences, University of Edinburgh, Alexander Crum Brown Road, King’s
Buildings, Edinburgh, EH9
3FF, U.K.
| | - Mirren F. M. White
- Institute
of Quantitative Biology, Biochemistry and Biotechnology, School of
Biological Sciences, University of Edinburgh, Alexander Crum Brown Road, King’s
Buildings, Edinburgh, EH9
3FF, U.K.
| | - Trevor Hinchcliffe
- Impact
Solutions Ltd., Impact Technology Centre, Fraser Road, Kirkton Campus, Livingston, EH54 7BU, U.K.
| | - Stephen Wallace
- Institute
of Quantitative Biology, Biochemistry and Biotechnology, School of
Biological Sciences, University of Edinburgh, Alexander Crum Brown Road, King’s
Buildings, Edinburgh, EH9
3FF, U.K.
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14
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Seyyedi SR, Kowsari E, Ramakrishna S, Gheibi M, Chinnappan A. Marine plastics, circular economy, and artificial intelligence: A comprehensive review of challenges, solutions, and policies. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 345:118591. [PMID: 37423188 DOI: 10.1016/j.jenvman.2023.118591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 06/09/2023] [Accepted: 07/03/2023] [Indexed: 07/11/2023]
Abstract
Global plastic production is rapidly increasing, resulting in significant amounts of plastic entering the marine environment. This makes marine litter one of the most critical environmental concerns. Determining the effects of this waste on marine animals, particularly endangered organisms, and the health of the oceans is now one of the top environmental priorities. This article reviews the sources of plastic production, its entry into the oceans and the food chain, the potential threat to aquatic animals and humans, the challenges of plastic waste in the oceans, the existing laws and regulations in this field, and strategies. Using conceptual models, this study looks at a circular economy framework for energy recovery from ocean plastic wastes. It does this by drawing on debates about AI-based systems for smart management. In the last sections of the present research, a novel soft sensor is designed for the prediction of accumulated ocean plastic waste based on social development features and the application of machine learning computations. Plus, the best scenario of ocean plastic waste management with a concentration on both energy consumption and greenhouse gas emissions is discussed using USEPA-WARM modeling. Finally, a circular economy concept and ocean plastic waste management policies are modeled based on the strategies of different countries. We deal with green chemistry and the replacement of plastics derived from fossil sources.
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Affiliation(s)
- Seyed Reza Seyyedi
- Department of Chemistry, Amirkabir University of Technology (Tehran Polytechnic), Hafez St., Tehran 15875-4413, Iran
| | - Elaheh Kowsari
- Department of Chemistry, Amirkabir University of Technology (Tehran Polytechnic), Hafez St., Tehran 15875-4413, Iran.
| | - Seeram Ramakrishna
- Department of Mechanical Engineering, Center for Nanofibers and Nanotechnology, National University of Singapore, 119260, Singapore.
| | - Mohammad Gheibi
- Department of Civil Engineering, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Amutha Chinnappan
- Department of Mechanical Engineering, Center for Nanofibers and Nanotechnology, National University of Singapore, 119260, Singapore
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15
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Putman LI, Schaerer LG, Wu R, Kulas DG, Zolghadr A, Ong RG, Shonnard DR, Techtmann SM. Deconstructed Plastic Substrate Preferences of Microbial Populations from the Natural Environment. Microbiol Spectr 2023; 11:e0036223. [PMID: 37260392 PMCID: PMC10433879 DOI: 10.1128/spectrum.00362-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 05/09/2023] [Indexed: 06/02/2023] Open
Abstract
Over half of the world's plastic waste is landfilled, where it is estimated to take hundreds of years to degrade. Given the continued use and disposal of plastic products, it is vital that we develop fast and effective ways to utilize plastic waste. Here, we explore the potential of tandem chemical and biological processing to process various plastics quickly and effectively. Four samples of compost or sediment were used to set up enrichment cultures grown on mixtures of compounds, including disodium terephthalate and terephthalic acid (monomers of polyethylene terephthalate), compounds derived from the chemical deconstruction of polycarbonate, and pyrolysis oil derived from high-density polyethylene plastics. Established enrichment communities were also grown on individual substrates to investigate the substrate preferences of different taxa. Biomass harvested from the cultures was characterized using 16S rRNA gene amplicon sequencing and shotgun metagenomic sequencing. These data reveal low-diversity microbial communities structured by differences in culture inoculum, culture substrate source plastic type, and time. Microbial populations from the classes Alphaproteobacteria, Gammaproteobacteria, Actinobacteria, and Acidobacteriae were significantly enriched when grown on substrates derived from high-density polyethylene and polycarbonate. The metagenomic data contain abundant aromatic and aliphatic hydrocarbon degradation genes relevant to the biodegradation of deconstructed plastic substrates used here. We show that microbial populations from diverse environments are capable of growth on substrates derived from the chemical deconstruction or pyrolysis of multiple plastic types and that paired chemical and biological processing of plastics should be further developed for industrial applications to manage plastic waste. IMPORTANCE The durability and impermeable nature of plastics have made them a popular material for numerous applications, but these same qualities make plastics difficult to dispose of, resulting in massive amounts of accumulated plastic waste in landfills and the natural environment. Since plastic use and disposal are projected to increase in the future, novel methods to effectively break down and dispose of current and future plastic waste are desperately needed. We show that the products of chemical deconstruction or pyrolysis of plastic can successfully sustain the growth of low-diversity microbial communities. These communities were enriched from multiple environmental sources and are capable of degrading complex xenobiotic carbon compounds. This study demonstrates that tandem chemical and biological processing can be used to degrade multiple types of plastics over a relatively short period of time and may be a future avenue for the mitigation of rapidly accumulating plastic waste.
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Affiliation(s)
- Lindsay I. Putman
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA
| | - Laura G. Schaerer
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA
| | - Ruochen Wu
- Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Daniel G. Kulas
- Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Ali Zolghadr
- Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Rebecca G. Ong
- Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - David R. Shonnard
- Department of Chemical Engineering, Michigan Technological University, Houghton, Michigan, USA
| | - Stephen M. Techtmann
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA
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16
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Qian X, Xin K, Zhang L, Zhou J, Xu A, Dong W, Jiang M. Integration of ARTP Mutation and Adaptive Laboratory Evolution to Reveal 1,4-Butanediol Degradation in Pseudomonas putida KT2440. Microbiol Spectr 2023; 11:e0498822. [PMID: 37067433 PMCID: PMC10269461 DOI: 10.1128/spectrum.04988-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 03/30/2023] [Indexed: 04/18/2023] Open
Abstract
Biotransformation of plastics or their depolymerization monomers as raw materials would offer a better end-of-life solutions to the plastic waste dilemma. 1,4-butanediol (BDO) is one of the major depolymerization monomers of many plastics polymers. BDO valorization presents great significance for waste plastic up-recycling and fermenting feedstock exploitation. In the present study, atmospheric pressure room temperature plasma (ARTP)-induced mutation combined with adaptive laboratory evolution (ALE) was used to improve the BDO utilization capability of Pseudomonas putida KT2440. The excellent mutant P. putida NB10 was isolated and stored in the China Typical Culture Preservation Center (CCTCC) with the deposit number M 2021482. Whole-genome resequencing and transcriptome analysis revealed that the BDO degradation process consists of β-oxidation, glyoxylate carboligase (GCL) pathway, glyoxylate cycle and gluconeogenesis pathway. The imbalance between the two key intermediates (acetyl-CoA and glycolyl-CoA) and the accumulation of cytotoxic aldehydes resulted in the weak metabolism performance of KT2440 in the utilization of BDO. The balance of the carbon flux and enhanced tolerance to cytotoxic intermediates endow NB10 with great BDO degradation capability. This study deeply revealed the metabolic mechanism behind BDO degradation and provided an excellent chassis cell for BDO further up-cycling to high-value chemicals. IMPORTANCE Plastic waste represents not only a global pollution problem but also a carbon-rich, low-cost, globally renewable feedstock for industrial biotechnology. BDO is the basic material for polybutylene terephthalate (PBT), poly butylene adipate-co-terephthalate (PBAT), poly (butylene succinate) (PBS), etc. Herein, the construction of BDO valorization cell factory presents great significance for waste plastic up-recycling and novel fermentation feedstock exploitation. However, BDO is hard to be metabolized and its metabolic pathway is unclear. This study presents a P. putida mutant NB10, obtained through the integration of ARTP and ALE, displaying significant growth improvement with BDO as the sole carbon source. Further genome resequencing, transcriptome analysis and genetic engineering deeply revealed the metabolic mechanism behind BDO degradation in P. putida, this study offers an excellent microbial chassis and modification strategy for plastic waste up-cycling.
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Affiliation(s)
- Xiujuan Qian
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Kaiyuan Xin
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Lili Zhang
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Jie Zhou
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Anming Xu
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Weiliang Dong
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
| | - Min Jiang
- Key Laboratory for Waste Plastics Biocatalytic Degradation and Recycling, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
- State Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, People’s Republic of China
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17
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García-Depraect O, Lebrero R, Martínez-Mendoza LJ, Rodriguez-Vega S, Aragão Börner R, Börner T, Muñoz R. Enhancement of biogas production rate from bioplastics by alkaline pretreatment. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 164:154-161. [PMID: 37059039 DOI: 10.1016/j.wasman.2023.04.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 03/21/2023] [Accepted: 04/04/2023] [Indexed: 06/19/2023]
Abstract
The effect of alkali-based pretreatment on the methanization of bioplastics was investigated. The tested bioplastics included PHB [poly(3-hydroxybutyrate)], PHBH [poly(3-hydroxybutyrate-co-3-hydroxyhexanoate)], PHBV [poly(3-hydroxybutyrate-co-3-hydroxyvalerate], PLA (polylactic acid), and a PLA/PCL [poly(caprolactone)] 80/20 blend. Prior to methanization tests, the powdered polymers (500-1000 μm) at a concentration of 50 g/L were subjected to alkaline pretreatment using NaOH 1 M for PLA and PLA/PCL, and NaOH 2 M for PHB-based materials. Following 7 days of pretreatment, the amount of solubilized carbon for PLA and its blend accounted for 92-98% of the total initial carbon, while lower carbon recoveries were recorded for most PHB-based materials (80-93%), as revealed by dissolved total organic carbon analysis. The pretreated bioplastics were then tested for biogas production by means of mesophilic biochemical methane potential tests. Compared to unpretreated PHBs, methanization rates of pretreated PHBs were accelerated by a factor of 2.7 to 9.1 with comparable (430 NmL CH4/g material feed) or slightly lower (15% in the case of PHBH) methane yields, despite featuring a 1.4-2.3 times longer lag phases. Both materials, PLA and the PLA/PCL blend, were only extensively digested when pretreated, yielding about 360-380 NmL CH4 per gram of material fed. Unpretreated PLA-based materials showed nearly zero methanization under the timeframe and experimental conditions tested. Overall, the results suggested that alkaline pretreatment can help to enhance the methanization kinetics of bioplastics.
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Affiliation(s)
- Octavio García-Depraect
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Raquel Lebrero
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Leonardo J Martínez-Mendoza
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Sara Rodriguez-Vega
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Rosa Aragão Börner
- Nestlé Research, Société des Produits Nestlé S.A., Route du Jorat 57, 1000 Lausanne, Switzerland
| | - Tim Börner
- Nestlé Research, Société des Produits Nestlé S.A., Route du Jorat 57, 1000 Lausanne, Switzerland
| | - Raúl Muñoz
- Institute of Sustainable Processes, Dr. Mergelina s/n, 47011 Valladolid, Spain; Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain.
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18
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Parera Olm I, Sousa DZ. Upgrading dilute ethanol to odd-chain carboxylic acids by a synthetic co-culture of Anaerotignum neopropionicum and Clostridium kluyveri. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:83. [PMID: 37194097 DOI: 10.1186/s13068-023-02336-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/03/2023] [Indexed: 05/18/2023]
Abstract
BACKGROUND Dilute ethanol streams generated during fermentation of biomass or syngas can be used as feedstocks for the production of higher value products. In this study, we describe a novel synthetic microbial co-culture that can effectively upgrade dilute ethanol streams to odd-chain carboxylic acids (OCCAs), specifically valerate and heptanoate. The co-culture consists of two strict anaerobic microorganisms: Anaerotignum neopropionicum, a propionigenic bacterium that ferments ethanol, and Clostridium kluyveri, well-known for its chain-elongating metabolism. In this co-culture, A. neopropionicum grows on ethanol and CO2 producing propionate and acetate, which are then utilised by C. kluyveri for chain elongation with ethanol as the electron donor. RESULTS A co-culture of A. neopropionicum and C. kluyveri was established in serum bottles with 50 mM ethanol, leading to the production of valerate (5.4 ± 0.1 mM) as main product of ethanol-driven chain elongation. In a continuous bioreactor supplied with 3.1 g ethanol L-1 d-1, the co-culture exhibited high ethanol conversion (96.6%) and produced 25% (mol/mol) valerate, with a steady-state concentration of 8.5 mM and a rate of 5.7 mmol L-1 d-1. In addition, up to 6.5 mM heptanoate was produced at a rate of 2.9 mmol L-1 d-1. Batch experiments were also conducted to study the individual growth of the two strains on ethanol. A. neopropionicum showed the highest growth rate when cultured with 50 mM ethanol (μmax = 0.103 ± 0.003 h-1) and tolerated ethanol concentrations of up to 300 mM. Cultivation experiments with C. kluyveri showed that propionate and acetate were used simultaneously for chain elongation. However, growth on propionate alone (50 mM and 100 mM) led to a 1.8-fold reduction in growth rate compared to growth on acetate. Our results also revealed sub-optimal substrate use by C. kluyveri during odd-chain elongation, where excessive ethanol was oxidised to acetate. CONCLUSIONS This study highlights the potential of synthetic co-cultivation in chain elongation processes to target the production of OCCAs. Furthermore, our findings shed light on to the metabolism of odd-chain elongation by C. kluyveri.
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Affiliation(s)
- Ivette Parera Olm
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands.
- Centre for Living Technologies, Eindhoven-Wageningen-Utrecht Alliance, Utrecht, The Netherlands.
| | - Diana Z Sousa
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
- Centre for Living Technologies, Eindhoven-Wageningen-Utrecht Alliance, Utrecht, The Netherlands
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19
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Wilkes RA, Waldbauer J, Carroll A, Nieto-Domínguez M, Parker DJ, Zhang L, Guss AM, Aristilde L. Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism. Nat Chem Biol 2023; 19:651-662. [PMID: 36747056 PMCID: PMC10154247 DOI: 10.1038/s41589-022-01237-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 11/29/2022] [Indexed: 02/08/2023]
Abstract
Critical to a sustainable energy future are microbial platforms that can process aromatic carbons from the largely untapped reservoir of lignin and plastic feedstocks. Comamonas species present promising bacterial candidates for such platforms because they can use a range of natural and xenobiotic aromatic compounds and often possess innate genetic constraints that avoid competition with sugars. However, the metabolic reactions of these species are underexplored, and the regulatory mechanisms are unknown. Here we identify multilevel regulation in the conversion of lignin-related natural aromatic compounds, 4-hydroxybenzoate and vanillate, and the plastics-related xenobiotic aromatic compound, terephthalate, in Comamonas testosteroni KF-1. Transcription-level regulation controls initial catabolism and cleavage, but metabolite-level thermodynamic regulation governs fluxes in central carbon metabolism. Quantitative 13C mapping of tricarboxylic acid cycle and cataplerotic reactions elucidates key carbon routing not evident from enzyme abundance changes. This scheme of transcriptional activation coupled with metabolic fine-tuning challenges outcome predictions during metabolic manipulations.
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Affiliation(s)
- Rebecca A Wilkes
- Department of Biological and Environmental Engineering, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, USA
- Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL, USA
| | - Jacob Waldbauer
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
| | - Austin Carroll
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Manuel Nieto-Domínguez
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Darren J Parker
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Lichun Zhang
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
| | - Adam M Guss
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Ludmilla Aristilde
- Department of Biological and Environmental Engineering, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, USA.
- Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL, USA.
- Northwestern Center for Synthetic Biology, Evanston, IL, USA.
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20
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Orlando M, Molla G, Castellani P, Pirillo V, Torretta V, Ferronato N. Microbial Enzyme Biotechnology to Reach Plastic Waste Circularity: Current Status, Problems and Perspectives. Int J Mol Sci 2023; 24:3877. [PMID: 36835289 PMCID: PMC9967032 DOI: 10.3390/ijms24043877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 02/08/2023] [Accepted: 02/10/2023] [Indexed: 02/17/2023] Open
Abstract
The accumulation of synthetic plastic waste in the environment has become a global concern. Microbial enzymes (purified or as whole-cell biocatalysts) represent emerging biotechnological tools for waste circularity; they can depolymerize materials into reusable building blocks, but their contribution must be considered within the context of present waste management practices. This review reports on the prospective of biotechnological tools for plastic bio-recycling within the framework of plastic waste management in Europe. Available biotechnology tools can support polyethylene terephthalate (PET) recycling. However, PET represents only ≈7% of unrecycled plastic waste. Polyurethanes, the principal unrecycled waste fraction, together with other thermosets and more recalcitrant thermoplastics (e.g., polyolefins) are the next plausible target for enzyme-based depolymerization, even if this process is currently effective only on ideal polyester-based polymers. To extend the contribution of biotechnology to plastic circularity, optimization of collection and sorting systems should be considered to feed chemoenzymatic technologies for the treatment of more recalcitrant and mixed polymers. In addition, new bio-based technologies with a lower environmental impact in comparison with the present approaches should be developed to depolymerize (available or new) plastic materials, that should be designed for the required durability and for being susceptible to the action of enzymes.
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Affiliation(s)
- Marco Orlando
- Department of Biotechnology and Life Sciences, University of Insubria, Via Dunant, 21100 Varese, Italy
| | - Gianluca Molla
- Department of Biotechnology and Life Sciences, University of Insubria, Via Dunant, 21100 Varese, Italy
| | - Pietro Castellani
- Department of Theoretical and Applied Sciences (DiSTA), University of Insubria, Via G.B. Vico 46, 21100 Varese, Italy
| | - Valentina Pirillo
- Department of Biotechnology and Life Sciences, University of Insubria, Via Dunant, 21100 Varese, Italy
| | - Vincenzo Torretta
- Department of Theoretical and Applied Sciences (DiSTA), University of Insubria, Via G.B. Vico 46, 21100 Varese, Italy
| | - Navarro Ferronato
- Department of Theoretical and Applied Sciences (DiSTA), University of Insubria, Via G.B. Vico 46, 21100 Varese, Italy
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21
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Becker J, Liebal UW, Phan AN, Ullmann L, Blank LM. Renewable carbon sources to biochemicals and -fuels: contributions of the smut fungi Ustilaginaceae. Curr Opin Biotechnol 2023; 79:102849. [PMID: 36446145 DOI: 10.1016/j.copbio.2022.102849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 10/27/2022] [Accepted: 11/01/2022] [Indexed: 11/27/2022]
Abstract
The global demand for food, fuels, and chemicals increases annually. Using renewable C-sources (i.e. biomass, CO2, and organic waste) is a prerequisite for a future free of fossil carbon. The smut fungi Ustilaginaceae naturally produce a versatile spectrum of valuable products, such as organic acids, polyols, and glycolipids, applicable in the food, energy, chemistry, and pharmaceutical sector. Combined with the use of alternative (co-)substrates (e.g. acetate, butanediol, formate, and glycerol), these microorganisms offer excellent potential for industrial biotechnology, thereby overcoming central challenges humankind faces, including CO2 release and land use. Here, we provide insight into fundamental production capacities, present genetic modifications that improve the biotechnical application, and review recent high-performance engineering of Ustilaginaceae toward relevant platform chemicals.
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Affiliation(s)
- Johanna Becker
- iAMB - Institute of Applied Microbiology, ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Ulf W Liebal
- iAMB - Institute of Applied Microbiology, ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - An Nt Phan
- iAMB - Institute of Applied Microbiology, ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Lena Ullmann
- iAMB - Institute of Applied Microbiology, ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Lars M Blank
- iAMB - Institute of Applied Microbiology, ABBt - Aachen Biology and Biotechnology, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany.
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22
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J RB, V GS. A systematic review on plastic waste conversion for a circular economy: recent trends and emerging technologies. Catal Sci Technol 2023. [DOI: 10.1039/d2cy02066a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023]
Abstract
Our biosphere has been adversely affected by plastic waste pollution, especially non-biodegradables in landfills, which induces hazardous chemical leaching and toxic gas emissions on burning into the atmosphere.
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Affiliation(s)
- Rajesh Banu J
- Department of Biotechnology, Central University of Tamil Nadu, Neelakudi, Thiruvarur, Tamil Nadu-610005, India
| | - Godvin Sharmila V
- Department of Civil Engineering, Rohini College of Engineering and Technology, Kanyakumari, Tamil Nadu, India
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23
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Hossain N, Chowdhury MA, Noman TI, Rana MM, Ali MH, Alruwais RS, Alam MS, Alamry KA, Aljabri MD, Rahman MM. Synthesis and Characterization of Eco-Friendly Bio-Composite from Fenugreek as a Natural Resource. Polymers (Basel) 2022; 14:polym14235141. [PMID: 36501535 PMCID: PMC9739852 DOI: 10.3390/polym14235141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 11/02/2022] [Accepted: 11/10/2022] [Indexed: 11/30/2022] Open
Abstract
The present study show the usability of starch (tamarind) based-bio-composite film reinforced by fenugreek by various percentages to replace the traditional petrochemical plastics. The prepared bio-composite films were systematically characterized using the universal testing machine (UTM), soil degradation, scanning electron microscope (SEM), X-ray diffraction (XRD), thermogravimetric analyzer (TGA), and antibacterial tests. The experiments showed that a lower percentage of fenugreek improves biodegradation and mechanical strength. More than 60% of biodegradation occurred in only 30 days. Almost 3 N/mm2 tensile strength and 6.5% tensile strain were obtained. The presence of micropores confirmed by SEM images may accelerate the biodegradation process. Antibacterial activity was observed with two samples of synthesized bio-composite, due to photoactive compounds confirmed by FTIR spectra. The glass transition temperature was shown to be higher than the room temperature, with the help of thermal analysis. The prepared bio-composite containing 5% and 10% fenugreek showed antibacterial activities.
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Affiliation(s)
- Nayem Hossain
- Department of Mechanical Engineering, IUBAT-International University of Business Agriculture and Technology, Dhaka 1230, Bangladesh
| | - Mohammad Asaduzzaman Chowdhury
- Department of Mechanical Engineering, Dhaka University of Engineering and Technology (DUET), Gazipur 1700, Bangladesh
- Correspondence: (M.A.C.); (M.D.A.); (M.M.R.)
| | - Tauhidul Islam Noman
- Department of Mechanical Engineering, Dhaka University of Engineering and Technology (DUET), Gazipur 1700, Bangladesh
| | - Md. Masud Rana
- Department of Mechanical Engineering, Dhaka University of Engineering and Technology (DUET), Gazipur 1700, Bangladesh
| | - Md. Hasan Ali
- Department of Mechanical Engineering, Dhaka University of Engineering and Technology (DUET), Gazipur 1700, Bangladesh
| | - Raja Saad Alruwais
- Chemistry Department, Faculty of Science and Humanities, Shaqra University, Dawadmi 11912, Saudi Arabia
| | - Md. Shafiul Alam
- Department of Mechanical Engineering, Dhaka University of Engineering and Technology (DUET), Gazipur 1700, Bangladesh
| | - Khalid A. Alamry
- Chemistry Department, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
| | - Mahmood D. Aljabri
- Department of Chemistry, University College in Al-Jamoum, Umm Al-Qura University, Makkah 21955, Saudi Arabia
- Correspondence: (M.A.C.); (M.D.A.); (M.M.R.)
| | - Mohammed M. Rahman
- Chemistry Department, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
- Center of Excellent for Advanced Materials Research (CEAMR) & Department of Chemistry, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
- Correspondence: (M.A.C.); (M.D.A.); (M.M.R.)
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24
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Plastic Waste Upcycling: A Sustainable Solution for Waste Management, Product Development, and Circular Economy. Polymers (Basel) 2022; 14:polym14224788. [PMID: 36432915 PMCID: PMC9694193 DOI: 10.3390/polym14224788] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 10/30/2022] [Accepted: 11/02/2022] [Indexed: 11/09/2022] Open
Abstract
Plastic waste pollution, including non-biodegradable landfills, leaching of toxic chemicals into soil and waterways, and emission of toxic gases into the atmosphere, is significantly affecting our environment. Conventional plastic waste recycling approaches generally produce lower value materials compared to the original plastic or recover inefficient heat energy. Lately, upcycling or the valorization approach has emerged as a sustainable solution to transform plastic waste into value-added products. In this review, we present an overview of recent advancements in plastic waste upcycling, such as vitrimerization, nanocomposite fabrication, additive manufacturing, catalytic transformation, and industrial biotechnology, envisaged with technical challenges, future developments, and new circular economy opportunities.
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Kim NK, Lee SH, Park HD. Current biotechnologies on depolymerization of polyethylene terephthalate (PET) and repolymerization of reclaimed monomers from PET for bio-upcycling: A critical review. BIORESOURCE TECHNOLOGY 2022; 363:127931. [PMID: 36100185 DOI: 10.1016/j.biortech.2022.127931] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 09/04/2022] [Accepted: 09/06/2022] [Indexed: 06/15/2023]
Abstract
The production of polyethylene terephthalate (PET) has drastically increased in the past half-century, reaching 30 million tons every year. The accumulation of this recalcitrant waste now threatens diverse ecosystems. Despite efforts to recycle PET wastes, its rate of recycling remains limited, as the current PET downcycling is mostly unremunerative. To address this problem, PET bio-upcycling, which integrates microbial depolymerization of PET followed by repolymerization of PET-derived monomers into value-added products, has been suggested. This article critically reviews current understanding of microbial PET hydrolysis, the metabolic mechanisms involved in PET degradation, PET hydrolases, and their genetic improvement. Furthermore, this review includes the use of meta-omics approaches to search PET-degrading microbiomes, microbes, and putative hydrolases. The current development of biosynthetic technologies to convert PET-derived materials into value-added products is also comprehensively discussed. The integration of various depolymerization and repolymerization biotechnologies enhances the prospects of a circular economy using waste PET.
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Affiliation(s)
- Na-Kyung Kim
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea
| | - Sang-Hoon Lee
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea
| | - Hee-Deung Park
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea.
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26
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Ali SS, Elsamahy T, Abdelkarim EA, Al-Tohamy R, Kornaros M, Ruiz HA, Zhao T, Li F, Sun J. Biowastes for biodegradable bioplastics production and end-of-life scenarios in circular bioeconomy and biorefinery concept. BIORESOURCE TECHNOLOGY 2022; 363:127869. [PMID: 36064080 DOI: 10.1016/j.biortech.2022.127869] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Revised: 08/23/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
Due to global urbanization, industrialization, and economic development, biowastes generation represents negative consequences on the environment and human health. The use of generated biowastes as a feedstock for biodegradable bioplastic production has opened a new avenue for environmental sustainability from the circular (bio)economy standpoint. Biodegradable bioplastic production can contribute to the sustainability pillars (environmental, economic, and social). Furthermore, bioenergy, biomass, and biopolymers production after recycling of biodegradable bioplastic can help to maintain the energy-environment balance. Several types of biodegradable bioplastic, such as starch-based, polyhydroxyalkanoates, polylactic acid, and polybutylene adipate terephthalate, can achieve this aim. In this review, an overview of the main biowastes valorization routes and the main biodegradable bioplastic types of production, application, and biodegradability are discussed to achieve the transition to the circular economy. Additionally, end-of-life scenarios (up-cycle and down-cycle) are reviewed to attain the maximum environmental, social, and economic benefit from biodegradable bioplastic products under biorefinery concept.
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Affiliation(s)
- Sameh S Ali
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China; Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt.
| | - Tamer Elsamahy
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Esraa A Abdelkarim
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Rania Al-Tohamy
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Michael Kornaros
- Laboratory of Biochemical Engineering & Environmental Technology (LBEET), Department of Chemical Engineering, University of Patras, 1 Karatheodori Str., University Campus, Patras 26504, Greece
| | - Héctor A Ruiz
- Biorefinery Group, Food Research Department, School of Chemistry, Autonomous University of Coahuila, Saltillo, Coahuila 25280, Mexico
| | - Tong Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, Heilongjiang Province 150090, China
| | - Fanghua Li
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, Heilongjiang Province 150090, China.
| | - Jianzhong Sun
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China.
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27
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Tanveer M, Khan SAR, Umar M, Yu Z, Sajid MJ, Haq IU. Waste management and green technology: future trends in circular economy leading towards environmental sustainability. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:80161-80178. [PMID: 36197607 PMCID: PMC9532236 DOI: 10.1007/s11356-022-23238-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 09/20/2022] [Indexed: 05/16/2023]
Abstract
The effective treatment of waste to be used as a resource in future has a major role in achieving environmental sustainability and moving towards circular economy. The current research is aimed to provide in-depth detail regarding prominent trends and research themes, evolution, future research orientation, main characteristics, and mapping of research publications on waste management, technological innovation in circular economy domain from the year 2000 to 2021. Different analyses including text mining and bibliometric and content analyses were applied to answer the research question and provide the details on aforementioned variables. From the bibliometric analyses, a total of 1118 articles were drawn out from the Scopus database to conceptualize the core body of research. As a result, the following themes were identified: electronic waste, circular economy transition, plastic waste, bio-based waste management, lifecycle assessment, and ecological impacts, and construction and demolition waste management. The highlighted features, future research orientation, and prominent research perspective can provide guideline for future research to enrich the literature through conducting studies on provided research directions and help lead waste management and technological innovation policymakers, professionals, and practitioners in moving towards circular transition.
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Affiliation(s)
- Muhammad Tanveer
- Department of Business Administration, Imam Mohammad Ibn Saud Islamic University, Riyadh, Saudi Arabia
| | | | - Muhammad Umar
- Faculty of Business Economics and Social Development, Universiti Malaysia Terengganu, Kuala Nerus, Malaysia
| | - Zhang Yu
- School of Economics and Management, Chang’an University, Xi’an, China
- Department of Business Administration, ILMA University, Karachi, Pakistan
| | - Muhammad Jawad Sajid
- School of Management and Engineering, Xuzhou University of Technology, Xuzhou, China
| | - Ikram Ul Haq
- Kind Saud Bin Abdul-Aziz University for Health Sciences, Riyadh, Saudi Arabia
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28
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Montemurro M, Salvatori G, Alfano S, Martinelli A, Verni M, Pontonio E, Villano M, Rizzello CG. Exploitation of wasted bread as substrate for polyhydroxyalkanoates production through the use of Haloferax mediterranei and seawater. Front Microbiol 2022; 13:1000962. [PMID: 36212839 PMCID: PMC9534330 DOI: 10.3389/fmicb.2022.1000962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
The use of the halophile microorganism Haloferax mediterranei, able to synthesize poly(hydroxybutyrate-hydroxyvalerate) (PHBV), is considered as a promising tool for the industrial production of bioplastic through bioprocessing. A consistent supplementation of the growth substrate in carbohydrates and minerals is overall necessary to allow its PHBV production. In this work, wasted bread was used as substrate for bioplastic production by microbial fermentation. Instead of the consistent and expensive minerals supplement required for Hfx. mediterranei DSM1411 growth, microfiltered seawater was added to the wasted bread-derived substrate. The suitable ratio of wasted bread homogenate and seawater, corresponding to 40:60, was selected. The addition of proteases and amylase to the bread homogenate promoted the microbial growth but it did not correspond to the increase of bioplastic production by the microorganism, that reach, under the experimental conditions, 1.53 g/L. An extraction procedure of the PHBV from cells, based on repeated washing with water, followed or not by a purification through ethanol precipitation, was applied instead of the conventional extraction with chloroform. Yield of PHBV obtained using the different extraction methods were 21.6 ± 3.6 (standard extraction/purification procedure with CHCl3:H2O mixture), 24.8 ± 3.0 (water-based extraction), and 19.8 ± 3.3 mg PHAs/g of wasted bread (water-based extraction followed by ethanol purification). Slightly higher hydroxyvalerate content (12.95 vs 10.78%, w/w) was found in PHBV obtained through the water-based extraction compared to the conventional one, moreover, the former was characterized by purity of 100% (w/w). Results demonstrated the suitability of wasted bread, supplemented with seawater, to be used as substrate for bioplastic production through fermentation. Results moreover demonstrated that a solvent-free extraction, exclusively based on osmotic shock, could be used to recover the bioplastic from cells.
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Affiliation(s)
- Marco Montemurro
- Department of Soil, Plant and Food Science, University of Bari Aldo Moro, Bari, Italy
| | - Gaia Salvatori
- Department of Chemistry, Sapienza University of Rome, Rome, Italy
| | - Sara Alfano
- Department of Chemistry, Sapienza University of Rome, Rome, Italy
| | | | - Michela Verni
- Department of Soil, Plant and Food Science, University of Bari Aldo Moro, Bari, Italy
| | - Erica Pontonio
- Department of Soil, Plant and Food Science, University of Bari Aldo Moro, Bari, Italy
| | - Marianna Villano
- Department of Chemistry, Sapienza University of Rome, Rome, Italy
- Research Center for Applied Sciences to the Safeguard of Environment and Cultural Heritage (CIABC), Sapienza University of Rome, Rome, Italy
| | - Carlo Giuseppe Rizzello
- Department of Environmental Biology, Sapienza University of Rome, Rome, Italy
- *Correspondence: Carlo Giuseppe Rizzello,
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29
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Johnston B, Adamus G, Ekere AI, Kowalczuk M, Tchuenbou-Magaia F, Radecka I. Bioconversion of Plastic Waste Based on Mass Full Carbon Backbone Polymeric Materials to Value-Added Polyhydroxyalkanoates (PHAs). Bioengineering (Basel) 2022; 9:bioengineering9090432. [PMID: 36134978 PMCID: PMC9496005 DOI: 10.3390/bioengineering9090432] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/26/2022] [Accepted: 08/28/2022] [Indexed: 11/28/2022] Open
Abstract
This review article will discuss the ways in which various polymeric materials, such as polyethylene (PE), polypropylene (PP), polystyrene (PS), and poly(ethylene terephthalate) (PET) can potentially be used to produce bioplastics, such as polyhydroxyalkanoates (PHAs) through microbial cultivation. We will present up-to-date information regarding notable microbial strains that are actively used in the biodegradation of polyolefins. We will also review some of the metabolic pathways involved in the process of plastic depolymerization and discuss challenges relevant to the valorization of plastic waste. The aim of this review is also to showcase the importance of methods, including oxidative degradation and microbial-based processes, that are currently being used in the fields of microbiology and biotechnology to limit the environmental burden of waste plastics. It is our hope that this article will contribute to the concept of bio-upcycling plastic waste to value-added products via microbial routes for a more sustainable future.
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Affiliation(s)
- Brian Johnston
- Science in Industry Research Centre (SIRC), SciTech Innovation Hub, Wolverhampton Science Park, Glaisher Drive, Wolverhampton WV10 9RU, UK
- School of Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton WV1 1LY, UK
- Correspondence: (B.J.); (I.R.)
| | - Grazyna Adamus
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 41-800 Zabrze, Poland
| | - Anabel Itohowo Ekere
- School of Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton WV1 1LY, UK
| | - Marek Kowalczuk
- School of Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton WV1 1LY, UK
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 41-800 Zabrze, Poland
| | - Fideline Tchuenbou-Magaia
- School of Engineering, Computing and Mathematical Sciences, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton WV1 1LY, UK
| | - Iza Radecka
- School of Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton WV1 1LY, UK
- Correspondence: (B.J.); (I.R.)
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30
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Carruthers DN, Lee TS. Translating advances in microbial bioproduction to sustainable biotechnology. Front Bioeng Biotechnol 2022; 10:968437. [PMID: 36082166 PMCID: PMC9445250 DOI: 10.3389/fbioe.2022.968437] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 07/21/2022] [Indexed: 11/24/2022] Open
Abstract
Advances in synthetic biology have radically changed our ability to rewire microorganisms and significantly improved the scalable production of a vast array of drop-in biopolymers and biofuels. The success of a drop-in bioproduct is contingent on market competition with petrochemical analogues and weighted upon relative economic and environmental metrics. While the quantification of comparative trade-offs is critical for accurate process-level decision making, the translation of industrial ecology to synthetic biology is often ambiguous and assessment accuracy has proven challenging. In this review, we explore strategies for evaluating industrial biotechnology through life cycle and techno-economic assessment, then contextualize how recent developments in synthetic biology have improved process viability by expanding feedstock availability and the productivity of microbes. By juxtaposing biological and industrial constraints, we highlight major obstacles between the disparate disciplines that hinder accurate process evaluation. The convergence of these disciplines is crucial in shifting towards carbon neutrality and a circular bioeconomy.
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Affiliation(s)
- David N. Carruthers
- Joint BioEnergy Institute, Emeryville, CA, United States
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Taek Soon Lee
- Joint BioEnergy Institute, Emeryville, CA, United States
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
- *Correspondence: Taek Soon Lee,
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31
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de Lorenzo V. Environmental Galenics: large-scale fortification of extant microbiomes with engineered bioremediation agents. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210395. [PMID: 35757882 PMCID: PMC9234819 DOI: 10.1098/rstb.2021.0395] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Contemporary synthetic biology-based biotechnologies are generating tools and strategies for reprogramming genomes for specific purposes, including improvement and/or creation of microbial processes for tackling climate change. While such activities typically work well at a laboratory or bioreactor scale, the challenge of their extensive delivery to multiple spatio-temporal dimensions has hardly been tackled thus far. This state of affairs creates a research niche for what could be called Environmental Galenics (EG), i.e. the science and technology of releasing designed biological agents into deteriorated ecosystems for the sake of their safe and effective recovery. Such endeavour asks not just for an optimal performance of the biological activity at stake, but also the material form and formulation of the agents, their propagation and their interplay with the physico-chemical scenario where they are expected to perform. EG also encompasses adopting available physical carriers of microorganisms and channels of horizontal gene transfer as potential paths for spreading beneficial activities through environmental microbiomes. While some of these propositions may sound unsettling to anti-genetically modified organisms sensitivities, they may also fall under the tag of TINA (there is no alternative) technologies in the cases where a mere reduction of emissions will not help the revitalization of irreversibly lost ecosystems. This article is part of the theme issue ‘Ecological complexity and the biosphere: the next 30 years’.
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Affiliation(s)
- Víctor de Lorenzo
- Systems Biology Department, Centro Nacional de Biotecnología-CSIC, Campus de Cantoblanco, Madrid 28049, Spain
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32
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Nikolaivits E, Taxeidis G, Gkountela C, Vouyiouka S, Maslak V, Nikodinovic-Runic J, Topakas E. A polyesterase from the Antarctic bacterium Moraxella sp. degrades highly crystalline synthetic polymers. JOURNAL OF HAZARDOUS MATERIALS 2022; 434:128900. [PMID: 35452981 DOI: 10.1016/j.jhazmat.2022.128900] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 03/24/2022] [Accepted: 04/09/2022] [Indexed: 06/14/2023]
Abstract
The uncontrolled release of plastics in the environment has rendered them ubiquitous around the planet, threatening the wildlife and human health. Biodegradation and valorization of plastics has emerged as an eco-friendly alternative to conventional management techniques. Discovery of novel polymer-degrading enzymes with diversified properties is hence an important task in order to explore different operational conditions for plastic-waste upcycling. In the present study, a barely studied psychrophilic enzyme (MoPE) from the Antractic bacterium Moraxella sp. was heterologously expressed, characterized and its potential in polymer degradation was further investigated. Based on its amino acid composition and structure, MoPE resembled PET-degrading enzymes, sharing features from both mesophilic and thermophilic homologues. MoPE hydrolyzes non-biodegradable plastics, such as polyethylene terephthalate and polyurethane, as well as biodegradable synthetic polyesters, such as polycaprolactone, polyhydroxy butyrate, polybutylene succinate and polylactic acid. The mass fraction crystallinity of the aliphatic polymers tested ranged from 11% to 64% highlighting the potential of the enzyme to hydrolyze highly crystalline plastics. MoPE was able to degrade different types of amorphous and semi-crystalline PET, releasing water-soluble monomers and showed synergy with a feruloyl esterase of the tannase family for the release of terephthalic acid. Based on the above, MoPE was characterized as a versatile psychrophilic polyesterase demonstrating a broad-range plastics degradation potential.
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Affiliation(s)
- Efstratios Nikolaivits
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - George Taxeidis
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Christina Gkountela
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Stamatina Vouyiouka
- Laboratory of Polymer Technology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece
| | - Veselin Maslak
- University of Belgrade, Faculty of Chemistry, Belgrade, Serbia
| | - Jasmina Nikodinovic-Runic
- Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Evangelos Topakas
- Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece.
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Rana AK, Thakur MK, Saini AK, Mokhta SK, Moradi O, Rydzkowski T, Alsanie WF, Wang Q, Grammatikos S, Thakur VK. Recent developments in microbial degradation of polypropylene: Integrated approaches towards a sustainable environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 826:154056. [PMID: 35231525 DOI: 10.1016/j.scitotenv.2022.154056] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 02/15/2022] [Accepted: 02/17/2022] [Indexed: 06/14/2023]
Abstract
Fossil-fuel-based plastics have many enticing properties, but their production has resulted in significant environmental issues that require immediate attention. Despite the fact that these polymers are manmade, some bacteria can degrade and metabolise them, suggesting that biotechnologies based on the principle of plastic biodegradation could be beneficial. Among different types of plastics, polypropylene (PP), either having low or high density, is one of the most consumed plastics (18.85%). Their debasement under natural conditions is somewhat tricky. Still, their debasement under natural conditions is rather difficult slightly. However, different scientists have still made efforts by employing other microbes such as bacteria, fungi, and guts bacteria of larvae of insects to bio-deteriorate the PP plastic. Pre-irradiation techniques (ultraviolet and gamma irradiations), compatibilizers, and bio-additives (natural fibers, starch, and polylactic acid) have been found to impact percent bio-deterioration of different PP derivatives stronglythe various. The fungal and bacterial study showed that PP macro/microplastic might serve as an energy source and sole carbon during bio-degradation. Generally, gravimetric method or physical characterization techniques such as FTIR, XRD, SEM, etc., are utilized to affirm the bio-degradation of PP plastics-based materials. However, these techniques are not enough to warrant the bio-deterioration of PP. In this regard, a new technique approach that measures the amount of carbon dioxide emitted during bacterial or fungus degradation has also been discussed. In addition, further exploration is needed on novel isolates from plastisphere environments, sub-atomic strategies to describe plastic-debasing microorganisms and improve enzymatic action strategies, and omics-based innovations to speed up plastic waste bio-deterioration.
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Affiliation(s)
| | - Manju Kumari Thakur
- Department of Chemistry, Govt. Degree College Sarkaghat, Himachal Pradesh University, Shimla 171005, India
| | - Adesh Kumar Saini
- Department of Biotechnology, MMEC, Maharishi Markandeshwar (Deemed to be University), Mullana, Ambala, Haryana 133207, India.
| | - Sudesh Kumar Mokhta
- Department of Environment, Science & Technology, Government of Himachal Pradesh, 171001, India
| | - Omid Moradi
- Faculty of Science, Shahr-e-Qods Branch, Islamic Azad University, Tehran, Iran.
| | - Tomasz Rydzkowski
- Department of Mechanical Engineering, Koszalin University of Technology, Raclawicka Str. 15-17, 75-620 Koszalin, Poland.
| | - Walaa F Alsanie
- Department of Clinical Laboratories Sciences, The Faculty of Applied Medical Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia.
| | - Qilin Wang
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW 2007, Australia.
| | - Sotirios Grammatikos
- Laboratory of Advanced & Sustainable Engineering Materials (ASEMlab), Group of Sustainable Composites, Department of Manufacturing and Civil Engineering, Norwegian University of Science and Technology, Gjøvik 2815, Norway
| | - Vijay Kumar Thakur
- Biorefining and Advanced Materials Research Center, SRUC, Edinburgh, UK; School of Engineering, University of Petroleum & Energy Studies (UPES), Dehradun 248007, India.
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Brandenberg OF, Schubert OT, Kruglyak L. Towards synthetic PETtrophy: Engineering Pseudomonas putida for concurrent polyethylene terephthalate (PET) monomer metabolism and PET hydrolase expression. Microb Cell Fact 2022; 21:119. [PMID: 35717313 PMCID: PMC9206389 DOI: 10.1186/s12934-022-01849-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 05/26/2022] [Indexed: 12/27/2022] Open
Abstract
BACKGROUND Biocatalysis offers a promising path for plastic waste management and valorization, especially for hydrolysable plastics such as polyethylene terephthalate (PET). Microbial whole-cell biocatalysts for simultaneous PET degradation and growth on PET monomers would offer a one-step solution toward PET recycling or upcycling. We set out to engineer the industry-proven bacterium Pseudomonas putida for (i) metabolism of PET monomers as sole carbon sources, and (ii) efficient extracellular expression of PET hydrolases. We pursued this approach for both PET and the related polyester polybutylene adipate co-terephthalate (PBAT), aiming to learn about the determinants and potential applications of bacterial polyester-degrading biocatalysts. RESULTS P. putida was engineered to metabolize the PET and PBAT monomer terephthalic acid (TA) through genomic integration of four tphII operon genes from Comamonas sp. E6. Efficient cellular TA uptake was enabled by a point mutation in the native P. putida membrane transporter MhpT. Metabolism of the PET and PBAT monomers ethylene glycol and 1,4-butanediol was achieved through adaptive laboratory evolution. We then used fast design-build-test-learn cycles to engineer extracellular PET hydrolase expression, including tests of (i) the three PET hydrolases LCC, HiC, and IsPETase; (ii) genomic versus plasmid-based expression, using expression plasmids with high, medium, and low cellular copy number; (iii) three different promoter systems; (iv) three membrane anchor proteins for PET hydrolase cell surface display; and (v) a 30-mer signal peptide library for PET hydrolase secretion. PET hydrolase surface display and secretion was successfully engineered but often resulted in host cell fitness costs, which could be mitigated by promoter choice and altering construct copy number. Plastic biodegradation assays with the best PET hydrolase expression constructs genomically integrated into our monomer-metabolizing P. putida strains resulted in various degrees of plastic depolymerization, although self-sustaining bacterial growth remained elusive. CONCLUSION Our results show that balancing extracellular PET hydrolase expression with cellular fitness under nutrient-limiting conditions is a challenge. The precise knowledge of such bottlenecks, together with the vast array of PET hydrolase expression tools generated and tested here, may serve as a baseline for future efforts to engineer P. putida or other bacterial hosts towards becoming efficient whole-cell polyester-degrading biocatalysts.
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Affiliation(s)
- Oliver F Brandenberg
- Department of Human Genetics, Department of Biological Chemistry, and Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, USA.
| | - Olga T Schubert
- Department of Human Genetics, Department of Biological Chemistry, and Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, USA.,Department of Environmental Microbiology, EAWAG, 8600, Dübendorf, Switzerland.,Department of Environmental Systems Science, ETH Zurich, 8092, Zürich, Switzerland
| | - Leonid Kruglyak
- Department of Human Genetics, Department of Biological Chemistry, and Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, USA.
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Benito-Vaquerizo S, Parera Olm I, de Vroet T, Schaap PJ, Sousa DZ, Martins Dos Santos VAP, Suarez-Diez M. Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum. Microb Cell Fact 2022; 21:116. [PMID: 35710409 PMCID: PMC9205015 DOI: 10.1186/s12934-022-01841-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 05/26/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Microbial production of propionate from diluted streams of ethanol (e.g., deriving from syngas fermentation) is a sustainable alternative to the petrochemical production route. Yet, few ethanol-fermenting propionigenic bacteria are known, and understanding of their metabolism is limited. Anaerotignum neopropionicum is a propionate-producing bacterium that uses the acrylate pathway to ferment ethanol and CO2 to propionate and acetate. In this work, we used computational and experimental methods to study the metabolism of A. neopropionicum and, in particular, the pathway for conversion of ethanol into propionate. RESULTS Our work describes iANEO_SB607, the first genome-scale metabolic model (GEM) of A. neopropionicum. The model was built combining the use of automatic tools with an extensive manual curation process, and it was validated with experimental data from this and published studies. The model predicted growth of A. neopropionicum on ethanol, lactate, sugars and amino acids, matching observed phenotypes. In addition, the model was used to implement a dynamic flux balance analysis (dFBA) approach that accurately predicted the fermentation profile of A. neopropionicum during batch growth on ethanol. A systematic analysis of the metabolism of A. neopropionicum combined with model simulations shed light into the mechanism of ethanol fermentation via the acrylate pathway, and revealed the presence of the electron-transferring complexes NADH-dependent reduced ferredoxin:NADP+ oxidoreductase (Nfn) and acryloyl-CoA reductase-EtfAB, identified for the first time in this bacterium. CONCLUSIONS The realisation of the GEM iANEO_SB607 is a stepping stone towards the understanding of the metabolism of the propionate-producer A. neopropionicum. With it, we have gained insight into the functioning of the acrylate pathway and energetic aspects of the cell, with focus on the fermentation of ethanol. Overall, this study provides a basis to further exploit the potential of propionigenic bacteria as microbial cell factories.
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Affiliation(s)
- Sara Benito-Vaquerizo
- Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands
| | - Ivette Parera Olm
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands
| | - Thijs de Vroet
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands
| | - Peter J Schaap
- Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands
| | - Diana Z Sousa
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands.,Centre for Living Technologies, Alliance TU/e, WUR, UU, UMC Utrecht, Vening Meinesz building C, Princetonlaan 6, Utrecht, 3584 CB, The Netherlands
| | - Vitor A P Martins Dos Santos
- Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands.,Bioprocess Engineering, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - Maria Suarez-Diez
- Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Stippeneng 4, Wageningen, 6708WE, The Netherlands.
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Oh YR, Jang YA, Song JK, Eom GT. Efficient enzymatic depolymerization of polycaprolactone into 6-hydroxyhexanoic acid by optimizing reaction conditions and microbial conversion of 6-hydroxyhexanoic acid into adipic acid for eco-friendly upcycling of polycaprolactone. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Erickson M, Han Y, Rasulev B, Kilin D. Molecular Dynamics Study of the Photodegradation of Polymeric Chains. J Phys Chem Lett 2022; 13:4374-4380. [PMID: 35544382 DOI: 10.1021/acs.jpclett.2c00802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The development of reusable polymeric materials inspires an attempt to combine renewable biomass with upcycling to form a biorenewable closed system. It has been reported that 2,5-furandicarboxylic acid (FDCA) can be recovered for recycling when incorporated as monomers into photodegradable polymeric systems. Here, we conduct density functional theory (DFT) studies with periodic boundary conditions on microscopic structures involved in the photodegradation of polymeric chains incorporating FDCA and 2-nitro-1,3-benzenedimethanol. The photodegradation process of polymeric chains is studied using time-dependent excited-state molecular dynamics (TDESMD) in vacuum and aqueous environments. Changes in the photophysical properties for reaction intermediates are characterized by ground-state observables. The distribution of reaction intermediates and products is obtained from TDESMD trajectories using cheminformatics techniques. Results show that a higher degree of polymeric chain degradation is achieved in the vacuum environment. Additionally, one finds that the FDCA molecule is recoverable in the aqueous environment, in qualitative agreement with experimental findings.
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Affiliation(s)
- Meade Erickson
- Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, North Dakota 58108, United States
| | - Yulun Han
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108, United States
| | - Bakhtiyor Rasulev
- Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, North Dakota 58108, United States
| | - Dmitri Kilin
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108, United States
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38
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Benimana F, Potoroko IY, Pathak P, Sonawane SH, Sonawane S, Bagale UD. Ultrasound-assisted synthesis of nanoemulsion/protein blend for packaging application. Food Sci Nutr 2022; 10:1537-1547. [PMID: 35592281 PMCID: PMC9094475 DOI: 10.1002/fsn3.2776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 10/27/2021] [Accepted: 11/17/2021] [Indexed: 11/11/2022] Open
Abstract
In the present work, we studied the formation of sunflower oil nanoemulsion using ultrasound techniques. Later, we investigated the development of active films based on a mixture of whey protein containing sunflower oil base nanoemulsion with different concentrations (10, 25, and 50% of total whey protein). The prepared film was by analyzing using the Fourier transform infrared (FTIR), X‐ray diffraction (XRD), and field‐emission scanning electron microscope (FE‐SEM). The film shows no changes in its integrity and crystallinity compared to the virgin film. The presence of nanoemulsion improves the mechanical properties from 2.75 MPa to 3.52 MPa while it decreases the water vapor permeability from 3.4 × 10–10 to 1.3 × 10−10g/m.s.Pa for concentrations NE (50% of Whey protein). The antioxidant activity for Tween 20 nanoemulsion is 38.7% compared to 36.1% for Tween 80 nanoemulsion. The antimicrobial activity of the film contains sunflower nanoemulsion higher than virgin films. The results showed the potential of blend film of whey protein with nanoemulsion for active films for novel food protection.
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Affiliation(s)
- Fidele Benimana
- Department of Food and Biotechnology South Ural State University Chelyabinsk Russia
| | - Irina Y Potoroko
- Department of Food and Biotechnology South Ural State University Chelyabinsk Russia
| | - Prateek Pathak
- Laboratory of Computational Modeling of Drugs Higher Medical and Biological School South Ural State University Chelyabinsk Russia
| | - Shirish H Sonawane
- Department of Chemical Engineering National Institute of Technology Warangal India
| | - Shriram Sonawane
- Department of Chemical Engineering Visvesvaraya National Institute of Technology Nagpur India
| | - Uday D Bagale
- Department of Food and Biotechnology South Ural State University Chelyabinsk Russia
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Sarkar B, Dissanayake PD, Bolan NS, Dar JY, Kumar M, Haque MN, Mukhopadhyay R, Ramanayaka S, Biswas JK, Tsang DCW, Rinklebe J, Ok YS. Challenges and opportunities in sustainable management of microplastics and nanoplastics in the environment. ENVIRONMENTAL RESEARCH 2022; 207:112179. [PMID: 34624271 DOI: 10.1016/j.envres.2021.112179] [Citation(s) in RCA: 61] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 10/01/2021] [Accepted: 10/02/2021] [Indexed: 05/06/2023]
Abstract
The accumulation of microplastics (MPs) and nanoplastics (NPs) in terrestrial and aquatic ecosystems has raised concerns because of their adverse effects on ecosystem functions and human health. Plastic waste management has become a universal problem in recent years. Hence, sustainable plastic waste management techniques are vital for achieving the United Nations Sustainable Development Goals. Although many reviews have focused on the occurrence and impact of micro- and nanoplastics (MNPs), there has been limited focus on the management of MNPs. This review first summarizes the ecotoxicological impacts of plastic waste sources and issues related to the sustainable management of MNPs in the environment. This paper then critically evaluates possible approaches for incorporating plastics into the circular economy in order to cope with the problem of plastics. Pollution associated with MNPs can be tackled through source reduction, incorporation of plastics into the circular economy, and suitable waste management. Appropriate infrastructure development, waste valorization, and economically sound plastic waste management techniques and viable alternatives are essential for reducing MNPs in the environment. Policymakers must pay more attention to this critical issue and implement appropriate environmental regulations to achieve environmental sustainability.
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Affiliation(s)
- Binoy Sarkar
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | - Pavani Dulanja Dissanayake
- Korea Biochar Research Center, APRU Sustainable Waste Management Program & Division of Environmental Science and Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea; Soils and Plant Nutrition Division, Coconut Research Institute, Lunuwila 61150, Sri Lanka
| | - Nanthi S Bolan
- School of Agriculture and Environment, The University of Western Australia, Perth, Western Australia, 6001, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia, 6001, Australia; College of Engineering, Science and Environment, University of Newcastle, Callaghan, New South Wales, 2308, Australia
| | - Jaffer Yousuf Dar
- Division of Irrigation and Drainage Engineering, ICAR-Central Soil Salinity Research Institute, Karnal, 132001, India
| | - Manish Kumar
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China; CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, Maharashtra, India
| | - Md Niamul Haque
- Korea Biochar Research Center, APRU Sustainable Waste Management Program & Division of Environmental Science and Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea; Department of Marine Science, College of Natural Sciences & Research Institute of Basic Sciences, Incheon National University, Incheon, 22012, Republic of Korea
| | - Raj Mukhopadhyay
- Division of Irrigation and Drainage Engineering, ICAR-Central Soil Salinity Research Institute, Karnal, 132001, India
| | - Sammani Ramanayaka
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | - Jayanta Kumar Biswas
- Department of Ecological Studies & International Centre for Ecological Engineering, University of Kalyani, Kalyani, Nadia, 741235, West Bengal, India
| | - Daniel C W Tsang
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water- and Waste Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, 42285, Wuppertal, Germany; Department of Environment, Energy and Geoinformatics, Sejong University, 98 Gunja-Dong, Seoul, Republic of Korea.
| | - Yong Sik Ok
- Korea Biochar Research Center, APRU Sustainable Waste Management Program & Division of Environmental Science and Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea.
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Shanker R, Khan D, Hossain R, Islam MT, Locock K, Ghose A, Sahajwalla V, Schandl H, Dhodapkar R. Plastic waste recycling: existing Indian scenario and future opportunities. INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND TECHNOLOGY : IJEST 2022; 20:5895-5912. [PMID: 35401771 PMCID: PMC8976220 DOI: 10.1007/s13762-022-04079-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 02/23/2022] [Accepted: 03/04/2022] [Indexed: 05/05/2023]
Abstract
This review article aims to suggest recycling technological options in India and illustrates plastic recycling clusters and reprocessing infrastructure for plastic waste (PW) recycling in India. The study shows that a majority of states in India are engaged in recycling, road construction, and co-processing in cement kilns while reprocessing capabilities among the reprocessors are highest for polypropylene (PP) and polyethylene (PE) polymer materials. This review suggests that there are key opportunities for mechanical recycling, chemical recycling, waste-to-energy approaches, and bio-based polymers as an alternative to deliver impact to India's PW problem. On the other hand, overall, polyurethane, nylon, and polyethylene terephthalate appear most competitive for chemical recycling. Compared to conventional fossil fuel energy sources, polyethylene (PE), polypropylene (PP), and polystyrene are the three main polymers with higher calorific values suitable for energy production. Also, multi-sensor-based artificial intelligence and blockchain technology and digitization for PW recycling can prove to be the future for India in the waste flow chain and its management. Overall, for a circular plastic economy in India, there is a necessity for a technology-enabled accountable quality-assured collaborative supply chain of virgin and recycled material. Supplementary Information The online version contains supplementary material available at 10.1007/s13762-022-04079-x.
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Affiliation(s)
- R. Shanker
- Council of Scientific and Industrial Research-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440 020 India
| | - D. Khan
- Council of Scientific and Industrial Research-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440 020 India
| | - R. Hossain
- Centre for Sustainable Materials Research and Technology, SMaRT@UNSW, School of Materials Science and Engineering, UNSW Sydney, Sydney, NSW 2052 Australia
| | - Md. T. Islam
- Centre for Sustainable Materials Research and Technology, SMaRT@UNSW, School of Materials Science and Engineering, UNSW Sydney, Sydney, NSW 2052 Australia
| | - K. Locock
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) and Australian National University, Canberra, ACT 2601 Australia
| | - A. Ghose
- Centre for Sustainable Materials Research and Technology, SMaRT@UNSW, School of Materials Science and Engineering, UNSW Sydney, Sydney, NSW 2052 Australia
| | - V. Sahajwalla
- Centre for Sustainable Materials Research and Technology, SMaRT@UNSW, School of Materials Science and Engineering, UNSW Sydney, Sydney, NSW 2052 Australia
| | - H. Schandl
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) and Australian National University, Canberra, ACT 2601 Australia
| | - R. Dhodapkar
- Council of Scientific and Industrial Research-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440 020 India
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Yan X, Liu X, Yu LP, Wu F, Jiang XR, Chen GQ. Biosynthesis of diverse α,ω-diol-derived polyhydroxyalkanoates by engineered Halomonas bluephagenesis. Metab Eng 2022; 72:275-288. [DOI: 10.1016/j.ymben.2022.04.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 04/07/2022] [Accepted: 04/09/2022] [Indexed: 01/08/2023]
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42
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Waltmann C, Mills CE, Wang J, Qiao B, Torkelson JM, Tullman-Ercek D, de la Cruz MO. Functional enzyme-polymer complexes. Proc Natl Acad Sci U S A 2022; 119:e2119509119. [PMID: 35312375 PMCID: PMC9060439 DOI: 10.1073/pnas.2119509119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 02/21/2022] [Indexed: 01/23/2023] Open
Abstract
SignificanceThe use of biological enzyme catalysts could have huge ramifications for chemical industries. However, these enzymes are often inactive in nonbiological conditions, such as high temperatures, present in industrial settings. Here, we show that the enzyme PETase (polyethylene terephthalate [PET]), with potential application in plastic recycling, is stabilized at elevated temperature through complexation with random copolymers. We demonstrate this through simulations and experiments on different types of substrates. Our simulations also provide strategies for designing more enzymatically active complexes by altering polymer composition and enzyme charge distribution.
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Affiliation(s)
- Curt Waltmann
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
| | - Carolyn E. Mills
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
| | - Jeremy Wang
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
| | - Baofu Qiao
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
| | - John M. Torkelson
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
| | - Danielle Tullman-Ercek
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
| | - Monica Olvera de la Cruz
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
- Department of Chemistry, Northwestern University, Evanston, IL 60208
- Department of Physics and Astronomy, Northwestern University, Evanston, IL 60208
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Kato J, Gotoh T, Nakashimada Y. Removal of Acetic Acid from Bacterial Culture Media by Adsorption onto a Two-Component Composite Polymer Gel. Gels 2022; 8:gels8030154. [PMID: 35323267 PMCID: PMC8950367 DOI: 10.3390/gels8030154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 02/22/2022] [Accepted: 02/28/2022] [Indexed: 11/17/2022] Open
Abstract
Organic acids, including acetic acid, are the metabolic products of many microorganisms. Acetic acid is a target product useful in the fermentation process. However, acetic acid has an inhibitory effect on microorganisms and limits fermentation. Thus, it would be beneficial to recover the acid from the culture medium. However, conventional recovery processes are expensive and environmentally unfriendly. Here, we report the use of a two-component hydrogel to adsorb dissociated and undissociated acetic acid from the culture medium. The Langmuir model revealed the maximum adsorption amount to be 44.8 mg acetic acid/g of dry gel at neutral pH value. The adsorption capacity was similar to that of an ion-exchange resin. In addition, the hydrogel maintained its adsorption capability in a culture medium comprising complex components, whereas the ion-exchange did not adsorb in this medium. The adsorbed acetic acid was readily desorbed using a solution containing a high salt concentration. Thus, the recovered acetic acid can be utilized for subsequent processes, and the gel-treated fermentation broth can be reused for the next round of fermentation. Use of this hydrogel may prove to be a more sustainable downstream process to recover biosynthesized acetic acid.
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Affiliation(s)
- Junya Kato
- Graduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashihiroshima 739-8530, Hiroshima, Japan;
| | - Takehiko Gotoh
- Graduate School of Advanced Science and Engineering, Hiroshima University, 1-4-1 Kagamiyama, Higashihiroshima 739-8527, Hiroshima, Japan
- Correspondence: (T.G.); (Y.N.)
| | - Yutaka Nakashimada
- Graduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashihiroshima 739-8530, Hiroshima, Japan;
- Correspondence: (T.G.); (Y.N.)
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Liu S, Narancic T, Davis C, O'Connor KE. CRISPR-Cas9 Editing of the Synthesis of Biodegradable Polyesters Polyhydroxyalkanaotes (PHA) in Pseudomonas putida KT2440. Methods Mol Biol 2022; 2397:341-358. [PMID: 34813072 DOI: 10.1007/978-1-0716-1826-4_17] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Genome editing technologies allow us to study the metabolic pathways of cells and the contribution of each associated enzyme to various processes, including polyhydroxyalkanoate (PHA) synthesis. These biodegradable polyesters accumulated by a range of bacteria are thermoplastic, elastomeric, and biodegradable, thus have great applicative potential. However, several challenges are associated with PHA production, mainly the cost and shortcomings in their physical properties. The advances in synthetic biology and metabolic engineering provide us with a tool to improve the production process and allow the synthesis of tailor-made PHAs. CRISPR/Cas9 technology represents a new generation of genome editing tools capable of application in nearly all organisms. However, off-target activity is a crucial issue for CRISPR/Cas9 technology, as it can cause genomic instability and disruption of functions of otherwise normal genes. Here, we provide a detailed protocol for scarless deletion of the genes implicated in PHA metabolism of Pseudomonas putida KT2440 using modified CRISPR/Cas9 systems and methodology.
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Affiliation(s)
- Si Liu
- UCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin, Ireland
- BiOrbic Bioeconomy Research Centre, University College Dublin, Belfield, Dublin, Ireland
| | - Tanja Narancic
- UCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin, Ireland
- BiOrbic Bioeconomy Research Centre, University College Dublin, Belfield, Dublin, Ireland
| | - Chris Davis
- UCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin, Ireland
- BiOrbic Bioeconomy Research Centre, University College Dublin, Belfield, Dublin, Ireland
| | - Kevin E O'Connor
- UCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin, Ireland.
- BiOrbic Bioeconomy Research Centre, University College Dublin, Belfield, Dublin, Ireland.
- School of Biomolecular and Biomedical Sciences and BiOrbic SFI Bioeconomy Research Centre, O'Brien Centre for Science, University College Dublin, Belfield, Dublin, Ireland.
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Ortega F, Versino F, López OV, García MA. Biobased composites from agro-industrial wastes and by-products. EMERGENT MATERIALS 2022; 5:873-921. [PMID: 34849454 PMCID: PMC8614084 DOI: 10.1007/s42247-021-00319-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 10/14/2021] [Indexed: 05/09/2023]
Abstract
The greater awareness of non-renewable natural resources preservation needs has led to the development of more ecological high-performance polymeric materials with new functionalities. In this regard, biobased composites are considered interesting options, especially those obtained from agro-industrial wastes and by-products. These are low-cost raw materials derived from renewable sources, which are mostly biodegradable and would otherwise typically be discarded. In this review, recent and innovative academic studies on composites obtained from biopolymers, natural fillers and active agents, as well as green-synthesized nanoparticles are presented. An in-depth discussion of biobased composites structures, properties, manufacture, and life-cycle assessment (LCA) is provided along with a wide up-to-date overview of the most recent works in the field with appropriate references. Potential uses of biobased composites from agri-food residues such as active and intelligent food packaging, agricultural inputs, tissue engineering, among others are described, considering that the specific characteristics of these materials should match the proposed application.
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Affiliation(s)
- Florencia Ortega
- Centro de Investigación y Desarrollo en Criotecnología de Alimentos (CIDCA), UNLP-CONICET-CICPBA, 47 y 116 (1900), La Plata, Argentina
| | - Florencia Versino
- Centro de Investigación y Desarrollo en Criotecnología de Alimentos (CIDCA), UNLP-CONICET-CICPBA, 47 y 116 (1900), La Plata, Argentina
| | - Olivia Valeria López
- Planta Piloto de Ingeniería Química (PLAPIQUI), UNS-CONICET, Camino La Carrindanga km.7 (8000), Bahía Blanca, Argentina
| | - María Alejandra García
- Centro de Investigación y Desarrollo en Criotecnología de Alimentos (CIDCA), UNLP-CONICET-CICPBA, 47 y 116 (1900), La Plata, Argentina
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46
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Tiso T, Winter B, Wei R, Hee J, de Witt J, Wierckx N, Quicker P, Bornscheuer UT, Bardow A, Nogales J, Blank LM. The metabolic potential of plastics as biotechnological carbon sources - Review and targets for the future. Metab Eng 2021; 71:77-98. [PMID: 34952231 DOI: 10.1016/j.ymben.2021.12.006] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/15/2021] [Accepted: 12/15/2021] [Indexed: 12/19/2022]
Abstract
The plastic crisis requires drastic measures, especially for the plastics' end-of-life. Mixed plastic fractions are currently difficult to recycle, but microbial metabolism might open new pathways. With new technologies for degradation of plastics to oligo- and monomers, these carbon sources can be used in biotechnology for the upcycling of plastic waste to valuable products, such as bioplastics and biosurfactants. We briefly summarize well-known monomer degradation pathways and computed their theoretical yields for industrially interesting products. With this information in hand, we calculated replacement scenarios of existing fossil-based synthesis routes for the same products. Thereby, we highlight fossil-based products for which plastic monomers might be attractive alternative carbon sources. Notably, not the highest yield of product on substrate of the biochemical route, but rather the (in-)efficiency of the petrochemical routes (i.e., carbon, energy use) determines the potential of biochemical plastic upcycling. Our results might serve as a guide for future metabolic engineering efforts towards a sustainable plastic economy.
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Affiliation(s)
- Till Tiso
- Institute of Applied Microbiology - iAMB, Aachen Biology and Biotechnology - ABBt, RWTH Aachen University, Aachen, Germany
| | - Benedikt Winter
- Energy & Process Systems Engineering, ETH Zurich, Zurich, Switzerland; Institute of Technical Thermodynamics, RWTH Aachen University, Germany
| | - Ren Wei
- Department of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, Germany
| | - Johann Hee
- Unit of Technology of Fuels, RWTH Aachen University, Aachen, Germany
| | - Jan de Witt
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany
| | - Nick Wierckx
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany
| | - Peter Quicker
- Unit of Technology of Fuels, RWTH Aachen University, Aachen, Germany
| | - Uwe T Bornscheuer
- Department of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, Germany
| | - André Bardow
- Energy & Process Systems Engineering, ETH Zurich, Zurich, Switzerland; Institute of Technical Thermodynamics, RWTH Aachen University, Germany; Institute of Energy and Climate Research (IEK 10), Research Center Jülich GmbH, Germany
| | - Juan Nogales
- Department of Systems Biology, Centro Nacional de Biotecnología, CSIC, Madrid, Spain; Interdisciplinary Platform for Sustainable Plastics Towards a Circular Economy-Spanish National Research Council (SusPlast-CSIC), Madrid, Spain
| | - Lars M Blank
- Institute of Applied Microbiology - iAMB, Aachen Biology and Biotechnology - ABBt, RWTH Aachen University, Aachen, Germany.
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47
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Narancic T, Salvador M, Hughes GM, Beagan N, Abdulmutalib U, Kenny ST, Wu H, Saccomanno M, Um J, O'Connor KE, Jiménez JI. Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates. Microb Biotechnol 2021; 14:2463-2480. [PMID: 33404203 PMCID: PMC8601165 DOI: 10.1111/1751-7915.13712] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 11/02/2020] [Accepted: 11/03/2020] [Indexed: 01/26/2023] Open
Abstract
The throwaway culture related to the single-use materials such as polyethylene terephthalate (PET) has created a major environmental concern. Recycling of PET waste into biodegradable plastic polyhydroxyalkanoate (PHA) creates an opportunity to improve resource efficiency and contribute to a circular economy. We sequenced the genome of Pseudomonas umsongensis GO16 previously shown to convert PET-derived terephthalic acid (TA) into PHA and performed an in-depth genome analysis. GO16 can degrade a range of aromatic substrates in addition to TA, due to the presence of a catabolic plasmid pENK22. The genetic complement required for the degradation of TA via protocatechuate was identified and its functionality was confirmed by transferring the tph operon into Pseudomonas putida KT2440, which is unable to utilize TA naturally. We also identified the genes involved in ethylene glycol (EG) metabolism, the second PET monomer, and validated the capacity of GO16 to use EG as a sole source of carbon and energy. Moreover, GO16 possesses genes for the synthesis of both medium and short chain length PHA and we have demonstrated the capacity of the strain to convert mixed TA and EG into PHA. The metabolic versatility of GO16 highlights the potential of this organism for biotransformations using PET waste as a feedstock.
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Affiliation(s)
- Tanja Narancic
- BiOrbic – Bioeconomy Research CentreUniversity College DublinBelfieldDublin4Ireland
- UCD Earth Institute and School of Biomolecular and Biomedical ScienceUniversity College DublinBelfieldDublin4Ireland
| | - Manuel Salvador
- Faculty of Health and Medical SciencesUniversity of SurreyGuildfordGU2 7XHUK
| | - Graham M. Hughes
- UCD Earth Institute and School of Biology and Environmental ScienceUniversity College DublinBelfieldDublin4Ireland
| | - Niall Beagan
- BiOrbic – Bioeconomy Research CentreUniversity College DublinBelfieldDublin4Ireland
| | - Umar Abdulmutalib
- Faculty of Health and Medical SciencesUniversity of SurreyGuildfordGU2 7XHUK
| | - Shane T. Kenny
- Bioplastech Ltd.NovaUCD, Belfield Innovation ParkUniversity College DublinBelfieldDublin4Ireland
| | - Huihai Wu
- Faculty of Health and Medical SciencesUniversity of SurreyGuildfordGU2 7XHUK
| | - Marta Saccomanno
- BiOrbic – Bioeconomy Research CentreUniversity College DublinBelfieldDublin4Ireland
| | - Jounghyun Um
- UCD Earth Institute and School of Biomolecular and Biomedical ScienceUniversity College DublinBelfieldDublin4Ireland
| | - Kevin E. O'Connor
- BiOrbic – Bioeconomy Research CentreUniversity College DublinBelfieldDublin4Ireland
- UCD Earth Institute and School of Biomolecular and Biomedical ScienceUniversity College DublinBelfieldDublin4Ireland
| | - José I. Jiménez
- Faculty of Health and Medical SciencesUniversity of SurreyGuildfordGU2 7XHUK
- Department of Life SciencesImperial College LondonLondonSW7 2AZUK
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48
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Xu A, Zhang X, Wang T, Xin F, Ma LZ, Zhou J, Dong W, Jiang M. Rugose small colony variant and its hyper-biofilm in Pseudomonas aeruginosa: Adaption, evolution, and biotechnological potential. Biotechnol Adv 2021; 53:107862. [PMID: 34718136 DOI: 10.1016/j.biotechadv.2021.107862] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Revised: 10/23/2021] [Accepted: 10/24/2021] [Indexed: 12/16/2022]
Abstract
One of the hallmarks of the environmental bacterium Pseudomonas aeruginosa is its excellent ecological flexibility, which can thrive in diverse ecological niches. In different ecosystems, P. aeruginosa may use different strategies to survive, such as forming biofilms in crude oil environment, converting to mucoid phenotype in the cystic fibrosis (CF) lung, or becoming persisters when treated with antibiotics. Rugose small colony variants (RSCVs) are the adaptive mutants of P. aeruginosa, which can be frequently isolated from chronic infections. During the past years, there has been a renewed interest in using P. aeruginosa as a model organism to investigate the RSCVs formation, persistence and pathogenesis, as RSCVs represent a hyper-biofilm formation, high adaptability, high-tolerance sub-population in biofilms. This review will briefly summarize recent advances regarding the phenotypic, genetic and host interaction associated with RSCVs, with an emphasis on P. aeruginosa. Meanwhile, some non-pathogenic bacteria such as Pseudomonas fluorescence, Pseudomonas putida and Bacillus subtilis will be also included. Remarkable emphasis is given on intrinsic functions of such hyper-biofilm formation characteristic as well as its potential applications in several biocatalytic transformations including wastewater treatment, microbial fermentation, and plastic degradation. Hopefully, this review will attract the interest of researchers in various fields and shape future research focused not only on evolutionary biology but also on biotechnological applications related to RSCVs.
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Affiliation(s)
- Anming Xu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China.
| | - Xiaoxiao Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China
| | - Tong Wang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China
| | - Fengxue Xin
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China
| | - Luyan Z Ma
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Jie Zhou
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China.
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China.
| | - Min Jiang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing 211800, China
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Upcycling Biodegradable PVA/Starch Film to a Bacterial Biopigment and Biopolymer. Polymers (Basel) 2021; 13:polym13213692. [PMID: 34771249 PMCID: PMC8588134 DOI: 10.3390/polym13213692] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 10/15/2021] [Accepted: 10/21/2021] [Indexed: 12/01/2022] Open
Abstract
Meeting the challenge of circularity for plastics requires amenability to repurposing post-use, as equivalent or upcycled products. In a compelling advancement, complete circularity for a biodegradable polyvinyl alcohol/thermoplastic starch (PVA/TPS) food packaging film was demonstrated by bioconversion to high-market-value biopigments and polyhydroxybutyrate (PHB) polyesters. The PVA/TPS film mechanical properties (tensile strength (σu), 22.2 ± 4.3 MPa; strain at break (εu), 325 ± 73%; and Young’s modulus (E), 53–250 MPa) compared closely with low-density polyethylene (LDPE) grades used for food packaging. Strong solubility of the PVA/TPS film in water was a pertinent feature, facilitating suitability as a carbon source for bioprocessing and microbial degradation. Biodegradability of the film with greater than 50% weight loss occurred within 30 days of incubation at 37 °C in a model compost. Up to 22% of the PVA/TPS film substrate conversion to biomass was achieved using three bacterial strains, Ralstonia eutropha H16 (Cupriavidus necator ATCC 17699), Streptomyces sp. JS520, and Bacillus subtilis ATCC6633. For the first time, production of the valuable biopigment (undecylprodigiosin) by Streptomyces sp. JS520 of 5.3 mg/mL and the production of PHB biopolymer at 7.8% of cell dry weight by Ralstonia eutropha H16 from this substrate were reported. This low-energy, low-carbon post-use PVA/TPS film upcycling model approach to plastic circularity demonstrates marked progress in the quest for sustainable and circular plastic solutions.
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50
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Roy PS, Garnier G, Allais F, Saito K. Strategic Approach Towards Plastic Waste Valorization: Challenges and Promising Chemical Upcycling Possibilities. CHEMSUSCHEM 2021; 14:4007-4027. [PMID: 34132056 DOI: 10.1002/cssc.202100904] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 06/13/2021] [Indexed: 06/12/2023]
Abstract
Plastic waste, which is one of the major sources of pollution in the landfills and oceans, has raised global concern, primarily due to the huge production rate, high durability, and the lack of utilization of the available waste management techniques. Recycling methods are preferable to reduce the impact of plastic pollution to some extent. However, most of the recycling techniques are associated with different drawbacks, high cost and downgrading of product quality being among the notable ones. The sustainable option here is to upcycle the plastic waste to create high-value materials to compensate for the cost of production. Several upcycling techniques are constantly being investigated and explored, which is currently the only economical option to resolve the plastic waste issue. This Review provides a comprehensive insight on the promising chemical routes available for upcycling of the most widely used plastic and mixed plastic wastes. The challenges inherent to these processes, the recent advances, and the significant role of the science and research community in resolving these issues are further emphasized.
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Affiliation(s)
- Pallabi Sinha Roy
- School of Chemistry, Monash University, Clayton, 3800, VIC, Australia
- BioPRIA, Department of Chemical Engineering, Monash University, Clayton, 3800, VIC, Australia
| | - Gil Garnier
- BioPRIA, Department of Chemical Engineering, Monash University, Clayton, 3800, VIC, Australia
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, 51110, Pomacle, France
| | - Florent Allais
- BioPRIA, Department of Chemical Engineering, Monash University, Clayton, 3800, VIC, Australia
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, 51110, Pomacle, France
| | - Kei Saito
- School of Chemistry, Monash University, Clayton, 3800, VIC, Australia
- BioPRIA, Department of Chemical Engineering, Monash University, Clayton, 3800, VIC, Australia
- Graduate School of Advanced Integrated Studies in Human Survivability, Kyoto University, Higashi-Ichijo-Kan, Yoshida-nakaadachicho 1, Sakyo-ku, Kyoto, 606-8306, Japan
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