Terrestrial pollutant runoff to the Great Barrier Reef: An update of issues, priorities and management responses

Connectivity modelling identifies sources and sinks of coral recruitment within reef clusters

Connectivity aids the recovery of populations following disturbances, such as coral bleaching and tropical cyclones. Coral larval connectivity is a function of physical connectivity and larval behaviour. In this study, we used OceanParcels, a particle tracking simulator, with 2D and 3D velocity outputs from a high resolution hydrodynamic-biogeochemical marine model (RECOM) to simulate the dispersal and settlement of larvae from broadcast spawning Acropora corals in the Moore Reef cluster, northern Great Barrier Reef, following the annual spawning events in 2015, 2016 and 2017. 3D velocity simulations showed 19.40-68.80% more links and sinks than those of 2D simulations. Although the patterns of connectivity among sites vary over days and years, coral larvae consistently dispersed from east to west in the cluster domain, with some sites consistently acting as sources or sinks for local larval recruitment. Results can inform coral reef intervention plans for climate change, such as the design of marine protected areas and the deployment of proposed interventions within reef clusters. For example, the wider benefits of interventions (e.g., deployment of heat adapted corals) may be optimised when deployed at locations that are a source of larvae to others within comparable habitats across the reef cluster.

Herbicide leakage into seawater impacts primary productivity and zooplankton globally

Predicting the magnitude of herbicide impacts on marine primary productivity remains challenging because the extent of worldwide herbicide pollution in coastal waters and the concentration-response relationships of phytoplankton communities to multiple herbicides are unclear. By analyzing the spatiotemporal distribution of herbicides at 661 bay and gulf stations worldwide from 1990 to 2022, we determined median, third quartile and maximum concentrations of 12 triazine herbicides of 0.18 nmol L-1, 1.27 nmol L-1 and 29.50 nmol L-1 (95%Confidence Interval: CI 1.06, 1.47), respectively. Under current herbicide stress, phytoplankton primary productivity was inhibited by more than 5% at 25% of the sites and by more than 10% at 10% of the sites (95%CI 3.67, 4.34), due to the inhibition of highly abundant sensitive species, community structure/particle size succession (from Bacillariophyta to Dinophyceae and from nano-phytoplankton to micro-phytoplankton), and resulting growth rate reduction. Concurrently, due to food chain cascade effects, the dominant micro-zooplankton population shifted from larger copepod larvae to smaller unicellular ciliates, which might prolong the transmission process in marine food chain and reduce the primary productivity transmission efficiency. As herbicide application rates on farmlands worldwide are correlated with residues in their adjacent seas, a continued future increase in herbicide input may seriously affect the stability of coastal waters.

Subtropical coastal microbiome variations due to massive river runoff after a cyclonic event

BACKGROUND

Coastal ecosystem variability at tropical latitudes is dependent on climatic conditions. During the wet, rainy season, extreme climatic events such as cyclones, precipitation, and winds can be intense over a short period and may have a significant impact on the entire land‒sea continuum. This study focused on the effect of river runoff across the southwest coral lagoon ecosystem of Grand Terre Island of New Caledonia (South Pacific) after a cyclonic event, which is considered a pulse disturbance at our study site. The variability of coastal microbiomes, studied by the metabarcoding of V4 18S (protists) and V4-V5 16S (bacteria) rDNA genes, after the cyclone passage was associated with key environmental parameters describing the runoff impact (salinity, organic matter proxies, terrestrial rock origin metals) and compared to community structures observed during the dry season.

RESULTS

Microbiome biodiversity patterns of the dry season were destructured because of the runoff impact, and land-origin taxa were observed in the coastal areas. After the rainy event, different daily community dynamics were observed locally, with specific microbial taxa explaining these variabilities. Plume dispersal modeling revealed the extent of low salinity areas up to the coral reef area (16 km offshore), but a rapid (< 6 days) recovery to typical steady conditions of the lagoon's hydrology was observed. Conversely, during the same time, some biological components (microbial communities, Chl a) and biogeochemical components (particulate nickel, terrigenous organic matter) of the ecosystem did not recover to values observed during the dry season conditions.

CONCLUSION

The ecosystem resilience of subtropical ecosystems must be evaluated from a multidisciplinary, holistic perspective and over the long term. This allows evaluating the risk associated with a potential continued and long-term disequilibrium of the ecosystem, triggered by the change in the frequency and intensity of extreme climatic events in the era of planetary climatic changes.

Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations

Waterways that drain the Great Barrier Reef catchment area (GBRCA) transport pollutants to marine habitats, provide a critical corridor between freshwater and marine habitats for migratory fish species, and are of high socioecological value. Some of these waterways contain concentrations of pesticide active ingredients (PAIs) that exceed Australian ecotoxicity threshold values (ETVs) for ecosystem protection. In this article, we use a "pathway to harm" model with five key criteria to assess whether the available information supports the hypothesis that PAIs are or could have harmful effects on fish and arthropod populations. Strong evidence of the first three criteria and circumstantial weaker evidence of the fourth and fifth criteria are presented. Specifically, we demonstrate that exceedances of Australian and New Zealand ETVs for ecosystem protection are widespread in the GBRCA, that the PAI contaminated water occurs (spatially and temporally) in important habitats for fisheries, and that there are clear direct and indirect mechanisms by which PAIs could cause harmful effects. The evidence of individuals and populations of fish and arthropods being adversely affected species is more circumstantial but consistent with PAIs causing harmful effects in the freshwater ecosystems of Great Barrier Reef waterways. We advocate strengthening the links between PAI concentrations and fish health because of the cultural values placed on the freshwater ecosystems by relevant stakeholders and Traditional Owners, with the aim that stronger links between elevated PAI concentrations and changes in recreationally and culturally important fish species will inspire improvements in water quality. Integr Environ Assess Manag 2024;00:1-24. © 2023 Commonwealth of Australia and The Commonwealth Scientific and Industrial Research Organisation. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Understanding contaminant exposure risks in nesting Loggerhead sea turtle populations

Queensland loggerhead turtle nest numbers at Mon Repos (MR) indicate population recovery that doesn't occur at Wreck Island (WI). Previous research illustrated that MR and WI turtles forage in different locations, potentially indicating risks differences. Blood, scute, and egg were collected from turtles nesting at MR and WI, with known foraging sites (from concurrent studies). Trace element and organic contaminants were assessed via acid digestion and in vitro cytotoxicity bioassays, respectively. WI turtles had significantly higher scute uranium and blood molybdenum compared to MR turtles, and arsenic was higher in WI turtles foraging north and MR turtles foraging south. Egg and blood titanium, manganese, cadmium, barium, lead, and molybdenum, and scute and egg selenium and mercury significantly correlated. Blood (75 %) extracts produced significant toxicity in vitro in turtle fibroblast cells. In conclusion, reducing chemical exposure at higher risk foraging sites would likely benefit sea turtles and their offspring.

The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone

Crown-of-Thorns Starfish (CoTS) population outbreaks contribute to coral cover decline on Indo-Pacific reefs. On the Great Barrier Reef (GBR), enhanced catchment nutrient loads are hypothesised to increase phytoplankton food for CoTS larvae in the outbreak initiation zone. This study examines whether catchment load reductions will improve water quality in this zone during the larval period. We defined the i) initiation zone's spatial extent; ii) larval stage's temporal extent; and iii) water quality thresholds related to larval food, from published information. We applied these to model simulations, developed to quantify the effect of catchment load reductions on GBR water quality (Baird et al., 2021), and found a consistently weak response of chlorophyll-a, total organic nitrogen and large zooplankton concentrations in the initiation zone. Model results indicate marine and atmospheric forcing are more likely to control the planktonic biomass in this zone, even during major flooding events purported to precede CoTS outbreaks.

A draft genome assembly of reef-building octocoral Heliopora coerulea

Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian.

Identifying innovation discourses for nitrogen management in the sugarcane sector in Great Barrier Reef catchments using Q-methodology

Dissolved inorganic nitrogen (DIN) run-off from sugarcane farms along Australia's Great Barrier Reef (GBR) coast is implicated in poor catchment water quality and putting pressure on reef health. Reducing DIN is the focus of innovative policies to cut pollution and to maximize social benefit across economic sectors. We use Q-methodology to gain insight into discourses present amongst sugarcane sector stakeholders in GBR catchments. Issue statements, which we aligned with concepts from the Theory of Planned Behaviour, were ranked and correlations identified to generate factors that informed our descriptions of discourses. We found four discourse groups we called sector stalwarts, scientific rationalists, economic maximisers, and sector defenders. We also collected respondent demographic data from which we could judge the propensities of respondent groups to identify with different discourses. This information can help industry innovators and policymakers identify the attributes, mindsets, and appropriate language metaphors for engaging stakeholders in reducing catchment pollution.

The Evolution of Coral Reef under Changing Climate: A Scientometric Review

In this scientometric review, we employ the Web of Science Core Collection to assess current publications and research trends regarding coral reefs in relation to climate change. Thirty-seven keywords for climate change and seven keywords for coral reefs were used in the analysis of 7743 articles on coral reefs and climate change. The field entered an accelerated uptrend phase in 2016, and it is anticipated that this phase will last for the next 5 to 10 years of research publication and citation. The United States and Australia have produced the greatest number of publications in this field. A cluster (i.e., focused issue) analysis showed that coral bleaching dominated the literature from 2000 to 2010, ocean acidification from 2010 to 2020, and sea-level rise, as well as the central Red Sea (Africa/Asia), in 2021. Three different types of keywords appear in the analysis based on which are the (i) most recent (2021), (ii) most influential (highly cited), and (iii) mostly used (frequently used keywords in the article) in the field. The Great Barrier Reef, which is found in the waters of Australia, is thought to be the subject of current coral reef and climate change research. Interestingly, climate-induced temperature changes in "ocean warming" and "sea surface temperature" are the most recent significant and dominant keywords in the coral reef and climate change area.

Detection and impact of sewage pollution on South Kohala's coral reefs, Hawai'i

Sewage pollution from on-site sewage disposal systems and injection wells is impacting coral reefs worldwide. Our study documented the presence and impact of sewage on South Kohala's coral reefs, on Hawai'i Island, through benthic water quality and macroalgal sampling (fecal indicator bacteria, nutrients, δ¹⁵N macroalgal tissue), NO₃^- stable isotope mixing models, water motion measurements, and coral reef surveys. Sewage pollution was moderate on the offshore reef from benthic seeps, and water motion mixed and diluted it across the benthos. These conditions likely contribute to the dominance of turf algae cover, and the severity and prevalence of growth anomalies and algal overgrowth on corals. Use of multiple indicators and studying water motion was necessary to assess sewage pollution and identify environmental drivers associated with impaired coral health conditions. Methods used in this study can be utilized by natural resource managers to identify and reduce anthropogenic stressors to coral reefs.

Individual and combined effect of organic eutrophication (DOC) and ocean warming on the ecophysiology of the Octocoral Pinnigorgia flava

Dissolved organic carbon (DOC) enrichment and ocean warming both negatively affect hard corals, but studies on their combined effects on other reef organisms are scarce. Octocorals are likely to become key players in future reef communities, but they are still highly under-investigated with regard to their responses to global and local environmental changes. Thus, we evaluated the individual and combined effects of DOC enrichment (10, 20 and 40 mg L^-1 DOC, added as glucose) and warming (stepwise from 26 to 32 °C) on the widespread Indo-Pacific gorgonian Pinnigorgia flava in a 45-day laboratory experiment. Oxygen fluxes (net photosynthesis and respiration), as well as Symbiodiniaceae cell density and coral growth were assessed. Our results highlight a differential ecophysiological response to DOC enrichment and warming as well as their combination. Individual DOC addition did not significantly affect oxygen fluxes nor Symbiodiniaceae cell density and growth, while warming significantly decreased photosynthesis rates and Symbiodiniaceae cell density. When DOC enrichment and warming were combined, no effect on P. flava oxygen fluxes was observed while growth responded to certain DOC conditions depending on the temperature. Our findings indicate that P. flava is insensitive to the individual effect of DOC enrichment, but not to warming and the two stressors combined. This suggests that, if temperature remains below certain thresholds, this gorgonian species may gain a competitive advantage over coral species that are reportedly more affected by DOC eutrophication. However, under the expected increasing temperature scenarios, it is also likely that this octocoral species will be negatively affected, with potential consequences on community structure. This study contributes to our understanding of the conditions that drive phase shift dynamics in coastal coral reef ecosystemds.

Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services

Freshwater ecosystems, such as wetlands, are among the most impacted by agricultural expansion and intensification through extensive drainage and pollution. There is a pressing need to identify ways of managing agricultural landscapes to ensure food and water security without jeopardising biodiversity and other environmental benefits. Here we examine the potential fish biodiversity and landholder financial benefits arising from the integration of constructed lagoons to improve drainage, flow regulation and habitat connectivity within a sugarcane dominated catchment in north Queensland, Australia. A hybrid approach was used, combining the findings of both fish ecological surveys and a financial cost-benefit analysis. We found that the constructed lagoons supported at least 36 native freshwater fishes (over half of all native freshwater fishes in the region), owing to their depth, vegetated margins, moderate water quality and high connectivity to the Tully River. In addition to biodiversity benefits, we estimated that surrounding sugarcane farms would have financially benefited from reduced flooding of cropland and the elevation of low-lying cropland with deposited spoil excavated from lagoon construction. Improved drainage and flow regulation allowed for improvement in sugarcane yield and elevated land increased gross margins from extending the length of the cane production cycle or enabling a switch from cattle grazing to cane production. Restoring or creating wetlands to reduce flooding in flood-prone catchments is a globally applicable model that could improve both agricultural productivity and aquatic biodiversity, while potentially increasing farm income by attracting payments for provision of ecosystem services.

Nutrient starvation and nitrate pollution impairs the assimilation of dissolved organic phosphorus in coral-Symbiodiniaceae symbiosis

Phosphorus (P) is an essential but limiting nutrient for coral growth due to low concentrations of dissolved inorganic concentrations (DIP) in reef waters. P limitation is often exacerbated when concentrations of dissolved inorganic nitrogen (DIN) increase in the reef. To increase their access to phosphorus, corals can use organic P dissolved in seawater (DOP). They possess phosphatase enzymes that transform DOP into DIP, which can then be taken up by coral symbionts. Although the concentration of DOP in reef waters is much higher than DIP, the dependence of corals on this P source is still poorly understood, especially with different concentrations of DIN in seawater. As efforts to predict the future of corals increase, improved knowledge of the P requirements of corals living under different DIN concentrations may be key to predicting coral health. In this study, we investigated P content and phosphatase activities (PAs) in Stylophora pistillata maintained under nutrient starvation, long-term nitrogen enrichment (nitrate or ammonium at 2 μM) and short-term (few hours) nitrogen pulses. Results show that under nutrient depletion and ammonium-enriched conditions, a significant increase in PAs was observed compared to control conditions, with no change in the N:P ratio of the coral tissue. On the contrary, under nitrate enrichment, there was no increase in PAs compared to control conditions, but an increase in the N:P ratio of the coral tissue. These results suggest that under nitrate enrichment, corals were unable to increase their ability to rely on DOP and replenish their cellular P content. An increase in cellular N:P ratio is detrimental to coral health as it increases the susceptibility of coral bleaching under thermal stress. These results provide an overall view of the P requirements of corals exposed to different nutrient conditions and improve our understanding of the effects of nitrogen enrichment on corals.

Tropical cyclones: what are their impacts on phytoplankton ecology?

Following the passage of a tropical cyclone (TC) the changes in temperature, salinity, nutrient concentration, water clarity, pigments and phytoplankton taxa were assessed at 42 stations from eight sites ranging from the open ocean, through the coastal zone and into estuaries. The impacts of the TC were estimated relative to the long-term average (LTA) conditions as well as before and after the TC. Over all sites the most consistent environmental impacts associated with TCs were an average 41% increase in turbidity, a 13% decline in salinity and a 2% decline in temperature relative to the LTA. In the open ocean, the nutrient concentrations, cyanobacteria and picoeukaryote abundances increased at depths between 100 and 150 m for up to 3 months following a TC. While at the riverine end of coastal estuaries, the predominate short-term response was a strong decline in salinity and phytoplankton suggesting these impacts were initially dominated by advection. The more intermediate coastal water-bodies generally experienced declines in salinity, significant reductions in water clarity, plus significant increases in nutrient concentrations and phytoplankton abundance. These intermediate waters typically developed dinoflagellate, diatom or cryptophyte blooms that elevated phytoplankton biomass for 1-3 months following a TC.

Effects of watershed land use on coastal marine environments: A multiscale exploratory analysis with multiple biogeochemical indicators in fringing coral reefs of Okinawa Island

The analytical spatial scale and selection of biogeochemical indicators affect interpretations of land-use impacts on coastal marine environments. In this study, nine biogeochemical indicators were sampled from 36 locations of coral reefs fringing a subtropical island, and their relationships with watershed land use were assessed by spatial autoregressive models with spatial weight matrixes based on distance thresholds of a few to 30 km. POM-relevant indicators were associated with agricultural and urban lands of watersheds within relatively small ranges (6-14 km), while the concentrations of inorganic nutrients were associated with watersheds within 20 km or more. The macroalgal δ¹⁵N showed a strong relationship with agricultural lands of watersheds within 7 km and urban/forest lands of watersheds within 24 km. These results demonstrate significant effects of land use on the coral reef ecosystems of the island, and the importance of appropriate combinations of analytical scales and biogeochemical indicators.

Climate refugia on the Great Barrier Reef fail when global warming exceeds 3°C

Increases in the magnitude, frequency, and duration of warm seawater temperatures are causing mass coral mortality events across the globe. Although, even during the most extensive bleaching events, some reefs escape exposure to severe stress, constituting potential refugia. Here, we identify present-day climate refugia on the Great Barrier Reef (GBR) and project their persistence into the future. To do this, we apply semi-dynamic downscaling to an ensemble of climate projections released for the IPCC's recent sixth Assessment Report. We find that GBR locations experiencing the least thermal stress over the past 20 years have done so because of their oceanographic circumstance, which implies that longer-term persistence of climate refugia is feasible. Specifically, tidal and wind mixing of warm water away from the sea surface appears to provide relief from warming. However, on average this relative advantage only persists until global warming exceeds ~3°C.

Coral reefs: The good and not so good news with future bright and dark spots for coral reefs through climate change

COMMENTARY ON Present and future bright and dark spots for coral reefs through climate change. This is a commentary on Sully et al., 2022, https://doi.org/10.1111/gcb.16083

Impact of European settlement and land use changes on Great Barrier Reef river catchments reconstructed from long-term coral Ba/Ca records

The increase in sediment and nutrient loads entering the coastal waters of the Great Barrier Reef (GBR) and the associated degradation of water quality represents a major threat to coral reefs. Although the strengthening of preventative management strategies remains a priority, there is a general lack of terrestrial runoff baseline information with respect to the spatial and temporal severity of disturbances associated with ongoing European-style land use practices. Here we use new and existing high-resolution coral Ba/Ca and luminescence records from the central Cairns region to the southern GBR shelf to reconstruct sediment fluxes discharged into the GBR from before European settlement in the 1860s to the present-day. Since the commencement of European settlement in the 1860s we document a tripling of flood-plume suspended sediment loads delivered by the Burdekin River to the GBR lagoon relative to 'natural' pre-European baseline levels. We show that this is indicative of a much more extreme degradation of the river catchments than hitherto appreciated with intensified discharge events particularly from the central and southern catchments carrying higher sediment loads. More-over from the 1930s onwards the Burdekin River, the largest source of both sediment and freshwater to the GBR, has also exhibited a progressive northwards expansion of its flood plume. This, together with increased variability of freshwater inputs indicated by coral luminescence records, now shows that the inner GBR not only continues to be impacted by increasing sediment/nutrient loads but is also subject to higher intensity river discharge events due to the loss of ground cover causing increased overland runoff and erosion.

Volatility in coral cover erodes niche structure, but not diversity, in reef fish assemblages

The world's coral reefs are experiencing increasing volatility in coral cover, largely because of anthropogenic environmental change, highlighting the need to understand how such volatility will influence the structure and dynamics of reef assemblages. These changes may influence not only richness or evenness but also the temporal stability of species' relative abundances (temporal beta-diversity). Here, we analyzed reef fish assemblage time series from the Great Barrier Reef to show that, overall, 75% of the variance in abundance among species was attributable to persistent differences in species' long-term mean abundances. However, the relative importance of stochastic fluctuations in abundance was higher on reefs that experienced greater volatility in coral cover, whereas it did not vary with drivers of alpha-diversity. These findings imply that increased coral cover volatility decreases temporal stability in relative abundances of fishes, a transformation that is not detectable from static measures of biodiversity.

Temporal variation of imidacloprid concentration and risk in waterways discharging to the Great Barrier Reef and potential causes

The widely used neonicotinoid insecticide imidacloprid has emerged as a significant risk to surface waters and the diverse aquatic and terrestrial fauna these ecosystems support. While herbicides have been the focus of research on pesticides in Australia's Great Barrier Reef catchment area, imidacloprid has been monitored in catchments across the region since 2009. This study assessed the spatial and temporal dynamics of imidacloprid in 14 waterways in Queensland, Australia over seven years in relation to land use and concentration trends. Imidacloprid could be quantified (i.e., concentrations were greater than the limit of reporting) in approximately 54% of all samples, but within individual waterways imidacloprid was quantified in 0 to 99.7% of samples. The percent of each catchment used to grow bananas, sugar cane and urban explained approximately 45% of the variation in imidacloprid concentrations and waterway discharge accounted for another 18%. In six waterways there were significant increases in imidacloprid concentrations and the frequency and magnitude of exceedances of aquatic ecosystem protection guidelines over time. Overall, the risk posed by imidacloprid was low with 74% of samples protecting at least 99% of species but it was estimated that upto 42% of aquatic species would experience harmful chronic effects. Potential explanations of the changes in imidacloprid were examined. Not surprisingly, the only plausible explanation of the increases was increased use of imidacloprid. While field-based measurement of the effects of imidacloprid are limited in the Great Barrier Reef Catchment Area (GBRCA) the risk assessment indicates that biological harm to aquatic organisms is highly likely. Action to reduce imidacloprid concentrations in the GBRCA waterways is urgently required to reverse the current trends and mitigate environmental impacts.

Isotopic evidence for nitrate sources and controls on denitrification in groundwater beneath an irrigated agricultural district

The application of N fertilisers to enhance crop yield is common throughout the world. Many crops have historically been, or are still, fertilised with N in excess of the crop requirements. A portion of the excess N is transported into underlying aquifers in the form of NO₃^-, which is potentially discharged to surface waters. Denitrification can reduce the severity of NO₃^- export from groundwater. We sought to understand the occurrence and hydrogeochemical controls on denitrification in NO₃^--rich aquifers beneath the Emerald Irrigation Area (EIA), Queensland, Australia, a region of extensive cotton and cereal production. Multiple stable isotope (in H₂O, NO₃^-, DIC, DOC and SO₄^2-) and radioactive isotope (³H and ³⁶Cl) tracers were used to develop a conceptual N process model. Fertiliser-derived N is likely incorporated and retained in the soil organic N pool prior to its mineralisation, nitrification, and migration into aquifers. This process, alongside the near absence of other anthropogenic N sources, results in a homogenised groundwater NO₃^- isotopic signature that allows for denitrification trends to be distinguished. Regional-scale denitrification manifests as groundwater becomes increasingly anaerobic during flow from an upgradient basalt aquifer to a downgradient alluvial aquifer. Dilution and denitrification occurs in localised electron donor-rich suboxic hyporheic zones beneath leaking irrigation channels. Using approximated isotope enrichment factors, estimates of regional-scale NO₃^- removal ranges from 22 to 93% (average: 63%), and from 57 to 91% (average: 79%) beneath leaking irrigation channels. In the predominantly oxic upgradient basalt aquifer, raised groundwater tables create pathways for NO₃^- to be transported to adjacent surface waters. In the alluvial aquifer, the transfer of NO₃^- is limited both physically (through groundwater-surface water disconnection) and chemically (through denitrification). These observations underscore the need to understand regional- and local-scale hydrogeological processes when assessing the impacts of groundwater NO₃^- on adjacent and end of system ecosystems.

Detecting long temporal trends of photosystem II herbicides (PSII) in the Great Barrier Reef lagoon

The Marine Monitoring Program (MMP) was established in 2005 to monitor the inshore health of the Great Barrier Reef (GBR) and evaluate progress towards water quality objectives in Reef Water Quality Improvement Plans. The MMP provides information on the magnitude and spatial extent of pesticide contamination, reports on temporal variability, and provides a risk assessment for the biota in the GBR lagoon. However, long-term trends in pesticide contamination of inshore marine waters over the entire monitoring period (2005-2018) have not been assessed. We used up to 14 years of monitoring data for five PSII herbicides (ametryn, atrazine, diuron, tebuthiuron, and hexazinone) to conduct temporal trend analyses at 11 inshore monitoring sites. The trend analyses suggested increasing significant trends (p < 0.05) for the five PSII herbicides concentrations at several monitoring sites. Power analysis indicated that monitoring sites with over 10 years of monitoring data had convincing results with 80% power.

Microplastic contamination assessment in water and economic fishes in different trophic guilds from an urban water supply reservoir after flooding

Rain and floods events are responsible for the transport of microplastics in freshwater ecosystems, yet to date, rare study has examined microplastics pollution in urban water supply reservoirs during such events. In this study, we investigated the concentrations and characteristics of microplastic in water and economic fish species with different feeding guilds in the Dafangying Reservoir, an important source of drinking water for Hefei city. Microplastic concentrations in water were relatively higher than that in natural lakes, indicating abundant microplastic contaminants input through overland runoff triggered by flooding. Our results detected five types (fiber, debris, film, microbead and particle) and six colors (black, transparent, blue, yellow, red and green) of microplastics in water samples. Fiber accounted for the dominant shape, which may result from the household sewage from washing clothes and desquamated fiber transported by wind and overland runoff. Meanwhile, transparent was the predominant microplastic color, which can be ascribe to the widely use of intentionally manufactured transparent disposable plastic commodities in cities. Then in fish samples, the microplastic concentrations ranged from 8.75 to 51.3 items/individual in fish guts, and 9.5-52.6 items/individual in fish gills. Our results demonstrated significant higher microplastic concentrations in planktivorous and herbivorous species. The filter feeding capture mode, i.e., engulfing floating prey through frequently drawing in large volume of water confused with microplastics, may result in the higher microplastic concentrations of planktivorous fishes. Due to the dense microplastics adhering on plant surface, herbivorous fishes can concentrate higher microplastics abundance through the ingestion of macrophytes. According to the biological concentration factor (BCF), all the determined microplastics gave BCF far below 1, suggesting the low bioaccumulation capacity of microplastics in fish species.

A conceptual model of nitrogen dynamics for the Great Barrier Reef catchments

Nitrogen (N) from anthropogenic sources has been identified as a major pollutant of the Great Barrier Reef (GBR), Australia. We developed a conceptual framework to synthesise and visualise the fate and transport of N from the catchments to the sea from a literature review. The framework was created to fit managers and policymakers' requirements to reduce N in the GBR catchments. We used this framework to determine the N stocks and transformations (input, sources, and outputs) for ecosystems commonly found in the GBR: rainforests, palustrine wetlands, lakes, rivers (in-stream), mangroves and seagrasses. We included transformations of N such as nitrogen fixation, nitrification, denitrification, mineralisation, anammox, sedimentation, plant uptake, and food web transfers. This model can be applied to other ecosystems to understand the transport and fate of N within and between catchments. Importantly, this approach can guide management actions that attenuate N at different scales and locations within the GBR ecosystems. Finally, when combined with local hydrological modelling, this framework can be used to predict outcomes of management activities.

Modelled estimates of dissolved inorganic nitrogen exported to the Great Barrier Reef lagoon

Measuring stream pollutant loads across the Great Barrier Reef (GBR) catchment area (GBRCA) is challenging due to the spatial extent, climate variability, changing land use and evolving land management practices, and cost. Thus, models are used to estimate baseline pollutant loads. The eWater Source modelling framework is coupled with agricultural paddock scale models and the GBR Dynamic SedNet plugin to simulate dissolved inorganic nitrogen (DIN) generation and transport processes across the GBRCA. Catchment scale monitoring of flow and loads are used to calibrate the models, and performance is assessed qualitatively and quantitatively. Modelling indicates almost half (47%) of the total modelled DIN load exported to the GBR lagoon is from the Wet Tropics, and almost half of the total modelled DIN load is from sugarcane areas. We demonstrate that using locally developed, customised models coupled with a complementary monitoring program can produce reliable estimates of pollutant loads.

Transferring and extrapolating estimates of cost-effectiveness for water quality outcomes: Challenges and lessons from the Great Barrier Reef

In recent decades the declining health of the Great Barrier Reef has led to a number of government policies being implemented to reduce pollutant loads from the adjacent agricultural-based catchments. There is increasing use of cost-effectiveness measures to help prioritise between different programs and actions to reduce pollutants, given limited resources and the scale of the issues. However there are a small number of primary studies available, and the consistency of cost-effectiveness measures and their application is limited, particularly given the various uncertainties that underlie the measures. Unlike Europe and the United States of America water policy or benefit transfer approaches, there are no procedural guidance studies that must be followed in the context of the Great Barrier Reef catchments. In this study we review the use of cost effectiveness estimates for pollutant reduction into the Great Barrier Reef in the context of a benefit transfer framework, where estimates of costs from a particular case study are transferred to various scenarios within different catchments. The conclusions suggest a framework be developed for the Great Barrier Reef, which is consistent, transparent, and rigorous.

A transdisciplinary approach supports community-led water quality monitoring in river basins adjacent to the Great Barrier Reef, Australia

Water quality monitoring programs (WQMPs) are crucial for assessment of water quality in river basins where agricultural intensification and development raise concerns in freshwater and marine environments. WQMPs if supported by scientists and local communities, and if based on the knowledge needs of all stakeholders, can provide vital information supporting resource management actions. Our paper focuses on the transdisciplinary development and implementation of a community-led pilot WQMP for the Tully River basin, adjacent to the Great Barrier Reef (GBR). The community-led pilot WQMP was established to fill some knowledge gaps identified during development of the Tully Water Quality Improvement Plan (WQIP) and to provide opportunities for active stakeholder participation in the monitoring. Results indicated some water quality parameters (i.e. nitrates and total phosphorus) had higher than expected values and exceeded state water quality guidelines. Hence, the results provided an evidence base for freshwater quality objective development to conserve, protect and improve water quality conditions in this basin and GBR. Leadership of Indigenous people in the pilot WQMP recognizes their deep desire to improve water resources outcomes and to care for country and people.

A benthic light index of water quality in the Great Barrier Reef, Australia

Good water quality is essential to the health of marine ecosystems, yet current metrics used to track water quality in the Great Barrier Reef are not strongly tied to ecological outcomes. There is a need for a better water quality index (WQI). Benthic irradiance, the amount of light reaching the seafloor, is critical for coral and seagrass health and is strongly affected by water quality. It therefore represents a strong candidate for use as a water quality indicator. Here, we introduce a new index based on remote sensing benthic light (bPAR) from ocean color. Resulting bPAR index timeseries, based on the extent to which the observed bPAR fell short of the locally- and seasonally-specific optimum, showed strong spatial and temporal variability, which was consistent with the dynamics that govern changes in water clarity in the Great Barrier Reef. Our new index is ecologically relevant, responsive to changes in light availability and provides a robust metric that may complement current Great Barrier Reef water quality metrics.

Catchment to sea connection: Impacts of terrestrial run-off on benthic ecosystems in American Samoa

Variation in water quality can directly affect the composition of benthic assemblages on coral reefs. Yet, few studies have directly quantified nutrient and suspended particulate matter (SPM) to examine their potential impacts on benthic community structure, especially around high oceanic islands. We assessed the spatio-temporal variation of nutrients and SPM across six sites in American Samoa over a 12-month period and used exploratory path analysis to relate dissolved inorganic nutrients, land use, and natural and anthropogenic drivers to benthic assemblages on adjacent shallow reefs. Multivariate analyses showed clear gradients in nutrient concentrations, sediment accumulation and composition, and benthic structure across watersheds. Instream nutrients and land uses positively influenced reef flat nutrient concentrations, while benthic assemblages were best predicted by wave exposure, runoff, stream phosphate and dissolved inorganic nitrogen loads. Identifying locality-specific drivers of water quality and benthic condition can support targeted management in American Samoa and in other high islands.

Water quality challenges associated with industrial logging of a karst landscape: Guadalcanal, Solomon Islands

Human disturbance of karst landscapes in tropical volcanic islands present a unique challenge for understanding sediment transport to the coastal zone. Here we present the first evidence of urban drinking water quality impacts from industrial logging in the Solomon Islands. Despite only 6% of the Honiara's drinking water catchment being disturbed by logging, rhodamine dye tracers demonstrated complex karst sinkholes that led to high suspended sediment concentrations being transported from neighbouring Kovi catchment into the Kongulai water supply offtake point for Honiara. This has resulted in the exceedance of practical treatment thresholds of 20 NTU 9.5% of the time, leading to water supply for the majority of Honiara's residents being unavailable for 58 days in 2019. This work highlights the cost-benefit disparity between industrial logging yielding minimal short-term economic yields in comparison to on-going broader impacts of increased coastal sediment transport while restricting water supply to a developing nation's capital.

The changing face of science communication, technology, extension and improved decision-making at the farm-water quality interface

In recent decades, significant advances have been made in understanding the generation, fates and consequences of water quality pollutants in the Great Barrier Reef ecosystem. However, skepticism and lack of trust in water quality science by farming stakeholders has emerged as a significant challenge. The ongoing failures of both compulsory and particularly voluntary practices to improve land management and reduce diffuse agricultural pollution from the Great Barrier Reef catchment underlines the need for more effective communication of water quality issues at appropriate decision-making scales to landholders. Using recent Great Barrier Reef catchment experiences as examples, we highlight several emerging themes and opportunities in using technology to better communicate land use-water quality impacts and delivery of actionable knowledge to farmers, specifically supporting decision-making, behavior change, and the spatial identification of nutrient generation 'hotspots' in intensive agriculture catchments. We also make recommendations for co-designed monitoring-extension platforms involving farmers, governments, researchers, and related agencies, to cut across stakeholder skepticism, and achieve desired water quality and ecosystem outcomes.

Impacts of coastal land use change in the wet tropics on nearshore coral reefs: Case studies from Papua New Guinea

Logging and plantation agriculture are vital to economies and livelihoods in tropical nations, including Papua New Guinea. To meet global demand, hundreds of thousands of ha of diverse natural habitat have been logged, cleared and replaced with monoculture crops. Resulting hydrological changes have increased sediment, nutrient and pesticide runoff, impacting down-stream habitats. Here, case studies from Kimbe Bay (New Britain) and Mullins Harbour (Milne Bay), examine effects on nearshore coral reefs. In both places, logging and oil palm development had destabilized soils and removed or degraded riparian vegetation. Downstream, nearshore reefs had high silt levels, which, coincident with minor coral bleaching and predation by crown-of-thorns starfish, were correlated with high levels of coral mortality and low coral species richness. Sediment and related impacts can be reduced by effective catchment management, such as avoiding steep slopes, expanding stream and coastal buffer zones, minimizing fertilizer and pesticide use, monitoring and reactive management.

Collapsing ecosystem functions on an inshore coral reef

Ecosystem functions underpin productivity and key services to humans, such as food provision. However, as the severity of environmental stressors intensifies, it is becoming increasingly unclear if, and to what extent, critical functions and services can be sustained. This issue is epitomised on coral reefs, an ecosystem at the forefront of environmental transitions. We provide a functional profile of a coral reef ecosystem, linking time-series data to quantified processes. The data reveal a prolonged collapse of ecosystem functions in this previously resilient system. The results suggest that sediment accumulation in algal turfs has led to a decline in resource yields to herbivorous fishes and a decrease in fish-based ecosystem functions, including a collapse of both fish biomass and productivity. Unfortunately, at present, algal turf sediment accumulation is rarely monitored nor managed in coral reef systems. Our examination of functions through time highlights the value of directly assessing functions, their potential vulnerability, and the capacity of algal turf sediments to overwhelm productive high-diversity coral reef ecosystems.

Impact of catchment-derived nutrients and sediments on marine water quality on the Great Barrier Reef: An application of the eReefs marine modelling system

Water quality of the Great Barrier Reef (GBR) is determined by a range of natural and anthropogenic drivers that are resolved in the eReefs coupled hydrodynamic - biogeochemical marine model forced by a process-based catchment model, GBR Dynamic SedNet. Model simulations presented here quantify the impact of anthropogenic catchment loads of sediments and nutrients on a range of marine water quality variables. Simulations of 2011-2018 show that reduction of anthropogenic catchment loads results in improved water quality, especially within river plumes. Within the 16 resolved river plumes, anthropogenic loads increased chlorophyll concentration by 0.10 (0.02-0.25) mg Chl m^-3. Reductions of anthropogenic loads following proposed Reef 2050 Water Quality Improvement Plan targets reduced chlorophyll concentration in the plumes by 0.04 (0.01-0.10) mg Chl m^-3. Our simulations demonstrate the impact of anthropogenic loads on GBR water quality and quantify the benefits of improved catchment management.

The tropical Pacific Oceanscape: Current issues, solutions and future possibilities

Marine ecosystems across the world's largest ocean - the Pacific Ocean - are being increasingly affected by stressors such as pollution, overfishing, ocean acidification, coastal development and warming events coupled with rising sea levels and increasing frequency of extreme weather. These anthropogenic-driven stressors, which operate cumulatively at varying spatial and temporal scales, are leading to ongoing and pervasive degradation of many marine ecosystems in the Pacific Island region. The effects of global warming and ocean acidification threaten much of the region and impact on the socio-cultural, environmental, economic and human health components of many Pacific Island nations. Simultaneously, resilience to climate change is being reduced as systems are overburdened by other stressors, such as marine and land-based pollution and unsustainable fishing. Consequently, it is important to understand the vulnerability of this region to future environmental scenarios and determine to what extent management actions can help protect, and rebuild ecosystem resilience and maintain ecosystem service provision. This Special Issue of papers explores many of these pressures through case studies across the Pacific Island region, and the impacts of individual and cumulative pressures on the condition, resilience and survival of ecosystems and the communities that depend on them. The papers represent original work from across the tropical Pacific oceanscape, an area that includes 22 Pacific Island countries and territories plus Hawaii and the Philippines. The 39 papers within provide insights on anthropogenic pressures and habitat responses at local, national, and regional scales. The themes range from coastal water quality and human health, assessment of status and trends for marine habitats (e.g. seagrass and coral reefs), and the interaction of local pressures (pollution, overfishing) with increasing temperatures and climate variability. Studies within the Special Issue highlight how local actions, monitoring, tourism values, management, policy and incentives can encourage adaptation to anthropogenic impacts. Conclusions identify possible solutions to support sustainable and harmonious environment and social systems in the unique Pacific Island oceanscape.

Large-scale interventions may delay decline of the Great Barrier Reef

On the iconic Great Barrier Reef (GBR), the cumulative impacts of tropical cyclones, marine heatwaves and regular outbreaks of coral-eating crown-of-thorns starfish (CoTS) have severely depleted coral cover. Climate change will further exacerbate this situation over the coming decades unless effective interventions are implemented. Evaluating the efficacy of alternative interventions in a complex system experiencing major cumulative impacts can only be achieved through a systems modelling approach. We have evaluated combinations of interventions using a coral reef meta-community model. The model consisted of a dynamic network of 3753 reefs supporting communities of corals and CoTS connected through ocean larval dispersal, and exposed to changing regimes of tropical cyclones, flood plumes, marine heatwaves and ocean acidification. Interventions included reducing flood plume impacts, expanding control of CoTS populations, stabilizing coral rubble, managing solar radiation and introducing heat-tolerant coral strains. Without intervention, all climate scenarios resulted in precipitous declines in GBR coral cover over the next 50 years. The most effective strategies in delaying decline were combinations that protected coral from both predation (CoTS control) and thermal stress (solar radiation management) deployed at large scale. Successful implementation could expand opportunities for climate action, natural adaptation and socioeconomic adjustment by at least one to two decades.

Sediment and nutrient sources and sinks in a wet-dry tropical catchment draining to the Great Barrier Reef

Many tropical river systems have altered water quality due to human land use, impacting the biodiversity of freshwater and coastal ecosystems. Long-term, catchment-scale monitoring is needed to understand pollutant sources, controls, and trends. This 12-year study monitored baseflow and flood event nutrient and sediment concentrations, and estimated sediment loads across the Normanby Basin in northern Australia. Suspended sediment concentrations and yields were highest in upper catchment areas where cattle grazing occurred on erosion-prone sodic soils. Mid- and lower catchment rivers and floodplains were a sink for sediments and nutrients, trapping around 75% of suspended sediments during events. Clays (<4 μm) were preferentially transported to the estuary, with an estimated 46% sediment delivery ratio. In the estuary, suspended sediment concentrations were influenced by tidal resuspension processes and there were significant sources of DIN. These findings can help prioritise land management investments for the protection of Great Barrier Reef and freshwater ecosystems.

High turbidity levels alter coral reef fish movement in a foraging task

Sensory systems allow animals to detect and respond to stimuli in their environment and underlie all behaviour. However, human induced pollution is increasingly interfering with the functioning of these systems. Increased suspended sediment, or turbidity, in aquatic habitats reduces the reactive distance to visual signals and may therefore alter movement behaviour. Using a foraging task in which fish (Rhinecanthus aculeatus) had to find six food sites in an aquarium, we tested the impact of high turbidity (40-68 NTU; 154 mg/L) on foraging efficiency using a detailed and novel analysis of individual movements. High turbidity led to a significant decrease in task efficacy as fish took longer to begin searching and find food, and they travelled further whilst searching. Trajectory analyses revealed that routes were less efficient and that fish in high turbidity conditions were more likely to cover the same ground and search at a slower speed. These results were observed despite the experimental protocol allowing for the use of alternate sensory systems (e.g. olfaction, lateral line). Given that movement underlies fundamental behaviours including foraging, mating, and predator avoidance, a reduction in movement efficiency is likely to have a significant impact on the health and population dynamics of visually-guided fish species.

Divergent Patterns of Bacterial Community Structure and Function in Response to Estuarine Output in the Middle of the Bohai Sea

Understanding environment-community relationships under shifting environmental conditions helps uncover mechanisms by which environmental microbial communities manage to improve ecosystem functioning. This study investigated the microbial community and structure near the Yellow Sea River estuary in 12 stations across the middle of the Bohai Sea for over two seasons to elucidate the influence of estuarine output on them. We found that the dominant phyla in all stations were Proteobacteria, Cyanobacteria, Bacteroidetes, Actinobacteria, and Planctomycetes. Alpha-diversity increased near the estuary and bacterial community structure differed with variation of spatiotemporal gradients. Among all the environmental factors surveyed, temperature, salinity, phosphate, silicon, nitrate, and total virioplankton abundance played crucial roles in controlling the bacterial community composition. Some inferred that community functions such as carbohydrate, lipid, amino acid metabolism, xenobiotics biodegradation, membrane transport, and environmental adaptation were much higher in winter; energy and nucleotide metabolism were lower in winter. Our results suggested that estuarine output had a great influence on the Bohai Sea environment and changes in the water environmental conditions caused by estuarine output developed distinctive microbial communities in the middle of the Bohai Sea. The distinctive microbial communities in winter demonstrated that the shifting water environment may stimulate changes in the diversity and then strengthen the predicted functions.

Dimethylsulphoniopropionate as a water quality indicator of coral bleaching: Implications for monitoring studies on the Great Barrier Reef

Short term stress experiments with dissolved inorganic phosphorus (DIP) and tripolyphosphate (TPP) have been carried out on the staghorn coral Acropora intermedia, collected from Heron Island in the southern Great Barrier Reef, at low and elevated seawater temperatures. Zooxanthellae, chlorophyll a, intracellular and tissue dimethylsulfoniopropionate (DMSP), and extracellular DMSP production were measured to assess the level of stress on A. intermedia at different winter and summer seasons from 2001 to 2003. Whilst no significant changes were measured in these stress indicators in 2001 and 2003, significant changes occurred in winter 2002, reflecting natural stresses on A. intermedia in the field, and stress from added DIP and TPP at high seawater temperatures. These stresses caused corals to bleach, whilst extracellular DMSP, intracellular and tissue DMSP concentrations increased, reflecting the antioxidant role of DMSP in the coral zooxanthellae and coral host to combat stress. These results have important implications for future research in the GBR.

Editorial - Virtual special issue (VSI) green turtles as silent sentinels of pollution in the Great Barrier Reef - Rivers to Reef to Turtles project

This special issue of STOTEN is dedicated to presenting the results of the WWF-Australia "Rivers to Reef to Turtles" project, which focused on investigating pollutants in the environment, food and bodies of green turtles (Chelonia mydas) on the Great Barrier Reef (GBR). The project brought together organic and inorganic trace chemical analysis, bioanalytical tools and individual health monitoring to investigate potential causes of an unusual mortality event in 2012. Together, the ten studies in this special issue highlight the shortcomings of current chemical monitoring and impact assessment programmes, which are focused on a limited number of prioritised chemicals and fail to account for the incredible diversity of toxicants released by human activities. It is essential that future management efforts consider the impact of these contaminants on the GBR, already under threat from global warming and sediment and nutrient runoff. Understanding the impact that chemical contaminants have on turtles not only informs green turtle conservation but can also, as they are sensitive and long-lived bioindicators of environmental health, guide efforts to protect, conserve and restore marine ecosystems such as the GBR.

Extreme storms cause rapid but short-lived shifts in nearshore subtropical bacterial communities

Climate change scenarios predict tropical cyclones will increase in both frequency and intensity, which will escalate the amount of terrestrial run-off and mechanical disruption affecting coastal ecosystems. Bacteria are key contributors to ecosystem functioning, but relatively little is known about how they respond to extreme storm events, particularly in nearshore subtropical regions. In this study, we combine field observations and mesocosm experiments to assess bacterial community dynamics and changes in physicochemical properties during early- and late-season tropical cyclones affecting Okinawa, Japan. Storms caused large and fast influxes of freshwater and terrestrial sediment - locally known as red soil pollution - and caused moderate increases of macronutrients, especially SiO₂ and PO₄ ^3-, with up to 25 and 0.5 μM respectively. We detected shifts in relative abundances of marine and terrestrially derived bacteria, including putative coral and human pathogens, during storm events. Soil input alone did not substantially affect marine bacterial communities in mesocosms, indicating that other components of run-off or other storm effects likely exert a larger influence on bacterial communities. The storm effects were short-lived and bacterial communities quickly recovered following both storm events. The early- and late-season storms caused different physicochemical and bacterial community changes, demonstrating the context-dependency of extreme storm responses in a subtropical coastal ecosystem.

Toxicity of the herbicides diuron, propazine, tebuthiuron, and haloxyfop to the diatom Chaetoceros muelleri

Conventional photosystem II (PSII) herbicides applied in agriculture can pose significant environmental risks to aquatic environments. In response to the frequent detection of these herbicides in the Great Barrier Reef (GBR) catchment area, transitions towards 'alternative' herbicides are now widely supported. However, water quality guideline values (WQGVs) for alternative herbicides are lacking and their potential ecological impacts on tropical marine species are generally unknown. To improve our understanding of the risks posed by some of these alternative herbicides on marine species under tropical conditions, we tested the effects of four herbicides on the widely distributed diatom Chaetoceros muelleri. The PSII herbicides diuron, propazine, and tebuthiuron induced substantial reductions in both 24 h effective quantum yields (ΔF/Fm') and 3-day specific growth rates (SGR). The effect concentrations, which reduced ΔF/Fm' by 50% (EC50), ranged from 4.25 µg L-1 diuron to 48.6 µg L-1 propazine, while the EC50s for SGR were on average threefold higher, ranging from 12.4 µg L-1 diuron to 187 µg L-1 tebuthiuron. Our results clearly demonstrated that inhibition of ΔF/Fm' in PSII is directly linked to reduced growth (R2 = 0.95) in this species, further supporting application of ΔF/Fm' inhibition as a valid bioindicator of ecological relevance for PSII herbicides that could contribute to deriving future WQGVs. In contrast, SGR and ΔF/Fm' of C. muelleri were nonresponsive to the non-PSII herbicide haloxyfop at the highest concentration tested (4570 µg L-1), suggesting haloxyfop does not pose a risk to C. muelleri. The toxicity thresholds (e.g. no effect concentrations; NECs) identified in this study will contribute to the derivation of high-reliability marine WQGVs for some alternative herbicides detected in GBR waters and support future assessments of the cumulative risks of complex herbicide mixtures commonly detected in coastal waters.

Lethal and sub-lethal effects of environmentally relevant levels of imidacloprid pesticide to Eastern School Prawn, Metapenaeus macleayi

Pesticides are frequently employed to enhance agricultural production. Neonicotinoid pesticides (including imidacloprid) are often used to control sucking insects but have been shown to impact aquatic crustaceans. Imidacloprid is highly water soluble and has been detected in estuaries where it has been applied in adjacent catchments. We examined the impact of environmentally relevant concentrations of imidacloprid on Eastern School Prawn (Metapenaeus macleayi), an important exploited crustacean in Australia. Prawns were held for 8 days in estuarine water containing 0-4 μg L^-1 of imidacloprid to assess potential lethal and non-lethal impacts. There was a non-linear relationship between exposure concentration and tissue concentration, with tissue concentrations peaking at exposures of 1.4 μg L^-1 (1.16 to 1.64 μg L^-1, 90% C.I.). There was no evidence for direct mortality associated with imidacloprid exposure, but exposure did influence the organism metabolome which likely reflects alterations in metabolic homeostasis, such as changes in the fatty acid composition which indicate a shift in lipid homeostasis. There was a positive correlation between exposure concentration and moulting frequency. Shedding of the exoskeleton may represent a mechanism through which prawns can expel the contaminant from their bodies. These results indicate that prawns experience several different sub-lethal effects when exposed to these pesticides, which may have implications for the health of populations.

Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, north-eastern Australia

While the ecosystem of the Great Barrier Reef (GBR), north-eastern Australia, is being threatened by the elevated levels of sediments and nutrients discharged from adjacent coastal river systems, the source of these detrimental pollutants are not well understood. Here we used a combined isotopic (δ¹³C, δ¹⁵N) and geochemical (Zn, Pt and S) signatures and stable isotope analysis in R (SIAR) mixing model to estimate the contribution of different land uses to the sediment and associated particulate nitrogen delivered to the Johnstone River. Results showed that rainforest was the largest contributor of suspended and bed sediments in the river estuary (both 33.1%), followed by banana (26.7%, 20.4%), sugarcane (21.5%, 21.4%) and grazing (18.7%, 25.1%). However, bananas and sugarcane land uses had the highest contribution to sediments delivered to the coast per unit of area. This will help land managers to prioritise on-ground activities to improve water quality in the GBR lagoon.

Combining weed efficacy, economics and environmental considerations for improved herbicide management in the Great Barrier Reef catchment area

The current Australian sugarcane industry transition toward adoption of an 'alternative' herbicide strategy as part of improved environmental stewardship is increasingly complicated by recent farming system, regulatory and herbicidal product changes. This study quantified and compared the efficacy, economic costs and environmental risk profiles of a range of established, emerging, and recently registered pre-emergent herbicides across field trials in the Wet Tropics region of North Queensland. Several herbicides were effective on certain weed species, but lacked broad spectrum control. Better efficacy results from products with multiple active ingredients (i.e., imazapic-hexazinone) demonstrated the benefits of using mixtures of active ingredients to widen the spectrum of weed control efficacy. All tested pre-emergent herbicides behaved quite similarly in terms of their propensity for off-site movement in water (surface runoff losses generally >10% of active applied), with their losses largely driven by their application rate. Herbicides with lower application rates consistently contributed less to the total herbicide loads measured in surface runoff. Results demonstrated alternative choices from the more environmentally problematic herbicides (such as diuron) are available with effective alternative formulations providing between 4 and 29 times less risk than the traditional diuron-hexazinone 'full rate'. However, considerable challenges still face canegrowers in making cost-effective decisions on sustainable herbicide selection. Additional research and effective grower extension are required to address information gaps in issues such as specific weed control efficacy of alternative herbicides and potential blending of some herbicides for more effective broad spectrum weed control, while also minimising environmental risks.

Sources, presence and potential effects of contaminants of emerging concern in the marine environments of the Great Barrier Reef and Torres Strait, Australia

Current policy and management for marine water quality in the Great Barrier Reef (GBR) in north-eastern Australia primarily focusses on sediment, nutrients and pesticides derived from diffuse source pollution related to agricultural land uses. In addition, contaminants of emerging concern (CECs) are known to be present in the marine environments of the GBR and the adjacent Torres Strait (TS). Current and projected agricultural, urban and industrial developments are likely to increase the sources and diversity of CECs being released into these marine ecosystems. In this review, we evaluate the sources, presence and potential effects of six different categories of CECs known to be present, or likely to be present, in the GBR and TS marine ecosystems. Specifically, we summarize available monitoring, source and effect information for antifouling paints; coal dust and particles; heavy/trace metals and metalloids; marine debris and microplastics; pharmaceuticals and personal care products (PPCPs); and petroleum hydrocarbons. Our study highlights the lack of (available) monitoring data for most of these CECs, and recommends: (i) the inclusion of all relevant environmental data into integrated databases for building marine baselines for the GBR and TS regions, and (ii) the implementation of local, targeted monitoring programs informed by predictive methods for risk prioritization. Further, our spatial representation of the known and likely sources of these CECs will contribute to future ecological risk assessments of CECs to the GBR and TS marine environments, including risks relative to those identified for sediment, nutrients and pesticides.

Toxicity of ten herbicides to the tropical marine microalgae Rhodomonas salina

Herbicide contamination of nearshore tropical marine ecosystems is widespread and persistent; however, risks posed by most ‘alternative’ herbicides to tropical marine microalgae remain poorly understood. Experimental exposures of the important but understudied microalgae Rhodomonas salina to seven individual Photosystem II (PSII) inhibitor herbicides (diuron, metribuzin, hexazinone, tebuthiuron, bromacil, simazine, propazine) led to inhibition of effective quantum yield (ΔF/F_m′) and subsequent reductions in specific growth rates (SGR). The concentrations which reduced ΔF/F_m′ by 50% (EC₅₀) ranged from 1.71-59.2 µg L⁻¹, while the EC₅₀s for SGR were 4-times higher, ranging from 6.27-188 µg L⁻¹. Inhibition of ΔF/F_m′ indicated reduced photosynthetic capacity, and this correlated linearly with reduced SGR (R² = 0.89), supporting the application of ∆F/F_m’ inhibition as a robust and sensitive indicator of sub-lethal toxicity of PSII inhibitors for this microalga. The three non-PSII inhibitor herbicides (imazapic, haloxyfop and 2,4-Dichlorophenoxyacetic acid (2,4-D)) caused low or no toxic responses to the function of the PSII or growth at the highest concentrations tested suggesting these herbicides pose little risk to R. salina. This study highlights the suitability of including R. salina in future species sensitivity distributions (SSDs) to support water quality guideline development for the management of herbicide contamination in tropical marine ecosystems.

Succession of delayed fluorescence correlated with coral bleaching in the hermatypic coral Acropora tenuis

We investigated coral bleaching by monitoring colour changes and measuring the delayed fluorescence (DF) of symbiotic dinoflagellates in the hermatypic coral Acropora tenuis, exposed to 1.0 μg/L Irgarol 1051 (photosystem II herbicide) for 14 d. The Irgarol concentration corresponded to those from international port regions of the world. The coral colour and DFs under the control treatment were stable throughout the experiment, whereas under the Irgarol treatment the corals showed gradual bleaching. The Irgarol treatment caused a rapid decrease in the slow decay DF component (10.1-60.0 s), while the fast decay DF component (0.1-10.0 s) decreased significantly after 6 d. The significant correlation between the latter values and the coral colour indicates that if the electron accumulation function of quinones Q_A and Q_B is compromised, corals will bleach. The present study will contribute to the understanding of the mechanism involved in bleaching of coral exposed to herbicides.