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Kryuchkova YV, Neshko AA, Gogoleva NE, Balkin AS, Safronova VI, Kargapolova KY, Shagimardanova EI, Gogolev YV, Burygin GL. Genomics and taxonomy of the glyphosate-degrading, copper-tolerant rhizospheric bacterium Achromobacter insolitus LCu2. Antonie Van Leeuwenhoek 2024; 117:105. [PMID: 39043973 DOI: 10.1007/s10482-024-01989-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 06/15/2024] [Indexed: 07/25/2024]
Abstract
A rhizosphere strain, Achromobacter insolitus LCu2, was isolated from alfalfa (Medicago sativa L.) roots. It was able to degrade of 50% glyphosate as the sole phosphorus source, and was found resistant to 10 mM copper (II) chloride, and 5 mM glyphosate-copper complexes. Inoculation of alfalfa seedlings and potato microplants with strain LCu2 promoted plant growth by 30-50%. In inoculated plants, the toxicity of the glyphosate-copper complexes to alfalfa seedlings was decreased, as compared with the noninoculated controls. The genome of A. insolitus LCu2 consisted of one circular chromosome (6,428,890 bp) and encoded 5843 protein genes and 76 RNA genes. Polyphasic taxonomic analysis showed that A. insolitus LCu2 was closely related to A. insolitus DSM23807T on the basis of the average nucleotide identity of the genomes of 22 type strains and the multilocus sequence analysis. Genome analysis revealed genes putatively responsible for (1) plant growth promotion (osmolyte, siderophore, and 1-aminocyclopropane-1-carboxylate deaminase biosynthesis and auxin metabolism); (2) degradation of organophosphonates (glyphosate oxidoreductase and multiple phn clusters responsible for the transport, regulation and C-P lyase cleavage of phosphonates); and (3) tolerance to copper and other heavy metals, effected by the CopAB-CueO system, responsible for the oxidation of copper (I) in the periplasm, and by the efflux Cus system. The putative catabolic pathways involved in the breakdown of phosphonates are predicted. A. insolitus LCu2 is promising in the production of crops and the remediation of soils contaminated with organophosphonates and heavy metals.
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Affiliation(s)
- Yelena V Kryuchkova
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Saratov Scientific Centre of the Russian Academy of Sciences (IBPPM RAS), 13 Prospekt Entuziastov, Saratov, Russia, 410049.
| | - Alexandra A Neshko
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Saratov Scientific Centre of the Russian Academy of Sciences (IBPPM RAS), 13 Prospekt Entuziastov, Saratov, Russia, 410049
| | - Natalia E Gogoleva
- Institute for Cellular and Intracellular Symbiosis, Ural Branch of the Russian Academy of Sciences, 11 Pionerskaya Street, Orenburg, Russia, 460000
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Russia, 420111
| | - Alexander S Balkin
- Institute for Cellular and Intracellular Symbiosis, Ural Branch of the Russian Academy of Sciences, 11 Pionerskaya Street, Orenburg, Russia, 460000
| | - Vera I Safronova
- All-Russia Research Institute for Agricultural Microbiology, 3 Podbelsky Shausse, Pushkin 8, St. Petersburg, Russia, 196608
| | - Kristina Yu Kargapolova
- Faculty of Agronomy, Saratov State University of Genetics, Biotechnology and Engineering named after N.I. Vavilov, 4 Pyotr Stolypin Avenue, Saratov, Russia, 410012
| | - Elena I Shagimardanova
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Russia, 420111
- Moscow Clinical Scientific Center named after Loginov MHD, 1 Novogireevskaya Street, Moscow, Russia, 111123
| | - Yuri V Gogolev
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Russia, 420111
- Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, 2/31 Lobachevsky Street, Kazan, Russia, 420111
| | - Gennady L Burygin
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Saratov Scientific Centre of the Russian Academy of Sciences (IBPPM RAS), 13 Prospekt Entuziastov, Saratov, Russia, 410049
- Faculty of Agronomy, Saratov State University of Genetics, Biotechnology and Engineering named after N.I. Vavilov, 4 Pyotr Stolypin Avenue, Saratov, Russia, 410012
- Institute of Chemistry, Chernyshevsky Saratov State University, 83 Astrakhanskaya Street, Saratov, Russia, 410012
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Hadian S, Smith DL, Kopriva S, Norkevičienė E, Supronienė S. Exploring Endophytic Bacteria from Artemisia spp. and Beneficial Traits on Pea Plants. PLANTS (BASEL, SWITZERLAND) 2024; 13:1684. [PMID: 38931116 PMCID: PMC11207345 DOI: 10.3390/plants13121684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 06/14/2024] [Accepted: 06/15/2024] [Indexed: 06/28/2024]
Abstract
Endophytic microorganisms represent promising solutions to environmental challenges inherent in conventional agricultural practices. This study concentrates on the identification of endophytic bacteria isolated from the root, stem, and leaf tissues of four Artemisia plant species. Sixty-one strains were isolated and sequenced by 16S rDNA. Sequencing revealed diverse genera among the isolated bacteria from different Artemisia species, including Bacillus, Pseudomonas, Enterobacter, and Lysinibacillus. AR11 and VR24 obtained from the roots of A. absinthium and A. vulgaris demonstrated significant inhibition on Fusarium c.f. oxysporum mycelial growth. In addition, AR11, AR32, and CR25 exhibited significant activity in phosphatase solubilization, nitrogen fixation, and indole production, highlighting their potential to facilitate plant growth. A comparative analysis of Artemisia species showed that root isolates from A. absinthium, A. campestris, and A. vulgaris have beneficial properties for inhibiting pathogen growth and enhancing plant growth. AR11 with 100% similarity to Bacillus thuringiensis, could be considered a promising candidate for further investigation as microbial biofertilizers. This finding highlights their potential as environmentally friendly alternatives to chemical pesticides, thereby contributing to sustainable crop protection practices.
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Affiliation(s)
- Shervin Hadian
- Microbiology Laboratory, Lithuanian Research Centre for Agriculture and Forestry, Institute of Agriculture, Instituto Ave. 1, Akademija, LT-58344 Kėdainiai, Lithuania;
| | - Donald L. Smith
- Department of Plant Science, McGill University, Montreal, QC H9X 3V9, Canada;
| | | | - Eglė Norkevičienė
- Department of Grass Breeding, Lithuanian Research Centre for Agriculture and Forestry, Institute of Agriculture, Instituto Ave. 1, Akademija, LT-58344 Kėdainiai, Lithuania;
| | - Skaidrė Supronienė
- Microbiology Laboratory, Lithuanian Research Centre for Agriculture and Forestry, Institute of Agriculture, Instituto Ave. 1, Akademija, LT-58344 Kėdainiai, Lithuania;
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Anand U, Pal T, Yadav N, Singh VK, Tripathi V, Choudhary KK, Shukla AK, Sunita K, Kumar A, Bontempi E, Ma Y, Kolton M, Singh AK. Current Scenario and Future Prospects of Endophytic Microbes: Promising Candidates for Abiotic and Biotic Stress Management for Agricultural and Environmental Sustainability. MICROBIAL ECOLOGY 2023; 86:1455-1486. [PMID: 36917283 PMCID: PMC10497456 DOI: 10.1007/s00248-023-02190-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Globally, substantial research into endophytic microbes is being conducted to increase agricultural and environmental sustainability. Endophytic microbes such as bacteria, actinomycetes, and fungi inhabit ubiquitously within the tissues of all plant species without causing any harm or disease. Endophytes form symbiotic relationships with diverse plant species and can regulate numerous host functions, including resistance to abiotic and biotic stresses, growth and development, and stimulating immune systems. Moreover, plant endophytes play a dominant role in nutrient cycling, biodegradation, and bioremediation, and are widely used in many industries. Endophytes have a stronger predisposition for enhancing mineral and metal solubility by cells through the secretion of organic acids with low molecular weight and metal-specific ligands (such as siderophores) that alter soil pH and boost binding activity. Finally, endophytes synthesize various bioactive compounds with high competence that are promising candidates for new drugs, antibiotics, and medicines. Bioprospecting of endophytic novel secondary metabolites has given momentum to sustainable agriculture for combating environmental stresses. Biotechnological interventions with the aid of endophytes played a pivotal role in crop improvement to mitigate biotic and abiotic stress conditions like drought, salinity, xenobiotic compounds, and heavy metals. Identification of putative genes from endophytes conferring resistance and tolerance to crop diseases, apart from those involved in the accumulation and degradation of contaminants, could open new avenues in agricultural research and development. Furthermore, a detailed molecular and biochemical understanding of endophyte entry and colonization strategy in the host would better help in manipulating crop productivity under changing climatic conditions. Therefore, the present review highlights current research trends based on the SCOPUS database, potential biotechnological interventions of endophytic microorganisms in combating environmental stresses influencing crop productivity, future opportunities of endophytes in improving plant stress tolerance, and their contribution to sustainable remediation of hazardous environmental contaminants.
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Affiliation(s)
- Uttpal Anand
- Zuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Midreshet Ben-Gurion, Israel.
| | - Tarun Pal
- Zuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Midreshet Ben-Gurion, Israel
| | - Niraj Yadav
- French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sde Boker Campus, 8499000, Midreshet Ben-Gurion, Israel
| | - Vipin Kumar Singh
- Department of Botany, K.S. Saket P.G. College, Ayodhya affiliated to Dr. Rammanohar Lohia Avadh University, Ayodhya, 224123, Uttar Pradesh, India
| | - Vijay Tripathi
- Department of Molecular and Cellular Engineering, Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, 211007, Uttar Pradesh, India
| | - Krishna Kumar Choudhary
- Department of Botany, Mahila Mahavidyalaya, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Awadhesh Kumar Shukla
- Department of Botany, K.S. Saket P.G. College, Ayodhya affiliated to Dr. Rammanohar Lohia Avadh University, Ayodhya, 224123, Uttar Pradesh, India
| | - Kumari Sunita
- Department of Botany, Deen Dayal Upadhyay Gorakhpur University, Gorakhpur, Uttar Pradesh, 273009, India
| | - Ajay Kumar
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, P.O. Box 15159, 7505101, Rishon, Lezion, Israel
| | - Elza Bontempi
- INSTM and Chemistry for Technologies Laboratory, University of Brescia, Via Branze 38, 25123, Brescia, Italy.
| | - Ying Ma
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal
| | - Max Kolton
- French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sde Boker Campus, 8499000, Midreshet Ben-Gurion, Israel
| | - Amit Kishore Singh
- Department of Botany, Bhagalpur National College (A constituent unit of Tilka Manjhi Bhagalpur University), Bhagalpur, 812007, Bihar, India.
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Fan D, Schwinghamer T, Liu S, Xia O, Ge C, Chen Q, Smith DL. Characterization of endophytic bacteriome diversity and associated beneficial bacteria inhabiting a macrophyte Eichhornia crassipes. FRONTIERS IN PLANT SCIENCE 2023; 14:1176648. [PMID: 37404529 PMCID: PMC10316030 DOI: 10.3389/fpls.2023.1176648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 05/24/2023] [Indexed: 07/06/2023]
Abstract
Introduction The endosphere of a plant is an interface containing a thriving community of endobacteria that can affect plant growth and potential for bioremediation. Eichhornia crassipes is an aquatic macrophyte, adapted to estuarine and freshwater ecosystems, which harbors a diverse bacterial community. Despite this, we currently lack a predictive understanding of how E. crassipes taxonomically structure the endobacterial community assemblies across distinct habitats (root, stem, and leaf). Methods In the present study, we assessed the endophytic bacteriome from different compartments using 16S rRNA gene sequencing analysis and verified the in vitro plant beneficial potential of isolated bacterial endophytes of E. crassipes. Results and discussion Plant compartments displayed a significant impact on the endobacterial community structures. Stem and leaf tissues were more selective, and the community exhibited a lower richness and diversity than root tissue. The taxonomic analysis of operational taxonomic units (OTUs) showed that the major phyla belonged to Proteobacteria and Actinobacteriota (> 80% in total). The most abundant genera in the sampled endosphere was Delftia in both stem and leaf samples. Members of the family Rhizobiaceae, such as in both stem and leaf samples. Members of the family Rhizobiaceae, such as Allorhizobium- Neorhizobium-Pararhizobium-Rhizobium were mainly associated with leaf tissue, whereas the genera Nannocystis and Nitrospira from the families Nannocystaceae and Nitrospiraceae, respectively, were statistically significantly associated with root tissue. Piscinibacter and Steroidobacter were putative keystone taxa of stem tissue. Most of the endophytic bacteria isolated from E. crassipes showed in vitro plant beneficial effects known to stimulate plant growth and induce plant resistance to stresses. This study provides new insights into the distribution and interaction of endobacteria across different compartments of E. crassipes Future study of endobacterial communities, using both culture-dependent and -independent techniques, will explore the mechanisms underlying the wide-spread adaptability of E. crassipesto various ecosystems and contribute to the development of efficient bacterial consortia for bioremediation and plant growth promotion.
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Affiliation(s)
- Di Fan
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Timothy Schwinghamer
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, AB, Canada
| | - Shuaitong Liu
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Ouyuan Xia
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Chunmei Ge
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Qun Chen
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Donald L. Smith
- Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada
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Tshikhudo PP, Ntushelo K, Mudau FN. Sustainable Applications of Endophytic Bacteria and Their Physiological/Biochemical Roles on Medicinal and Herbal Plants: Review. Microorganisms 2023; 11:microorganisms11020453. [PMID: 36838418 PMCID: PMC9967847 DOI: 10.3390/microorganisms11020453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 02/02/2023] [Accepted: 02/06/2023] [Indexed: 02/15/2023] Open
Abstract
Bacterial endophytes reside within the tissues of living plant species without causing any harm or disease to their hosts. These endophytes can be isolated, identified, characterized, and used as biofertilizers. Moreover, bacterial endophytes increase the plants' resistance against diseases, pests, and parasites, and are a promising source of pharmaceutically important bioactives. For instance, the production of antibiotics, auxins, biosurfactants, cytokinin's, ethylene, enzymes, gibberellins, nitric oxide organic acids, osmolytes, and siderophores is accredited to the existence of various bacterial strains. Thus, this manuscript intends to review the sustainable applications of endophytic bacteria to promote the growth, development, and chemical integrity of medicinal and herbal plants, as well as their role in plant physiology. The study of the importance of bacterial endophytes in the suppression of diseases in medicinal and herbal plants is crucial and a promising area of future investigation.
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Affiliation(s)
- Phumudzo Patrick Tshikhudo
- Department of Agriculture, Land Reform and Rural Development, Directorate Plant Health, Division Pest Risk Analysis, Arcadia, Pretoria 0001, South Africa
- Correspondence:
| | - Khayalethu Ntushelo
- Department of Agriculture and Animal Health, College of Agriculture and Environmental Sciences, University of South Africa, Private Bag X6, Florida 1710, South Africa
| | - Fhatuwani Nixwell Mudau
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa
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Armando M, Barthélémi L, Couret I, Verdier C, Dupont C, Jumas-Bilak E, Grau D. Recurrent environmental contamination in a centralized radiopharmacy unit by Achromobacter spp: results of a large microbiological investigation. Am J Infect Control 2022; 51:557-562. [PMID: 35870659 DOI: 10.1016/j.ajic.2022.07.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 07/02/2022] [Accepted: 07/06/2022] [Indexed: 11/01/2022]
Abstract
BACKGROUND Radiopharmaceuticals preparation unit, such as every aseptic preparation units, are strictly monitored in terms of microbiological contamination. Despite all biocontamination control procedures, our radiopharmacy unit faced repeated environnmental contamination by Achromobacter spp which necessitated a large environmental investigation. METHOD Microbiological controls were carried out using Count Tact agars (Biomérieux) for flat surfaces, dry swabbing for hard to reach areas and containers were filled with a sterile water solution (then filtrated on 0.45µm membrane and seeded). Microbiological identification was performed by mass spectrometry (MALDI-TOF-MS, Brucker) on each positive sample. RESULTS Achromobacter spp was found in 10% of the 413 samples during the 8 months investigation period. The proportion of positive samples was stable among time but their location was unpredictable. The highest inoculum was finally found in the buckets used for biocleaning. DISCUSSION Samples from cleaning buckets taken by dry swabbing were at first negative, but the use of a non-routinely used sampling method allowed to discover the reservoir of this persistent contamination. CONCLUSION This investigation alerted us on the high microbiological risk associated with reusable plastic containers and the importance of a sampling method adapted to critical locations.
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Affiliation(s)
- M Armando
- Radiopharmacy Unit, Department of Preparations and controls, University Teaching Hospital (UTH) of Montpellier, France
| | - L Barthélémi
- Radiopharmacy Unit, Department of Preparations and controls, University Teaching Hospital (UTH) of Montpellier, France
| | - I Couret
- Radiopharmacy Unit, Department of Preparations and controls, University Teaching Hospital (UTH) of Montpellier, France; Unit 1194 INSERM, Team Radiobiology and targeted radiotherapy, Cancer Research Institute of Montpellier, Montpellier, France
| | - C Verdier
- Pharmaceutical Controls Laboratory, Department of Preparations and controls, UTH of Montpellier, France
| | - C Dupont
- UMR 5569 HSM, Team "Pathogènes Hydriques Santé et Environnements", Unit of Bacteriology, University of Pharmacy, Montpellier, France
| | - E Jumas-Bilak
- Infection Control Department, UTH of Montpellier, France; UMR 5569 HSM, Team "Pathogènes Hydriques Santé et Environnements", Unit of Bacteriology, University of Pharmacy, Montpellier, France
| | - D Grau
- Infection Control Department, UTH of Montpellier, France; UMR 5569 HSM, Team "Pathogènes Hydriques Santé et Environnements", Unit of Bacteriology, University of Pharmacy, Montpellier, France
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de Oliveira AA, Ramalho MDO, Moreau CS, Campos AEDC, Harakava R, Bueno OC. Exploring the diversity and potential interactions of bacterial and fungal endophytes associated with different cultivars of olive (Olea europaea) in Brazil. Microbiol Res 2022; 263:127128. [PMID: 35868260 DOI: 10.1016/j.micres.2022.127128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 07/09/2022] [Accepted: 07/11/2022] [Indexed: 10/17/2022]
Abstract
The olive crop has expanded in the southeastern region of South America, particularly in Brazil. Thus, the objectives of this study were to identify the diversity of endophytic microorganisms associated with olive leaves with culture-dependent and culture-independent methods, to explore which factors influence the composition and abundance of this microbial community, to identify the trophic mode of these fungi by FunGuild and, to verify type associations between bacterial and fungal communities. Leaf samples were collected from 93 plants in nine locations in the Brazilian states of São Paulo and Minas Gerais. Leaves were first superficially disinfected before fungal isolation and next-generation metabarcoding sequencing was completed targeting the 16S rRNA regions for bacteria and ITS1 for fungi. In total, 800 isolates were obtained, which were grouped into 191 morphotypes and molecularly identified, resulting in 38 genera, 32 of which were recorded for the first time in cultivated olive trees in Brazil. For the isolated fungi, the most abundant trophic level was pathotrophic and for the culture-independent method was unidentified followed by symbiotrophic. The metabarcoding results revealed that factors such as plant age, altitudinal gradient, and geographic location can influence the microbial community of commercial olive plants, while the specific cultivar did not.
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Affiliation(s)
- Amanda Aparecida de Oliveira
- São Paulo State University (UNESP) - Institute of Biosciences - Campus Rio Claro, Department of General and Applied Biology. Center for Social Insect Studies, Rio Claro, SP 13506-900, Brazil; Biological Institute of São Paulo - Vila Mariana, São Paulo, SP 04014-002, Brazil.
| | | | - Corrie Saux Moreau
- Cornell University, Department of Entomology, Ithaca, NY 14853, USA; Cornell University, Department of Ecology and Evolutionary Biology, Ithaca, NY 14853, USA
| | | | - Ricardo Harakava
- Biological Institute of São Paulo - Vila Mariana, São Paulo, SP 04014-002, Brazil
| | - Odair Correa Bueno
- São Paulo State University (UNESP) - Institute of Biosciences - Campus Rio Claro, Department of General and Applied Biology. Center for Social Insect Studies, Rio Claro, SP 13506-900, Brazil
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Rane NR, Tapase S, Kanojia A, Watharkar A, Salama ES, Jang M, Kumar Yadav K, Amin MA, Cabral-Pinto MMS, Jadhav JP, Jeon BH. Molecular insights into plant-microbe interactions for sustainable remediation of contaminated environment. BIORESOURCE TECHNOLOGY 2022; 344:126246. [PMID: 34743992 DOI: 10.1016/j.biortech.2021.126246] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 10/24/2021] [Accepted: 10/26/2021] [Indexed: 06/13/2023]
Abstract
The widespread distribution of organic and inorganic pollutants in water resources have increased due to rapid industrialization. Rhizospheric zone-associated bacteria along with endophytic bacteria show a significant role in remediation of various pollutants. Metaomics technologies are gaining an advantage over traditional methods because of their capability to obtain detailed information on exclusive microbial communities in rhizosphere of the plant including the unculturable microorganisms. Transcriptomics, proteomics, and metabolomics are functional methodologies that help to reveal the mechanisms of plant-microbe interactions and their synergistic roles in remediation of pollutants. Intensive analysis of metaomics data can be useful to understand the interrelationships of various metabolic activities between plants and microbes. This review comprehensively discusses recent advances in omics applications made hitherto to understand the mechanisms of plant-microbe interactions during phytoremediation. It extends the delivery of the insightful information on plant-microbiomes communications with an emphasis on their genetic, biochemical, physical, metabolic, and environmental interactions.
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Affiliation(s)
- Niraj R Rane
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Savita Tapase
- Department of Biotechnology, Shivaji University, Kolhapur 416004, India
| | - Aakansha Kanojia
- Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
| | - Anuprita Watharkar
- Amity Institute of Biotechnology, Amity University, Bhatan, Panvel, Mumbai, India
| | - El-Sayed Salama
- Occupational and Environmental Health Department, School of Public Health, Lanzhou University, Lanzhou 730000, Gansu Province, People's Republic of China
| | - Min Jang
- Department of Environmental Engineering, Kwangwoon University, Seoul 01897, Republic of Korea
| | - Krishna Kumar Yadav
- Faculty of Science and Technology, Madhyanchal Professional University, Ratibad, Bhopal, 462044, India
| | - Mohammed A Amin
- Department of Chemistry, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Marina M S Cabral-Pinto
- Geobiotec Research Centre, Department of Geoscience, University of Aveiro, 3810-193, Aveiro, Portugal
| | - Jyoti P Jadhav
- Department of Biochemistry, Shivaji University, Kolhapur 416004, India
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea.
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Gupta S, Kaur G, Nirwan J. Role of Endophytes in Plant-Associated Remediation and Plant Growth Promotion: A Deep Insight. Fungal Biol 2021. [DOI: 10.1007/978-3-030-54422-5_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Vassallo A, Miceli E, Fagorzi C, Castronovo LM, Del Duca S, Chioccioli S, Venditto S, Coppini E, Fibbi D, Fani R. Temporal Evolution of Bacterial Endophytes Associated to the Roots of Phragmites australis Exploited in Phytodepuration of Wastewater. Front Microbiol 2020; 11:1652. [PMID: 32903322 PMCID: PMC7380131 DOI: 10.3389/fmicb.2020.01652] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 06/25/2020] [Indexed: 01/02/2023] Open
Abstract
Improvement of industrial productions through more environment-friendly processes is a hot topic. In particular, land and marine environment pollution is a main concern, considering that recalcitrant compounds can be spread and persist for a long time. In this context, an efficient and cost-effective treatment of wastewater derived from industrial applications is crucial. Phytodepuration has been considered as a possible solution and it is based on the use of plants and their associated microorganisms to remove and/or transform pollutants. In this work we investigated the culturable microbiota of Phragmites australis roots, sampled from the constructed wetlands (CWs) pilot plant in the G.I.D.A. SpA wastewater treatment plant (WWTP) of Calice (Prato, Tuscany, Italy) before and after the CW activation in order to check how the influx of wastewater might affect the resident bacterial community. P. australis specimens were sampled and a panel of 294 culturable bacteria were isolated and characterized. This allowed to identify the dynamics of the microbiota composition triggered by the presence of wastewater. 27 out of 37 bacterial genera detected were exclusively associated to wastewater, and Pseudomonas was constantly the most represented genus. Moreover, isolates were assayed for their resistance against eight different antibiotics and synthetic wastewater (SWW). Data obtained revealed the presence of resistant phenotypes, including multi-drug resistant bacteria, and a general trend regarding the temporal evolution of resistance patterns: indeed, a direct correlation linking the appearance of antibiotic- and SWW-resistance with the time of exposure to wastewater was observed. In particular, nine isolates showed an interesting behavior since their growth was positively affected by the highest concentrations of SWW. Noteworthy, this study is among the few investigating the P. australis microbiota prior to the plant activation.
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Affiliation(s)
- Alberto Vassallo
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Elisangela Miceli
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Camilla Fagorzi
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | | | - Sara Del Duca
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Sofia Chioccioli
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Silvia Venditto
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | | | | | - Renato Fani
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
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11
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Waigi MG, Wang J, Yang B, Gudda FO, Ling W, Liu J, Gao Y. Endophytic Bacteria in in planta Organopollutant Detoxification in Crops. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2020; 252:1-50. [PMID: 31451946 DOI: 10.1007/398_2019_33] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Microbe-assisted organopollutant removal, or in planta crop decontamination, is based on an interactive system between organopollutant-degrading endophytic bacteria (DEBOP) and crops in alleviating organic toxins in plants. This script focuses on the fast-growing body of literature that has recently bloomed in organopollutant control in agricultural plants. The various facets of DEBOP under study include their colonization, distribution, plant growth-promoting mechanisms, and modes of action in the detoxification process in plants. Also, an assessment of the biotechnological advances, advantages, and bottlenecks in accelerating the implementation of this decontamination strategy will be undertaken. The highlighted key research directions from this review will shape the future of agro-environmental sustainability and preservation of human health.
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Affiliation(s)
- Michael Gatheru Waigi
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Jian Wang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Bing Yang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Fredrick Owino Gudda
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Wanting Ling
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Juan Liu
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yanzheng Gao
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
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12
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Suyamud B, Thiravetyan P, Gadd GM, Panyapinyopol B, Inthorn D. Bisphenol A removal from a plastic industry wastewater by Dracaena sanderiana endophytic bacteria and Bacillus cereus NI. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:167-175. [PMID: 31468977 DOI: 10.1080/15226514.2019.1652563] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Understanding the significance of plant-endophytic bacteria for bisphenol A (BPA) removal is of importance for any application of organic pollutant phytoremediation. In this research, Dracaena sanderiana with endophytic Pantoea dispersa showed higher BPA removal than uninoculated plants at 89.54 ± 0.88% and 79.08 ± 1.20%, respectively. Quantitative Real-Time PCR (qPCR) showed that P. dispersa increased from 3.93 × 107 to 8.80 × 107 16S rRNA gene copy number in root tissues from day 0 to day 5 which indicated that it could assist the plant in removing BPA during the treatment period. pH, chemical oxygen demand (COD), biochemical oxygen demand (BOD), total dissolved solids (TDS), conductivity, and salinity were reduced after 5 days of the experimental period. Particularly, BOD significantly decreased due to activities of the plants and microorganisms. Furthermore, an indigenous bacterial strain, Bacillus cereus NI, from the wastewater could remove BPA in high TDS and alkalinity condition of the wastewater. This work suggests that D. sanderiana plants could be used as a tertiary process in a wastewater treatment system and should be combined with its endophytic bacteria. In addition, B. cereus NI could also be applied for BPA removal from wastewaters with high TDS and salinity.
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Affiliation(s)
- Bongkotrat Suyamud
- Department of Sanitary Engineering, Faculty of Public Health, Mahidol University, Bangkok, Thailand
| | - Paitip Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, Thailand
| | | | - Bunyarit Panyapinyopol
- Department of Sanitary Engineering, Faculty of Public Health, Mahidol University, Bangkok, Thailand
- Center of Excellence on Environmental Health and Toxicology (EHT), CHE, Ministry of Education, Bangkok, Thailand
| | - Duangrat Inthorn
- Center of Excellence on Environmental Health and Toxicology (EHT), CHE, Ministry of Education, Bangkok, Thailand
- Department of Environmental Health Sciences, Faculty of Public Health, Mahidol University, Bangkok, Thailand
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13
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Mohapatra B, Kazy SK, Sar P. Comparative genome analysis of arsenic reducing, hydrocarbon metabolizing groundwater bacterium Achromobacter sp. KAs 3-5T explains its competitive edge for survival in aquifer environment. Genomics 2019; 111:1604-1619. [DOI: 10.1016/j.ygeno.2018.11.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 10/25/2018] [Accepted: 11/05/2018] [Indexed: 11/24/2022]
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14
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He W, Megharaj M, Wu CY, Subashchandrabose SR, Dai CC. Endophyte-assisted phytoremediation: mechanisms and current application strategies for soil mixed pollutants. Crit Rev Biotechnol 2019; 40:31-45. [PMID: 31656090 DOI: 10.1080/07388551.2019.1675582] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Phytoremediation uses plants and associated microbes to remove pollutants from the environment and is considered a promising bioremediation method. Compared with well-described single contaminant treatments, the number of studies reporting phytoremediation of soil mixed pollutants has increased recently. Endophytes, including bacteria and fungi, exhibit beneficial traits for the promotion of plant growth, stress alleviation, and biodegradation. Moreover, endophytes either directly or indirectly assist host plants to survive high concentrations of organic and inorganic pollutants in the soil. Endophytic microorganisms can also regulate the plant metabolism in different ways, exhibiting a variety of physiological characteristics. This review summarizes the taxa and physiological properties of endophytic microorganisms that may participate in the detoxification of contaminant mixtures. Furthermore, potential biomolecules that may enhance endophyte mediated phytoremediation are discussed. The practical applications of pollutant-degrading endophytes and current strategies for applying this valuable bio-resource to soil phytoremediation are summarized.
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Affiliation(s)
- Wei He
- College of Life Sciences, Nanjing Normal University, Nanjing, China.,Global Centre for Environmental Remediation (GCER), The University of Newcastle (UoN), Callaghan, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), The University of Newcastle (UoN), Callaghan, Australia
| | - Chun-Ya Wu
- College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Suresh R Subashchandrabose
- Global Centre for Environmental Remediation (GCER), The University of Newcastle (UoN), Callaghan, Australia
| | - Chuan-Chao Dai
- College of Life Sciences, Nanjing Normal University, Nanjing, China
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15
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Tian H, Hu Y, Xu X, Hui M, Hu Y, Qi W, Xu H, Li B. Enhanced wastewater treatment with high o-aminophenol concentration by two-stage MABR and its biodegradation mechanism. BIORESOURCE TECHNOLOGY 2019; 289:121649. [PMID: 31220766 DOI: 10.1016/j.biortech.2019.121649] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 06/11/2019] [Accepted: 06/12/2019] [Indexed: 06/09/2023]
Abstract
A two-stage bench-scale membrane-aerated biofilm reactor (MABR) was developed to treat wastewater containing high o-aminophenol (OAP) content. Long-term process showed that MABR-1 can achieve the removal rates of 17.6 g OAP/m2 d and 29.4 g COD/m2 d. MABR-2 can effectively perform more than 90% TN removal with the addition of external glucose. Pseudomonas and Nitrosomonas were the key functional genera in MABR-1 and MABR-2, respectively. Functional genes related to OAP degradation, including amnA,B,D, dmpC,H, mhpD,E,F, and bphH,I,J, were detected, and the involved enzymes were predicted. The OAP-degrading species and functional contribution analysis indicated that OAP can be metabolized by a single Pseudomonas or by the synergistic effects of bacteria, mainly including Cupriavidus, Thauera, unclassified Sphingomonadaceae, Lysobacter, and Azotobacter or by the cooperation of all the bacteria above. These diversified patterns guaranteed the high efficiency for OAP removal in MABR when treating wastewater with high OAP concentration.
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Affiliation(s)
- Hailong Tian
- College of Bioengineering, Henan University of Technology, Zhengzhou 450001, PR China
| | - Yanzhuo Hu
- College of Bioengineering, Henan University of Technology, Zhengzhou 450001, PR China
| | - Xingjian Xu
- Hinggan League Academy of Agriculture and Animal Husbandry, Ulanhot, Inner Mongolia, 137400, PR China
| | - Ming Hui
- College of Bioengineering, Henan University of Technology, Zhengzhou 450001, PR China
| | - Yuansen Hu
- College of Bioengineering, Henan University of Technology, Zhengzhou 450001, PR China
| | - Wanxin Qi
- College of Bioengineering, Henan University of Technology, Zhengzhou 450001, PR China
| | - Hongru Xu
- Horqin Right Front Banner Agriculture Research Institute, Hinggan League, Inner Mongolia, 137713, PR China
| | - Baoan Li
- State Key Laboratory of Chemical Engineering, Tianjin University, Tianjin 300072, PR China.
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16
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Saleem H, Arslan M, Rehman K, Tahseen R, Afzal M. Phragmites australis - a helophytic grass - can establish successful partnership with phenol-degrading bacteria in a floating treatment wetland. Saudi J Biol Sci 2019; 26:1179-1186. [PMID: 31516347 PMCID: PMC6733312 DOI: 10.1016/j.sjbs.2018.01.014] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2017] [Revised: 01/25/2018] [Accepted: 01/28/2018] [Indexed: 11/19/2022] Open
Abstract
Helophytic plants contribute significantly in phytoremediation of a variety of pollutants due to their physiological or biochemical mechanisms. Phenol, which is reported to have negative/deleterious effects on plant metabolism at concentrations higher than 500 mg/L, remains hard to be removed from the environmental compartments using conventional phytoremediation procedures. The present study aims to investigate the feasibility of using P. australis (a helophytic grass) in combination with three bacterial strains namely Acinetobacter lwofii ACRH76, Bacillus cereus LORH97, and Pseudomonas sp. LCRH90, in a floating treatment wetland (FTW) for the removal of phenol from contaminated water. The strains were screened based on their phenol degrading and plant growth promoting activities. We found that inoculated bacteria were able to colonize in the roots and shoots of P. australis, suggesting their potential role in the successful removal of phenol from the contaminated water. Pseudomonas sp. LCRH90 dominated the bacterial community structure followed by A. lowfii ACRH76 and B. cereus LORH97. The removal rate was significantly high when compared with the individual partners, i.e., plants and bacteria separately. The plant biomass, which was drastically reduced in the presence of phenol, recovered significantly with the inoculation of bacterial consortia. Likewise, highest reduction in chemical oxygen demand (COD), biochemical oxygen demand (BOD), and total organic carbon (TOC) is achieved when both plants and bacteria were employed. The study, therefore, suggests that P. australis in combination with efficient bacteria can be a suitable choice to FTWs for phenol-degradation in water.
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Affiliation(s)
- Hamna Saleem
- Deparment Molecular Life Sciences, Friedrich-Schiller-University Jena, Jena, Germany
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Muhammad Arslan
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
| | - Khadeeja Rehman
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Razia Tahseen
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Muhammad Afzal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
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17
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Nguyen PM, Afzal M, Ullah I, Shahid N, Baqar M, Arslan M. Removal of pharmaceuticals and personal care products using constructed wetlands: effective plant-bacteria synergism may enhance degradation efficiency. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:21109-21126. [PMID: 31134537 DOI: 10.1007/s11356-019-05320-w] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Accepted: 04/30/2019] [Indexed: 06/09/2023]
Abstract
Post-industrial era has witnessed significant advancements at unprecedented rates in the field of medicine and cosmetics, which has led to affluent use of pharmaceuticals and personal care products (PPCPs). However, this has exacerbated the influx of various pollutants in the environment affecting living organisms through multiple routes. Thousands of PPCPs of various classes-prescription and non-prescription drugs-are discharged directly into the environment. In this review, we have surveyed literature investigating plant-based remediation practices to remove PPCPs from the environment. Our specific aim is to highlight the importance of plant-bacteria interplay for sustainable remediation of PPCPs. The green technologies not only are successfully curbing organic pollutants but also have displayed certain limitations. For example, the presence of biologically active compounds within plant rhizosphere may affect plant growth and hence compromise the phytoremediation potential of constructed wetlands. To overcome these hindrances, combined use of plants and beneficial bacteria has been employed. The microbes (both rhizo- and endophytes) in this type of system not only degrade PPCPs directly but also accelerate plant growth by producing growth-promoting enzymes and hence remediation potential of constructed wetlands.
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Affiliation(s)
- Phuong Minh Nguyen
- Department of Environmental Technology, Faculty of Environmental Sciences, VNU University of Science, Vietnam National University, 334 Nguyen Trai, Thanh Xuan, Hanoi, Vietnam.
| | - Muhammad Afzal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, 38000, Pakistan
| | - Inaam Ullah
- International Join laboratory for Global Climate Change Ecology, School of Life Sciences, Henan University, Kaifeng, Henan, China
| | - Naeem Shahid
- Department System Ecotoxicology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, Leipzig, 04318, Germany
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Islamabad, Pakistan
| | - Mujtaba Baqar
- Sustainable Development Study Centre, Government College University Lahore, Lahore, 54000, Pakistan
| | - Muhammad Arslan
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, 38000, Pakistan.
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, 04318, Leipzig, Germany.
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18
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Iqbal A, Mukherjee M, Rashid J, Khan SA, Ali MA, Arshad M. Development of plant-microbe phytoremediation system for petroleum hydrocarbon degradation: An insight from alkb gene expression and phytotoxicity analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 671:696-704. [PMID: 30939322 DOI: 10.1016/j.scitotenv.2019.03.331] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 03/09/2019] [Accepted: 03/21/2019] [Indexed: 05/18/2023]
Abstract
Aim of present work was to assess in-planta association potential of isolated endophytic bacterial strain Pseudomonas sp. (J10) (KY608252) with two cultivars of Lolium perenne L. (small & jumbo) and Arabidopsis thaliana L. for total petroleum hydrocarbon (TPH) degradation, alkane monooxygenase (alkb) gene expression and phytotoxicity analysis. A plant-microbe phytoremediation system was established to investigate the bacteria's ability to colonize the plant body and quantification of alkb gene to help withstand TPH stress in soil as well as in hydroponics. A real-time PCR method was developed to analyze bacterial colonization and survival within the plant body. Analysis revealed that J10 efficiently colonized all the tested plant species and expressed alkb gene under hydrocarbon stress ranging between 3.7 × 102-3.9 × 106 in A. thaliana and L. perenne (small), respectively. The colonization was more pronounced in soil as compared to hydroponic system. J10 inoculation reduced phytotoxicity and suggested that inoculation had a positive effect on plant growth under stress conditions as compared to control. L. perenne (small) showed significant TPH removal efficiency (45.6%) followed by L. perenne jumbo (24.5%) and A. thaliana (6.2%). In hydroponics, L. perenne (small) degraded about 28.2% TPH followed by L. perenne (jumbo) as 24.4%. Potential of the indigenously isolated plant endophytes may be exploited further for phytoremediation efficiency and industrial applications.
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Affiliation(s)
- Aneela Iqbal
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Sector H-12, Islamabad 44000, Pakistan; Soil and Crop Sciences, Texas A&M University, College Station 77843, TX, USA
| | - Maitreyee Mukherjee
- Soil and Crop Sciences, Texas A&M University, College Station 77843, TX, USA
| | - Jamshaid Rashid
- Department of Environmental Science, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Saud Ahmed Khan
- Department of Econometrics, Pakistan Institute of Development Economics (PIDE), Quaid-i-Azam University Campus, P.O. Box. 1091, Islamabad 44000, Pakistan
| | - Muhammad Arif Ali
- Department of Soil Sciences, Faculty of Agriculture Sciences and Technology, Bahauddin Zakariya University Multan, Pakistan
| | - Muhammad Arshad
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Sector H-12, Islamabad 44000, Pakistan.
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19
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Iqbal A, Arshad M, Karthikeyan R, Gentry TJ, Rashid J, Ahmed I, Schwab AP. Diesel degrading bacterial endophytes with plant growth promoting potential isolated from a petroleum storage facility. 3 Biotech 2019; 9:35. [PMID: 30622873 DOI: 10.1007/s13205-018-1561-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Accepted: 12/29/2018] [Indexed: 12/15/2022] Open
Abstract
Thirteen (13) endophytic bacterial strains were isolated from Echinochloa crus-galli (Cockspur grass) and Cynodon dactylon (Bermuda grass) growing in an oil-contaminated site at a petroleum storage and transportation facility. Of the 13 strains assessed for their potential to degrade monoaromatic compounds (phenol, toluene, and xylene) and diesel and for their plant growth promoting (PGP) ability (phosphate solubilization, siderophores and 1-aminocyclopropane-1-carboxylate (ACC) deaminase production), isolate J10 (identified as Pseudomonas sp. by 16S rRNA gene sequencing) was found to the best diesel biodegrader with the best PGP traits. The Monod model used for Pseudomonas sp. J10 growth kinetics on diesel fuel as the sole carbon source showed that the maximum specific bacterial growth rate was 0.0644 h- 1 and the half velocity constant (K s ) was estimated as 4570 mg L- 1. The overall growth yield coefficient and apparent growth yield were determined to be 0.271 g h- 1 and 0.127 g cells/g substrate, respectively. Pseudomonas sp. J10 removed 69% diesel in four days as determined by gas chromatographic (GC) analysis. These findings could assist in developing an endophyte assisted efficient diesel biodegradation system using Pseudomonas sp. J10 isolated from Echinochloa crus-galli.
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Affiliation(s)
- Aneela Iqbal
- 1Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Sector H-12, Islamabad, 44000 Pakistan
- 2Biological and Agricultural Engineering, Texas A&M University, College Station, TX 77843 USA
- 3Soil and Crop Sciences, Texas A&M University, College Station, TX 77843 USA
| | - Muhammad Arshad
- 1Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Sector H-12, Islamabad, 44000 Pakistan
| | - Raghupathy Karthikeyan
- 2Biological and Agricultural Engineering, Texas A&M University, College Station, TX 77843 USA
| | - Terry J Gentry
- 3Soil and Crop Sciences, Texas A&M University, College Station, TX 77843 USA
| | - Jamshaid Rashid
- 4Department of Environmental Science, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320 Pakistan
| | - Iftikhar Ahmed
- 5Bio-resource Conservation Institute (BCI), National Culture Collection of Pakistan (NCCP), National Agricultural Research Centre (NARC), Park Road, Islamabad, 45500 Pakistan
| | - Arthur Paul Schwab
- 3Soil and Crop Sciences, Texas A&M University, College Station, TX 77843 USA
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20
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Daudzai Z, Treesubsuntorn C, Thiravetyan P. Inoculated Clitoria ternatea with Bacillus cereus ERBP for enhancing gaseous ethylbenzene phytoremediation: Plant metabolites and expression of ethylbenzene degradation genes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 164:50-60. [PMID: 30096603 DOI: 10.1016/j.ecoenv.2018.07.121] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 07/03/2018] [Accepted: 07/30/2018] [Indexed: 05/22/2023]
Abstract
Air pollutants especially polyaromatic hydrocarbons pose countless threats to the environment. This issue demands for an effective phytoremediation technology. In this study we report the beneficial interactions of Clitoria ternatea and its plant growth promoting endophytic bacteria Bacillus cereus ERBP by inoculating it for the remediation of 5 ppm airborne ethylbenzene (EB). The percentage efficiency for ethylbenzene removal among B. cereus ERBP inoculated and non-inoculated sterile and natural C. ternatea has also been determined. The inoculation of B. cereus ERBP has significantly increased EB removal efficiency of both sterile and natural C. ternatea. The inoculated natural C. ternatea seedlings showed 100% removal efficiency within 84 h for the aforementioned pollutant compared with the sterile inoculated C. ternatea seedlings (108 h). The degradation of EB by C. ternatea seedlings with and without B. cereus ERBP was assessed by measuring the intermediates of EB including 1-phenylethanol, acetophenon, benzaldehyde and benzoic acid. In addition, cytochrome P450s monooxygenase (CYP83D1) and dehydrogenases (LOC100783159) involved in the oxidation of hydrocarbons are well reported for their bio catalytic activities under xenobiotic stress conditions. Hence, the co-effect of the native endophyte B. cereus ERBP inoculation and EB exposure on the expression level of CYP83D1 and dehydrogenase were also determined. The targeted genes CYP83D1and dehydrogenases have shown an increased expression level under the 5 ppm of EB exposure enabling C. ternatea to withstand and remediate the pollutant.
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Affiliation(s)
- Zubaida Daudzai
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Chairat Treesubsuntorn
- Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Paitip Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand.
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21
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Wang R, Tai Y, Wan X, Ruan W, Man Y, Wang J, Yang Y, Yang Y. Enhanced removal of Microcystis bloom and microcystin-LR using microcosm constructed wetlands with bioaugmentation of degrading bacteria. CHEMOSPHERE 2018; 210:29-37. [PMID: 29980069 DOI: 10.1016/j.chemosphere.2018.06.140] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 06/20/2018] [Accepted: 06/22/2018] [Indexed: 06/08/2023]
Abstract
The prevalence of cyanobacterial bloom (Cyano-bloom) and hepatotoxic microcystin (MC) pollution caused by eutrophication poses serious problems to aquatic ecosystems and public health. However, conventional water treatment technologies are inefficient for removing cyanotoxins. In this study, the performance of microcosm constructed wetlands (CWs) in the removal of Cyano-bloom, microcystin-LR (MC-LR), and nutrients was investigated following repeated loading of pollutants. The effects of plant and bioaugmentation of selected MC-LR degrading bacteria on removal efficiency, degrading gene mlrA abundance, and bacterial community structure were examined. More than 90% of the MC-LR and chlorophyll-a was eliminated by CWs after 3 d of hydraulic retention time (HRT) without a lag phase. No significant differences between planted and unplanted CWs were found in the MC-LR and Cyano-bloom removal and mlrA gene abundance. Nevertheless, the plants improved nutrient removal to reduce eutrophication. Bioaugmentation markedly enhanced the degradation of MC-LR from 16.7 μg L-1 to below the threshold value within 12 h, which could help shorten the HRT of CWs by increasing functional MC-LR degrading bacteria. In the soil of CWs, the following six bacterial genera with MC-LR-degrading potential were found: Sphingopyxis, Methylotenera, Pseudomonas, Methylosinus, Novosphingobium, and Sphingomonas. Among them, the first three also significantly proliferated in CWs with bioaugmentation during MC-LR degradation, indicating their high adaptability and MC-LR removal contribution. These results suggested that CWs could provide suitable conditions for MC-LR degrading microorganism proliferation, and CWs with bioaugmentation could be effective and practical measures for the remediation of eutrophication and MC pollution.
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Affiliation(s)
- Rui Wang
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Yiping Tai
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Xiang Wan
- Nanjing Institute of Geography and Limnology, The Chinese Academy of Sciences, Nanjing 210008, China
| | - Weifeng Ruan
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Ying Man
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Jiaxi Wang
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Yufen Yang
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Yang Yang
- Institute of Hydrobiology, Jinan University, Guangzhou 510632, China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, China.
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22
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Suyamud B, Thiravetyan P, Panyapinyopol B, Inthorn D. Dracaena sanderiana endophytic bacteria interactions: Effect of endophyte inoculation on bisphenol A removal. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 157:318-326. [PMID: 29627416 DOI: 10.1016/j.ecoenv.2018.03.066] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Revised: 02/28/2018] [Accepted: 03/23/2018] [Indexed: 05/18/2023]
Abstract
Bisphenol A (BPA) is one of the most abundant endocrine-disrupting compounds which is found in the aquatic environment. However, actual knowledge regarding the effect of plant-bacteria interactions on enhancing BPA removal is still lacking. In the present study, Dracaena sanderiana endophytic bacteria interactions were investigated to evaluate the effect of bacterial inoculation on BPA removal under hydroponic conditions. Two plant growth-promoting (PGP) bacterial strains, Bacillus thuringiensis and Pantoea dispersa, which have high BPA tolerance and can utilize BPA for growth, were used as plant inocula. P. dispersa-inoculated plants showed the highest BPA removal efficiency at 92.32 ± 1.23% compared to other inoculated and non-inoculated plants. This was due to a higher population of the endophytic inoculum within the plant tissues which resulted in maintained levels of indole-3-acetic acid (IAA) for the plant's physiological needs and lower levels of reactive oxygen species (ROS). In contrast, B. thuringiensis-inoculated plants had a lower BPA removal efficiency. However, individual B. thuringiensis possessed a significantly higher BPA removal efficiency compared to P. dispersa. This study provides convincing evidence that not all PGP endophytic bacteria-plant interactions could improve the BPA removal efficiency. Different inocula and inoculation times should be investigated before using plant inoculation to enhance phytoremediation.
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Affiliation(s)
- B Suyamud
- Department of Sanitary Engineering, Faculty of Public Health, Mahidol University, Bangkok 10400, Thailand
| | - P Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - B Panyapinyopol
- Department of Sanitary Engineering, Faculty of Public Health, Mahidol University, Bangkok 10400, Thailand; Center of Excellence on Environmental Health and Toxicology (EHT), CHE, Ministry of Education, Bangkok, Thailand
| | - D Inthorn
- Center of Excellence on Environmental Health and Toxicology (EHT), CHE, Ministry of Education, Bangkok, Thailand; Department of Environmental Health Sciences, Faculty of Public Health, Mahidol University, Bangkok 10400, Thailand.
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Ajaero C, Peru KM, Simair M, Friesen V, O'Sullivan G, Hughes SA, McMartin DW, Headley JV. Fate and behavior of oil sands naphthenic acids in a pilot-scale treatment wetland as characterized by negative-ion electrospray ionization Orbitrap mass spectrometry. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 631-632:829-839. [PMID: 29727993 DOI: 10.1016/j.scitotenv.2018.03.079] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Revised: 03/07/2018] [Accepted: 03/07/2018] [Indexed: 05/24/2023]
Abstract
Large volumes of oil sands process-affected water (OSPW) are generated during the extraction of bitumen from oil sands in the Athabasca region of northeastern Alberta, Canada. As part of the development of treatment technologies, molecular characterization of naphthenic acids (NAs) and naphthenic acid fraction compounds (NAFC) in wetlands is a topic of research to better understand their fate and behavior in aquatic environments. Reported here is the application of high-resolution negative-ion electrospray Orbitrap-mass spectrometry for molecular characterization of NAs and NAFCs in a non-aerated constructed treatment wetland. The effectiveness of the wetlands to remove OSPW-NAs and NAFCs was evaluated by monitoring the changes in distributions of NAFC compounds in the untreated sample and non-aerated treatment system. After correction for measured evapotranspiration, the removal rate of the classical NAs followed approximately first-order kinetics, with higher rates observed for structures with relatively higher number of carbon atoms. These findings indicate that constructed wetland treatment is a viable method for removal of classical NAs in OSPW. Work is underway to evaluate the effects of wetland design on water quality improvement, preferential removal of different NAFC species, and reduction in toxicity.
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Affiliation(s)
- Chukwuemeka Ajaero
- Environmental Systems Engineering, University of Regina, Regina, Saskatchewan, 3737 Wascana Parkway, S4S 0A2, Canada; Watershed Hydrology & Ecology Research Division, Water Science & Technology Directorate, Environment & Climate Change Canada, 11 Innovation Boulevard, Saskatoon, Saskatchewan S7N 3H5, Canada
| | - Kerry M Peru
- Watershed Hydrology & Ecology Research Division, Water Science & Technology Directorate, Environment & Climate Change Canada, 11 Innovation Boulevard, Saskatoon, Saskatchewan S7N 3H5, Canada
| | - Monique Simair
- Contango Strategies Limited, 15-410 Downey Road, Saskatoon, Saskatchewan S7N 4N1, Canada
| | - Vanessa Friesen
- Contango Strategies Limited, 15-410 Downey Road, Saskatoon, Saskatchewan S7N 4N1, Canada
| | - Gwen O'Sullivan
- Department of Earth & Environmental Science, Mount Royal University, 4825 Mount Royal Gate SW, Calgary, AB T3E 6K6, Canada
| | - Sarah A Hughes
- Shell Health - Americas, One Shell Plaza, 910 Louisiana, Houston, TX 77002, USA
| | - Dena W McMartin
- Environmental Systems Engineering, University of Regina, Regina, Saskatchewan, 3737 Wascana Parkway, S4S 0A2, Canada; Department of Civil, Geological and Environmental Engineering, 57 Campus Drive, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9, Canada.
| | - John V Headley
- Watershed Hydrology & Ecology Research Division, Water Science & Technology Directorate, Environment & Climate Change Canada, 11 Innovation Boulevard, Saskatoon, Saskatchewan S7N 3H5, Canada
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Saleem H, Rehman K, Arslan M, Afzal M. Enhanced degradation of phenol in floating treatment wetlands by plant-bacterial synergism. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2018; 20:692-698. [PMID: 29723048 DOI: 10.1080/15226514.2017.1413334] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Phenol is a commonly found organic pollutant in industrial wastewaters. Its ecotoxicological significance is well known and, therefore, the compound is often required to be removed prior to discharge. In this study, plant-bacterial synergism was established in floating treatment wetlands (FTWs) in an attempt to maximize the removal of phenol from contaminated water. A common wetland plant, Typha domingensis, was vegetated on a floating mat and augmented with three phenol-degrading bacterial strains, Acinetobacter lwofii ACRH76, Bacillus cereus LORH97, and Pseudomonas sp. LCRH90, to develop FTWs for the remediation of water contaminated with phenol. All of the strains are known to have phenol-reducing properties, and grow well in FTWs. Results showed that T. domingensis was able to remove a small amount of phenol from the contaminated water; however, bacterial augmentation enhanced the removal potential significantly, i.e., 0.146 g/m2/day vs. 0.166 g/m2/day, respectively. Plant biomass also increased in the presence of bacterial consortia; and inoculated bacteria displayed successful colonization/survival in the rhizosphere, root interior and shoot interior of the plant. Similarly, highest reduction in chemical oxygen demand (COD), biochemical oxygen demand (BOD5), and total organic carbon (TOC) was achieved by the combined application of plants and bacteria. The study demonstrates that the plant-bacterial synergism in a FTW may be a more effective approach for the remediation of phenol-contaminated water.
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Affiliation(s)
- Hamna Saleem
- a Soil and Environmental Biotechnology Division , National Institute for Biotechnology and Genetic Engineering (NIBGE) , Faisalabad , Pakistan
- b Institute of Molecular Biology and Biotechnology, The University of Lahore , Lahore , Pakistan
| | - Khadeeja Rehman
- a Soil and Environmental Biotechnology Division , National Institute for Biotechnology and Genetic Engineering (NIBGE) , Faisalabad , Pakistan
| | - Muhammad Arslan
- a Soil and Environmental Biotechnology Division , National Institute for Biotechnology and Genetic Engineering (NIBGE) , Faisalabad , Pakistan
- c Department of Environmental Biotechnology , Helmholtz Centre for Environmental Research - UFZ , Leipzig , Germany
| | - Muhammad Afzal
- a Soil and Environmental Biotechnology Division , National Institute for Biotechnology and Genetic Engineering (NIBGE) , Faisalabad , Pakistan
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Yamaguchi T, Nakamura S, Hatamoto M, Tamura E, Tanikawa D, Kawakami S, Nakamura A, Kato K, Nagano A, Yamaguchi T. A novel approach for toluene gas treatment using a downflow hanging sponge reactor. Appl Microbiol Biotechnol 2018; 102:5625-5634. [DOI: 10.1007/s00253-018-8933-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 03/06/2018] [Accepted: 03/09/2018] [Indexed: 10/17/2022]
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Furlan JPR, Stehling EG. High-level of resistance to β-lactam and presence of β-lactamases encoding genes in Ochrobactrum sp. and Achromobacter sp. isolated from soil. J Glob Antimicrob Resist 2017; 11:133-137. [PMID: 29111479 DOI: 10.1016/j.jgar.2017.10.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Revised: 09/04/2017] [Accepted: 10/13/2017] [Indexed: 11/25/2022] Open
Abstract
OBJECTIVES Bacteria belonging to the genera Ochrobactrum and Achromobacter are bacteria considered opportunistic, causing infections mainly in immunocompromised patients. β-lactamases are the main cause of resistance to β-lactam antibiotics. This study aimed to investigate the antimicrobial resistance profile and the presence of β-lactamases encoding genes in Ochrobactrum sp. and Achromobacter sp. isolated from Brazilian soils. METHODS Soil samples from the five regions of Brazil were collected for the isolation of bacteria, which were identified molecularly and then, the minimum inhibitory concentration and detection of β-lactamases encoding genes were performed. RESULTS High-level of resistance to β-lactam antibiotics and different β-lactamases encoding genes were found (blaCTX-M-Gp1, blaSHV, blaOXA-1-like and blaKPC), including the first report of the presence of blaKPC in bacteria belonging to the genera Ochrobactrum and Achromobacter. CONCLUSION The results showed that the bacteria from this study, belonging to genera Ochrobactrum and Achromobacter isolated from soil, harbor different β-lactamases encoding genes and can act as a reservoir of these genes.
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Affiliation(s)
- João Pedro Rueda Furlan
- Departamento de Análises Clínicas, Toxicológicas e Bromatológicas, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo (USP), Ribeirão Preto, Brazil
| | - Eliana Guedes Stehling
- Departamento de Análises Clínicas, Toxicológicas e Bromatológicas, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo (USP), Ribeirão Preto, Brazil.
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27
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Feng F, Ge J, Li Y, He S, Zhong J, Liu X, Yu X. Enhanced degradation of chlorpyrifos in rice (Oryza sativa L.) by five strains of endophytic bacteria and their plant growth promotional ability. CHEMOSPHERE 2017. [PMID: 28622646 DOI: 10.1016/j.chemosphere.2017.05.178] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Endophytic bacteria reside in plant tissues, such as roots, stems, leaves and seeds. Most of them can stimulate plant growth or alleviate phytotoxicity of pollutants. There are handful species with dual functions stimulating plant growth and degrading pollutants have been reported. Five endophytic bacteria were isolated from chlorpyrifos (CP) treated rice plants and identified as Pseudomonas aeruginosa strain RRA, Bacillus megaterium strain RRB, Sphingobacterium siyangensis strain RSA, Stenotrophomonas pavanii strain RSB and Curtobacterium plantarum strain RSC according to morphological characteristics, physiological and biochemical tests, and 16S rDNA phylogeny. All of them possessed some plant growth promotional traits, including indole acetic acid and siderophore production, secretion of phosphate solubilization and 1-aminocyclopropane-1-carboxylate deaminase. The bacteria were marked with the green fluorescent protein (gfp) gene and successfully colonized into rice plants. All isolates were able to degrade CP in vitro and in vivo. The five isolates degraded more than 90% of CP in 24 h when the initial concentration was lower than 5 mg/L. CP degradation was significantly enhanced in the infested rice plants and rice grains. The final CP residual was reduced up to 80% in the infested rice grains compared to the controls. The results indicate that these isolates are promising bio-inoculants for the removal or detoxification of CP residues in rice plants and grains.
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Affiliation(s)
- Fayun Feng
- Key Laboratory of Food Quality and Safety of Jiangsu Province - State Key Laboratory Breeding Base/Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
| | - Jing Ge
- Key Laboratory of Food Quality and Safety of Jiangsu Province - State Key Laboratory Breeding Base/Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China; Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Yisong Li
- Department of Plant Protection, Agricultural College, Shihezi University, Xinjiang, 832000, China
| | - Shuang He
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China; Department of Plant Protection, Agricultural College, Shihezi University, Xinjiang, 832000, China
| | - Jianfeng Zhong
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Xianjing Liu
- Key Laboratory of Food Quality and Safety of Jiangsu Province - State Key Laboratory Breeding Base/Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
| | - Xiangyang Yu
- Key Laboratory of Food Quality and Safety of Jiangsu Province - State Key Laboratory Breeding Base/Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China; Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China.
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28
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Gorito AM, Ribeiro AR, Almeida CMR, Silva AMT. A review on the application of constructed wetlands for the removal of priority substances and contaminants of emerging concern listed in recently launched EU legislation. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 227:428-443. [PMID: 28486186 DOI: 10.1016/j.envpol.2017.04.060] [Citation(s) in RCA: 98] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 02/18/2017] [Accepted: 04/08/2017] [Indexed: 06/07/2023]
Abstract
The presence of organic pollutants in the aquatic environment, usually found at trace concentrations (i.e., between ng L-1 and μg L-1 or even lower, known as micropollutants), has been highlighted in recent decades as a worldwide environmental concern due to their difficult elimination by conventional water and wastewater treatment processes. The relevant information on constructed wetlands (CWs) and their application for the removal of a specific group of pollutants, 41 organic priority substances/classes of substances (PSs) and 8 certain other substances with environmental quality standards (EQS) listed in Directive 2013/39/EU as well as 17 contaminants of emerging concern (CECs) of the Watch List of Decision 2015/495/EU, is herein reviewed. Studies were found for 24 PSs and 2 other substances with EQS: octylphenol, nonylphenol, perfluorooctane sulfonic acid, di(2-ethylhexyl)phthalate, trichloromethane, dichloromethane, 1,2-dichloroethane, pentachlorobenzene, benzene, polychlorinated dibenzo-p-dioxins, naphthalene, fluoranthene, trifluralin, alachlor, isoproturon, diuron, tributyltin compounds, simazine, atrazine, chlorpyrifos (chlorpyrifos-ethyl), chlorfenvinphos, hexachlorobenzene, pentachlorophenol, endosulfan, dichlorodiphenyltrichloroethane (or DDT) and dieldrin. A few reports were also published for 8 CECs: imidacloprid, erythromycin, clarithromycin, azithromycin, diclofenac, estrone, 17-beta-estradiol and 17-alpha-ethinylestradiol. No references were found for the other 17 PSs, 6 certain other substances with EQS and 9 CECs listed in EU legislation.
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Affiliation(s)
- Ana M Gorito
- Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials (LSRE-LCM), Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Ana R Ribeiro
- Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials (LSRE-LCM), Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - C M R Almeida
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Universidade do Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Matosinhos, Portugal.
| | - Adrián M T Silva
- Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials (LSRE-LCM), Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal.
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29
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Pawlik M, Cania B, Thijs S, Vangronsveld J, Piotrowska-Seget Z. Hydrocarbon degradation potential and plant growth-promoting activity of culturable endophytic bacteria of Lotus corniculatus and Oenothera biennis from a long-term polluted site. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:19640-19652. [PMID: 28681302 PMCID: PMC5570797 DOI: 10.1007/s11356-017-9496-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2017] [Accepted: 06/08/2017] [Indexed: 05/15/2023]
Abstract
Many endophytic bacteria exert beneficial effects on their host, but still little is known about the bacteria associated with plants growing in areas heavily polluted by hydrocarbons. The aim of the study was characterization of culturable hydrocarbon-degrading endophytic bacteria associated with Lotus corniculatus L. and Oenothera biennis L. collected in long-term petroleum hydrocarbon-polluted site using culture-dependent and molecular approaches. A total of 26 hydrocarbon-degrading endophytes from these plants were isolated. Phylogenetic analyses classified the isolates into the phyla Proteobacteria and Actinobacteria. The majority of strains belonged to the genera Rhizobium, Pseudomonas, Stenotrophomonas, and Rhodococcus. More than 90% of the isolates could grow on medium with diesel oil, approximately 20% could use n-hexadecane as a sole carbon and energy source. PCR analysis revealed that 40% of the isolates possessed the P450 gene encoding for cytochrome P450-type alkane hydroxylase (CYP153). In in vitro tests, all endophytic strains demonstrated a wide range of plant growth-promoting traits such as production of indole-3-acetic acid, hydrogen cyanide, siderophores, and phosphate solubilization. More than 40% of the bacteria carried the gene encoding for the 1-aminocyclopropane-1-carboxylic acid deaminase (acdS). Our study shows that the diversity of endophytic bacterial communities in tested plants was different. The results revealed also that the investigated plants were colonized by endophytic bacteria possessing plant growth-promoting features and a clear potential to degrade hydrocarbons. The properties of isolated endophytes indicate that they have the high potential to improve phytoremediation of petroleum hydrocarbon-polluted soils.
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Affiliation(s)
- Małgorzata Pawlik
- Department of Microbiology, University of Silesia, Katowice, Poland.
| | - Barbara Cania
- Research Unit Environmental Genomics, Helmholtz Zentrum München, Munich, Germany
| | - Sofie Thijs
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
| | - Jaco Vangronsveld
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
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Wei X, Lyu S, Yu Y, Wang Z, Liu H, Pan D, Chen J. Phylloremediation of Air Pollutants: Exploiting the Potential of Plant Leaves and Leaf-Associated Microbes. FRONTIERS IN PLANT SCIENCE 2017; 8:1318. [PMID: 28804491 PMCID: PMC5532450 DOI: 10.3389/fpls.2017.01318] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 07/12/2017] [Indexed: 05/22/2023]
Abstract
Air pollution is air contaminated by anthropogenic or naturally occurring substances in high concentrations for a prolonged time, resulting in adverse effects on human comfort and health as well as on ecosystems. Major air pollutants include particulate matters (PMs), ground-level ozone (O3), sulfur dioxide (SO2), nitrogen dioxides (NO2), and volatile organic compounds (VOCs). During the last three decades, air has become increasingly polluted in countries like China and India due to rapid economic growth accompanied by increased energy consumption. Various policies, regulations, and technologies have been brought together for remediation of air pollution, but the air still remains polluted. In this review, we direct attention to bioremediation of air pollutants by exploiting the potentials of plant leaves and leaf-associated microbes. The aerial surfaces of plants, particularly leaves, are estimated to sum up to 4 × 108 km2 on the earth and are also home for up to 1026 bacterial cells. Plant leaves are able to adsorb or absorb air pollutants, and habituated microbes on leaf surface and in leaves (endophytes) are reported to be able to biodegrade or transform pollutants into less or nontoxic molecules, but their potentials for air remediation has been largely unexplored. With advances in omics technologies, molecular mechanisms underlying plant leaves and leaf associated microbes in reduction of air pollutants will be deeply examined, which will provide theoretical bases for developing leaf-based remediation technologies or phylloremediation for mitigating pollutants in the air.
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Affiliation(s)
- Xiangying Wei
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
| | - Shiheng Lyu
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Ying Yu
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Zonghua Wang
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Hong Liu
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- College of Resource and Environmental Science, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Dongming Pan
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Jianjun Chen
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
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Feng F, Ge J, Li Y, Cheng J, Zhong J, Yu X. Isolation, Colonization, and Chlorpyrifos Degradation Mediation of the Endophytic Bacterium Sphingomonas Strain HJY in Chinese Chives (Allium tuberosum). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:1131-1138. [PMID: 28103027 DOI: 10.1021/acs.jafc.6b05283] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The endophyte-plant interaction can benefit the host in many different ways. An endophytic bacterium strain (HJY) capable of degrading chlorpyrifos (CP) was isolated from Chinese chives (Allium tuberosum Rottl. ex Spreng). The isolated bacterium HJY classified as Sphingomonas sp. strain HJY could use CP as the sole carbon source. After being marked with the gfp gene, the colonization and distribution of strain HJY-gfp were directly observed in different tissues of Chinese chives with a confocal laser scanning microscope. The inoculation of strain HJY-gfp in Chinese chives resulted in a higher degradation of CP inside the plants than in uninoculated plants. With drench application, up to 70 and 66% of CP were removed from shoots and roots of inoculated Chinese chives, respectively. Moreover, up to 75% of CP was removed from the soil containing plants inoculated with HJY-gfp. With foliage application, the applied concentration of chlorpyrifos affected the degradation performance of strain HJY in Chinese chives. Significant differences were observed only between inoculated and uninoculated Chinese chives with the low applied concentration of CP. Together, other than natural endophyte-assisted plant protection for food safety, the interaction of HJY and plant may be also a promising strategy for in situ bioremediation of soil contaminated with CP.
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Affiliation(s)
- Fayun Feng
- Key Laboratory of Food Quality and Safety of Jiangsu Province- State Key Laboratory Breeding Base , 50 Zhongling Street, Nanjing 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences , 50 Zhongling Street, Nanjing 210014, China
| | - Jing Ge
- Key Laboratory of Food Quality and Safety of Jiangsu Province- State Key Laboratory Breeding Base , 50 Zhongling Street, Nanjing 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences , 50 Zhongling Street, Nanjing 210014, China
| | - Yisong Li
- Department of Plant Protection, Agricultural College, Shihezi University , Xinjiang 832000, China
| | - Jinjin Cheng
- Key Laboratory of Food Quality and Safety of Jiangsu Province- State Key Laboratory Breeding Base , 50 Zhongling Street, Nanjing 210014, China
| | - Jianfeng Zhong
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences , 50 Zhongling Street, Nanjing 210014, China
| | - Xiangyang Yu
- Key Laboratory of Food Quality and Safety of Jiangsu Province- State Key Laboratory Breeding Base , 50 Zhongling Street, Nanjing 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences , 50 Zhongling Street, Nanjing 210014, China
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Syranidou E, Christofilopoulos S, Politi M, Weyens N, Venieri D, Vangronsveld J, Kalogerakis N. Bisphenol-A removal by the halophyte Juncus acutus in a phytoremediation pilot: Characterization and potential role of the endophytic community. JOURNAL OF HAZARDOUS MATERIALS 2017; 323:350-358. [PMID: 27321745 DOI: 10.1016/j.jhazmat.2016.05.034] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Revised: 05/09/2016] [Accepted: 05/10/2016] [Indexed: 06/06/2023]
Abstract
A phytoremediation pilot emulating a shallow aquifer planted with Juncus acutus showed to be effective for remediating Bisphenol-A (BPA) contaminated groundwater. Biostimulation with root exudates, low molecular weight organic acids, of J. acutus did not improve BPA-degradation rates. Furthermore, the endophytic bacterial community of J. acutus was isolated and characterized. Many strains were found to possess increased tolerance to metals such as Zn, Ni, Pb and Cd. Moreover, several endophytic bacterial strains tolerated and even used BPA and/or two antibiotics (ciprofloxacin and sulfamethoxazole) as a sole carbon source. Our results demonstrate that the cultivable bacterial endophytic community of J. acutus is able to use organic contaminants as carbon sources, tolerates metals and is equipped with plant-growth promoting traits. Therefore, J. acutus has potential to be exploited in constructed wetlands when co-contamination is one of the restricting factors.
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Affiliation(s)
- Evdokia Syranidou
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece; Hasselt University, Centre for Environmental Sciences, Agoralaan, Building D, B-3590 Diepenbeek, Belgium
| | - Stavros Christofilopoulos
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece
| | - Maria Politi
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece
| | - Nele Weyens
- Hasselt University, Centre for Environmental Sciences, Agoralaan, Building D, B-3590 Diepenbeek, Belgium
| | - Danae Venieri
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece
| | - Jaco Vangronsveld
- Hasselt University, Centre for Environmental Sciences, Agoralaan, Building D, B-3590 Diepenbeek, Belgium
| | - Nicolas Kalogerakis
- Technical University of Crete, School of Environmental Engineering, Polytechneioupolis, Chania 73100, Greece.
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Khaksar G, Treesubsuntorn C, Thiravetyan P. Euphorbia milii-native bacteria interactions under airborne formaldehyde stress: Effect of epiphyte and endophyte inoculation in relation to IAA, ethylene and ROS levels. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 111:284-294. [PMID: 27987473 DOI: 10.1016/j.plaphy.2016.12.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Accepted: 12/06/2016] [Indexed: 06/06/2023]
Abstract
Better understanding of plant-bacteria interactions under stress is of the prime importance for enhancing airborne pollutant phytoremediation. No studies have investigated plant-epiphyte interactions compared to plant-endophyte interactions under airborne formaldehyde stress in terms of plant Indole-3-acetic acid (IAA), ethylene, reactive oxygen species (ROS) levels and pollutant removal efficiency. Euphorbia milii was inoculated with native plant growth-promoting (PGP) endophytic and epiphytic isolates individually to investigate plant-endophyte compared to plant-epiphyte interactions under continuous formaldehyde fumigation. Under airborne formaldehyde stress, endophyte interacts with its host plant closely and provides higher levels of IAA which protected the plant against formaldehyde phytotoxicity by lowering intracellular ROS, ethylene levels and maintaining shoot epiphytic community; hence, higher pollutant removal. However, plant-epiphyte interactions could not provide enough IAA to confer protection against formaldehyde stress; thus, increased ROS and ethylene levels, large decrease in shoot epiphytic population and lower pollutant removal although epiphyte contacts with airborne pollutant directly (has greater access to gaseous formaldehyde). Endophyte-inoculated plant synthesized more tryptophan as a signaling molecule for its associated bacteria to produce IAA compared to the epiphyte-inoculated one. Under stress, PGP endophyte interacts with its host closely; thus, better protection against stress and higher pollutant removal compared to epiphyte which has limited interactions with the host plant; hence, lower pollutant removal.
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Affiliation(s)
- Gholamreza Khaksar
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand.
| | - Chairat Treesubsuntorn
- Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand.
| | - Paitip Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand.
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Dombrowski JE, Hollenbeck VG, Martin RC. Isolation and Identification of Bacterial Endophytes from Grasses along the Oregon Coast. ACTA ACUST UNITED AC 2017. [DOI: 10.4236/ajps.2017.83040] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Khaksar G, Treesubsuntorn C, Thiravetyan P. Effect of endophytic Bacillus cereus ERBP inoculation into non-native host: Potentials and challenges for airborne formaldehyde removal. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 107:326-336. [PMID: 27362296 DOI: 10.1016/j.plaphy.2016.06.020] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2016] [Revised: 06/05/2016] [Accepted: 06/14/2016] [Indexed: 06/06/2023]
Abstract
Phytoremediation could be a cost-effective, environmentally friendly approach for the treatment of indoor air. However, some drawbacks still dispute the expediency of phytotechnology. Our objectives were to investigate the competency of plant growth-promoting (PGP) endophytic Bacillus cereus ERBP (endophyte root blue pea), isolated from the root of Clitoria ternatea, to colonize and stabilize within Zamioculcas zamiifolia and Euphorbia milii as non-native hosts without causing any disease or stress symptoms. Moreover, the impact of B. cereus ERBP on the natural shoot endophytic community and for the airborne formaldehyde removal capability of non-native hosts was assessed. Non-native Z. zamiifolia was effectively inoculated with B. cereus ERBP through soil as the most efficient method of endophyte inoculation. Denaturing gradient gel electrophoresis profiling of the shoot endophytic community verified the colonization and stability of B. cereus ERBP within its non-native host during a 20-d fumigation period without interfering with the natural shoot endophytic diversity of Z. zamiifolia. B. cereus ERBP conferred full protection to its non-native host against formaldehyde phytotoxicity and enhanced airborne formaldehyde removal of Z. zamiifolia whereas non-inoculated plants suffered from formaldehyde phytotoxicity because their natural shoot endophytic community was detrimentally affected by formaldehyde. In contrast, B. cereus ERBP inoculation into non-native E. milii deteriorated airborne formaldehyde removal of the non-native host (compared to a non-inoculated one) as B. cereus ERBP interfered with natural shoot endophytic community of E. milii, which caused stress symptoms and stimulated ethylene biosynthesis. Non-native host inoculation with PGP B. cereus ERBP could bear potentials and challenges for airborne formaldehyde removal.
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Affiliation(s)
- Gholamreza Khaksar
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand
| | - Chairat Treesubsuntorn
- Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand
| | - Paitip Thiravetyan
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok, 10150, Thailand.
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Khaksar G, Siswanto D, Treesubsuntorn C, Thiravetyan P. Euphorbia milii-Endophytic Bacteria Interactions Affect Hormonal Levels of the Native Host Differently Under Various Airborne Pollutants. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2016; 29:663-673. [PMID: 27447337 DOI: 10.1094/mpmi-06-16-0117-r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
This study was conducted to assess the effect of plant-native endophytic bacteria interactions on indole-3-acetic acid (IAA), ethylene levels, and hormonal balance of Euphorbia milii under different airborne pollutants. IAA levels and airborne formaldehyde removal by E. milii enhanced when inoculated with endophytic isolates. However, one isolate, designated as root endophyte 4, with the highest levels of IAA production individually, declined gaseous formaldehyde removal of plant, since it disturbed hormonal balance of E. milii, leading to IAA levels higher than physiological concentrations, which stimulated ethylene biosynthesis and stomatal closure under light conditions. However, plant-root endophyte 4 interactions favored airborne benzene removal, since benzene was more phytotoxic and the plant needed more IAA to protect against benzene phytotoxicity. As trimethylamine (TMA) was not toxic, it did not affect plant-endophyte interactions. Therefore, IAA levels of root endophyte 4-inoculated E. milii was not significantly different from a noninoculated one. Under mixed-pollutant stress (formaldehyde, benzene, TMA), root endophyte 4-inoculated E. milii removed benzene at the lowest rate, since benzene was the most phytotoxic pollutant with the greatest molecular mass. However, TMA (with greater molecular mass) was removed faster than formaldehyde due to higher phytotoxicity of formaldehyde. Plant-endophyte interactions were affected differently under various airborne pollutants.
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Affiliation(s)
- Gholamreza Khaksar
- 1 School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Dian Siswanto
- 1 School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
- 2 Faculty of Mathematics and Natural Sciences, Brawijaya University, Malang 65145, Indonesia; and
| | - Chairat Treesubsuntorn
- 3 Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi
| | - Paitip Thiravetyan
- 1 School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
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Mathew DC, Ho YN, Gicana RG, Mathew GM, Chien MC, Huang CC. A rhizosphere-associated symbiont, Photobacterium spp. strain MELD1, and its targeted synergistic activity for phytoprotection against mercury. PLoS One 2015; 10:e0121178. [PMID: 25816328 PMCID: PMC4376707 DOI: 10.1371/journal.pone.0121178] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Accepted: 01/28/2015] [Indexed: 11/24/2022] Open
Abstract
Though heavy metal such as mercury is toxic to plants and microorganisms, the synergistic activity between them may offer benefit for surviving. In this study, a mercury-reducing bacterium, Photobacterium spp. strain MELD1, with an MIC of 33 mg x kg(-1) mercury was isolated from a severely mercury and dioxin contaminated rhizosphere soil of reed (Phragmites australis). While the whole genome sequencing of MELD1 confirmed the presence of a mer operon, the mercury reductase MerA gene showed 99% sequence identity to Vibrio shilloni AK1 and implicates its route resulted from the event of horizontal gene transfer. The efficiency of MELD1 to vaporize mercury (25 mg x kg(-1), 24 h) and its tolerance to toxic metals and xenobiotics such as lead, cadmium, pentachlorophenol, pentachloroethylene, 3-chlorobenzoic acid, 2,3,7,8-tetrachlorodibenzo-p-dioxin and 1,2,3,7,8,9-hexachlorodibenzo-p-dioxin is promising. Combination of a long yard bean (Vigna unguiculata ssp. Sesquipedalis) and strain MELD1 proved beneficial in the phytoprotection of mercury in vivo. The effect of mercury (Hg) on growth, distribution and tolerance was examined in root, shoot, leaves and pod of yard long bean with and without the inoculation of strain MELD1. The model plant inoculated with MELD1 had significant increases in biomass, root length, seed number, and increased mercury uptake limited to roots. Biolog plate assay were used to assess the sole-carbon source utilization pattern of the isolate and Indole-3-acetic acid (IAA) productivity was analyzed to examine if the strain could contribute to plant growth. The results of this study suggest that, as a rhizosphere-associated symbiont, the synergistic activity between the plant and MELD1 can improve the efficiency for phytoprotection, phytostabilization and phytoremediation of mercury.
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Affiliation(s)
- Dony Chacko Mathew
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan, R. O. C
| | - Ying-Ning Ho
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan, R. O. C
| | - Ronnie Gicaraya Gicana
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, R. O. C
| | - Gincy Marina Mathew
- School of Biosciences, Mar Athanasios College for Advanced Studies (MACFAST) BIOCAMPUS, Tiruvalla, Kerala, India
| | - Mei-Chieh Chien
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan, R. O. C
| | - Chieh-Chen Huang
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan, R. O. C
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Sauvêtre A, Schröder P. Uptake of carbamazepine by rhizomes and endophytic bacteria of Phragmites australis. FRONTIERS IN PLANT SCIENCE 2015; 6:83. [PMID: 25750647 PMCID: PMC4335274 DOI: 10.3389/fpls.2015.00083] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2014] [Accepted: 02/01/2015] [Indexed: 05/12/2023]
Abstract
Carbamazepine is an antiepileptic and mood-stabilizing drug which is used widely in Europe and North America. In the environment, it is found as a persistent and recalcitrant contaminant, being one of the most prominent hazardous pharmaceuticals and personal care products in effluents of wastewater treatment plants. Phragmites australis is one of the species with both, the highest potential of detoxification and phytoremediation. It has been used successfully in the treatment of industrial and municipal wastewater. Recently, the identification of endophytic microorganisms from different plant species growing in contaminated sites has provided a list of candidates which could be used as bio-inoculants for bioremediation of difficult compounds. In this study, Phragmites australis plants were exposed to 5 mg/L of carbamazepine. After 9 days the plants had removed 90% of the initial concentration. Endophytic bacteria were isolated from these plants and further characterized. Phylogenetic analysis based on 16S rDNA sequencing revealed that the majority of these isolates belong to three groups: Proteobacteria, Actinobacteria, and Bacteroidetes. Carbamazepine uptake and plant growth promoting (PGP) traits were analyzed among the isolates. Ninety percent of the isolates produce indole acetic acid (IAA) and all of them possess at least one of the PGP traits tested. One isolate identified as Chryseobacterium taeanense combines good carbamazepine uptake and all of the PGP traits. Rhizobium daejeonense can remove carbamazepine and produces 23 μg/mL of IAA. Diaphorobacter nitroreducens and Achromobacter mucicolens are suitable for carbamazepine removal while both, Pseudomonas veronii and Pseudomonas lini show high siderophore production and phosphate solubilization. Alone or in combination, these isolates might be applied as inoculates in constructed wetlands in order to enhance the phytoremediation of carbamazepine during wastewater treatment.
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Affiliation(s)
| | - Peter Schröder
- *Correspondence: Peter Schröder, Plant Endophyte Physiology, Research Unit Microbe–Plant Interactions, Helmholtz Zentrum München GmbH, German Research Center for Environmental Health, Ingolstädter Landstraße 1, D-85764, Neuherberg, Germany e-mail:
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Afzal M, Khan QM, Sessitsch A. Endophytic bacteria: prospects and applications for the phytoremediation of organic pollutants. CHEMOSPHERE 2014; 117:232-42. [PMID: 25078615 DOI: 10.1016/j.chemosphere.2014.06.078] [Citation(s) in RCA: 168] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2014] [Revised: 06/17/2014] [Accepted: 06/18/2014] [Indexed: 05/18/2023]
Abstract
Recently, there has been an increased effort to enhance the efficacy of phytoremediation of contaminated environments by exploiting plant-microbe interactions. The combined use of plants and endophytic bacteria is an emerging approach for the clean-up of soil and water polluted with organic compounds. In plant-endophyte partnerships, plants provide the habitat as well as nutrients to their associated endophytic bacteria. In response, endophytic bacteria with appropriate degradation pathways and metabolic activities enhance degradation of organic pollutants, and diminish phytotoxicity and evapotranspiration of organic pollutants. Moreover, endophytic bacteria possessing plant growth-promoting activities enhance the plant's adaptation and growth in soil and water contaminated with organic pollutants. Overall, the application of endophytic bacteria gives new insights into novel protocols to improve phytoremediation efficiency. However, successful application of plant-endophyte partnerships for the clean-up of an environment contaminated with organic compounds depends on the abundance and activity of the degrading endophyte in different plant compartments. Although many endophytic bacteria have the potential to degrade organic pollutants and improve plant growth, their contribution to enhance phytoremediation efficiency is still underestimated. A better knowledge of plant-endophyte interactions could be utilized to increase the remediation of polluted soil environments and to protect the foodstuff by decreasing agrochemical residues in food crops.
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Affiliation(s)
- Muhammad Afzal
- National Institute for Biotechnology and Genetic Engineering (NIBGE), P.O. Box 577, Jhang Road, Faisalabad, Pakistan.
| | - Qaiser M Khan
- National Institute for Biotechnology and Genetic Engineering (NIBGE), P.O. Box 577, Jhang Road, Faisalabad, Pakistan
| | - Angela Sessitsch
- AIT Austrian Institute of Technology GmbH, Bioresources Unit, 3430 Tulln, Austria
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Wittmann J, Dreiseikelmann B, Rohde C, Rohde M, Sikorski J. Isolation and characterization of numerous novel phages targeting diverse strains of the ubiquitous and opportunistic pathogen Achromobacter xylosoxidans. PLoS One 2014; 9:e86935. [PMID: 24466294 PMCID: PMC3899368 DOI: 10.1371/journal.pone.0086935] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Accepted: 12/19/2013] [Indexed: 11/19/2022] Open
Abstract
The clinical relevance of nosocomially acquired infections caused by multi-resistant Achromobacter strains is rapidly increasing. Here, a diverse set of 61 Achromobacter xylosoxidans strains was characterized by MultiLocus Sequence Typing and Phenotype MicroArray technology. The strains were further analyzed in regard to their susceptibility to 35 antibiotics and to 34 different and newly isolated bacteriophages from the environment. A large proportion of strains were resistant against numerous antibiotics such as cephalosporines, aminoglycosides and quinolones, whereas piperacillin-tazobactam, ticarcillin, mezlocillin and imipenem were still inhibitory. We also present the first expanded study on bacteriophages of the genus Achromobacter that has been so far a blank slate with respect to phage research. The phages were isolated mainly from several waste water treatment plants in Germany. Morphological analysis of all of these phages by electron microscopy revealed a broad diversity with different members of the order Caudovirales, including the families Siphoviridae, Myoviridae, and Podoviridae. A broad spectrum of different host ranges could be determined for several phages that lysed up to 24 different and in part highly antibiotic resistant strains. Molecular characterisation by DNA restriction analysis revealed that all phages contain linear double-stranded DNA. Their restriction patterns display distinct differences underlining their broad diversity.
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Affiliation(s)
- Johannes Wittmann
- Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Department of Microorganisms, Braunschweig, Germany
- * E-mail:
| | - Brigitte Dreiseikelmann
- Department of Microbiology/Genetechnology, Faculty of Biology, University of Bielefeld, Bielefeld, Germany
| | - Christine Rohde
- Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Department of Microorganisms, Braunschweig, Germany
| | - Manfred Rohde
- Helmholtz Centre for Infection Research, Department of Medical Microbiology, Central Facility for Microscopy, Braunschweig, Germany
| | - Johannes Sikorski
- Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Department of Microbial Ecology and Diversity Research, Braunschweig, Germany
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Ho YN, Hsieh JL, Huang CC. Construction of a plant-microbe phytoremediation system: combination of vetiver grass with a functional endophytic bacterium, Achromobacter xylosoxidans F3B, for aromatic pollutants removal. BIORESOURCE TECHNOLOGY 2013; 145:43-7. [PMID: 23591084 DOI: 10.1016/j.biortech.2013.02.051] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2012] [Revised: 02/12/2013] [Accepted: 02/17/2013] [Indexed: 05/02/2023]
Abstract
The endophytic bacterial strain Achromobacter xylosoxidans F3B, which was able to utilize aromatic compounds as a sole carbon source, was inoculated into vetiver grass in this study. A real-time PCR detection method has been developed for confirming the stability of F3B in plants and DGGE profiles were conducted for examining the diversity of endophytes during the remediation process. These results showed that the endophytic bacteria strain F3B could maintain a stable population in plant roots without largely interfering with the diversity of native endophytes. Furthermore, the strain F3B could protect plants against toluene stress and maintain chlorophyll content of leaves, and a 30% reduction of evapotranspiration through vetiver leaves was observed. Our results demonstrate the potential to improve phytoremediation of aromatic pollutants by inoculating functional endophytic bacterial strains.
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Affiliation(s)
- Ying-Ning Ho
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan, ROC
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Stępniewska Z, Kuźniar A. Endophytic microorganisms--promising applications in bioremediation of greenhouse gases. Appl Microbiol Biotechnol 2013; 97:9589-96. [PMID: 24048641 PMCID: PMC3825493 DOI: 10.1007/s00253-013-5235-9] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Revised: 09/01/2013] [Accepted: 09/03/2013] [Indexed: 12/13/2022]
Abstract
Bioremediation is a technique that uses microbial metabolism to remove pollutants. Various techniques and strategies of bioremediation (e.g., phytoremediation enhanced by endophytic microorganisms, rhizoremediation) can mainly be used to remove hazardous waste from the biosphere. During the last decade, this specific technique has emerged as a potential cleanup tool only for metal pollutants. This situation has changed recently as a possibility has appeared for bioremediation of other pollutants, for instance, volatile organic compounds, crude oils, and radionuclides. The mechanisms of bioremediation depend on the mobility, solubility, degradability, and bioavailability of contaminants. Biodegradation of pollutions is associated with microbial growth and metabolism, i.e., factors that have an impact on the process. Moreover, these factors have a great influence on degradation. As a result, recognition of natural microbial processes is indispensable for understanding the mechanisms of effective bioremediation. In this review, we have emphasized the occurrence of endophytic microorganisms and colonization of plants by endophytes. In addition, the role of enhanced bioremediation by endophytic bacteria and especially of phytoremediation is presented.
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Affiliation(s)
- Z Stępniewska
- Department of Biochemistry and Environmental Chemistry, The John Paul II Catholic University of Lublin, Ul. Konstantynów 1I, 20-708, Lublin, Poland
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Detection of Achromobacter xylosoxidans in hospital, domestic, and outdoor environmental samples and comparison with human clinical isolates. Appl Environ Microbiol 2013; 79:7142-9. [PMID: 24038696 DOI: 10.1128/aem.02293-13] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Achromobacter xylosoxidans is an aerobic nonfermentative Gram-negative rod considered an important emerging pathogen among cystic fibrosis (CF) patients worldwide and among immunocompromised patients. This increased prevalence remains unexplained, and to date no environmental reservoir has been identified. The aim of this study was to identify potential reservoirs of A. xylosoxidans in hospital, domestic, and outdoor environments and to compare the isolates with clinical ones. From 2011 to 2012, 339 samples were collected in Dijon's university hospital, in healthy volunteers' homes in the Dijon area, and in the outdoor environment in Burgundy (soil, water, mud, and plants). We designed a protocol to detect A. xylosoxidans in environmental samples based on a selective medium: MCXVAA (MacConkey agar supplemented with xylose, vancomycin, aztreonam, and amphotericin B). Susceptibility testing, genotypic analysis by pulsed-field gel electrophoresis, and blaOXA-114 sequencing were performed on the isolates. A total of 50 strains of A. xylosoxidans were detected in hospital (33 isolates), domestic (9 isolates), and outdoor (8 isolates) samples, mainly in hand washing sinks, showers, and water. Most of them were resistant to ciprofloxacin (49 strains). Genotypic analysis and blaOXA-114 sequencing revealed a wide diversity among the isolates, with 35 pulsotypes and 18 variants of oxacillinases. Interestingly, 10 isolates from hospital environment were clonally related to clinical isolates previously recovered from hospitalized patients, and one domestic isolate was identical to one recovered from a CF patient. These results indicate that A. xylosoxidans is commonly distributed in various environments and therefore that CF patients or immunocompromised patients are surrounded by these reservoirs.
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