The ecological quality status of the Bay of Seine and the Seine estuary: use of biotic indices

Disentangling the effect of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years

Coastal zones are biodiversity hotspots and deliver essential ecosystem functions and services, yet they are exposed to multiple and interacting anthropogenic and environmental constraints. The individual and cumulative effects of these constraints on benthic communities, a key component of coastal ecosystems, and their variability across space and time, remains to be thoroughly quantified to guide conservation actions. Here, we explored how the presence of biogenic habitats influences the response of benthic communities to natural and anthropogenic constraints. We investigated this effect in both intertidal and subtidal habitats exposed to different pressures. We used data collected in the North-East Atlantic over 15 years (2005-2019) as part of the REBENT monitoring program, covering 38 sites of bare sediments, intertidal seagrass beds and maerl beds. We collected a range of environmental variables and proxies of anthropogenic pressures and used variation and hierarchical partitioning with redundancy analyses to estimate their relative effect on macrobenthic communities. We used descriptors modeling spatial and temporal structures (dbMEMs) to explore the scale of their effects and potential missing predictors. The selected variables explained between 53 % and 64 % of macrobenthic β diversity depending on habitat and depth. Fishing pressures, sedimentary and hydrodynamics variables stood out as the most important predictors across all habitats while proxies of anthropogenic pressures were overall more important in intertidal habitats. In the intertidal, presence of biogenic habitat strongly modulated the amount of explained variance and the identity of the selected variable. Across both tidal levels, analysis of models' residuals further indicated that biogenic habitats might mitigate the effect of extreme environmental events. Our study provides a hierarchy of the most important drivers of benthic communities across different habitats and tidal levels, emphasizing the prominence of anthropogenic pressures on intertidal communities and the role of biogenic habitats in mitigating environmental changes.

Sequential treatment of nitrate and phosphate in groundwater using a permeable reactive barrier system

When not properly treated, nitrate and phosphate present in groundwater can damage human health and environments. In this study, laboratory column experiments were performed for sequential treatment of nitrate and phosphate in groundwater. Two columns were set up and connected: one to treat nitrate with organic carbon materials (i.e., woodchips) and the other to treat phosphate with basic oxygen furnace (BOF) slag. The columns were operated for a total of 1.6 years. The results showed that nitrate was removed through denitrification and phosphate was removed by precipitation of the phosphate minerals (e.g., hydroxyapatite). BOF slag was effective at removing phosphate, though the high pH (11-12) of the system's effluent water raised a concern for the downgradient areas. Of the three subsequent experiments performed, pH was near neutral when the effluent of the BOF slag column was passed through local soil. Sparging with CO₂ and air, in contrast, resulted in pH levels that were either too low (5 in the case of CO₂) or too high (9.5 in the case of air). The study shows that sequential permeable reactive barrier (PRB) systems consisting of woodchips and BOF slag can be effective for removal of nitrate and phosphate in groundwater and they can be a long-term remedial solution for groundwater contaminated with both nitrate and phosphate.

Ecosystem health status and trophic modeling of an anthropogenically impacted small tropical estuary along India's west coast

The tropical estuaries are characterized with high biological production and also impacted by anthropogenic activities. Describing these estuaries in terms of ecological data and trophic dynamics to reveal the ecological impacts is gaining attention recently. In this study, the ecological structure is analyzed for a heavily impacted small macrotidal tropical estuary, Ulhas river estuary (URE), situated near Mumbai megacity in the western coast of India, to delineate the impact of anthropogenic stressors on the ecosystem functioning. The URE is being exploited for sand and fisheries resources, and also faces risks from anthropogenic activities. The ecological data of URE were compiled for 2017-18 together with the most relevant literature estimates to construct an ecosystem model. A trophic organization in 20 functional groups was identified for URE using Ecopath modeling approach. The functional groups identified in the food web ranged from detritus and primary producers (trophic level (TL) = 1) to large pelagics (TL = 4.14). Detritivory: herbivory ratio (1.35) indicated that the detritus chain is dominant over the primary producer's chain. The total system throughput (TST) was estimated as 16 736.2 t km^-2year^-1. The indices such as net system production (NSP = 1 398.781 t km^-2 year^-1), total primary production/total biomass (TPP/TB = 25.17), biomass/total system throughput (TB/TST = 0.01), recycling index (Finn's Cycling Index = 13.94%), system omnivory index (0.3), relative ascendency (25.6%), and system overhead (74.4%) classified URE as an immature system. The eco-exergy index (30748.54 gm detritus equivalent m^-2) showed that the ecosystem is a moderately stable and relatively less organized network. The estuarine fish community index (EFCI) yielded a value of 38 indicating the poor health status of the fish community in URE. The study delivers a comprehensive understanding of the ecosystem setting in URE and characterizes the prevailing condition. The ecological indicators analyzed here point towards a medium to a high level of impact in URE due to anthropogenic activities.

Changes in benthic macrofauna in oyster parks during an OsHV-1 μVar oyster spat mortality outbreak

In intertidal areas, oyster farming creates a crosshatching pattern between oyster tables and aisles. Tables provide a refuge from the current and solar irradiance and the oysters facilitate the accumulation of OM, thereby structuring the spatial organization of the associated macrozoobenthic community at mesoscale. The aim of this study was to describe the quality of the oyster table environment at small scale and the response of the macrozoobenthic community to OsHV-1 μvar oyster mortality. The species assemblage was dominated by Golfingia vulgaris, Tubificoides benedii, Capitella capitata and Scoloplos armiger. The table habitat appeared to be in a bad ecological state throughout the 2-month survey (May and June 2017), whereas in the aisle, eutrophication occurred lately and was clearly related to be due to the massive stranding of dead seaweed at the end of the survey (in early July). So, this disturbance of the species assemblage seemed to occur in two phases: 1) after oyster spat mortality and 2) after seaweed stranding resulted in a bad ecological status, as revealed by macrofaunal indicators. Large quantities of OsHV-1 DNA were also found in some species, including small crabs and amphipods, one week after the mortality crisis, but there is no apparent virus reservoir found in the benthic species.

Biodiversity and Habitat Assessment of Coastal Benthic Communities in a Sub-Arctic Industrial Harbor Area

Coastal ecosystems face increasing anthropogenic pressures worldwide and their management requires a solid assessment and understanding of the cumulative impacts from human activities. This study evaluates the spatial variation of benthic macrofaunal communities, sediments, and heavy metals in the sub-Arctic coastal ecosystems around Sept-Îles (Québec, Canada)—a major port area in the Gulf of St. Lawrence. Physical sediment properties varied in the studied area, with a general sandy-silty profile except for specific locations in Baie des Sept Îles where higher organic matter and heavy metal concentrations were detected. Macrofaunal assemblages were evaluated for two taxa size classes (organisms > 0.5 mm and > 1 mm) and linked to habitat parameters using regression models. Communities of smaller organisms showed signs of perturbation for one assemblage close to industrial activities at Baie des Sept Îles, with an increased number of tolerant and opportunistic species, contrasting to neighboring regions whose compositions were similar to other ecosystems in the Gulf of St. Lawrence. This study enhances the understanding of sub-Arctic benthic communities and will contribute to monitoring programs for industrial harbor ecosystems.

Juvenile fish caging as a tool for assessing microplastics contamination in estuarine fish nursery grounds

Estuaries serve as nursery grounds for many marine fish species. However, increasing human activities within estuaries and surrounding areas lead to significant habitat quality degradation for the juveniles. In recent years, plastic pollution has become a global environmental issue as plastic debris are found in all aquatic environments with potential adverse impacts on marine biota. Given the important ecological role of estuaries and implications of microplastics (MP) in ecosystems, here we assess the occurrence, number, size, and polymer types of MP ingested by wild and caged juvenile European flounder (Platichthys flesus). We deployed caged fish for 1 month at five sites in three estuaries in the eastern English Channel. The Seine estuary, heavily impacted by manmade modifications and one of the most contaminated estuaries in Europe, was compared to two smaller estuaries (Canche and Liane) less impacted by industrial activities. We found that juvenile flounders (7-9 cm) were vulnerable to plastic ingestion. Seventy-five percent of caged fish and 58% of wild caught fish had the presence of MP items in their digestive tract. Fibers (69%) dominated in the fish's digestive tract at all sites. An average of 2.04 ± 1.93 MP items were ingested by feral juvenile flounder and 1.67 ± 1.43 by caged juvenile flounder. For the caged fish, the three sites impacted by wastewater treatment plant (Liane, Le Havre harbor, and Rouen) were those with the highest percentage of individuals that has ingested MP items. Most of the isolated items were fibers and blue in color. Polymers identified by micro Raman spectroscopy were polycaprolactam, polyethylene terephthalate, and polyurethane. Although other environmental factors may have affected caged fish condition and mortality, we found no significant correlation with the number of ingested MP. However, the high occurrence of MP ingested by juvenile fish on nursery grounds raises concerns on their potential negative effects for fish recruitment success and population renewal. Finally, this study describes, for the first time, the feasibility of using caged juvenile fish as an assessing tool of MP contamination in estuarine nursery grounds.

Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale

Estuaries are important areas highly vulnerable to anthropogenic pollutions. Therefore, the assessment of estuarine water quality is a major ecological issue. In this study, we sampled juveniles of the European flounder in the "pristine" Canche estuary, and caged them in Canche and in two polluted sites of the Seine estuary, Rouen and Fosse Nord. After one month, the metal and organic pollutants in these sites were assessed, and we evaluated several phenotypic indicators (condition index, RNA/DNA ratios and genotoxicity), and extracted the proteins in fish livers for analysis using a shotgun proteomics approach. The results showed strong modifications in the fish caged in both sites of the Seine estuary, as compared to those caged in Canche. In particular, many proteins involved in phase I and phase II detoxification reactions were accumulated in the liver of fish caged in the site showing the highest pollution, Rouen. In addition, we observed a general disruption of metabolism, in particular an increase in lipid synthesis and carbohydrate degradation in Rouen, and a decrease in the abundance of proteins associated to translational activity in Fosse Nord. At both sites, several stress proteins were decreased. The proteomic impact of the encagement by itself was also evaluated, by comparing the liver proteome of fish caged in Canche to that of fish stayed in natura during the same time. The results showed proteomic signatures of exposure to stressful conditions (particularly heat stress), most probably related to the micro-habitat in which the cages were placed. In conclusion, the caging technique is of great interest for ecotoxicological assessment of estuarine waters, but should consider that the results are representative of the micro-habitat around the cages, which does not necessarily represent the overall heterogeneity of the estuarine environment.

Structure of the benthic macrofauna of an anthropogenic influenced area: Skhira Bay (Gulf of Gabès, central Mediterranean Sea)

Skhira Bay located in the Gulf of Gabès, on the southeastern coast of Tunisia, is an important area in terms of its dense vegetation coverage, wide continental shelf, and fisheries resources. However, this area with a typically micro-tidal range is subject to intensive anthropogenic pressures: soft bottom trawling, chemical pollution from phosphoric acid production, and shipping activity. The present study is the first investigation of the structure of the benthic macrofauna on this part of the Tunisian coast. In April 2010, 28 stations were sampled along four transects from the phosphogypsum outfall on an inshore-offshore gradient. A total of 239 macrobenthos taxa, belonging to nine zoological groups and 140 families, were identified with a dominance of polychaetes (33.5%), crustaceans (29.4%), and mollusks (19.6%). Results show that the stations facing the phosphogypsum discharges are the most disturbed and characterized by a poorly diversified macrofauna. The macrofauna is dominated by carnivores, suspension feeders, and selective deposit feeders, and seems to be linked more to the availability of trophic resources than to disturbance. Four benthic assemblages are identified using Cluster and MDS analyses linked to edaphic factors, such as sediment structure, organic matter content, inshore/offshore gradient, and the proximity of the phosphogypsum outfall. The biotic indices (AMBI and BO2A) calculated from macrofauna data show that the ecological status of Skhira Bay varies overall from moderate to good. This study suggests initiating a long-term monitoring program to improve our understanding of the temporal changes of this ecosystem, to recommend the necessary conservation measures in this area of high-value natural heritage.

Rapid sewage pollution assessment by means of the coverage of epilithic taxa in a coastal area in the SW Atlantic

The sewage pollution impact over coastal environment represents one of the main reasons explaining the deterioration of marine coastal ecosystems around the globe. This paper aims to detect promptly a putative sewage pollution impact in a Southwestern Atlantic coastal area of Argentina as well as to identify a straightforward way for monitoring, based on the relative abundance coverage of the intertidal epilithic taxa. Four sampling sites were distributed at increased distances from the sewage outfall where the cover of individual epilithic species was visually estimated. The surrounded outfall area (i.e. outfall site) resulted polluted with high percentages of organic matter in sediment and Enterococcus concentration in seawater. The structure of the community showed a remarkable difference between the polluted site (outfall site) and the unpolluted sites. The polychaete Boccardia proboscidea dominated the outfall site with variable abundances of the green algae Ulva sp. during the period of study, decreasing the diversity of the community, while the mussel Brachidontes rodriguezii and variable abundances of several algae species dominated the unpolluted sites. The monitoring of the benthic community represents an effective, non-destructive, relative inexpensive and rapid method to assess the health of the coastal environment in the study area. The large abundance of B. proboscidea along with the absence of B. rodriguezii individuals at <300m to the sewage outfall discharge allowed the success of this classical monitoring method in a temperate marine-coastal ecosystem with certain gradient of pollution.

Can the leaf-bag technique detect benthic macrofauna responses to sediment contamination by metals and metalloids in estuaries?

The Estarreja Channel, Ria de Aveiro, Portugal, received industrial effluents for over 70years. Despite the discharges stopped a decade ago, a recent study showed negative ecological effects still associated with the metal and metalloid contaminated sediments. In contaminated versus reference channels, this study compared the benthic macrofauna collected with corer and mesh-bags for community structure and synthesis descriptors, namely taxa richness (S), Shannon-Wiener diversity (H'), taxonomic (AMBI and M-AMBI) and non-taxonomic (ISS) biotic indices and functional indicators (decomposition rates). The corer infauna dominated community and the associated S, H', M-AMBI and ISS indices detected significant differences between contaminated and reference channels, otherwise undistinguished by the decomposition rates and the mesh-bags epifauna dominated community and associated indices. This suggests that sediment contamination in the deeper layers is not being transferred to the surface layers, explaining the non-affectation of the benthic macrofauna communities sampled in the leaf-bags.

Assessing environmental health using ecological indices for soft bottom in sewage-affected rocky shores: The case of the largest seaside resort of SW Atlantic

Efficient ecological indices can reflect the differences between impacted and nonimpacted sites, leading to significant variations at the contamination spatial scale. Here, we evaluated the spatial-temporal variability of 3 ecological indices (AMBI, M-AMBI, and BENTIX) in response to the distinct levels of sewage contamination. The indices were evaluated in two different ways: including Brachidontes rodriguezii (IBR) and excluding B. rodriguezii (EBR). The fact that mussel beds create a secondary infaunal habitat allows us to test these indices for soft bottoms in areas with rocky bottoms. The effectiveness and the level of agreement of these indices were increased when they were calculated with EBR. BENTIX and M-AMBI produced under- and overestimations of the ecological status of the studied sites. AMBI (EBR) seems to be better suited for environmental quality assessment in the study area. This index reduces the processing time of samples; thus, the AMBI (EBR) index could be used as a robust management tool for monitoring programs in areas with hard substrate.

Testing the efficiency of temperate benthic biotic indices in assessing the ecological status of a tropical ecosystem

The objectives of the present study were to evaluate the ecological status of tropical coastal waters using the temperate benthic indices and examine the effect of seasonal variability on the performance of benthic indices. Macrobenthic samples were collected from northwest to southeast coast of India during 2003-2012 and we tested different univariate indices, ecological strategies, indicator species and multimetric indices. AMBI and multimetric indices performed satisfactorily in evaluating the ecological status. Seasonal variability on the biotic indices was observed during the southwest monsoon and fall intermonsoon period due to recruitment. Therefore, we recommended the non-monsoon period (January-May) as a suitable time of the year to use the indices for effective assessment of the Indian coastal waters. Results show that, the temperate benthic indices are efficient in assessing the tropical environmental status. However, complementary use of different indices is suggested for accurate assessment of the environmental status.

Monitoring the effects of wastewater treatment strategies

Wastewater disposal in coastal waters causes widespread environmental problems. Secondary treatment is expected to reduce the adverse effects of insufficiently treated wastewater. The environmental impact of sewage disposal via 18 wastewater treatment plants was analysed using the benthic opportunistic polychaetes and amphipods (BOPA) index. In previous studies this index proved to be an effective tool for monitoring sewage pollution. The impact of these discharges was highly related to treatment level, which ranged from pre-treatment to biological, as well as to flow rates and outfall position. Locations affected by pre-treated wastewater showed environmental degradation, especially marked near outfalls with higher flow rates. At most locations, biologically treated wastewater did not cause a significant impact and an improvement in ecological integrity was detected after this secondary treatment had been implemented. The impact of discharge was highly related to chemical oxygen demand (COD), suspended solids and nutrient concentrations, which are all lower in biologically treated wastewater. A 'moderate' ecological status was observed not only near sewage outfalls with high wastewater flow rates (>1,500,000 m(3)/month) with a COD over 200 mg/l but also near those with lower flow rates but with a COD over 400 mg/l. To reduce the impact of sewage disposal, it is necessary to carry out adequate treatment, have site outfalls deep enough, and implement water recycling.

Long-term (1998-2010) large-scale comparison of the ecological quality status of gulf of lions (NW Mediterranean) benthic habitats

A comprehensive Mediterranean data set has been used to address 3 questions associated with the use of sensitivity/tolerance based biotic indices to infer the Ecological Quality status (EcoQs) of benthic habitats. Our results showed: (1) a significant effect of the reference database on derived sensitivity/tolerance measure (ES500.05) as well as associated Benthic Quality Index values and derived EcoQs; (2) a lack of correlation neither between BQI and AZTI Marine Biotic Index values nor between BQI and Multivariate-AZTI Marine Biotic Index values; (3) a lack of correlation between the values of the Benthic Habitat Quality Index (index derived from Sediment Profile Imagery) and those of either of the 3 tested biotic indices; and (4) a general agreement between the 3 tested biotic indices in describing the lack of global trend for the EcoQs of the Gulf of Lions despite the occurrence of significant changes in benthic macrofauna composition between 1998 and 2010.

Spatial variability of three benthic indices for marine quality assessment in a subtropical estuary of Southern Brazil

Indices based on macrobenthic responses to disturbance remain to be adequately tested for the detection of spatial variability by robust sampling designs. We present herein a congruence test to real-world data of the widely used indices AMBI, M-AMBI and BENTIX in tidal flats of a subtropical estuary. We used a hierarchical sampling design to evaluate the spatial variability of the indices in response to distinct levels of sewage contamination. Indices were then tested for correlations with chemical proxies of contamination and for the similarity of responses. BENTIX and M-AMBI produced over- and underestimations of ecological status. We found a low degree of similarity among indices as an expression of the spatial variation of macrofaunal assemblages on their performances. Only AMBI varied at the contamination scale (10(3)m) and was congruent with physical-chemical proxies. Ambiguous responses indicated effects of natural inputs of organic matter rather than environmental quality associated to sewage.

Assessing the ecological quality status of a temperate urban estuary by means of benthic biotic indices

Benthic indices are commonly used tools for assessing the environmental quality, because they represent a simple source of scientific information. However, their performance could vary depending on the application area and perturbation types, thus they should be tested before used in other remote geographic regions. This study aims to test the use of some of the most widely common benthic biotic indices for assessing the environmental quality of Montevideo's coastal zone at a seasonal scale against many physicochemical variables. From all the evaluated indices, AMBI appears to be the most suitable one to assess the environmental quality. The study also allowed us to infer the most relevant physicochemical variables: protein, lipid and heavy metal sediment concentration. Additionally, site-specific threshold effect levels for heavy metals and biopolymers were established, which appear to be useful to determine tolerable levels of such stressors in future assessments or monitoring programs for the study area.

The effect of breakwaters on the structure of marine soft-bottom assemblages: a case study from a North-Western Mediterranean basin

This two-year study is the first attempt to analyse the ecological effects of breakwater systems on soft-bottom assemblages along the North Tyrrhenian coast. Differently from previous studies focusing on infauna of on-shore and off-shore sides, we compared the assemblages inhabiting the surrounding soft-bottoms not directly protected by the breakwaters, defining our sampling stations at varying distances from the breakwaters and at constant distance from the coast. Data collected revealed that abundance, species richness and M-AMBI ecological quality differed between northern and southern sides, and were related to distance from structures. Multivariate analyses of relationships between assemblages and abiotic characteristics support this hypothesis. The extension of these effects, that resulted to be weak and limited to a restricted area, could be a consequence of coastal current on local hydrodynamics. This study provides novel and critical information for the management of the coastal defence infrastructure spreading along the western coast of Italy.

Response of multi-metric indices to anthropogenic pressures in distinct marine habitats: the need for recalibration to allow wider applicability

Sustainable exploitation of coastal ecosystems is facilitated by tools which allow reliable assessment of their response to anthropogenic pressures. The Infaunal Quality Index (IQI) and Multivariate-AMBI (M-AMBI) were developed to classify the ecological status (ES) of benthos for the Water Framework Directive (WFD). The indices respond reliably to the impacts of organic enrichment in muddy sand habitats, but their applicability across a range of pressures and habitats is less well understood. The ability of the indices to predict changes in response to pressures in three distinct habitats, intertidal muddy sand, maerl and inshore gravel, was tested using pre-existing datasets. Both responded following the same patterns of variation as previously reported. The IQI was more conservative when responding to environmental conditions so may have greater predictive value in dynamic habitats to provide an early-warning system to managers'. Re-calibration of reference conditions is necessary to reliably reflect ES in different habitats.

Ecological effects of contaminated sediments following a decade of no industrial effluents emissions: the Sediment Quality Triad approach

Sediments contaminated by industrial effluents a decade after the emissions were stopped were statistically compared to sediments from reference channels, using the Sediment Quality Triad approach. The metals and metalloid concentrations, mainly Hg and As, increased towards the upper part of a contaminated channel, where the industrial discharge was located. A bioaccumulation assay with Scrobicularia plana showed the highest bioaccumulation and mortality in the most contaminated sediments and bioaccumulation strongly correlated with the sediments metals and metalloid concentrations. The resident macroinvertebrate community also showed significant differences between the contaminated and reference channels, in the upper areas, where the community was most affected. All three elements of the quality triad rejected the null hypothesis and indicated that despite the emissions ceasing in 2004, sediments remain contaminated by high levels of metals and metalloid, leading to bioaccumulation and with severe community level consequences.

Structure and taxonomic composition of free-living nematode and macrofaunal assemblages in a eutrophic subtropical harbour, Hong Kong

The spatial and seasonal taxonomic composition patterns of macrofauna and nematodes in a eutrophic subtropical harbour, previously suffered from sewage pollution, were studied in relation to a number of sediment parameters. In the polluted, inner-harbour area, levels of organic contents and heavy metals were high, whereas species number, abundance and diversity of nematodes and macrofauna were the lowest in comparison to the cleaner, outer-harbour area. Different taxonomic composition patterns of nematodes and macrofaunal assemblages were found between inner-harbour and outer-harbour area, which was highly correlated with sediment nutrient levels. Different responses of macrofaunal and nematode communities to sewage pollution suggested that macrofauna might be more tolerant than nematodes to eutrophic conditions due to their ability to modify the sediment. The present findings indicated the usefulness of studying both nematode and macrofaunal communities, in order to reveal different aspects of the benthic ecosystems in response to organic enrichment.

Macrobenthos response to sewage pollution in a tropical inshore area

Organic sewage pollution is the major stressor that affects benthic communities in the coastal waters. In the present study involving a once-off sampling (July-August 2003) of a sewage treatment plant (STP) outfall and areas 6 km farther into the sea, we tried to estimate the severity of organic pollution on marine macrobenthos over a pollution gradient in the inshore waters (station depths, 5-30 m) off a heavily urbanized tropical city, on the east coast of India. Multivariate ordination analyses revealed two different groups of faunal assemblages. Group I is associated with sites impacted by the sewage outfall and group II with the locations 3-6 km away in the open sea. Polychaetes and amphipods were the predominant fauna with significant taxonomic differences between the assemblages. Despite the homogeneity in sediment texture, the two-fold increase in sediment organic matter near the sewage outfall area supported r-strategists, while group II locations favoured K-strategists. Approximation through benthic opportunistic polychaetes amphipods (BOPA) index and information on the key taxa responsible for the observed assemblage patterns corroborated these findings. Thus, the present findings revealed how organic sewage pollution influences benthic diversity in coastal waters by supporting communities of opportunistic characteristics. We advocate inclusion of community traits and compatible analytical tools (statistical approaches) in studies of similar nature so that the observations could be compared and broad remedial measures could be evolved.

Macrobenthic community for assessment of estuarine health in tropical areas (Northeast, Brazil): review of macrofauna classification in ecological groups and application of AZTI Marine Biotic Index

The aim of the present study was to investigate the ecological quality of tropical estuaries on the northeastern coast of Brazil using the AMBI. Macrofauna classification based on ecological groups was reviewed using the Indicator Value (IndVal) coefficient. The results indicate that the ecosystems exhibit some level of disturbance. Most sites are situated between slightly-moderately disturbed boundaries due to the higher proportion of Nematoda (assigned here as Ecological Group I) and of Oligochaeta and Tubificidae (both classified as Ecological Group V). The AMBI proved efficient in evaluating environmental status, although the applicability of this index requires adjustments regarding some species in ecological groups. The present study also highlights the merits of the IndVal method for examining the assignments of species/taxa to an ecological group and demonstrates the validity of this coefficient is an assessment tool. Moreover, the complementary use of different methods is recommended for the assessment of ecosystem quality.

Physiological status and intersex in the endobenthic bivalve Scrobicularia plana from thirteen estuaries in northwest France

The bivalve Scrobicularia plana, an important species for the structure and functioning of estuarine and coastal mudflats, was studied in thirteen sites from NW France differing by their degree of contamination to document the presence of reproduction impairments (intersex, sex ratio, gonadosomatic indices) in relation to the condition revealed by using hepatosomatic and condition indices. In agreement with recent studies in other European estuaries, intersex was revealed in all the studied estuaries, including sites the chemical and ecological status of which is considered "good" according to the criteria of the European Water Framework Directive. The presence of endocrine disrupting chemicals (EDCs) could result in such disturbances. Our results re-inforce the concern linked to the subtle effects of EDCs, which are active at very low doses, often in the absence of any major sign of toxicity. However at this stage, no clear link may be established between intersex and population effects.

Evaluation of the possibility for phytoplankton monitoring frequency reduction in the coastal waters of the Community of Valencia, in the scope of the Water Framework Directive

The Water Framework Directive, under the European Legislation, requires that all European waters, should reach a good ecological status by 2015. To achieve this goal, a phytoplankton monitoring network with monthly water samplings was established to evaluate the ecological quality, in the coastal waters of the Community of Valencia, and the collected data have allowed us to study the efficiency of the monthly campaigns of the monitoring network. With the results obtained in this research, we have designed a new monitoring strategy for the coastal waters of Valencia that for certain water bodies can mean lower sampling frequency. The new monitoring policy provides results as reliable as the previous strategy and allows a precise ecological classification of water bodies at a lower cost. The methodologies we have developed can be used in other monitoring networks and are not limited by geographic location or by the type of water body.

Ecological quality assessment of small estuaries from the Portuguese coast based on benthic macroinvertebrate assemblages indices

Benthic macroinvertebrates communities are the most consistently emphasized biotic component of aquatic ecosystems and are one of the biological indicators required for assessment by the European Water Framework Directive. In this context, several indices based on these communities have been developed in order to assess ecological quality of estuarine systems. In the present work we used AMBI, M-AMBI, BENTIX and BAT to distinguish ecological status of five small estuarine systems of the Portuguese south and southwest coasts. Although indices outputs did not differ between systems and sampling seasons, results indicated that the metrics in which these indices are based could differentiate community structures as a result of two main gradients that force these communities: the natural variability, and the anthropogenic impact.

Comparison of granulometric methods and sampling strategies used in marine habitat classification and Ecological Status assessment

Sediment particle size analysis (PSA) is routinely used to support benthic macrofaunal community distribution data in habitat mapping and Ecological Status (ES) assessment. No optimal PSA Method to explain variability in multivariate macrofaunal distribution has been identified nor have the effects of changing sampling strategy been examined. Here, we use benthic macrofaunal and PSA grabs from two embayments in the south of Ireland. Four frequently used PSA Methods and two common sampling strategies are applied. A combination of laser particle sizing and wet/dry sieving without peroxide pre-treatment to remove organics was identified as the optimal Method for explaining macrofaunal distributions. ES classifications and EUNIS sediment classification were robust to changes in PSA Method. Fauna and PSA samples returned from the same grab sample significantly decreased macrofaunal variance explained by PSA and caused ES to be classified as lower. Employing the optimal PSA Method and sampling strategy will improve benthic monitoring.

Sampling epifauna, a necessity for a better assessment of benthic ecosystem functioning: an example of the epibenthic aggregated species Ophiothrix fragilis from the Bay of Seine

Sampling the sea bottom surface remains difficult because of the surface hydraulic shock due to water flowing through the gear (i.e., the bow wave effect) and the loss of epifauna organisms due to the gear's closing mechanism. Slow-moving mobile epifauna, such as the ophiuroid Ophiothrix fragilis, form high-density patches in the English Channel, not only on pebbles like in the Dover Strait or offshore Brittany but also on gravel in the Bay of Seine (>5000 ind m(-2)). Such populations form high biomasses and control the water transfer from the water column to the sediment. Estimating their real density and biomass is essential for the assessment of benthic ecosystem functioning using trophic web modelling. In this paper, we present and discuss the patch patterns and sampling efficiency of the different methods for collecting in the dense beds of O. fragilis in the Bay of Seine. The large Hamon grab (0.25 m(-2)) highly under-estimated the ophiuroid density, while the Smith McIntyre appeared adequate among the tested sampling grabs. Nowadays, diving sampling, underwater photography and videos with remote operated vehicle appear to be the recommended alternatives to estimate the real density of such dense slow-moving mobile epifauna.

Critical appraisal on the identification of Reference Conditions for the evaluation of ecological quality status along the Emilia-Romagna coast (Italy) using M-AMBI

According to the European Water Framework Directive, the ecological status (ES) of a water body is determined by comparing observation data with undisturbed Reference Conditions (RCs). Defining RCs is crucial when evaluating the ES of a water body as it strongly affects the final outcome of any index application. Identifying RCs by observing real sites is not feasible in many marine environments, such as the Emilia-Romagna coast (Italy, N-Adriatic Sea). We used a statistical approach on a large dataset to derive RCs for the application of the benthic index M-AMBI in this area. We then applied M-AMBI to samples collected along a gradient of presumed environmental disturbance. The results put 14.8% of the Emilia-Romagna samples in "High" ES, 60.2% in "Good", 23.0% in "Moderate" and 2.0% in "Poor", showing a spatial gradient of improving quality. These results are in agreement with the extensive ecological knowledge available for this area.

Ecological quality assessment of small estuaries from the Portuguese coast based on fish assemblages indices

The importance of establishing the ecological quality of estuarine systems has been widely acknowledged and led to the development of several fish community-based multimetric indices. Nevertheless, a question rose about the accuracy of these tools when natural disturbance is acting upon the organization of the systems' communities. Four multimetric indices were used to examine their ability to differentiate the ecological status of five small estuarine systems (southern Portugal), and also to test if they reflected the level of anthropogenic pressures. Fish assemblages from Mira, Odeceixe and Aljezur (in the Southwest coast), Gilão and Bensafrim (in the South coast) estuaries were sampled seasonally for one year, and anthropogenic sources of pressure were identified and quantified. We found that although the applied indices provided information on ecological condition differentiation among systems, they are unable to explain different classes of ecological status in systems with equivalent pressure levels.

Effective methods for assessing ecological quality in intertidal soft-sediment habitats

Impacts of anthropogenic pollution on marine ecosystems are being addressed by legislation to protect and restore coastal and transitional waters. A range of biological measures have been investigated for their ability to indicate anthropogenic disturbance in subtidal soft-sediment habitats, but little work to date has focussed in intertidal habitats. This study investigated the sensitivity of communities, individual taxa, diversity indices and biotic indices to nutrient and organic enrichment in intertidal soft-sediment habitats. Variation in macrofaunal communities was more strongly associated with anthropogenic stressors than with natural environmental variation. Two multimetric indices, M-AMBI and IQI, were more closely associated with nutrient and organic pollution than the AMBI and ITI indices. Intertidal monitoring based on existing monitoring tools offers a cost effective alternative to subtidal monitoring and has potential to form the basis for an ecosystem level approach.

Sensitivity of tanaid Apseudes latreillei (Milne-Edwards) populations to sewage pollution

Apseudes latreillei (Milne-Edwards) is a common and abundant tanaid in soft-bottom communities from waters off East Atlantic and Mediterranean coasts. Its sensitivity to pollution is not clear despite being an abundant and widely distributed crustacean, since it has been reported as both a tolerant and sensitive species. This paper tests the sensitivity of A. latreillei to sewage discharges in fine-sand communities along the Castellon coast (W. Mediterranean). We analysed variation in tanaid populations between sites at varying distances from sewage outfalls with respect to population density, size distribution, sex ratio and their correlation with different abiotic factors of waste water and sediment. Results showed clearly that A. latreillei populations were affected by the presence of sewage outfalls, to such an extent that sewage disposal outlets produced a decrease in population density and changes in size spectra.

Assessing coastal benthic macrofauna community condition using best professional judgement--developing consensus across North America and Europe

Benthic indices are typically developed independently by habitat, making their incorporation into large geographic scale assessments potentially problematic because of scaling inequities. A potential solution is to establish common scaling using expert best professional judgment (BPJ). To test if experts from different geographies agree on condition assessment, sixteen experts from four regions in USA and Europe were provided species-abundance data for twelve sites per region. They ranked samples from best to worst condition and classified samples into four condition (quality) categories. Site rankings were highly correlated among experts, regardless of whether they were assessing samples from their home region. There was also good agreement on condition category, though agreement was better for samples at extremes of the disturbance gradient. The absence of regional bias suggests that expert judgment is a viable means for establishing a uniform scale to calibrate indices consistently across geographic regions.

Testing BOPA index in sewage affected soft-bottom communities in the north-western Mediterranean

The implementation of the European directive (ELD) 2000/60/EC has produced the development of several biotic indices based in benthic communities. These indices try to summarise ecological quality status of different communities. However, a universal index that works in all situations is difficult to establish, because there are several sources of variation. Therefore, there is the need for testing and validation of these indices which is required for making management decisions on different scales, and in different regions and communities. In this study we test one of these indices, BOPA index, developed by Dauvin and Ruellet [Dauvin, J.C., Ruellet, T., 2007. Polychaete/amphipod ratio revisited. Marine Pollution Bulletin 55, 215-224] in five locations affected by sewage disposal. These disposals are often released via outfall into shallow subtidal habitats, leading to a common source of pollution in coastal marine environments. BOPA index provides a valuable overview of the gradient status of a benthic environment, discriminating between stations more affected by discharge. Nevertheless, BOPA index, used to establish the ecological quality status, seemed to overestimate the status and hence there is the need to calibrate the thresholds between EcoQs classes as defined for these medium-to-fine sand communities, which are characteristics of shallow sublittoral soft-bottoms of the north-western Mediterranean Sea.

An adjustment of benthic ecological quality assessment to effects of salinity

In the last decade a politically inspired marine protection movement arose in the European Union. This movement leads to an holistic strategy. Merging the Water Framework Directive (WFD) and the Marine Strategy Directive (MSD) along the European coastline demands sophisticated ecological classification procedures. The 'Benthic Quality Index' (BQI) is one of several indices created in view of the WFD. We used the dynamic species reference system ES(50)(0.05) to test the capability of BQI to exclude primary environmental factors including the salinity gradient and depth (a proxy for the oxygen regime) from the ecological quality (EcoQ) assessment. A macrozoobenthos dataset of the southern Baltic Sea spreading over more than 20 years and over 100,000 km2 was used for the EcoQ assessment. Quality assurance rules were applied to the record set and an analytical dataset of 936 sampling events with 20,451 abundance records was used in the analysis. We show that the natural salinity gradient has a severe impact on the BQI based EcoQ. We adapted the calculation procedure to reduce the salinity effects to a minimum. According to the adaptation 503 sensitivity/tolerance values for 87 species were computed. These values were calculated within seven salinity ranges from 0 to >30 PSU and two depth zones. These values can be used as a reference for further investigation in the Baltic and other areas with similar environmental conditions.

The robustness of ecological indicators to detect long-term changes in the macrobenthos of estuarine systems

Accurate and reliable benthic quality indicators are in great demand following the recent developments and the strict time schedule for implementing the European Water Framework Directive. The Mondego estuary has experienced a progressive deterioration during the 1990s, followed by a partial ecological recovery due to restoration measures in 1997/1998. We have used the estuary as a model system to test the performance and robustness of a set of ecological indicators in highlighting the changes in the ecological state of intertidal areas. Over a period of 17 years (1985-2002), we calculated Margalef, Shannon-Wiener, Berger-Parker, Taxonomic Distinctness measures, AZTI's Marine Biotic Index, Infaunal Trophic Index, and Eco-Exergy based indices and tested differences across periods characterised by different anthropogenic disturbance. We combined temporal data within three periods: before, during and after disturbance, based on progressive information on the changes in the extended type of anthropogenic disturbance. Indices were then compared with biological and abiotic descriptors (macroalgae, macrophytes, benthic macrofauna, nutrients concentration, sediment grain size and total organic carbon). We found great disparity in the indicators ability to capture temporal changes, showing distinct performances at each site. At the Zostera noltii site, only Margalef, Total Taxonomic Distinctness and the thermodynamically based indices captured temporal changes, despite giving higher values during the disturbance period. At the bare sediment site, Taxonomic Distinctness, ITI, Shannon-Wiener, Berger-Parker, AMBI and the TBI were able to distinguish between periods, in agreement with the differences observed analysing the macrobenthic assemblages. Furthermore, Taxonomic Distinctness was not robust enough to detect any temporal or spatial change. We thus suggest further research to understand the behaviour of ecological indicators, in view of their crucial importance for the management and protection of marine coastal areas.

The estuarine quality paradox: Is it possible to define an ecological quality status for specific modified and naturally stressed estuarine ecosystems?

The implementation of the European Water Framework Directive has provoked enthusiastic debate between scientists and stakeholders, as they try to define the ecological quality status (EcoQS) of all water bodies, including estuaries (i.e., transitional waters). The issue is complex because estuarine environments are variable, due to fresh and marine water input and anthropogenic impacts. Benthic species and communities have adapted to tolerate temporal physico-chemical changes (e.g., salinity, substrata, depth, fine particles and a Maximum Turbidity Zone that is rich in organic matter). However, anthropogenization affects not only the water quality, but also estuarine surface size and navigation channel management. Though numerous bio-indicators and indices are used to define estuarine system EcoQS, very few of them were developed specifically for such variable anthropogenized systems comprising a variety of conditions. The critical question is: 'Is it possible to define an EcoQS for such specific modified and naturally stressed ecosystems?' Indicators must be chosen pragmatically so that they will be environmentally sustainable, economically viable, technologically feasible, socially desirable/tolerable, legally permissible and politically expedient. This contribution proposes an adaptation of the BOPA index, the Benthic Opportunistic Annelida Amphipod index (BO2A), for use in the freshwater zones of transitional waters (i.e., up to the upper limit of tidal range). Several possibilities are discussed in light of the diverse disturbances and the heterogeneity of such stressed zones.

Influence of oyster culture practices and environmental conditions on the ecological status of intertidal mudflats in the Pertuis Charentais (SW France): a multi-index approach

The ecological quality status (EcoQ) of intertidal mudflats constrained by Pacific oyster farming was assessed by single (H', AMBI, BENTIX and BOPA) and multimetric (M-AMBI and average score) index approaches in the Pertuis Charentais (SW France). Fifteen sampling stations were monitored seasonally for sedimentological features and macrozoobenthos in 2004. Sediments affected by oyster biodeposits showed organic matter enrichment, and sediments from off-bottom culture sites had higher organic matter contents and lower redox potentials than sediments from on-bottom culture sites. Biotic indices consistently registered responses of macrozoobenthos to organic enrichment but there was only partial agreement between single index-derived EcoQs. The average score was better than M-AMBI and single indices for determining EcoQs. Accordingly, oyster farming alters intertidal macrozoobenthic assemblages moderately, and off-bottom cultures cause more disturbance than on-bottom cultures. Hydrodynamics and seasons may interact with culture practices in smothering/strengthening biodeposition-mediated effects through dispersal/accumulation of biodeposits.

The macrobenthic community along a mercury contamination in a temperate estuarine system (Ria de Aveiro, Portugal)

Mercury is a widely distributed environmental pollutant and a toxic element to all living organisms. This study represents an attempt to evaluate its correlation with the macrobenthic community structure in a temperate estuarine system, the Ria de Aveiro (Portugal). The macrobenthic community structure showed significant differences along the mercury gradient. Overall, the increase of mercury contamination was associated with reduced total abundance, lower species richness, and dominance of tolerant taxa. The polychaetes Hediste diversicolor and Alkmaria romijni, and the isopod Cyathura carinata were associated with high levels of mercury in sediment, while the bivalves Scrobicularia plana, Cerastoderma edule and Abra alba showed higher density in lesser contaminated sites. Furthermore, highly contaminated sites showed substantially lower abundances of surface-deposit feeders and herbivores, and higher abundances of subsurface-deposit feeders and omnivores. Salinity was also a significant factor affecting the community, being responsible for seasonal variations in the macrobenthic assemblages.

Ecological status assessment in the lower Eo estuary (Spain). The challenge of habitat heterogeneity integration: a benthic perspective

The implementation of the European Water Framework Directive (WFD) requires evaluation of the ecological status (ES) of benthic communities in coastal and transitional water systems, and the intercalibration of assessment methodologies therefore becomes a research challenge. Our aim was to test the suitability of applying the M-AMBI index to assess the status of the Eo estuary (northern coast of Spain). Our results showed that M-AMBI was influenced by the natural variability of benthic communities, and presented an apparent dependence on habitat characteristics. Consequently, the definition of homogeneous areas in transitional water systems should be based on the salinity gradient combined with other factors. To achieve an accurate ES assessment, habitat-specific reference conditions should then be defined prior to the application of M-AMBI; this necessitates dividing an estuary into several sections, which may be classified as different ESs. From this perspective, a novel approach to integrate habitat heterogeneity in a global ES assessment was tested.

Use of multimetric indices to classify estuaries with different hydromorphological characteristics and different levels of human pressure

The assessment of estuaries based on benthic communities is widely used to determine impacts caused by human pressure and is one of the required tools for the implementation of the European Water Framework Directive (WFD). Our study compared multimetric approaches (B-IBI and TICOR) to assess the benthic condition of three Portuguese estuaries (Mondego, Tejo, and Mira rivers) with different levels of natural and human induced stress. Benthic community condition was classified into quality status categories of the WFD and compared for consistency with a priori status categories based upon physical-chemical criteria. Both multimetric indices discriminated equally well between locations classified above or below the good status category but were unable to provide good separation between other quality classes (high/good, moderate, poor/bad). Metrics included in these indices are greatly affected by natural stress and we recommend the development of habitat-specific thresholds to increase the discriminatory ability of any benthic condition index.

Mechanisms and assessment of water eutrophication

Water eutrophication has become a worldwide environmental problem in recent years, and understanding the mechanisms of water eutrophication will help for prevention and remediation of water eutrophication. In this paper, recent advances in current status and major mechanisms of water eutrophication, assessment and evaluation criteria, and the influencing factors were reviewed. Water eutrophication in lakes, reservoirs, estuaries and rivers is widespread all over the world and the severity is increasing, especially in the developing countries like China. The assessment of water eutrophication has been advanced from simple individual parameters like total phosphorus, total nitrogen, etc., to comprehensive indexes like total nutrient status index. The major influencing factors on water eutrophication include nutrient enrichment, hydrodynamics, environmental factors such as temperature, salinity, carbon dioxide, element balance, etc., and microbial and biodiversity. The occurrence of water eutrophication is actually a complex function of all the possible influencing factors. The mechanisms of algal blooming are not fully understood and need to be further investigated.

Assessment of the ecological quality status of soft-bottoms in Reunion Island (tropical Southwest Indian Ocean) using AZTI marine biotic indices

The ability of the two synthetic marine biotic indices, AMBI and M-AMBI, to account for changes in the ecological quality of coastal soft bottoms of Reunion Island according to disturbances was assessed from macrobenthic samples collected in five sectors between 1994 and 2004. Samples were collected under non-perturbed conditions and at two sites subjected to heavy organic enrichment. Both indices are based on a classification of macrofauna into ecological groups (EG), and their transfer to tropical waters required some adaptations. These indices proved efficient in detecting a degradation of habitat quality. Their use resulted in the classification of all sites sampled between 1996 and 1998 as "good" or "high". M-AMBI nevertheless tended to result in the attribution of a slightly worse ecological quality status than AMBI. Together with an update of the EG species list for the Indian Ocean area, our results support the extension of both indices for the assessment of tropical soft bottoms.

A report card and quality indicators for the Seine estuary: from scientific approach to operational tool

The scientific teams from the interdisciplinary Seine-Aval (SA) research program and the SA's operational pole, GIPSA (Groupement d'Intérêt Public Seine-Aval) have worked together to create a report card designed to help the Estuary Council (Conseil de l'Estuaire) revitalize its original functions: maintaining functional links between the various estuarine ecosystems, comprehending and managing the estuary's natural habitats and biological populations, and monitoring and improving the physical-chemical quality of the estuarine waters. The report card will be able to synthesize the information obtained from several system performance variables and available operational indicators. This approach, intended to guide the estuary managers, is the oeuvre of several scientific teams; it is particularly important in the context of the Water Framework Directive because it facilitates the elaboration of a group of relevant indicators, which can then be used as operational tools. A report card will provide decision-makers (e.g., political authorities; national, regional and local institutions and industries) with the key indicators for evaluating the system and predicting changes in terms of selected objectives, such as the preservation and restoration of the estuary's environmental functionalities. The final objective of the research is to choose among the available indicators to approximate potential ecological risks. Integrating the socio-economical data will perhaps lead to setting risk acceptability thresholds for the different uses of the Seine estuary. In the end, collaboration between the scientists, the managers, and the GIPSA operational pole will be essential to produce a viable report card about the environmental status of the Seine estuary. To illustrate the research now under way, this article presents the results for three actions undertaken, concerning: (i) physical indicators (i.e., an inventory of the estuary first as a whole, and then section by section); (ii) benthic indicators (i.e., seven indices which show a moderate EcoQ for the lower part of the estuary); and (iii) a eutrophication indicator (i.e., an indicator for coastal eutrophication potential (ICEP), which helps to limit the nutrient fluxes (N or P) that exceed the silica flux delivered by the Seine network, based on the Redfield ratios for algal propagation).

Benthic indicators: analysis of the threshold values of ecological quality classifications for transitional waters

The effect of the modifications of the threshold values generally adopted for the five EcoQ (Ecological Quality) classes recognized by the European Water Framework Directive (WFD) for the most used benthic indicators and diversity indicators (AMBI, BENTIX, BOPA, BQI, H', ITI and M-AMBI) were studied to test whether it is possible to obtain the same or similar ecological classifications for transitional waters using these different indicators, and determine whether the current classifications can be improved. The analysis included: (i) the use of indicator equations, (ii) the use of reference indicators, and (iii) the use of indicator distribution laws. These investigations demonstrated that it was impossible to obtain an exact intercalibration of the ecological classifications with the selected indicators. However, some propositions to improve the actual classification were suggested.

Performance comparison of two biotic indices measuring the ecological status of water bodies in the Southern Baltic and Gulf of Lions

Two biotic indices, ATZI Marine Biotic Index (AMBI) and Benthic Quality Index (BQI) have been recently introduced within the EC Water Framework Directive to assess the quality of marine habitats: both are based on sensitivity/tolerance classification and quantitative information on the composition of soft-bottom macrofauna. Their performance, especially with regard to sampling effort was assessed based on two data sets collected in Southern Baltic and one from the Gulf of Lions Mediterranean. AMBI was not affected by sampling effort but BQI was. Two modifications were proposed for BQI (i.e., BQI) (1) the removal of the scaling term (i.e., BQI(W)), and (2) the replacement of the scaling term by different scaling term (i.e., BQI(ES)). Both modified BQIs were largely independent of sampling effort. Variability was slightly lower for BQI(W) than for BQI(ES). BQI was highly correlated with BQI(W) and with BQI(ES) both in the Southern Baltic and in the Gulf of Lions. However, the proportions of stations, which were not attributed the same ecological quality status (EcoQ) when using BQI and its two modified forms were always high. Differences in ecological classification were mostly due to the scales used to infer EcoQ. Based on this study we recommend to use BQI(ES) in future studies because it apparently constitutes the best compromise in (1) being independent of sampling effort, (2) limiting the variability in computation in relation with sampling effort, (3) being correlated with BQI and corresponding EcoQ.

Application of biotic indices and relationship with structural and functional features of macrobenthic community in the lagoon of Venice: an example over a long time series of data

In the context of the application of WFD, a scientific debate is growing about the applicability of biotic indices in coastal and transitional waters. In the present work, the question about the discriminating power of different biotic indices and the relationships with the structure and functioning of the macrobenthic community in a transitional environment is discussed. A time series of samples collected during the last 70 years in the lagoon of Venice, reflecting different environmental conditions (a sort of 'pristine state' in 1935, the distrophic crisis in 1988 and subsequent modifications in 1990, the invasion by an alien species and the developing of high impacting fishery in 1999) has been used. The comparison of results obtained by applying different biotic indices, such as AMBI, Bentix and BOPA, shows differences in the discriminating power of indices and a general overestimation of environmental conditions. Discrepancies between environmental status as indicated by biotic indices and the structure and functioning of the benthic community have been highlighted.