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Barranger A, Klopp C, Le Bot B, Saramito G, Dupont L, Llopis S, Wiegand C, Binet F. Insights into the molecular mechanisms of pesticide tolerance in the Aporrectodea caliginosa earthworm. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 319:120945. [PMID: 36572272 DOI: 10.1016/j.envpol.2022.120945] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 12/09/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
Abstract
Diffuse pollution of the environment by pesticides has become a major soil threat to non-target organisms, such as earthworms for which declines have been reported. However some endogeic species are still abundant and persist in intensively cultivated fields, suggesting they become tolerant to long-term anthropogenic pressure. We thus considered the working hypothesis that populations of Aporrectodea caliginosa earthworms from conventionally managed fields developed a tolerance to pesticides compared with those from organically managed fields. To investigate this hypothesis, we studied earthworm populations of the same genetic lineage from soils that were either lowly or highly contaminated by pesticides to detect any constitutive expression of differentially expressed molecular pathways between these populations. Earthworm populations were then experimentally exposed to a fungicide-epoxiconazole-in the laboratory to identify different molecular responses when newly exposed to a pesticide. State-of-the-art omics technology (RNA sequencing) and bioinformatics were used to characterize molecular mechanisms of tolerance in a non-targeted way. Additional physiological traits (respirometry, growth, bioaccumulation) were monitored to assess tolerance at higher levels of biological organization. In the present study, we generated the de novo assembly transcriptome of A. caliginosa consisting of 64,556 contigs with N50 = 2862 pb. In total, 43,569 Gene Ontology terms were identified for 21,593 annotated sequences under the three main ontologies (biological processes, cellular components and molecular functions). Overall, we revealed that two same lineage populations of A. caliginosa earthworms, inhabiting similar pedo-climatic environment, have distinct gene expression pathways after they long-lived in differently managed agricultural soils with a contrasted pesticide exposure history for more than 22 years. The main difference was observed regarding metabolism, with upregulated pathways linked to proteolytic activities and the mitochondrial respiratory chain in the highly exposed population. This study improves our understanding of the long-term impact of chronic exposure of soil engineers to pesticide residues.
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Affiliation(s)
- Audrey Barranger
- UMR CNRS ECOBIO 6553, Université de Rennes1, Campus de Beaulieu, 263 Avenue du Général Leclerc, 35042, Rennes, Cedex, France.
| | - Christophe Klopp
- UR INRAE 875 MIAT, GENOTOUL, 24 Chemin de Borde Rouge, 31326, Castanet-Tolosan, Cedex, France
| | - Barbara Le Bot
- Université de Rennes, EHESP, Inserm, Irset (Institut de Recherche en Santé, Environnement et Travail) - UMR_S 1085, F 35000, Rennes, France
| | - Gaëlle Saramito
- Université de Rennes, EHESP, Inserm, Irset (Institut de Recherche en Santé, Environnement et Travail) - UMR_S 1085, F 35000, Rennes, France
| | - Lise Dupont
- Université Paris Est Créteil (UPEC), Sorbonne Université, CNRS, INRAE, IRD, Institut d'Ecologie et des Sciences de l'Environnement de Paris, 94010, Créteil, Cedex, France
| | - Stéphanie Llopis
- UMR CNRS ECOBIO 6553, Université de Rennes1, Campus de Beaulieu, 263 Avenue du Général Leclerc, 35042, Rennes, Cedex, France
| | - Claudia Wiegand
- UMR CNRS ECOBIO 6553, Université de Rennes1, Campus de Beaulieu, 263 Avenue du Général Leclerc, 35042, Rennes, Cedex, France
| | - Françoise Binet
- UMR CNRS ECOBIO 6553, Université de Rennes1, Campus de Beaulieu, 263 Avenue du Général Leclerc, 35042, Rennes, Cedex, France
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2
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Šrut M. Environmental Epigenetics in Soil Ecosystems: Earthworms as Model Organisms. TOXICS 2022; 10:toxics10070406. [PMID: 35878310 PMCID: PMC9323174 DOI: 10.3390/toxics10070406] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 07/11/2022] [Accepted: 07/18/2022] [Indexed: 11/25/2022]
Abstract
One of the major emerging concerns within ecotoxicology is the effect of environmental pollutants on epigenetic changes, including DNA methylation, histone modifications, and non-coding RNAs. Epigenetic mechanisms regulate gene expression, meaning that the alterations of epigenetic marks can induce long-term physiological effects that can even be inherited across generations. Many invertebrate species have been used as models in environmental epigenetics, with a special focus on DNA methylation changes caused by environmental perturbations (e.g., pollution). Among soil organisms, earthworms are considered the most relevant sentinel organisms for anthropogenic stress assessment and are widely used as standard models in ecotoxicological testing of soil toxicity. In the last decade, several research groups have focused on assessing the impact of environmental stress on earthworm epigenetic mechanisms and tried to link these mechanisms to the physiological effects. The aim of this review is to give an overview and to critically examine the available literature covering this topic. The high level of earthworm genome methylation for an invertebrate species, responsiveness of epigenome to environmental stimuli, availability of molecular resources, and the possibility to study epigenetic inheritance make earthworms adequate models in environmental epigenomics. However, there are still many knowledge gaps that need to be filled in, before we can fully explore earthworms as models in this field. These include detailed characterization of the methylome using next-generation sequencing tools, exploration of multigenerational and transgenerational effects of pollutants, and information about other epigenetic mechanisms apart from DNA methylation. Moreover, the connection between epigenetic effects and phenotype has to be further explored.
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Affiliation(s)
- Maja Šrut
- Department of Zoology, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
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Roy J, Kumar Ojha P, Carnesecchi E, Lombardo A, Roy K, Benfenati E. First report on a classification-based QSAR model for chemical toxicity to earthworm. JOURNAL OF HAZARDOUS MATERIALS 2020; 386:121660. [PMID: 31784141 DOI: 10.1016/j.jhazmat.2019.121660] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 11/06/2019] [Accepted: 11/09/2019] [Indexed: 06/10/2023]
Abstract
As the use of the pesticides has increased extensively in the farming fields to have a better agricultural production, the negative impacts of such use have also increased exponentially. Hence, the toxic effects of pesticides along with the targeted organisms affect the non-targeted terrestrial organisms such as earthworm. Therefore, in the present work, we have developed a classification-based quantitative structure-activity relationship (QSAR) model using linear discriminant analysis (LDA) to capture the specific information of pesticides / diverse chemicals in order to determine the structural information responsible for toxicity manifestation towards the non-targeted organism, i.e., earthworm (Eisenia foetida). After variable selection, the model was developed using 2D descriptors only and was subjected to rigorous statistical validation. The best discriminant model obtained with 8 descriptors showed appreciable Wilks' λ value of 0.490, F (Fischer's statistics) value of 14.03, χ2 value of 79.098, canonical regression coefficient (R) value of 0.714 and ρ value of 14.63. The sensitivity, specificity, accuracy, precision and F-measure values of the training set are 90.00, 80.52, 83.76, 70.59 and 79.12 respectively whereas for the test set, these are 58.82, 79.31, 71.74, 62.50 and 60.61 respectively. The insights obtained from the LDA model suggested that lipophilicity, electronrichness, and lower degree of branching of the organic compounds are responsible for earthworm toxicity through various mechanisms. On the other hand, polar and bulky diverse chemicals do not have such toxic effects on earthworm. Hence, this model can be an effective tool to tailor molecular structures of the existing pesticides to develop novel compounds or pesticides which would be less toxic to the non-targeted organisms, specifically earthworm.
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Affiliation(s)
- Joyita Roy
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India
| | - Probir Kumar Ojha
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India
| | - Edoardo Carnesecchi
- Institute for Risk Assessment Sciences, Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Laboratory of Environmental Chemistry and Toxicology, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy
| | - Anna Lombardo
- Laboratory of Environmental Chemistry and Toxicology, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy
| | - Kunal Roy
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India.
| | - Emilio Benfenati
- Laboratory of Environmental Chemistry and Toxicology, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy.
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Ghosh S, Ojha PK, Carnesecchi E, Lombardo A, Roy K, Benfenati E. Exploring QSAR modeling of toxicity of chemicals on earthworm. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 190:110067. [PMID: 31855788 DOI: 10.1016/j.ecoenv.2019.110067] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 12/04/2019] [Accepted: 12/07/2019] [Indexed: 06/10/2023]
Abstract
Earthworm provides sustainability towards the agroecosystem which can be degraded day by day by the extensive use of pesticides (e.g., fungicides, insecticides and herbicides). The present study attempts to develop a predictive quantitative structure-activity relationship (QSAR) model for toxicity of pesticides to earthworm in order to give a suitable guidance for designing new analogues with lower toxicity by exploring the important chemical features which are required to develop safer alternatives. The QSAR model was developed by using the negative logarithm of lethal concentration (pLC50) values of pesticides towards earthworm. We have used various 2D descriptors along with extended topochemical atom (ETA) indices as independent variables for the development of the model. The developed partial least squares (PLS) model was subjected to statistical validation tests proving that the model is statistically reliable and robust (R2 = 0.765, Q2 = 0.614, Q2F1 = 0.734, Q2F2 = 0.713). The contributing descriptors in the model suggested that the pesticides may affect the earthworm nucleic acid through various physicochemical interactions including hydrophobicity, hydrogen bonding, electron donor acceptor complex formation, π-π stacking interaction and charge transfer complex formation.
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Affiliation(s)
- Sulekha Ghosh
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, 700 032, India
| | - Probir Kumar Ojha
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, 700 032, India
| | - Edoardo Carnesecchi
- Institute for Risk Assessment Sciences, Utrecht University, PO Box 80177, 3508, TD, Utrecht, the Netherlands; Laboratory of Environmental Chemistry and Toxicology, Department of Environmental Health, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy
| | - Anna Lombardo
- Laboratory of Environmental Chemistry and Toxicology, Department of Environmental Health, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy
| | - Kunal Roy
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, 700 032, India.
| | - Emilio Benfenati
- Laboratory of Environmental Chemistry and Toxicology, Department of Environmental Health, Istituto Di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri, 2, 20156, Milano, Italy.
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5
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Bart S, Pelosi C, Nélieu S, Lamy I, Péry ARR. An energy-based model to analyze growth data of earthworms exposed to two fungicides. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:741-750. [PMID: 31811607 DOI: 10.1007/s11356-019-06985-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 11/06/2019] [Indexed: 05/14/2023]
Abstract
The pesticide risk assessment for earthworms is currently performed using standardized tests, the model species Eisenia fetida, and the analyses of the data obtained are performed with ad hoc statistical tools. We assessed the impact of two fungicides on the entire growth pattern of the earthworm species Aporrectodea caliginosa, which is highly representative of agricultural fields. Individuals of three different ages (from hatching to 56 days old) were exposed to Cuprafor micro® (copper oxychloride) and Swing® Gold (dimoxystrobin and epoxiconazole). Data were analyzed with an energy-based toxicodynamic model coupled with a toxicokinetic model. The copper fungicide caused a drastic growth inhibition once the no effect concentration (NEC), estimated at 65 mg kg-1 of copper, was exceeded. The Swing® Gold negatively affected the growth with NEC values estimated at 0.387 mg kg-1 and 0.128 mg kg-1 for the dimoxystrobin and the epoxiconazole in this fungicide formulation, respectively. The time-profile of the effects on A. caliginosa individuals was fully accounted for by the model, whatever their age of exposure. Furthermore, toxicity data analyses, supported by measurements of fungicide concentrations in earthworm at the end of the experiment, allowed bettering understanding of the mechanisms of action of the fungicides towards earthworm growth.
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Affiliation(s)
- Sylvain Bart
- UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026, Versailles, France.
| | - Céline Pelosi
- UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026, Versailles, France
- UMR EMMAH, INRA, Université d'Avignon et des Pays de Vaucluse, 84914, Avignon, France
| | - Sylvie Nélieu
- UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026, Versailles, France
| | - Isabelle Lamy
- UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026, Versailles, France
| | - Alexandre R R Péry
- UMR ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, 78026, Versailles, France
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Mincarelli L, Tiano L, Craft J, Marcheggiani F, Vischetti C. Evaluation of gene expression of different molecular biomarkers of stress response as an effect of copper exposure on the earthworm EIsenia Andrei. ECOTOXICOLOGY (LONDON, ENGLAND) 2019; 28:938-948. [PMID: 31402411 DOI: 10.1007/s10646-019-02093-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 07/29/2019] [Indexed: 06/10/2023]
Abstract
The paper reports the results of a laboratory test on the bioaccumulation and toxicological effects of sub-lethal soil concentration of copper, a widely used fungicide in organic farming, on DNA damage, a critical marker increasingly used in ecotoxicology in the earthworm Eisenia andrei. In the same experimental setting we evaluated gene expression of classical biomarker of stress induced by xenobiotic. [Heat Shock Protein 70 (HSP70) and Metallothionein (MET)], as well as genes coding for enzymes involved in detoxification of reactive oxygen species [Superoxide dismutase (SOD) and catalase (CAT)]. Additionally, expression of genes involved in the immune response were investigated: a Toll-like receptor (TLR), a receptor with cytolytic activity named Cytolytic Factor (CCF) and two antimicrobial peptides, fetidin (FET) and lysenin (LYS). Results showed significant time-dependent bioaccumulation of Cu and DNA damage at concentrations remarkably lower than those found in most agricultural soils worldwide. MET was increased as was FET and TLR. The present work gives new insights into the mechanisms of sub-lethal toxicity of copper as an environmental pollutant and in the identification of novel sub-lethal biomarkers of cellular response to the stressor such as immune response genes.
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Affiliation(s)
| | - Luca Tiano
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy.
| | - John Craft
- Biological & Biomedical Science Department, School of Health and Life Science, Glasgow Caledonian University, Glasgow, UK
| | - Fabio Marcheggiani
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - Costantino Vischetti
- Environmental, Food and Agricultural Sciences Department, Polytechnic University of Marche, Ancona, Italy
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Bourdineaud JP, Štambuk A, Šrut M, Radić Brkanac S, Ivanković D, Lisjak D, Sauerborn Klobučar R, Dragun Z, Bačić N, Klobučar GIV. Gold and silver nanoparticles effects to the earthworm Eisenia fetida - the importance of tissue over soil concentrations. Drug Chem Toxicol 2019; 44:12-29. [PMID: 30945571 DOI: 10.1080/01480545.2019.1567757] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
To address and to compare the respective impact of gold and silver nanoparticles (Au and Ag NPs) in soil invertebrate, the earthworm Eisenia fetida was exposed to soil containing 2, 10, and 50 mg/kg of Au and Ag in both nanoparticulate and ionic forms for 10 days. Both metal NPs were 2-15 times less bioavailable than their ionic forms, and displayed similar transfer coefficients from soil to earthworm tissues. Both metal NPs triggered the onset of an oxidative stress as illustrated by increased glutathione S-transferase levels, decreased catalase levels, and increased malondialdehyde concentrations. Protein carbonylation distinguished the nanoparticular from the ionic forms as its increase was observed only after exposure to the highest concentration of both metal NPs. Au and Ag NPs triggered DNA modifications even at the lowest concentration, and both repressed the expression of genes involved in the general defense and stress response at high concentrations as did their ionic counterparts. Despite the fact that both metal NPs were less bioavailable than their ionic forms, at equivalent concentrations accumulated within earthworms tissues they exerted equal or higher toxic potential than their ionic counterparts.Capsule: At equivalent concentrations accumulated within earthworm tissues Au and Ag NPs exert equal or higher toxic potential than their ionic forms.
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Affiliation(s)
- Jean-Paul Bourdineaud
- CNRS, Laboratory of Fundamental Microbiology and Pathogenicity, European Institute of Chemistry and Biology, University of Bordeaux, Bordeaux, France
| | - Anamaria Štambuk
- Department of Biology, Faculty of Science, Division of Zoology, University of Zagreb, Zagreb, Croatia
| | - Maja Šrut
- Department of Biology, Faculty of Science, Division of Zoology, University of Zagreb, Zagreb, Croatia
| | - Sandra Radić Brkanac
- Department of Biology, Faculty of Science, Division of Botany, University of Zagreb, Zagreb, Croatia
| | - Dušica Ivanković
- Department for Marine and Environmental Research, Ruđer Bošković Institute, Zagreb, Croatia
| | - Damir Lisjak
- Department of Biology, Faculty of Science, Division of Zoology, University of Zagreb, Zagreb, Croatia
| | | | - Zrinka Dragun
- Department for Marine and Environmental Research, Ruđer Bošković Institute, Zagreb, Croatia
| | - Niko Bačić
- Department for Marine and Environmental Research, Ruđer Bošković Institute, Zagreb, Croatia
| | - Göran I V Klobučar
- Department of Biology, Faculty of Science, Division of Zoology, University of Zagreb, Zagreb, Croatia
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8
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Gajski G, Žegura B, Ladeira C, Pourrut B, Del Bo’ C, Novak M, Sramkova M, Milić M, Gutzkow KB, Costa S, Dusinska M, Brunborg G, Collins A. The comet assay in animal models: From bugs to whales – (Part 1 Invertebrates). MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH 2019; 779:82-113. [DOI: 10.1016/j.mrrev.2019.02.003] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 02/07/2019] [Accepted: 02/09/2019] [Indexed: 01/09/2023]
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Bart S, Amossé J, Lowe CN, Mougin C, Péry ARR, Pelosi C. Aporrectodea caliginosa, a relevant earthworm species for a posteriori pesticide risk assessment: current knowledge and recommendations for culture and experimental design. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:33867-33881. [PMID: 29931645 PMCID: PMC6245014 DOI: 10.1007/s11356-018-2579-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Accepted: 06/18/2018] [Indexed: 05/27/2023]
Abstract
Ecotoxicological tests with earthworms are widely used and are mandatory for the risk assessment of pesticides prior to registration and commercial use. The current model species for standardized tests is Eisenia fetida or Eisenia andrei. However, these species are absent from agricultural soils and often less sensitive to pesticides than other earthworm species found in mineral soils. To move towards a better assessment of pesticide effects on non-target organisms, there is a need to perform a posteriori tests using relevant species. The endogeic species Aporrectodea caliginosa (Savigny, 1826) is representative of cultivated fields in temperate regions and is suggested as a relevant model test species. After providing information on its taxonomy, biology, and ecology, we reviewed current knowledge concerning its sensitivity towards pesticides. Moreover, we highlighted research gaps and promising perspectives. Finally, advice and recommendations are given for the establishment of laboratory cultures and experiments using this soil-dwelling earthworm species.
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Affiliation(s)
- Sylvain Bart
- UMR1402 ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, Bâtiment 6 RD 10, 78026 Versailles Cedex, France
| | - Joël Amossé
- UMR1402 ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, Bâtiment 6 RD 10, 78026 Versailles Cedex, France
| | - Christopher N. Lowe
- School of Forensic and Applied Sciences, University of Central Lancashire, Preston, PR1 2HE UK
| | - Christian Mougin
- UMR1402 ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, Bâtiment 6 RD 10, 78026 Versailles Cedex, France
| | - Alexandre R. R. Péry
- UMR1402 ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, Bâtiment 6 RD 10, 78026 Versailles Cedex, France
| | - Céline Pelosi
- UMR1402 ECOSYS, INRA, AgroParisTech, Université Paris-Saclay, Bâtiment 6 RD 10, 78026 Versailles Cedex, France
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Griffith CM, Williams PB, Tinoco LW, Dinges MM, Wang Y, Larive CK. 1H NMR Metabolic Profiling of Earthworm (Eisenia fetida) Coelomic Fluid, Coelomocytes, and Tissue: Identification of a New Metabolite-Malylglutamate. J Proteome Res 2017; 16:3407-3418. [PMID: 28753027 PMCID: PMC5585853 DOI: 10.1021/acs.jproteome.7b00439] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
![]()
Earthworm metabolism
is recognized
as a useful tool for monitoring environmental insults and measuring
ecotoxicity, yet extensive earthworm metabolic profiling using 1H nuclear magnetic resonance (NMR) spectroscopy has been limited
in scope. This study aims to expand the embedded metabolic material
in earthworm coelomic fluid, coelomocytes, and tissue to aid systems
toxicology research. Fifty-nine metabolites within Eisenia
fetida were identified, with 47 detected in coelomic fluid,
41 in coelomocytes, and 54 in whole-worm samples and tissue extracts.
The newly detected but known metabolites 2-aminobutyrate, nicotinurate, Nδ,Nδ,Nδ-trimethylornithine,
and trigonelline are reported along with a novel compound, malylglutamate,
elucidated using 2D NMR and high-resolution MS/MS. We postulate that
malylglutamate acts as a glutamate/malate store, chelator, and anionic
osmolyte and helps to provide electrolyte balance.
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Affiliation(s)
- Corey M Griffith
- Environmental Toxicology Graduate Program, University of California , Riverside, California 92521, United States
| | - Preston B Williams
- Department of Chemistry, University of California , Riverside, California 92521, United States
| | - Luzineide W Tinoco
- Department of Chemistry, University of California , Riverside, California 92521, United States.,Laboratório Multiusuário de Análises por Ressonância Magnética Nuclear, Instituto de Pesquisas de Produtos Naturais, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro , Rio de Janeiro, Rio de Janeiro CEP 21941-902, Brazil
| | - Meredith M Dinges
- Department of Chemistry, University of California , Riverside, California 92521, United States
| | - Yinsheng Wang
- Environmental Toxicology Graduate Program, University of California , Riverside, California 92521, United States.,Department of Chemistry, University of California , Riverside, California 92521, United States
| | - Cynthia K Larive
- Environmental Toxicology Graduate Program, University of California , Riverside, California 92521, United States.,Department of Chemistry, University of California , Riverside, California 92521, United States
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11
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Beaumelle L, Hedde M, Vandenbulcke F, Lamy I. Relationships between metal compartmentalization and biomarkers in earthworms exposed to field-contaminated soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 224:185-194. [PMID: 28284548 DOI: 10.1016/j.envpol.2017.01.078] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Revised: 01/27/2017] [Accepted: 01/30/2017] [Indexed: 06/06/2023]
Abstract
Partitioning tissue metal concentration into subcellular compartments reflecting toxicologically available pools may provide good descriptors of the toxicological effects of metals on organisms. Here we investigated the relationships between internal compartmentalization of Cd, Pb and Zn and biomarker responses in a model soil organism: the earthworm. The aim of this study was to identify metal fractions reflecting the toxic pressure in an endogeic, naturally occurring earthworm species (Aporrectodea caliginosa) exposed to realistic field-contaminated soils. After a 21 days exposure experiment to 31 field-contaminated soils, Cd, Pb and Zn concentrations in earthworms and in three subcellular fractions (cytosol, debris and granules) were quantified. Different biomarkers were measured: the expression of a metallothionein gene (mt), the activity of catalase (CAT) and of glutathione-s-transferase (GST), and the protein, lipid and glycogen reserves. Biomarkers were further combined into an integrated biomarker index (IBR). The subcellular fractionation provided better predictors of biomarkers than the total internal contents hence supporting its use when assessing toxicological bioavailability of metals to earthworms. The most soluble internal pools of metals were not always the best predictors of biomarker responses. metallothionein expression responded to increasing concentrations of Cd in the insoluble fraction (debris + granules). Protein and glycogen contents were also mainly related to Cd and Pb in the insoluble fraction. On the other hand, GST activity was better explained by Pb in the cytosolic fraction. CAT activity and lipid contents variations were not related to metal subcellular distribution. The IBR was best explained by both soluble and insoluble fractions of Pb and Cd. This study further extends the scope of mt expression as a robust and specific biomarker in an ecologically representative earthworm species exposed to field-contaminated soils. The genetic lineage of the individuals, assessed by DNA barcoding with cytochrome c oxidase subunit I, did not influence mt expression.
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Affiliation(s)
- Léa Beaumelle
- UMR ECOSYS, INRA, AgroParisTech, Université Paris Saclay, 78026, Versailles, France
| | - Mickaël Hedde
- UMR ECOSYS, INRA, AgroParisTech, Université Paris Saclay, 78026, Versailles, France
| | - Franck Vandenbulcke
- LGCgE-Lille 1, Ecologie Numérique et Ecotoxicologie, Université de Lille, 59650 Villeneuve d'Ascq, France
| | - Isabelle Lamy
- UMR ECOSYS, INRA, AgroParisTech, Université Paris Saclay, 78026, Versailles, France.
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Šrut M, Drechsel V, Höckner M. Low levels of Cd induce persisting epigenetic modifications and acclimation mechanisms in the earthworm Lumbricus terrestris. PLoS One 2017; 12:e0176047. [PMID: 28426746 PMCID: PMC5398608 DOI: 10.1371/journal.pone.0176047] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 04/04/2017] [Indexed: 12/17/2022] Open
Abstract
Toxic effects of cadmium (Cd), a common soil pollutant, are still not very well understood, particularly in regard to its epigenetic impact. Therefore, the aim of this study was to assess DNA methylation changes and their persistence in the earthworm Lumbricus terrestris upon chronic low dose Cd exposure using methylation sensitive amplification polymorphism (MSAP). Moreover, the biomarker response and fitness of the earthworms, as well as the expression of detoxification-related genes (metallothionein (MT) and phytochelatin synthase (PCS)) was evaluated. Low levels of Cd caused an increase in genome-wide DNA methylation, which remained partly modified, even after several months of recovery in unpolluted soil. Increased cellular stress seemed to decrease after two weeks of exposure whereas fitness parameters remained unaffected by Cd, probably as a result from the activation of detoxification mechanisms like the expression of MTs. Interestingly, even though the level of Cd exposure was very low, MT expression levels indicate the development of acclimation mechanisms. Taken together, this study demonstrates that acclimation, as well as epigenetic modifications can occur already in moderately polluted environments. In addition, these effects can have long-lasting impacts on key species of soil invertebrates and might persist long after the actual heavy metal challenge has passed.
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Affiliation(s)
- Maja Šrut
- Department of Zoology, Faculty of Science, University of Zagreb, Rooseveltov trg 6, Zagreb, Croatia
| | - Victoria Drechsel
- Department of Ecophysiology, Institute of Zoology, University of Innsbruck, Center for Molecular Biosciences, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Martina Höckner
- Department of Ecophysiology, Institute of Zoology, University of Innsbruck, Center for Molecular Biosciences, Technikerstr. 25, A-6020 Innsbruck, Austria
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Velki M, Ečimović S. Important Issues in Ecotoxicological Investigations Using Earthworms. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2017; 239:157-184. [PMID: 27161559 DOI: 10.1007/398_2016_4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The importance and beneficial effects of earthworms on soil structure and quality is well-established. In addition, earthworms have proved to be important model organisms for investigation of pollutant effects on soil ecosystems. In ecotoxicological investigations effects of various pollutants on earthworms were assessed. But some important issues regarding the effects of pollutants on earthworms still need to be comprehensively addressed. In this review several issues relevant to soil ecotoxicological investigations using earthworms are emphasized and guidelines that should be adopted in ecotoxicological investigations using earthworms are given. The inclusion of these guidelines in ecotoxicological studies will contribute to the better quantification of impacts of pollutants and will allow more accurate prediction of the real field effects of pollutants to earthworms.
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Affiliation(s)
- Mirna Velki
- Department of Biology, Josip Juraj Strossmayer University of Osijek, Cara Hadrijana 8/A, Osijek, 31000, Croatia.
| | - Sandra Ečimović
- Department of Biology, Josip Juraj Strossmayer University of Osijek, Cara Hadrijana 8/A, Osijek, 31000, Croatia
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14
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Ramadass K, Palanisami T, Smith E, Mayilswami S, Megharaj M, Naidu R. Earthworm Comet Assay for Assessing the Risk of Weathered Petroleum Hydrocarbon Contaminated Soils: Need to Look Further than Target Contaminants. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2016; 71:561-571. [PMID: 27722931 DOI: 10.1007/s00244-016-0318-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 09/26/2016] [Indexed: 06/06/2023]
Abstract
Earthworm toxicity assays contribute to ecological risk assessment and consequently standard toxicological endpoints, such as mortality and reproduction, are regularly estimated. These endpoints are not enough to better understand the mechanism of toxic pollutants. We employed an additional endpoint in the earthworm Eisenia andrei to estimate the pollutant-induced stress. In this study, comet assay was used as an additional endpoint to evaluate the genotoxicity of weathered hydrocarbon contaminated soils containing 520 to 1450 mg hydrocarbons kg-1 soil. Results showed that significantly higher DNA damage levels (two to sixfold higher) in earthworms exposed to hydrocarbon impacted soils. Interestingly, hydrocarbons levels in the tested soils were well below site-specific screening guideline values. In order to explore the reasons for observed toxicity, the contaminated soils were leached with rainwater and subjected to earthworm tests, including the comet assay, which showed no DNA damage. Soluble hydrocarbon fractions were not found originally in the soils and hence no hydrocarbons leached out during soil leaching. The soil leachate's Electrical Conductivity (EC) decreased from an average of 1665 ± 147 to 204 ± 20 µS cm-1. Decreased EC is due to the loss of sodium, magnesium, calcium, and sulphate. The leachate experiment demonstrated that elevated salinity might cause the toxicity and not the weathered hydrocarbons. Soil leaching removed the toxicity, which is substantiated by the comet assay and soil leachate analysis data. The implication is that earthworm comet assay can be included in future eco (geno) toxicology studies to assess accurately the risk of contaminated soils.
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Affiliation(s)
- Kavitha Ramadass
- Centre for Environmental Risk Assessment and Remediation (Changed as Future Industries Institute), University of South Australia, Environmental Sciences Building, Mawson Lakes, Adelaide, SA, 5095, Australia.
| | - Thavamani Palanisami
- Global Centre for Environmental Research (GCER), University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
- CRC for Contamination Assessment and Remediation of the Environment, University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
| | - Euan Smith
- Centre for Environmental Risk Assessment and Remediation (Changed as Future Industries Institute), University of South Australia, Environmental Sciences Building, Mawson Lakes, Adelaide, SA, 5095, Australia
| | - Srinithi Mayilswami
- Centre for Environmental Risk Assessment and Remediation (Changed as Future Industries Institute), University of South Australia, Environmental Sciences Building, Mawson Lakes, Adelaide, SA, 5095, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Research (GCER), University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
- CRC for Contamination Assessment and Remediation of the Environment, University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
| | - Ravi Naidu
- Global Centre for Environmental Research (GCER), University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
- CRC for Contamination Assessment and Remediation of the Environment, University of Newcastle, ATC Building, Callaghan, Newcastle, NSW, 2308, Australia
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15
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Molecular characterization and toxicological effects of citrate-coated silver nanoparticles in a terrestrial invertebrate, the earthworm (Eisenia fetida). Mol Cell Toxicol 2016. [DOI: 10.1007/s13273-015-0045-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/06/2022]
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16
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de Lapuente J, Lourenço J, Mendo SA, Borràs M, Martins MG, Costa PM, Pacheco M. The Comet Assay and its applications in the field of ecotoxicology: a mature tool that continues to expand its perspectives. Front Genet 2015; 6:180. [PMID: 26089833 PMCID: PMC4454841 DOI: 10.3389/fgene.2015.00180] [Citation(s) in RCA: 75] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Accepted: 04/28/2015] [Indexed: 01/20/2023] Open
Abstract
Since Singh and colleagues, in 1988, launched to the scientific community the alkaline Single Cell Gel Electrophoresis (SCGE) protocol, or Comet Assay, its uses and applications has been increasing. The thematic areas of its current employment in the evaluation of genetic toxicity are vast, either in vitro or in vivo, both in the laboratory and in the environment, terrestrial or aquatic. It has been applied to a wide range of experimental models: bacteria, fungi, cells culture, arthropods, fishes, amphibians, reptiles, mammals, and humans. This document is intended to be a comprehensive review of what has been published to date on the field of ecotoxicology, aiming at the following main aspects: (i) to show the most relevant experimental models used as bioindicators both in the laboratory and in the field. Fishes are clearly the most adopted group, reflecting their popularity as bioindicator models, as well as a primary concern over the aquatic environment health. Amphibians are among the most sensitive organisms to environmental changes, mainly due to an early aquatic-dependent development stage and a highly permeable skin. Moreover, in the terrestrial approach, earthworms, plants or mammalians are excellent organisms to be used as experimental models for genotoxic evaluation of pollutants, complex mix of pollutants and chemicals, in both laboratory and natural environment. (ii) To review the development and modifications of the protocols used and the cell types (or tissues) used. The most recent developments concern the adoption of the enzyme linked assay (digestion with lesion-specific repair endonucleases) and prediction of the ability to repair of oxidative DNA damage, which is becoming a widespread approach, albeit challenging. For practical/technical reasons, blood is the most common choice but tissues/cells like gills, sperm cells, early larval stages, coelomocytes, liver or kidney have been also used. (iii) To highlight correlations with other biomarkers. (iv) To build a constructive criticism and summarize the needs for protocol improvements for future test applications within the field of ecotoxicology. The Comet Assay is still developing and its potential is yet underexploited in experimental models, mesocosmos or natural ecosystems.
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Affiliation(s)
- Joaquín de Lapuente
- Unit of Experimental Toxicology and Ecotoxicology (UTOX-CERETOX), Barcelona Science ParkBarcelona, Spain
| | - Joana Lourenço
- Department of Biology & CESAM, University of Aveiro, Campus Universitário de Santiago. Aveiro, Portugal
| | - Sónia A. Mendo
- Department of Biology & CESAM, University of Aveiro, Campus Universitário de Santiago. Aveiro, Portugal
| | - Miquel Borràs
- Unit of Experimental Toxicology and Ecotoxicology (UTOX-CERETOX), Barcelona Science ParkBarcelona, Spain
| | - Marta G. Martins
- Departamento de Ciências e Engenharia do Ambiente, MARE – Marine and Environmental Sciences Centre, Faculdade de Ciências e Tecnologia da Universidade Nova de LisboaCaparica, Portugal
| | - Pedro M. Costa
- Departamento de Ciências e Engenharia do Ambiente, MARE – Marine and Environmental Sciences Centre, Faculdade de Ciências e Tecnologia da Universidade Nova de LisboaCaparica, Portugal
| | - Mário Pacheco
- Department of Biology & CESAM, University of Aveiro, Campus Universitário de Santiago. Aveiro, Portugal
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Effects of freshwater pollution on the genetics of zebra mussels (Dreissena polymorpha) at the molecular and population level. BIOMED RESEARCH INTERNATIONAL 2014; 2014:795481. [PMID: 24883328 PMCID: PMC4022251 DOI: 10.1155/2014/795481] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 03/22/2014] [Indexed: 12/02/2022]
Abstract
Revealing long-term effects of contaminants on the genetic structure of organisms inhabiting polluted environments should encompass analyses at the population, molecular, and cellular level. Following this concept, we studied the genetic constitution of zebra mussel populations from a polluted (Dp) and reference sites (Cl) at the river Drava, Croatia, and applied microsatellite and DNA damage analyses (Comet assay, micronucleus test (MNT)). Additionally, mussels from both populations were exposed to polluted wastewater in the laboratory for three days, and DNA damage was analyzed to evaluate acclimatization and genetic adaptation of the investigated populations to the polluted environment. The two populations differed in their genetic constitution. Microsatellite analysis suggested that Dp had undergone a genetic bottleneck. Comet assay did not indicate any difference in DNA damage between the two populations, but MNT revealed that Dp had an increased percentage of micronuclei in hemocytes in comparison to Cl. The laboratory experiment revealed that Dp had a lower percentage of tail DNA and a higher percentage of micronuclei than Cl. These differences between populations were possibly caused by an overall decreased fitness of Dp due to genetic drift and by an enhanced DNA repair mechanism due to acclimatization to pollution in the source habitat.
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18
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Tkalec M, Stambuk A, Srut M, Malarić K, Klobučar GIV. Oxidative and genotoxic effects of 900 MHz electromagnetic fields in the earthworm Eisenia fetida. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2013; 90:7-12. [PMID: 23352129 DOI: 10.1016/j.ecoenv.2012.12.005] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2012] [Revised: 11/22/2012] [Accepted: 12/07/2012] [Indexed: 06/01/2023]
Abstract
Accumulating evidence suggests that exposure to radiofrequency electromagnetic field (RF-EMF) can have various biological effects. In this study the oxidative and genotoxic effects were investigated in earthworms Eisenia fetida exposed in vivo to RF-EMF at the mobile phone frequency (900 MHz). Earthworms were exposed to the homogeneous RF-EMF at field levels of 10, 23, 41 and 120 V m(-1) for a period of 2h using a Gigahertz Transversal Electromagnetic (GTEM) cell. At the field level of 23 V m(-1) the effect of longer exposure (4h) and field modulation (80% AM 1 kHz sinusoidal) was investigated as well. All exposure treatments induced significant genotoxic effect in earthworms coelomocytes detected by the Comet assay, demonstrating DNA damaging capacity of 900 MHz electromagnetic radiation. Field modulation additionally increased the genotoxic effect. Moreover, our results indicated the induction of antioxidant stress response in terms of enhanced catalase and glutathione reductase activity as a result of the RF-EMF exposure, and demonstrated the generation of lipid and protein oxidative damage. Antioxidant responses and the potential of RF-EMF to induce damage to lipids, proteins and DNA differed depending on the field level applied, modulation of the field and duration of E. fetida exposure to 900 MHz electromagnetic radiation. Nature of detected DNA lesions and oxidative stress as the mechanism of action for the induction of DNA damage are discussed.
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Affiliation(s)
- Mirta Tkalec
- Faculty of Science, Department of Botany, University of Zagreb, Zagreb, Croatia
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Piola L, Fuchs J, Oneto ML, Basack S, Kesten E, Casabé N. Comparative toxicity of two glyphosate-based formulations to Eisenia andrei under laboratory conditions. CHEMOSPHERE 2013; 91:545-51. [PMID: 23332878 DOI: 10.1016/j.chemosphere.2012.12.036] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2012] [Revised: 11/21/2012] [Accepted: 12/02/2012] [Indexed: 05/05/2023]
Abstract
Glyphosate-based products are the leading post-emergent agricultural herbicides in the world, particularly in association with glyphosate tolerant crops. However, studies on the effects of glyphosate-based formulations on terrestrial receptors are scarce. This study was conducted to evaluate the comparative toxicity of two glyphosate-based products: Roundup FG (monoammonium salt, 72% acid equivalent, glyphosate-A) and Mon 8750 (monoammonium salt, 85.4% acid equivalent, glyphosate-B), towards the earthworm Eisenia andrei. Median lethal concentration (LC50) showed that glyphosate-A was 4.5-fold more toxic than glyphosate-B. Sublethal concentrations caused a concentration-dependent weight loss, consistent with the reported effect of glyphosate as uncoupler of oxidative phosphorylation. Glyphosate-A showed deleterious effects on DNA and lysosomal damage at concentrations close to the applied environmental concentrations (14.4 μg ae cm(-2)). With glyphosate-B toxic effects were observed at higher doses, close to its LC50, suggesting that the higher toxicity of formulate A could be attributed to the effects of some of the so-called "inert ingredients", either due to a direct intrinsic toxicity, or to an enhancement in the bioavailability and/or bioaccumulation of the active ingredient. Our results highlight the importance of ecotoxicological assessment not only of the active ingredients, but also of the different formulations usually employed in agricultural practices.
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Affiliation(s)
- Lucas Piola
- Toxicology and Legal Chemistry, Department of Biological Chemistry, Faculty of Exact and Natural Sciences, University of Buenos Aires, Ciudad Universitaria, Pabellón 2, 4° piso, 1428 Buenos Aires, Argentina
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