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Jiao Y, Lv W, Teng W, Li L, Lan H, Bai L, Li Z, Lian Y, Wang Z, Xin Z, Ren Y, Lin T. Peroxidase gene TaPrx109-B1 enhances wheat tolerance to water deficit via modulating stomatal density. PLANT, CELL & ENVIRONMENT 2024; 47:2954-2970. [PMID: 38629794 DOI: 10.1111/pce.14918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 03/23/2024] [Accepted: 04/07/2024] [Indexed: 07/12/2024]
Abstract
Increasing the tolerance of crops to water deficit is crucial for the improvement of crop production in water-restricted regions. Here, a wheat peroxidase gene (TaPrx109-B1) belonging to the class III peroxidase gene family was identified and its function in water deficit tolerance was revealed. We demonstrated that overexpression of TaPrx109-B1 reduced leaf H2O2 level and stomatal density, increased leaf relative water content, water use efficiency, and tolerance to water deficit. The expression of TaEPF1 and TaEPF2, two key negative regulators of stomatal development, were significantly upregulated in TaPrx109-B1 overexpression lines. Furthermore, exogenous H2O2 downregulated the expression of TaEPF1 and TaEPF2 and increased stomatal density, while exogenous application of diphenyleneiodonium chloride, a potent NADPH oxidase inhibitor that repressed the synthesis of H2O2, upregulated the expression of TaEPF1 and TaEPF2, decreased stomatal density, and enhanced wheat tolerance to water deficit. These findings suggest that TaPrx109-B1 influences leaf stomatal density by modulation of H2O2 level and the expression of TaEPF1 and TaEPF2. The results of the field trial showed that overexpressing TaPrx109-B1 increased grain number per spike, which reduced the yield loss caused by water deficiency. Therefore, TaPrx109-B1 has great potential in breeding wheat varieties with improved water deficit tolerance.
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Affiliation(s)
- Yanqing Jiao
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
- State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China
- Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Weizeng Lv
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
- State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China
- Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
- Department of Modern Agriculture, Lankao Vocational College of San Nong, Kaifeng, China
| | - Wan Teng
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
| | - Le Li
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
| | - Haibin Lan
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
| | - Lu Bai
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
| | - Zongzhen Li
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
| | - Yanhao Lian
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
| | - Zhiqiang Wang
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
- State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China
- Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Zeyu Xin
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
- State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China
- Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Yongzhe Ren
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
- State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China
- Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, China
| | - Tongbao Lin
- College of Agronomy, Henan Agricultural University, Zhengzhou, China
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Su S, Ji M, Chen J, Zhang M, Xu X, Cheng C. Genome-wide identification and expression analysis of protein arginine methyltransferase and JmjC domain-containing family in apple. FRONTIERS IN PLANT SCIENCE 2024; 15:1381753. [PMID: 38863543 PMCID: PMC11165092 DOI: 10.3389/fpls.2024.1381753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 05/13/2024] [Indexed: 06/13/2024]
Abstract
Histone methylation is an important type of histone modification that regulates gene expression in plants. In this study, we identified 14 arginine methylation-related genes (Protein Arginine Methyltransferase, MdPRMT) and 32 demethylation-related genes (JmjC Domain-Containing Family, MdJMJ) in apple. Furthermore, we investigated the phylogenetic relationship, chromosome distribution, gene structure, motif analysis, promoter sequence analysis, and expression patterns of MdPRMT and MdJMJ genes. Homology analysis showed a high degree of conservation and homology between PRMT and JMJ genes in Arabidopsis and apple. We identified the types of duplicated genes in the MdJMJ and MdPRMT gene families, found a large number of whole-genome duplicates (WGD) gene pairs and a small number of tandem duplicates (TD) pairs, transposed duplication (TRD) gene pairs as well as proximal duplicates (PD) pairs, and discussed the possible evolutionary pathways of the gene families from the perspective of duplicated genes. Homology analysis showed a high degree of conservation and homology between PRMT and JMJ genes in Arabidopsis and apple. In addition, the promoter regions of MdPRMT and MdJMJ contain numerous cis-acting elements involved in plant growth and development, hormone response, and stress responses. Based on the transcriptional profiles of MdPRMT and MdJMJ in different tissues and developmental stages, it was found that MdPRMT and MdJMJ may play multiple roles in apple growth and development, for example, MdJMJ21 may be involved in the regulation of apple endosperm formation. MdPRMT and MdJMJ exhibit different expression patterns in response to hormone signaling in apple, MdJMJ3, MdJMJ18, MdJMJ30, MdPRMT2, MdPRMT13, and MdPRMT14 may play roles in apple response to drought stress, while the expression of MdJMJ13, MdPRMT3, MdPRMT4, and MdPRMT6 is affected by cold stress. Our study provides a foundation for determining the functional roles of MdPRMT and MdJMJ genes in apple.
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Affiliation(s)
- Shenghui Su
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
| | - Min Ji
- Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao Agricultural University, Qingdao, China
| | - Jiaqi Chen
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Agricultural University, Qingdao, China
| | - Meidie Zhang
- Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao Agricultural University, Qingdao, China
| | - Xiaozhao Xu
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
- Qingdao Key Lab of Modern Agricultural Quality and Safety Engineering, Qingdao Agricultural University, Qingdao, China
- Academy of Dongying Efficient Agricultural Technology and Industry on Saline and Alkaline Land in Collaboration with Qingdao Agricultural University, Dongying, China
| | - Chenxia Cheng
- College of Horticulture, Qingdao Agricultural University, Qingdao, Shandong, China
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Poggi GM, Corneti S, Aloisi I. The Quest for Reliable Drought Stress Screening in Tetraploid Wheat ( Triticum turgidum spp.) Seedlings: Why MDA Quantification after Treatment with 10% PEG-6000 Falls Short. Life (Basel) 2024; 14:517. [PMID: 38672787 PMCID: PMC11051145 DOI: 10.3390/life14040517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 04/08/2024] [Accepted: 04/13/2024] [Indexed: 04/28/2024] Open
Abstract
Drought stress poses significant productivity challenges to wheat. Several studies suggest that lower malondialdehyde (MDA) content may be a promising trait to identify drought-tolerant wheat genotypes. However, the optimal polyethylene glycol (PEG-6000) concentration for screening seedlings for drought tolerance based on MDA quantification is not clear. The aim of this study was to verify whether a 10% (w/v) PEG-6000 concentration-induced water stress was reliable for discriminating between twenty-two drought-susceptible and drought-tolerant tetraploid wheat (Triticum turgidum spp. durum, turanicum, and carthlicum) accessions based on MDA quantification. To do so, its correlation with morpho-physiological traits, notoriously related to seedling drought tolerance, i.e., Seedling Vigour Index and Seedling Water Content, was evaluated. Results showed that MDA content was not a reliable biomarker for drought tolerance, as it did not correlate significantly with the aforementioned morpho-physiological traits, which showed, on the contrary, high positive correlation with each other. Combining our study with the cited literature, it clearly emerges that different wheat genotypes have different "water stress thresholds", highlighting that using a 10% PEG-6000 concentration for screening wheat seedlings for drought tolerance based on MDA quantification is not reliable. Given the conflicting results in the literature, this study provides important insights for selecting appropriate methods for evaluating wheat seedling drought tolerance.
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Affiliation(s)
| | | | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum—University of Bologna, 40126 Bologna, Italy; (G.M.P.); (S.C.)
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Maia MRG, Monteiro A, Valente IM, Sousa C, Miranda C, Castro C, Cortez PP, Cabrita ARJ, Trindade H, Fonseca AJM. Upcycling post-harvest biomass residues from native European Lupinus species: from straws and pod shells production to nutritive value and alkaloids content for ruminant animals. Front Nutr 2023; 10:1195015. [PMID: 37521412 PMCID: PMC10374839 DOI: 10.3389/fnut.2023.1195015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 06/23/2023] [Indexed: 08/01/2023] Open
Abstract
The production of Lupinus seeds for food and feed is increasing worldwide, which results in large amounts of post-harvest biomass residues, considered of low value and left in the field to be burned or incorporated in the soil. To valorize these agricultural wastes, this work aimed to assess their potential as an alternative feed for ruminants. Thus, the production yield, nutritive value, and alkaloid content of straws and pod shells from three native European Lupinus species, L. albus 'Estoril' (white), L. angustifolius 'Tango' (narrow-leafed), and L. luteus 'Cardiga' (yellow), cultivated in two locations, were evaluated. The dry matter (DM) yield of straws and pod shells were the highest for L. albus 'Estoril' (4.10 t ha-1) and the lowest for L. angustifolius 'Tango' (1.78 t ha-1), suggesting a poor adaptation of narrow-leafed lupin to the particularly dry and warm agronomic year. Despite species-specific differences, lupin biomass residues presented higher crude protein (53.0-68.9 g kg-1 DM) and lignin (103-111 g kg-1 DM) content than cereal straws usually used in ruminant feeding, thus resulting in higher metabolizable energy (6.43-6.58 MJ kg-1 DM) content. In vitro digestibility was similar among lupin species (47.7-50.6%) and higher in pod shells (53.7%) than in straws (44.6%). Lupinus albus 'Estoril' and L. luteus 'Cardiga' presented considerable amounts of alkaloids in straws (23.9 and 119 mg kg-1 DM) and pod shells (20.5 and 298 mg kg-1 DM), while no alkaloids were detected in L. angustifolius 'Tango' biomass residues. Considering the combined production of straw and pod shells per lupin species, it is anticipated that lupin biomass residues produced per ha can fulfill 85% of the energy and nearly 50% of protein requirements of a flock of 4 to 9 dry and mid-pregnancy sheep with 50 kg body weight for one year. No negative effects on small (ovine) and large (bovine) ruminant species due to alkaloids are expected, even if biomass residues are consumed at up to 85% DM intake. The large production yield along with its nutritive value unveils the potential of lupin biomass residues valorization as alternative fodder for ruminants, promoting sustainability under a circular economy approach.
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Affiliation(s)
- Margarida R. G. Maia
- REQUIMTE, LAQV, ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
| | - André Monteiro
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - Inês M. Valente
- REQUIMTE, LAQV, ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
- REQUIMTE, LAQV, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Porto, Portugal
| | - Carla Sousa
- REQUIMTE, LAQV, ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
| | - Carla Miranda
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - Carlos Castro
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - Paulo P. Cortez
- ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
| | - Ana R. J. Cabrita
- REQUIMTE, LAQV, ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
| | - Henrique Trindade
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences (CITAB), University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
| | - António J. M. Fonseca
- REQUIMTE, LAQV, ICBAS, School of Medicine and Biomedical Sciences, University of Porto, Porto, Portugal
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Liu E, Xu L, Luo Z, Li Z, Zhou G, Gao H, Fang F, Tang J, Zhao Y, Zhou Z, Jin P. Transcriptomic analysis reveals mechanisms for the different drought tolerance of sweet potatoes. FRONTIERS IN PLANT SCIENCE 2023; 14:1136709. [PMID: 37008495 PMCID: PMC10060965 DOI: 10.3389/fpls.2023.1136709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 02/13/2023] [Indexed: 06/19/2023]
Abstract
Drought is a common environmental stress with great negative impacts on plant growth, development and geographical distribution as well as agriculture and food production. Sweet potato is characterized by starchy, fresh and pigmented tuber, and is regarded as the seventh most important food crop. However, there has been no comprehensive study of the drought tolerance mechanism of different sweet potato cultivars to date. Here, we studied the mechanism for drought response of seven sweet potato drought-tolerant cultivars using the drought coefficients, physiological indicators and transcriptome sequencing. The seven sweet potato cultivars were classified into four groups of drought tolerance performance. A large number of new genes and transcripts were identified, with an average of about 8000 new genes per sample. Alternative splicing events in sweet potato, which were dominated by first exon and last exon alternative splicing, were not conserved among different cultivars and not significantly affected by drought stress. Furthermore, different drought-tolerance mechanisms were revealed through differentially expressed gene analysis and functional annotation. Two drought-sensitive cultivars, Shangshu-9 and Xushu-22, mainly resisted drought stress by up-regulating plant signal transduction. The other drought-sensitive cultivar Jishu-26 responded to drought stress by down-regulating isoquinoline alkaloid biosynthesis and nitrogen/carbohydrate metabolism. In addition, the drought-tolerant cultivar Chaoshu-1 and drought-preferred cultivar Z15-1 only shared 9% of differentially expressed genes, as well as many opposite metabolic pathways in response to drought. They mainly regulated flavonoid and carbohydrate biosynthesis/metabolism in response to drought, while Z15-1 increased photosynthesis and carbon fixation capacity. The other drought-tolerant cultivar Xushu-18 responded to drought stress by regulating the isoquinoline alkaloid biosynthesis and nitrogen/carbohydrate metabolism. The extremely drought-tolerant cultivar Xuzi-8 was almost unaffected by drought stress and responded to drought environment only by regulating the cell wall. These findings provide important information for the selection of sweet potatoes for specific purposes.
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Affiliation(s)
- Enliang Liu
- Grain Crops Institute, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Linli Xu
- Comprehensive Proving Ground, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Zhengqian Luo
- Comprehensive Proving Ground, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Zhiqiang Li
- Grain Crops Institute, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Guohui Zhou
- Adsen Biotechnology Co., Ltd., Urumqi, China
| | - Haifeng Gao
- Institute of Plant Protection, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Furong Fang
- Grain Crops Institute, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Jun Tang
- Xuzhou Institute of Agricultural Sciences in Xuhuai District, Xuzhou, China
| | - Yue Zhao
- Grain Crops Institute, Xinjiang Academy of Agricultural Sciences, Urumqi, China
| | - Zhilin Zhou
- Xuzhou Institute of Agricultural Sciences in Xuhuai District, Xuzhou, China
| | - Ping Jin
- Comprehensive Proving Ground, Xinjiang Academy of Agricultural Sciences, Urumqi, China
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Cheng C, An L, Li F, Ahmad W, Aslam M, Ul Haq MZ, Yan Y, Ahmad RM. Wide-Range Portrayal of AP2/ERF Transcription Factor Family in Maize ( Zea mays L.) Development and Stress Responses. Genes (Basel) 2023; 14:194. [PMID: 36672935 PMCID: PMC9859492 DOI: 10.3390/genes14010194] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 01/03/2023] [Accepted: 01/06/2023] [Indexed: 01/13/2023] Open
Abstract
The APETALA2/Ethylene-Responsive Transcriptional Factors containing conservative AP2/ERF domains constituted a plant-specific transcription factor (TF) superfamily, called AP2/ERF. The configuration of the AP2/ERF superfamily in maize has remained unresolved. In this study, we identified the 229 AP2/ERF genes in the latest (B73 RefGen_v5) maize reference genome. Phylogenetic classification of the ZmAP2/ERF family members categorized it into five clades, including 27 AP2 (APETALA2), 5 RAV (Related to ABI3/VP), 89 DREB (dehydration responsive element binding), 105 ERF (ethylene responsive factors), and a soloist. The duplication events of the paralogous genes occurred from 1.724-25.855 MYA, a key route to maize evolution. Structural analysis reveals that they have more introns and few exons. The results showed that 32 ZmAP2/ERFs regulate biotic stresses, and 24 ZmAP2/ERFs are involved in responses towards abiotic stresses. Additionally, the expression analysis showed that DREB family members are involved in plant sex determination. The real-time quantitative expression profiling of ZmAP2/ERFs in the leaves of the maize inbred line B73 under ABA, JA, salt, drought, heat, and wounding stress revealed their specific expression patterns. Conclusively, this study unveiled the evolutionary pathway of ZmAP2/ERFs and its essential role in stress and developmental processes. The generated information will be useful for stress resilience maize breeding programs.
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Affiliation(s)
- Cheng Cheng
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Likun An
- College of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, China
| | - Fangzhe Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Wahaj Ahmad
- Institute of Soil and Environmental Sciences, COMSATS University Islamabad, Abbottabad 22020, Pakistan
| | - Muhammad Aslam
- Department of Plant Breeding and Genetics, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan
| | - Muhammad Zia Ul Haq
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan
| | - Yuanxin Yan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Ramala Masood Ahmad
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
- Department of Plant Breeding and Genetics, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan
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7
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Poggi GM, Corneti S, Aloisi I, Ventura F. Environment-oriented selection criteria to overcome controversies in breeding for drought resistance in wheat. JOURNAL OF PLANT PHYSIOLOGY 2023; 280:153895. [PMID: 36529076 DOI: 10.1016/j.jplph.2022.153895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 11/17/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Wheat is one of the most important cereal crops, representing a fundamental source of calories and protein for the global human population. Drought stress (DS) is a widespread phenomenon, already affecting large wheat-growing areas worldwide, and a major threat for cereal productivity, resulting in consistent losses in average grain yield (GY). Climate change is projected to exacerbate DS incidence and severity by increasing temperatures and changing rainfall patterns. Estimating that wheat production has to substantially increase to guarantee food security to a demographically expanding human population, the need for breeding programs focused on improving wheat drought resistance is manifest. Drought occurrence, in terms of time of appearance, duration, frequency, and severity, along the plant's life cycle varies significantly among different environments and different agricultural years, making it difficult to identify reliable phenological, morphological, and functional traits to be used as effective breeding tools. The situation is further complicated by the presence of confounding factors, e.g., other concomitant abiotic stresses, in an open-field context. Consequently, the relationship between morpho-functional traits and GY under water deficit is often contradictory; moreover, controversies have emerged not only on which traits are to be preferred, but also on how one specific trait should be desired. In this review, we attempt to identify the possible causes of these disputes and propose the most suitable selection criteria in different target environments and, thus, the best trait combinations for breeders in different drought contexts. In fact, an environment-oriented approach could be a valuable solution to overcome controversies in identifying the proper selection criteria for improving wheat drought resistance.
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Affiliation(s)
- Giovanni Maria Poggi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy; Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Simona Corneti
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy.
| | - Francesca Ventura
- Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
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Asati R, Tripathi MK, Tiwari S, Yadav RK, Tripathi N. Molecular Breeding and Drought Tolerance in Chickpea. LIFE (BASEL, SWITZERLAND) 2022; 12:life12111846. [PMID: 36430981 PMCID: PMC9698494 DOI: 10.3390/life12111846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 11/05/2022] [Accepted: 11/07/2022] [Indexed: 11/16/2022]
Abstract
Cicer arietinum L. is the third greatest widely planted imperative pulse crop worldwide, and it belongs to the Leguminosae family. Drought is the utmost common abiotic factor on plants, distressing their water status and limiting their growth and development. Chickpea genotypes have the natural ability to fight drought stress using certain strategies viz., escape, avoidance and tolerance. Assorted breeding methods, including hybridization, mutation, and marker-aided breeding, genome sequencing along with omics approaches, could be used to improve the chickpea germplasm lines(s) against drought stress. Root features, for instance depth and root biomass, have been recognized as the greatest beneficial morphological factors for managing terminal drought tolerance in the chickpea. Marker-aided selection, for example, is a genomics-assisted breeding (GAB) strategy that can considerably increase crop breeding accuracy and competence. These breeding technologies, notably marker-assisted breeding, omics, and plant physiology knowledge, underlined the importance of chickpea breeding and can be used in future crop improvement programmes to generate drought-tolerant cultivars(s).
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Affiliation(s)
- Ruchi Asati
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Manoj Kumar Tripathi
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Department of Plant Molecular Biology & Biotechnology, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Correspondence: (M.K.T.); (N.T.)
| | - Sushma Tiwari
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Department of Plant Molecular Biology & Biotechnology, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Rakesh Kumar Yadav
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Niraj Tripathi
- Directorate of Research Services, Jawaharlal Nehru Agricultural University, Jabalpur 482004, India
- Correspondence: (M.K.T.); (N.T.)
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9
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Fletcher LR, Scoffoni C, Farrell C, Buckley TN, Pellegrini M, Sack L. Testing the association of relative growth rate and adaptation to climate across natural ecotypes of Arabidopsis. THE NEW PHYTOLOGIST 2022; 236:413-432. [PMID: 35811421 DOI: 10.1111/nph.18369] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 06/28/2022] [Indexed: 06/15/2023]
Abstract
Ecophysiologists have reported a range of relationships, including intrinsic trade-offs across and within species between plant relative growth rate in high resource conditions (RGR) vs adaptation to tolerate cold or arid climates, arising from trait-based mechanisms. Few studies have considered ecotypes within a species, in which the lack of a trade-off would contribute to a wide species range and resilience to climate change. For 15 ecotypes of Arabidopsis thaliana in a common garden we tested for associations between RGR vs adaptation to cold or dry native climates and assessed hypotheses for its mediation by 15 functional traits. Ecotypes native to warmer, drier climates had higher leaf density, leaf mass per area, root mass fraction, nitrogen per leaf area and carbon isotope ratio, and lower osmotic potential at full turgor. Relative growth rate was statistically independent of the climate of the ecotype native range and of individual functional traits. The decoupling of RGR and cold or drought adaptation in Arabidopsis is consistent with multiple stress resistance and avoidance mechanisms for ecotypic climate adaptation and would contribute to the species' wide geographic range and resilience as the climate changes.
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Affiliation(s)
- Leila R Fletcher
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA
- School of the Environment, Yale University, New Haven, CT, 06511, USA
| | - Christine Scoffoni
- Department of Biological Sciences, California State University, Los Angeles, CA, 90032, USA
| | - Colin Farrell
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA
| | - Thomas N Buckley
- Department of Plant Sciences, College of Agricultural and Environmental Sciences, University of California, Davis, CA, 95616, USA
| | - Matteo Pellegrini
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, 90095, USA
| | - Lawren Sack
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA
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Kushwah A, Bhatia D, Barmukh R, Singh I, Singh G, Bindra S, Vij S, Chellapilla B, Pratap A, Roorkiwal M, Kumar S, Varshney RK, Singh S. Genetic mapping of QTLs for drought tolerance in chickpea ( Cicer arietinum L.). Front Genet 2022; 13:953898. [PMID: 36061197 PMCID: PMC9437436 DOI: 10.3389/fgene.2022.953898] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 07/05/2022] [Indexed: 01/24/2023] Open
Abstract
Chickpea yield is severely affected by drought stress, which is a complex quantitative trait regulated by multiple small-effect genes. Identifying genomic regions associated with drought tolerance component traits may increase our understanding of drought tolerance mechanisms and assist in the development of drought-tolerant varieties. Here, a total of 187 F8 recombinant inbred lines (RILs) developed from an interspecific cross between drought-tolerant genotype GPF 2 (Cicer arietinum) and drought-sensitive accession ILWC 292 (C. reticulatum) were evaluated to identify quantitative trait loci (QTLs) associated with drought tolerance component traits. A total of 21 traits, including 12 morpho-physiological traits and nine root-related traits, were studied under rainfed and irrigated conditions. Composite interval mapping identified 31 QTLs at Ludhiana and 23 QTLs at Faridkot locations for morphological and physiological traits, and seven QTLs were identified for root-related traits. QTL analysis identified eight consensus QTLs for six traits and five QTL clusters containing QTLs for multiple traits on linkage groups CaLG04 and CaLG06. The identified major QTLs and genomic regions associated with drought tolerance component traits can be introgressed into elite cultivars using genomics-assisted breeding to enhance drought tolerance in chickpea.
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Affiliation(s)
- Ashutosh Kushwah
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Dharminder Bhatia
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Rutwik Barmukh
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
| | - Inderjit Singh
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Gurpreet Singh
- Regional Research Station, Punjab Agricultural University, Faridkot, India
| | - Shayla Bindra
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Suruchi Vij
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | | | - Aditya Pratap
- Crop Improvement Division, ICAR- Indian Institute of Pulses Research, Kanpur, India
| | - Manish Roorkiwal
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
| | - Shiv Kumar
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat Office, Rabat, Morocco
| | - Rajeev K. Varshney
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
- Murdoch’s Centre for Crop and Food Innovation, State Agricultural Biotechnology Centre, Food Futures Institute, Murdoch University, Murdoch, WA, Australia
| | - Sarvjeet Singh
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
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Chapman EA, Thomsen HC, Tulloch S, Correia PMP, Luo G, Najafi J, DeHaan LR, Crews TE, Olsson L, Lundquist PO, Westerbergh A, Pedas PR, Knudsen S, Palmgren M. Perennials as Future Grain Crops: Opportunities and Challenges. FRONTIERS IN PLANT SCIENCE 2022; 13:898769. [PMID: 35968139 PMCID: PMC9372509 DOI: 10.3389/fpls.2022.898769] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
Perennial grain crops could make a valuable addition to sustainable agriculture, potentially even as an alternative to their annual counterparts. The ability of perennials to grow year after year significantly reduces the number of agricultural inputs required, in terms of both planting and weed control, while reduced tillage improves soil health and on-farm biodiversity. Presently, perennial grain crops are not grown at large scale, mainly due to their early stages of domestication and current low yields. Narrowing the yield gap between perennial and annual grain crops will depend on characterizing differences in their life cycles, resource allocation, and reproductive strategies and understanding the trade-offs between annualism, perennialism, and yield. The genetic and biochemical pathways controlling plant growth, physiology, and senescence should be analyzed in perennial crop plants. This information could then be used to facilitate tailored genetic improvement of selected perennial grain crops to improve agronomic traits and enhance yield, while maintaining the benefits associated with perennialism.
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Affiliation(s)
| | | | - Sophia Tulloch
- Department of Raw Materials, Carlsberg Research Laboratory, Copenhagen, Denmark
| | - Pedro M. P. Correia
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Guangbin Luo
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Javad Najafi
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | | | | | - Lennart Olsson
- Lund University Centre for Sustainability Studies, Lund, Sweden
| | - Per-Olof Lundquist
- Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology in Uppsala, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Anna Westerbergh
- Department of Plant Biology, Uppsala BioCenter, Linnean Centre for Plant Biology in Uppsala, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Pai Rosager Pedas
- Department of Raw Materials, Carlsberg Research Laboratory, Copenhagen, Denmark
| | - Søren Knudsen
- Department of Raw Materials, Carlsberg Research Laboratory, Copenhagen, Denmark
| | - Michael Palmgren
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
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12
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Renzi JP, Coyne CJ, Berger J, von Wettberg E, Nelson M, Ureta S, Hernández F, Smýkal P, Brus J. How Could the Use of Crop Wild Relatives in Breeding Increase the Adaptation of Crops to Marginal Environments? FRONTIERS IN PLANT SCIENCE 2022; 13:886162. [PMID: 35783966 PMCID: PMC9243378 DOI: 10.3389/fpls.2022.886162] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 05/11/2022] [Indexed: 06/01/2023]
Abstract
Alongside the use of fertilizer and chemical control of weeds, pests, and diseases modern breeding has been very successful in generating cultivars that have increased agricultural production several fold in favorable environments. These typically homogeneous cultivars (either homozygous inbreds or hybrids derived from inbred parents) are bred under optimal field conditions and perform well when there is sufficient water and nutrients. However, such optimal conditions are rare globally; indeed, a large proportion of arable land could be considered marginal for agricultural production. Marginal agricultural land typically has poor fertility and/or shallow soil depth, is subject to soil erosion, and often occurs in semi-arid or saline environments. Moreover, these marginal environments are expected to expand with ongoing climate change and progressive degradation of soil and water resources globally. Crop wild relatives (CWRs), most often used in breeding as sources of biotic resistance, often also possess traits adapting them to marginal environments. Wild progenitors have been selected over the course of their evolutionary history to maintain their fitness under a diverse range of stresses. Conversely, modern breeding for broad adaptation has reduced genetic diversity and increased genetic vulnerability to biotic and abiotic challenges. There is potential to exploit genetic heterogeneity, as opposed to genetic uniformity, in breeding for the utilization of marginal lands. This review discusses the adaptive traits that could improve the performance of cultivars in marginal environments and breeding strategies to deploy them.
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Affiliation(s)
- Juan Pablo Renzi
- Instituto Nacional de Tecnología Agropecuaria, Hilario Ascasubi, Argentina
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | | | - Jens Berger
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Wembley, WA, Australia
| | - Eric von Wettberg
- Department of Plant and Soil Science, Gund Institute for Environment, University of Vermont, Burlington, VT, United States
- Department of Applied Mathematics, Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia
| | - Matthew Nelson
- Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Wembley, WA, Australia
- The UWA Institute of Agriculture, University of Western Australia, Crawley, WA, Australia
| | - Soledad Ureta
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | - Fernando Hernández
- CERZOS, Departamento de Agronomía, Universidad Nacional del Sur (CONICET), Bahía Blanca, Argentina
| | - Petr Smýkal
- Department of Botany, Faculty of Science, Palacký University, Olomouc, Czechia
| | - Jan Brus
- Department of Geoinformatics, Faculty of Sciences, Palacký University, Olomouc, Czechia
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13
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Advances in Ecohydrology for Water Resources Optimization in Arid and Semi-Arid Areas. WATER 2022. [DOI: 10.3390/w14121830] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Conserving water resources is a current challenge that will become increasingly urgent in future due to climate change. The arid and semi-arid areas of the globe are expected to be particularly affected by changes in water availability. Consequently, advances in ecohydrology sciences, i.e., the interplay between ecological and hydrological processes, are necessary to enhance the understanding of the critical zone, optimize water resources’ usage in arid and semi-arid areas, and mitigate climate change. This Special Issue (SI) collected 10 original contributions on sustainable land management and the optimization of water resources in fragile environments that are at elevated risk due to climate change. In this context, the topics mainly concern transpiration, evapotranspiration, groundwater recharge, deep percolation, and related issues. The collection of manuscripts presented in this SI represents knowledge of ecohydrology. It is expected that ecohydrology will have increasing applications in the future. Therefore, it is realistic to assume that efforts to increase environmental sustainability and socio-economic development, with water as a central theme, will have a greater chance of success.
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14
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Poria V, Dębiec-Andrzejewska K, Fiodor A, Lyzohub M, Ajijah N, Singh S, Pranaw K. Plant Growth-Promoting Bacteria (PGPB) integrated phytotechnology: A sustainable approach for remediation of marginal lands. FRONTIERS IN PLANT SCIENCE 2022; 13:999866. [PMID: 36340355 PMCID: PMC9634634 DOI: 10.3389/fpls.2022.999866] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/04/2022] [Indexed: 05/13/2023]
Abstract
Land that has little to no utility for agriculture or industry is considered marginal land. This kind of terrain is frequently found on the edge of deserts or other arid regions. The amount of land that can be used for agriculture continues to be constrained by increasing desertification, which is being caused by climate change and the deterioration of agriculturally marginal areas. Plants and associated microorganisms are used to remediate and enhance the soil quality of marginal land. They represent a low-cost and usually long-term solution for restoring soil fertility. Among various phytoremediation processes (viz., phytodegradation, phytoextraction, phytostabilization, phytovolatilization, phytofiltration, phytostimulation, and phytodesalination), the employment of a specific mechanism is determined by the state of the soil, the presence and concentration of contaminants, and the plant species involved. This review focuses on the key economically important plants used for phytoremediation, as well as the challenges to plant growth and phytoremediation capability with emphasis on the advantages and limits of plant growth in marginal land soil. Plant growth-promoting bacteria (PGPB) boost plant development and promote soil bioremediation by secreting a variety of metabolites and hormones, through nitrogen fixation, and by increasing other nutrients' bioavailability through mineral solubilization. This review also emphasizes the role of PGPB under different abiotic stresses, including heavy-metal-contaminated land, high salinity environments, and organic contaminants. In our opinion, the improved soil fertility of marginal lands using PGPB with economically significant plants (e.g., Miscanthus) in dual precession technology will result in the reclamation of general agriculture as well as the restoration of native vegetation.
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Affiliation(s)
- Vikram Poria
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
| | - Klaudia Dębiec-Andrzejewska
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Angelika Fiodor
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Marharyta Lyzohub
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Nur Ajijah
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Surender Singh
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
| | - Kumar Pranaw
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
- *Correspondence: Kumar Pranaw, ;
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15
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Cordero I, Jiménez MD, Delgado JA, Balaguer L, Pueyo JJ, Rincón A. Local adaptation optimizes photoprotection strategies in a Neotropical legume tree under drought stress. TREE PHYSIOLOGY 2021; 41:1641-1657. [PMID: 33611539 DOI: 10.1093/treephys/tpab034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 11/13/2020] [Accepted: 02/16/2021] [Indexed: 06/12/2023]
Abstract
Photoprotection is a plant functional mechanism to prevent photooxidative damage by excess light. This is most important when carbon assimilation is limited by drought, and as such, it entails a trade-off between carbon assimilation vs stress avoidance. The ecological adaptation of plants to local water availability can lead to different photoprotective strategies. To test this, we used different provenances of Caesalpinia spinosa (Mol.) Kuntze (commonly known as 'tara') along a precipitation gradient. Tara is a Neotropical legume tree with high ecological and commercial value, found in dry tropical forests, which are increasingly threatened by climate change. Morphological and physiological responses of tara provenances were analysed under three different treatments of drought and leaflet immobilization, i.e., light stress, in a common garden greenhouse experiment. Tara quickly responded to drought by reducing stomatal conductance, evapotranspiration, photochemical efficiency, carbon assimilation and growth, while increasing structural and chemical photoprotection (leaflet angle and pigments for thermal dissipation). Leaflet closure was an efficient photoprotection strategy with overall physiological benefits for seedlings as it diminished the evaporative demand and avoided photodamage, but also entailed costs by reducing net carbon assimilation opportunities. These responses depended on seed origin, with seedlings from the most xeric locations showing the highest dehydration tolerance, suggesting local adaptation and highlighting the value of different strategies under distinct environments. This plasticity in its response to environmental stress allows tara to thrive in locations with contrasting water availability. Our findings increase the understanding of the factors controlling the functional ecology of tara in response to drought, which can be leveraged to improve forecasts of changes in its distribution range, and for planning restoration projects with this keystone tree species.
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Affiliation(s)
- Irene Cordero
- Department of Soil, Plant, and Environmental Quality, Institute of Agricultural Sciences, Spanish National Research Council (ICA-CSIC), Serrano 115-bis, 28006 Madrid, Spain
- Department of Plant Biology I, Universidad Complutense de Madrid, José Antonio Nováis 10, 28040 Madrid, Spain
- Department of Earth and Environmental Sciences, The University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - María Dolores Jiménez
- Department of Biodiversity, Ecology and Evolution, Universidad Complutense de Madrid, José Antonio Nováis 10, 28040 Madrid, Spain
| | - Juan Antonio Delgado
- Department of Biodiversity, Ecology and Evolution, Universidad Complutense de Madrid, José Antonio Nováis 10, 28040 Madrid, Spain
| | - Luis Balaguer
- Department of Plant Biology I, Universidad Complutense de Madrid, José Antonio Nováis 10, 28040 Madrid, Spain
| | - José J Pueyo
- Department of Soil, Plant, and Environmental Quality, Institute of Agricultural Sciences, Spanish National Research Council (ICA-CSIC), Serrano 115-bis, 28006 Madrid, Spain
| | - Ana Rincón
- Department of Soil, Plant, and Environmental Quality, Institute of Agricultural Sciences, Spanish National Research Council (ICA-CSIC), Serrano 115-bis, 28006 Madrid, Spain
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16
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Bano H, Athar HUR, Zafar ZU, Ogbaga CC, Ashraf M. Peroxidase activity and operation of photo-protective component of NPQ play key roles in drought tolerance of mung bean [Vigna radiata (L.) Wilcziek]. PHYSIOLOGIA PLANTARUM 2021; 172:603-614. [PMID: 33491210 DOI: 10.1111/ppl.13337] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 12/12/2020] [Accepted: 01/15/2021] [Indexed: 05/29/2023]
Abstract
Developing drought-tolerant cultivars is mainly restricted due to poor knowledge of the mechanism behind drought tolerance. In the present work, available germplasm of Vigna radiata (mung bean) was screened for drought tolerance using multiple agronomic and physiological parameters and used to selected one drought-tolerant (NM-13-1) and one drought-sensitive (NM-54) cultivar for further studies. Plant water status and PSII activity were found to be potential physiological discriminating traits. Changes in PSII and PSI activity, accumulation of proline, oxidative damage, and antioxidants were further assessed in selected drought-sensitive and drought-tolerant cultivars. Drought stress reduced PSII efficiency and electron transport in both mung bean cultivars. Drought increased NPQ and Y(NPQ), a greater increase in NPQ and Y(NPQ) was found in the drought-tolerant cv NM-13-1, indicating that the drought-tolerant cultivar managed over-excitation of PSII by safe heat dissipation via photo-protective component of NPQ. A decrease in PSI efficiency with an increase in donor end limitation of PSI in both mung bean cultivars further confirmed that the electron transport through PSII became down-regulated. However, the drought-sensitive cv. NM-54 had poor ability to manage over-excitation of PSII through buildup of Y(NPQ) thereby causing greater oxidative stress. Mung bean cultivars counteracted oxidative stress by accumulation of proline and increasing POD activities. Drought-tolerant cv. NM-13-1 had higher proline accumulation and antioxidant potential than in the drought-sensitive cultivar. Overall, drought tolerance in the mung bean cultivars can be related to plant water status, PSII activity, Y(NPQ), and POD activity, which can be effectively used for selecting mung bean cultivars for drought tolerance.
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Affiliation(s)
- Hussan Bano
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
- Department of Botany, The Women University Multan, Multan, Pakistan
| | - Habib-Ur-Rehman Athar
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Zafar Ullah Zafar
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Chukwuma C Ogbaga
- Department of Biological Sciences, Nile University of Nigeria, Abuja, Nigeria
| | - Muhammad Ashraf
- Department of Botany, University of Agriculture, Faisalabad, Pakistan
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17
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Hendel E, Bacher H, Oksenberg A, Walia H, Schwartz N, Peleg Z. Deciphering the genetic basis of wheat seminal root anatomy uncovers ancestral axial conductance alleles. PLANT, CELL & ENVIRONMENT 2021; 44:1921-1934. [PMID: 33629405 DOI: 10.1111/pce.14035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 02/19/2021] [Accepted: 02/21/2021] [Indexed: 05/24/2023]
Abstract
Root axial conductance, which describes the ability of water to move through the xylem, contributes to the rate of water uptake from the soil throughout the whole plant lifecycle. Under the rainfed wheat agro-system, grain-filling is typically occurring during declining water availability (i.e., terminal drought). Therefore, preserving soil water moisture during grain filling could serve as a key adaptive trait. We hypothesized that lower wheat root axial conductance can promote higher yields under terminal drought. A segregating population derived from a cross between durum wheat and its direct progenitor wild emmer wheat was used to underpin the genetic basis of seminal root architectural and functional traits. We detected 75 QTL associated with seminal roots morphological, anatomical and physiological traits, with several hotspots harbouring co-localized QTL. We further validated the axial conductance and central metaxylem QTL using wild introgression lines. Field-based characterization of genotypes with contrasting axial conductance suggested the contribution of low axial conductance as a mechanism for water conservation during grain filling and consequent increase in grain size and yield. Our findings underscore the potential of harnessing wild alleles to reshape the wheat root system architecture and associated hydraulic properties for greater adaptability under changing climate.
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Affiliation(s)
- Elisha Hendel
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
- The Institute of Environmental Sciences, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Harel Bacher
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Adi Oksenberg
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Harkamal Walia
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Nimrod Schwartz
- The Institute of Environmental Sciences, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Zvi Peleg
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
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18
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Keep T, Sampoux J, Barre P, Blanco‐Pastor J, Dehmer KJ, Durand J, Hegarty M, Ledauphin T, Muylle H, Roldán‐Ruiz I, Ruttink T, Surault F, Willner E, Volaire F. To grow or survive: Which are the strategies of a perennial grass to face severe seasonal stress? Funct Ecol 2021. [DOI: 10.1111/1365-2435.13770] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | | | - Klaus J. Dehmer
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Malchow/Poel Germany
| | | | | | | | - Hilde Muylle
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) ‐ Plant Sciences Unit Melle Belgium
| | - Isabel Roldán‐Ruiz
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) ‐ Plant Sciences Unit Melle Belgium
| | - Tom Ruttink
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) ‐ Plant Sciences Unit Melle Belgium
| | | | - Evelin Willner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Malchow/Poel Germany
| | - Florence Volaire
- CEFEUniv MontpellierCNRSEPHE, IRDUniversité Paul Valéry Montpellier 3INRAE Montpellier France
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19
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Mihaljević I, Viljevac Vuletić M, Šimić D, Tomaš V, Horvat D, Josipović M, Zdunić Z, Dugalić K, Vuković D. Comparative Study of Drought Stress Effects on Traditional and Modern Apple Cultivars. PLANTS (BASEL, SWITZERLAND) 2021; 10:561. [PMID: 33809688 PMCID: PMC8002316 DOI: 10.3390/plants10030561] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 03/11/2021] [Accepted: 03/12/2021] [Indexed: 05/21/2023]
Abstract
Genotype-dependent responses of apples to drought stress were evaluated between commercial and traditional apple cultivars. The results indicate different mechanisms of tolerance to investigated drought stress conditions. Chlorophyll fluorescence induction (OJIP) parameters, chlorophyll and carotenoid content, malondialdehyde (MDA), hydrogen peroxide (H2O2), proline, phenols and leaf water content (WC) were measured. The traditional cultivar "Crvenka" confirmed the best tolerance to a drought stress condition, presenting higher photosynthetic efficiency, higher leaf water content, higher levels of chlorophyll content and lower lipid peroxidation with greater membrane stability. The commercial cultivar "Golden Delicious Reinders" showed decreased water content in leaves, increased lipid peroxidation levels and photoinhibition. Considering all results, the commercial cultivar "Golden Delicious Reinders" was adversely affected by drought, while traditional cultivars exhibited better tolerance to drought stress.
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Affiliation(s)
- Ines Mihaljević
- Agricultural Institute Osijek, Južno predgrađe 17, HR-31000 Osijek, Croatia; (M.V.V.); (D.Š.); (V.T.); (D.H.); (M.J.); (Z.Z.); (K.D.); (D.V.)
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20
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Bharadwaj C, Tripathi S, Soren KR, Thudi M, Singh RK, Sheoran S, Roorkiwal M, Patil BS, Chitikineni A, Palakurthi R, Vemula A, Rathore A, Kumar Y, Chaturvedi SK, Mondal B, Shanmugavadivel PS, Srivastava AK, Dixit GP, Singh NP, Varshney RK. Introgression of "QTL-hotspot" region enhances drought tolerance and grain yield in three elite chickpea cultivars. THE PLANT GENOME 2021; 14:e20076. [PMID: 33480153 DOI: 10.1002/tpg2.20076] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Accepted: 11/10/2020] [Indexed: 05/27/2023]
Abstract
With an aim of enhancing drought tolerance using a marker-assisted backcrossing (MABC) approach, we introgressed the "QTL-hotspot" region from ICC 4958 accession that harbors quantitative trait loci (QTLs) for several drought-tolerance related traits into three elite Indian chickpea (Cicer arietinum L.) cultivars: Pusa 372, Pusa 362, and DCP 92-3. Of eight simple sequence repeat (SSR) markers in the QTL-hotspot region, two to three polymorphic markers were used for foreground selection with respective cross-combinations. A total of 47, 53, and 46 SSRs were used for background selection in case of introgression lines (ILs) developed in genetic backgrounds of Pusa 372, Pusa 362, and DCP 92-3, respectively. In total, 61 ILs (20 BC3 F3 in Pusa 372; 20 BC2 F3 in Pusa 362, and 21 BC3 F3 in DCP 92-3), with >90% recurrent parent genome recovery were developed. Six improved lines in different genetic backgrounds (e.g. BGM 10216 in Pusa 372; BG 3097 and BG 4005 in Pusa 362; IPC(L4-14), IPC(L4-16), and IPC(L19-1) in DCP 92-3) showed better performance than their respective recurrent parents. BGM 10216, with 16% yield gain over Pusa 372, has been released as Pusa Chickpea 10216 by the Central Sub-Committees on Crop Standards, Notification and Release of Varieties of Agricultural Crops, Ministry of Agriculture and Farmers Welfare, Government of India, for commercial cultivation in India. In summary, this study reports introgression of the QTL-hotspot for enhancing yield under rainfed conditions, development of several introgression lines, and release of Pusa Chickpea 10216 developed through molecular breeding in India.
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Affiliation(s)
- Chellapilla Bharadwaj
- Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), New Delhi, Delhi, 110012, India
| | - Shailesh Tripathi
- Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), New Delhi, Delhi, 110012, India
| | - Khela R Soren
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
| | - Mahendar Thudi
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | - Rajesh K Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), New Delhi, Delhi, 110012, India
| | - Seema Sheoran
- Division of Genetics, ICAR-Indian Agricultural Research Institute (ICAR-IARI), New Delhi, Delhi, 110012, India
- Present address: ICAR-Indian Institute of Maize Research (ICAR-IIMR), PAU campus, Ludhiana, Punjab, 141004, India
| | - Manish Roorkiwal
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | | | - Annapurna Chitikineni
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | - Ramesh Palakurthi
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | - Anilkumar Vemula
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | - Abhishek Rathore
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
| | - Yogesh Kumar
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
| | - Sushil K Chaturvedi
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
- Present address: Rani Lakshmi Bai Central Agricultural University, Jhansi, Uttar Pradesh, 284003, India
| | - Biswajit Mondal
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
| | | | - Avinash K Srivastava
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
| | - Girish P Dixit
- ICAR-All India Coordinated Research Project on Chickpea (AICRP-Chickpea), ICAR-IIPR, Kanpur, Uttar Pradesh, India
| | - Narendra P Singh
- ICAR-Indian Institute of Pulses Research (ICAR-IIPR), Kanpur, Uttar Pradesh, 208024, India
| | - Rajeev K Varshney
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana, 502324, India
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21
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Berger J, Pushpavalli R, Ludwig C, Parsons S, Basdemir F, Whisson K. Wild and Domestic Differences in Plant Development and Responses to Water Deficit in Cicer. Front Genet 2020; 11:607819. [PMID: 33343641 PMCID: PMC7746823 DOI: 10.3389/fgene.2020.607819] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 11/10/2020] [Indexed: 11/25/2022] Open
Abstract
There is growing interest in widening the genetic diversity of domestic crops using wild relatives to break linkage drag and/or introduce new adaptive traits, particularly in narrow crops such as chickpea. To this end, it is important to understand wild and domestic adaptive differences to develop greater insight into how wild traits can be exploited for crop improvement. Here, we study wild and domestic Cicer development and water-use over the lifecycle, measuring responses to reproductive water deficit, a key Mediterranean selection pressure, using mini-lysimeters (33 L round pots) in common gardens under contrasting water regimes. Wild and domestic Cicer were consistently separated by later phenology, greater water extraction and lower water use efficiency (WUE) and harvest index in the former, and much greater yield-responsiveness in the latter. Throughout the lifecycle, there was greater vegetative investment in wild, and greater reproductive investment in domestic Cicer, reflected in root and harvest indices, rates of leaf area, and pod growth. Domestic WUE was consistently greater than wild, suggesting differences in water-use regulation and partitioning. Large wild-domestic differences revealed in this study are indicative of evolution under contrasting selection pressures. Cicer domestication has selected for early phenology, greater early vigor, and reproductive efficiency, attributes well-suited to a time-delimited production system, where the crop is protected from grazing, disease, and competition, circumstances that do not pertain in the wild. Wild Cicer attributes are more competitive: higher peak rates of leaf area growth, greater ad libitum water-use, and extraction under terminal drought associated with greater vegetative dry matter allocation, leading to a lower reproductive capacity and efficiency than in domestic chickpea. These traits strengthen competitive capacity throughout the growing season and are likely to facilitate recovery from grazing, two significant selection pressures faced by wild, rather than domesticated Cicer. While increased water extraction may be useful for improving chickpea drought tolerance, this trait must be evaluated independently of the other associated wild traits. To this end, the wild-domestic populations have been developed.
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Affiliation(s)
- Jens Berger
- Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Wembley, WA, Australia
| | - Raju Pushpavalli
- Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Wembley, WA, Australia
| | - Christiane Ludwig
- Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Wembley, WA, Australia
| | - Sylvia Parsons
- Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Wembley, WA, Australia
| | - Fatma Basdemir
- Ceylanpinar Agriculture Vocational School, University of Harran, Sanliurfa, Turkey
| | - Kelly Whisson
- Commonwealth Scientific and Industrial Research Organization (CSIRO) Agriculture and Food, Wembley, WA, Australia
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22
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Blanco-Pastor JL, Barre P, Keep T, Ledauphin T, Escobar-Gutiérrez A, Roschanski AM, Willner E, Dehmer KJ, Hegarty M, Muylle H, Veeckman E, Vandepoele K, Ruttink T, Roldán-Ruiz I, Manel S, Sampoux JP. Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass. Mol Ecol Resour 2020; 21:849-870. [PMID: 33098268 DOI: 10.1111/1755-0998.13289] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 09/10/2020] [Accepted: 10/12/2020] [Indexed: 11/28/2022]
Abstract
Germplasm from perennial ryegrass (Lolium perenne L.) natural populations is useful for breeding because of its adaptation to a wide range of climates. Climate-adaptive genes can be detected from associations between genotype, phenotype and climate but an integrated framework for the analysis of these three sources of information is lacking. We used two approaches to identify adaptive loci in perennial ryegrass and their effect on phenotypic traits. First, we combined Genome-Environment Association (GEA) and GWAS analyses. Then, we implemented a new test based on a Canonical Correlation Analysis (CANCOR) to detect adaptive loci. Furthermore, we improved the previous perennial ryegrass gene set by de novo gene prediction and functional annotation of 39,967 genes. GEA-GWAS revealed eight outlier loci associated with both environmental variables and phenotypic traits. CANCOR retrieved 633 outlier loci associated with two climatic gradients, characterized by cold-dry winter versus mild-wet winter and long rainy season versus long summer, and pointed out traits putatively conferring adaptation at the extremes of these gradients. Our CANCOR test also revealed the presence of both polygenic and oligogenic climatic adaptations. Our gene annotation revealed that 374 of the CANCOR outlier loci were positioned within or close to a gene. Co-association networks of outlier loci revealed a potential utility of CANCOR for investigating the interaction of genes involved in polygenic adaptations. The CANCOR test provides an integrated framework to analyse adaptive genomic diversity and phenotypic responses to environmental selection pressures that could be used to facilitate the adaptation of plant species to climate change.
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Affiliation(s)
| | - Philippe Barre
- INRAE, Centre Nouvelle-Aquitaine-Poitiers, Lusignan, France
| | - Thomas Keep
- INRAE, Centre Nouvelle-Aquitaine-Poitiers, Lusignan, France
| | | | | | - Anna Maria Roschanski
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Malchow/Poel, Germany
| | - Evelyn Willner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Malchow/Poel, Germany
| | - Klaus J Dehmer
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Malchow/Poel, Germany
| | - Matthew Hegarty
- Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, UK
| | - Hilde Muylle
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) - Plant Sciences Unit, Melle, Belgium
| | - Elisabeth Veeckman
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) - Plant Sciences Unit, Melle, Belgium.,Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium.,Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
| | - Klaas Vandepoele
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) - Plant Sciences Unit, Melle, Belgium.,Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium.,Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Tom Ruttink
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) - Plant Sciences Unit, Melle, Belgium
| | - Isabel Roldán-Ruiz
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO) - Plant Sciences Unit, Melle, Belgium.,Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
| | - Stéphanie Manel
- CEFE, University of Montpellier, CNRS, EPHE-PSL University, IRD, Univ Paul Valéry Montpellier, Montpellier, France
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23
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Zhu H, Zhou Y, Zhai H, He S, Zhao N, Liu Q. A Novel Sweetpotato WRKY Transcription Factor, IbWRKY2, Positively Regulates Drought and Salt Tolerance in Transgenic Arabidopsis. Biomolecules 2020; 10:biom10040506. [PMID: 32230780 PMCID: PMC7226164 DOI: 10.3390/biom10040506] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/22/2020] [Accepted: 03/25/2020] [Indexed: 01/17/2023] Open
Abstract
WRKYs play important roles in plant growth, defense regulation, and stress response. However, the mechanisms through which WRKYs are involved in drought and salt tolerance have been rarely characterized in sweetpotato [Ipomoea batatas (L.) Lam.]. In this study, we cloned a WRKY gene, IbWRKY2, from sweetpotato and its expression was induced with PEG6000, NaCl, and abscisic acid (ABA). The IbWRKY2 was localized in the nucleus. The full-length protein exhibited transactivation activity, and its active domain was located in the N-terminal region. IbWRKY2-overexpressing Arabidopsis showed enhanced drought and salt tolerance. After drought and salt treatments, the contents of ABA and proline as well as the activity of superoxide dismutase (SOD) were higher in transgenic plants, while the malondialdehyde (MDA) and H2O2 contents were lower. In addition, several genes related to the ABA signaling pathway, proline biosynthesis, and the reactive oxygen species (ROS)-scavenging system, were significantly up-regulated in transgenic lines. These results demonstrate that IbWRKY2 confers drought and salt tolerance in Arabidopsis. Furthermore, IbWRKY2 was able to interact with IbVQ4, and the expression of IbVQ4 was induced by drought and salt treatments. These results provide clues regarding the mechanism by which IbWRKY2 contributes to the regulation of abiotic stress tolerance.
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Affiliation(s)
- Hong Zhu
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Yuanyuan Zhou
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
| | - Hong Zhai
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
| | - Shaozhen He
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
| | - Ning Zhao
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
| | - Qingchang Liu
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (H.Z.); (Y.Z.); (H.Z.); (S.H.); (N.Z.)
- Correspondence: ; Tel.: +86-010-6273-3710
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24
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Berger JD, Ludwig C, Whisson K. Changing water use and adaptive strategies along rainfall gradients in Mediterranean lupins. PLANT BIOLOGY (STUTTGART, GERMANY) 2020; 22:298-308. [PMID: 31758626 DOI: 10.1111/plb.13076] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 09/25/2019] [Indexed: 06/10/2023]
Abstract
There is growing interest in harnessing the genetic and adaptive diversity of crop wild relatives to improve drought resilience of elite cultivars. Rainfall gradients exert strong selection pressure on both natural and agricultural ecosystems. Understanding plant responses to these facilitates crop improvement. Wild and domesticated narrow-leafed lupin (NLL) collected along Mediterranean terminal drought stress gradients was evaluated under contrasting reproductive phase water supply in controlled field, glasshouse and cabinet studies. Plant phenology, growth and productivity, water use and stress responses were measured over time. There is an integrated suite of adaptive changes along rainfall gradients in NLL. Low rainfall ecotypes flower earlier, accumulate lower seed numbers, biomass and leaf area, and have larger root:shoot ratios than high rainfall ecotypes. Water-use is lower and stress onset slower in low compared to high rainfall ecotypes. Water-use rates and ecotypic differences in stress response (Ψleaf decline, leaf loss) are lower in NLL than yellow lupin (YL). To mitigate the effects of profligate water use, high rainfall YL ecotypes maintain higher leaf water content over declining leaf water potential than low rainfall ecotypes. There is no evidence for such specific adaptation in NLL. The data suggests that appropriate phenology is the key adaptive trait to rainfall gradients in NLL because of the flow-on effects on biomass production, fitness, transpiration and stress onset, and the lack of physiological adaptations as in YL. Accordingly, it is essential to match phenology with target environment in order to minimize risk and maximize yield potential.
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Affiliation(s)
- J D Berger
- CSIRO Agriculture and Food, Wembley, WA, Australia
| | - C Ludwig
- CSIRO Agriculture and Food, Wembley, WA, Australia
| | - K Whisson
- CSIRO Agriculture and Food, Wembley, WA, Australia
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25
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Rani A, Devi P, Jha UC, Sharma KD, Siddique KHM, Nayyar H. Developing Climate-Resilient Chickpea Involving Physiological and Molecular Approaches With a Focus on Temperature and Drought Stresses. FRONTIERS IN PLANT SCIENCE 2020; 10:1759. [PMID: 32161601 PMCID: PMC7052492 DOI: 10.3389/fpls.2019.01759] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 12/16/2019] [Indexed: 05/19/2023]
Abstract
Chickpea is one of the most economically important food legumes, and a significant source of proteins. It is cultivated in more than 50 countries across Asia, Africa, Europe, Australia, North America, and South America. Chickpea production is limited by various abiotic stresses (cold, heat, drought, salt, etc.). Being a winter-season crop in northern south Asia and some parts of the Australia, chickpea faces low-temperature stress (0-15°C) during the reproductive stage that causes substantial loss of flowers, and thus pods, to inhibit its yield potential by 30-40%. The winter-sown chickpea in the Mediterranean, however, faces cold stress at vegetative stage. In late-sown environments, chickpea faces high-temperature stress during reproductive and pod filling stages, causing considerable yield losses. Both the low and the high temperatures reduce pollen viability, pollen germination on the stigma, and pollen tube growth resulting in poor pod set. Chickpea also experiences drought stress at various growth stages; terminal drought, along with heat stress at flowering and seed filling can reduce yields by 40-45%. In southern Australia and northern regions of south Asia, lack of chilling tolerance in cultivars delays flowering and pod set, and the crop is usually exposed to terminal drought. The incidences of temperature extremes (cold and heat) as well as inconsistent rainfall patterns are expected to increase in near future owing to climate change thereby necessitating the development of stress-tolerant and climate-resilient chickpea cultivars having region specific traits, which perform well under drought, heat, and/or low-temperature stress. Different approaches, such as genetic variability, genomic selection, molecular markers involving quantitative trait loci (QTLs), whole genome sequencing, and transcriptomics analysis have been exploited to improve chickpea production in extreme environments. Biotechnological tools have broadened our understanding of genetic basis as well as plants' responses to abiotic stresses in chickpea, and have opened opportunities to develop stress tolerant chickpea.
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Affiliation(s)
- Anju Rani
- Department of Botany, Panjab University, Chandigarh, India
| | - Poonam Devi
- Department of Botany, Panjab University, Chandigarh, India
| | - Uday Chand Jha
- Department of Crop Improvement Division, Indian Institute of Pulses Research, Kanpur, India
| | - Kamal Dev Sharma
- Department of Agricultural Biotechnology, Himachal Pradesh Agricultural University, Palampur, India
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
| | - Harsh Nayyar
- Department of Botany, Panjab University, Chandigarh, India
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26
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Fang Q, Wang X, Wang H, Tang X, Liu C, Yin H, Ye S, Jiang Y, Duan Y, Luo K. The poplar R2R3 MYB transcription factor PtrMYB94 coordinates with abscisic acid signaling to improve drought tolerance in plants. TREE PHYSIOLOGY 2020; 40:46-59. [PMID: 31728530 DOI: 10.1093/treephys/tpz113] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Revised: 07/26/2019] [Accepted: 10/08/2019] [Indexed: 05/07/2023]
Abstract
In plants, R2R3 MYB transcription factors (TFs) consist of one large gene family and are involved in the regulation of many developmental processes and various stresses. However, the functions of most of MYB TFs in woody plants remain unknown. Here, PtrMYB94, an R2R3 MYB TF from Populus trichocarpa, is characterized to be involved in the regulation of drought responses and abscisic acid (ABA) signaling. PtrMYB94 encodes a nuclear-localized R2R3 MYB TF. RT-PCR results showed that the PtrMYB94 transcripts were relatively abundant in leaves and stems, and were induced rapidly in response to dehydration stress. Overexpression of PtrMYB94 improved plant drought responses, suggesting that this MYB TF may functionally regulate poplar adaptability to drought stress. Furthermore, the analysis of transcriptional expression and PtrMYB94 promoter: GUS activity showed that PtrMYB94 responded to ABA induction. PtrMYB94-overexpressing plants exhibited the inhibition of seed germination compared with the wild-type (WT) control under ABA exposure condition. The ABA content was evidently increased in the PtrMYB94-overexpressing plants relative to the WT plants. In addition, transcript levels of several ABA- and drought-responsive genes, such as ABA1 and DREB2B, were up-regulated. Taken together, our results suggest that PtrMYB94 is involved in an ABA-dependent drought stress regulation in Populus.
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Affiliation(s)
- Qing Fang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
- Hubei Key Laboratory of Biological Resources Protection and Utilization, School of Biological Science and Technology, Hubei Minzu University, Enshi 445000, China
| | - Xianqiang Wang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Haiyang Wang
- Hubei Key Laboratory of Biological Resources Protection and Utilization, School of Biological Science and Technology, Hubei Minzu University, Enshi 445000, China
| | - Xiaowen Tang
- Hubei Key Laboratory of Biological Resources Protection and Utilization, School of Biological Science and Technology, Hubei Minzu University, Enshi 445000, China
| | - Chi Liu
- Hubei Key Laboratory of Biological Resources Protection and Utilization, School of Biological Science and Technology, Hubei Minzu University, Enshi 445000, China
| | - Heng Yin
- Hubei Key Laboratory of Biological Resources Protection and Utilization, School of Biological Science and Technology, Hubei Minzu University, Enshi 445000, China
| | - Shenglong Ye
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Yuanzhong Jiang
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Yanjiao Duan
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Keming Luo
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest University, Chongqing 400715, China
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27
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Sadok W, Schoppach R. Potential involvement of root auxins in drought tolerance by modulating nocturnal and daytime water use in wheat. ANNALS OF BOTANY 2019; 124:969-978. [PMID: 30918962 PMCID: PMC6881217 DOI: 10.1093/aob/mcz023] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 02/06/2019] [Indexed: 05/24/2023]
Abstract
BACKGROUND AND AIMS The ability of wheat genotypes to save water by reducing their transpiration rate (TR) at times of the day with high vapour pressure deficit (VPD) has been linked to increasing yields in terminal drought environments. Further, recent evidence shows that reducing nocturnal transpiration (TRN) could amplify water saving. Previous research indicates that such traits involve a root-based hydraulic limitation, but the contribution of hormones, particularly auxin and abscisic acid (ABA), has not been explored to explain the shoot-root link. In this investigation, based on physiological, genetic and molecular evidence gathered on a mapping population, we hypothesized that root auxin accumulation regulates whole-plant water use during both times of the day. METHODS Eight double-haploid lines were selected from a mapping population descending from two parents with contrasting water-saving strategies and root hydraulic properties. These spanned the entire range of slopes of TR responses to VPD and TRN encountered in the population. We examined daytime/night-time auxin and ABA contents in the roots and the leaves in relation to hydraulic traits that included whole-plant TR, plant hydraulic conductance (KPlant), slopes of TR responses to VPD and leaf-level anatomical traits. KEY RESULTS Root auxin levels were consistently genotype-dependent in this group irrespective of experiments and times of the day. Daytime root auxin concentrations were found to be strongly and negatively correlated with daytime TR, KPlant and the slope of TR response to VPD. Night-time root auxin levels significantly and negatively correlated with TRN. In addition, daytime and night-time leaf auxin and ABA concentrations did not correlate with any of the examined traits. CONCLUSIONS The above results indicate that accumulation of auxin in the root system reduces daytime and night-time water use and modulates plant hydraulic properties to enable the expression of water-saving traits that have been associated with enhanced yields under drought.
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Affiliation(s)
- Walid Sadok
- Department of Agronomy and Plant Genetics, Upper Buford Circle, University of Minnesota, St. Paul, MN, USA
| | - Rémy Schoppach
- Earth and Life Institute, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
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28
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Weiner J. Looking in the Wrong Direction for Higher-Yielding Crop Genotypes. TRENDS IN PLANT SCIENCE 2019; 24:927-933. [PMID: 31358472 DOI: 10.1016/j.tplants.2019.07.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Revised: 06/27/2019] [Accepted: 07/04/2019] [Indexed: 05/06/2023]
Abstract
A misunderstanding of evolution via natural selection has led many plant physiologists and genetic engineers to look in the wrong direction for higher-yielding crop genotypes. Large investments in attempts to make 'better' plants by improving basic physiological processes are not likely to succeed because natural selection has been optimizing these for millions of years. Increases in yield from plant breeding have usually resulted from decreases, not increases, in plant fitness. Examples include reduced plant height and more vertical root growth in cereals. Plant scientists and breeders should generate hypotheses based on what evolutionary biologists call 'group selection', looking for attributes that increase yield in ways that decrease fitness, rather than attempting to improve upon the achievements of natural selection.
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Affiliation(s)
- Jacob Weiner
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark.
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29
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Howell T, Moriconi JI, Zhao X, Hegarty J, Fahima T, Santa-Maria GE, Dubcovsky J. A wheat/rye polymorphism affects seminal root length and yield across different irrigation regimes. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:4027-4037. [PMID: 30976805 PMCID: PMC6685657 DOI: 10.1093/jxb/erz169] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 03/29/2019] [Indexed: 05/23/2023]
Abstract
The introgression of a small segment of wheat (Triticum aestivum L.) chromosome arm 1BS in the distal region of the rye (Secale cereale L.) 1RS.1BL arm translocation in wheat (henceforth 1RSRW) was previously associated with reduced grain yield, carbon isotope discrimination, and stomatal conductance, suggesting reduced access to soil moisture. Here we show that lines with the normal 1RS arm have longer roots than lines with the 1RSRW arm in both field and hydroponic experiments. In the 1RSRW lines, differences in seminal root length were associated with a developmentally regulated arrest of the root apical meristem (RAM). Approximately 10 d after germination, the seminal roots of the 1RSRW plants showed a gradual reduction in elongation rate, and stopped growing a week later. Seventeen days after germination, the roots of the 1RSRW plants showed altered gradients of reactive oxygen species and emergence of lateral roots close to the RAM, suggesting changes in the root meristem. The 1RSRW lines also showed reduced biomass (estimated by the normalized difference vegetation index) and grain yield relative to the 1RS lines, with larger differences under reduced or excessive irrigation than under normal irrigation. These results suggest that this genetic variation could be useful to modulate root architecture.
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Affiliation(s)
- Tyson Howell
- Department of Plant Sciences, University of California, Davis, CA, USA
| | - Jorge I Moriconi
- Instituto Tecnológico Chascomús (IIB-INTECH), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and Universidad Nacional de San Martín (UNSAM), Chascomús, Buenos Aires, Argentina
| | - Xueqiang Zhao
- Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
| | - Joshua Hegarty
- Department of Plant Sciences, University of California, Davis, CA, USA
| | - Tzion Fahima
- Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel
| | - Guillermo E Santa-Maria
- Instituto Tecnológico Chascomús (IIB-INTECH), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and Universidad Nacional de San Martín (UNSAM), Chascomús, Buenos Aires, Argentina
| | - Jorge Dubcovsky
- Department of Plant Sciences, University of California, Davis, CA, USA
- Howard Hughes Medical Institute, Chevy Chase, MD USA
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Afzal S, Sirohi P, Yadav AK, Singh MP, Kumar A, Singh NK. A comparative screening of abiotic stress tolerance in early flowering rice mutants. J Biotechnol 2019; 302:112-122. [DOI: 10.1016/j.jbiotec.2019.07.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Revised: 06/20/2019] [Accepted: 07/03/2019] [Indexed: 10/26/2022]
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Zotova L, Kurishbayev A, Jatayev S, Goncharov NP, Shamambayeva N, Kashapov A, Nuralov A, Otemissova A, Sereda S, Shvidchenko V, Lopato S, Schramm C, Jenkins C, Soole K, Langridge P, Shavrukov Y. The General Transcription Repressor TaDr1 Is Co-expressed With TaVrn1 and TaFT1 in Bread Wheat Under Drought. Front Genet 2019; 10:63. [PMID: 30800144 PMCID: PMC6375888 DOI: 10.3389/fgene.2019.00063] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 01/24/2019] [Indexed: 12/31/2022] Open
Abstract
The general transcription repressor, TaDr1 gene, was identified during screening of a wheat SNP database using the Amplifluor-like SNP marker KATU-W62. Together with two genes described earlier, TaDr1A and TaDr1B, they represent a set of three homeologous genes in the wheat genome. Under drought, the total expression profiles of all three genes varied between different bread wheat cultivars. Plants of four high-yielding cultivars exposed to drought showed a 2.0-2.4-fold increase in TaDr1 expression compared to controls. Less strong, but significant 1.3-1.8-fold up-regulation of the TaDr1 transcript levels was observed in four low-yielding cultivars. TaVrn1 and TaFT1, which controls the transition to flowering, revealed similar profiles of expression as TaDr1. Expression levels of all three genes were in good correlation with grain yields of evaluated cultivars growing in the field under water-limited conditions. The results could indicate the involvement of all three genes in the same regulatory pathway, where the general transcription repressor TaDr1 may control expression of TaVrn1 and TaFT1 and, consequently, flowering time. The strength of these genes expression can lead to phenological changes that affect plant productivity and hence explain differences in the adaptation of the examined wheat cultivars to the dry environment of Northern and Central Kazakhstan. The Amplifluor-like SNP marker KATU-W62 used in this work can be applied to the identification of wheat cultivars differing in alleles at the TaDr1 locus and in screening hybrids.
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Affiliation(s)
- Lyudmila Zotova
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Akhylbek Kurishbayev
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Satyvaldy Jatayev
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Nikolay P. Goncharov
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Nazgul Shamambayeva
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Azamat Kashapov
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Arystan Nuralov
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Ainur Otemissova
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Sergey Sereda
- A.F.Khristenko Karaganda Agricultural Experimental Station, Karaganda, Kazakhstan
| | - Vladimir Shvidchenko
- Faculty of Agronomy, S.Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Sergiy Lopato
- Biological Sciences, College of Science and Engineering, Flinders University, Bedford Park, SA, Australia
| | - Carly Schramm
- Biological Sciences, College of Science and Engineering, Flinders University, Bedford Park, SA, Australia
| | - Colin Jenkins
- Biological Sciences, College of Science and Engineering, Flinders University, Bedford Park, SA, Australia
| | - Kathleen Soole
- Biological Sciences, College of Science and Engineering, Flinders University, Bedford Park, SA, Australia
| | - Peter Langridge
- School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
- Wheat Initiative, Julius Kühn-Institut, Berlin, Germany
| | - Yuri Shavrukov
- Biological Sciences, College of Science and Engineering, Flinders University, Bedford Park, SA, Australia
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Wetzler DE, Fuchs Wightman F, Bucci HA, Rinaldi J, Caramelo JJ, Iusem ND, Ricardi MM. Conformational plasticity of the intrinsically disordered protein ASR1 modulates its function as a drought stress-responsive gene. PLoS One 2018; 13:e0202808. [PMID: 30138481 PMCID: PMC6107238 DOI: 10.1371/journal.pone.0202808] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Accepted: 08/09/2018] [Indexed: 11/18/2022] Open
Abstract
Plants in arid zones are constantly exposed to drought stress. The ASR protein family (Abscisic, Stress, Ripening) -a subgroup of the late embryogenesis abundant superfamily- is involved in the water stress response and adaptation to dry environments. Tomato ASR1, as well as other members of this family, is an intrinsically disordered protein (IDP) that functions as a transcription factor and a chaperone. Here we employed different biophysical techniques to perform a deep in vitro characterization of ASR1 as an IDP and showed how both environmental factors and in vivo targets modulate its folding. We report that ASR1 adopts different conformations such as α-helix or polyproline type II in response to environmental changes. Low temperatures and low pH promote the polyproline type II conformation (PII). While NaCl increases PII content and slightly destabilizes α-helix conformation, PEG and glycerol have an important stabilizing effect of α-helix conformation. The binding of Zn2+in the low micromolar range promotes α-helix folding, while extra Zn2+ results in homo-dimerization. The ASR1-DNA binding is sequence specific and dependent on Zn2+. ASR1 chaperone activity does not change upon the structure induction triggered by the addition of Zn2+. Furthermore, trehalose, which has no effect on the ASR1 structure by itself, showed a synergistic effect on the ASR1-driven heat shock protection towards the reporter enzyme citrate synthase (CS). These observations prompted the development of a FRET reporter to sense ASR1 folding in vivo. Its performance was confirmed in Escherichia coli under saline and osmotic stress conditions, representing a promising probe to be used in plant cells. Overall, this work supports the notion that ASR1 plasticity is a key feature that facilitates its response to drought stress and its interaction with specific targets.
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Affiliation(s)
- Diana E. Wetzler
- Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN), CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina
- * E-mail: (DW); (MR)
| | - Federico Fuchs Wightman
- Departamento de Fisiología y Biología Molecular y Celular (FBMC), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Hernan A. Bucci
- Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN), CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Jimena Rinaldi
- Fundación Instituto Leloir, Buenos Aires, Argentina e Instituto de investigaciones Bioquímicas de Buenos Aires (IIBBA- CONICET), Buenos Aires, Argentina
| | - Julio J. Caramelo
- Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Fundación Instituto Leloir, Buenos Aires, Argentina e Instituto de investigaciones Bioquímicas de Buenos Aires (IIBBA- CONICET), Buenos Aires, Argentina
| | - Norberto D. Iusem
- Departamento de Fisiología y Biología Molecular y Celular (FBMC), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Martiniano M. Ricardi
- Departamento de Fisiología y Biología Molecular y Celular (FBMC), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina
- * E-mail: (DW); (MR)
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Abstract
Humans have domesticated hundreds of plant and animal species as sources of food, fiber, forage, and tools over the past 12,000 years, with manifold effects on both human society and the genetic structure of the domesticated species. The outcomes of crop domestication were shaped by selection driven by human preferences, cultivation practices, and agricultural environments, as well as other population genetic processes flowing from the ensuing reduction in effective population size. It is obvious that any selection imposes a reduction of diversity, favoring preferred genotypes, such as nonshattering seeds or increased palatability. Furthermore, agricultural practices greatly reduced effective population sizes of crops, allowing genetic drift to alter genotype frequencies. Current advances in molecular technologies, particularly of genome sequencing, provide evidence of human selection acting on numerous loci during and after crop domestication. Population-level molecular analyses also enable us to clarify the demographic histories of the domestication process itself, which, together with expanded archaeological studies, can illuminate the origins of crops. Domesticated plant species are found in 160 taxonomic families. Approximately 2500 species have undergone some degree of domestication, and 250 species are considered to be fully domesticated. The evolutionary trajectory from wild to crop species is a complex process. Archaeological records suggest that there was a period of predomestication cultivation while humans first began the deliberate planting of wild stands that had favorable traits. Later, crops likely diversified as they were grown in new areas, sometimes beyond the climatic niche of their wild relatives. However, the speed and level of human intentionality during domestication remains a topic of active discussion. These processes led to the so-called domestication syndrome, that is, a group of traits that can arise through human preferences for ease of harvest and growth advantages under human propagation. These traits included reduced dispersal ability of seeds and fruits, changes to plant structure, and changes to plant defensive characteristics and palatability. Domestication implies the action of selective sweeps on standing genetic variation, as well as new genetic variation introduced via mutation or introgression. Furthermore, genetic bottlenecks during domestication or during founding events as crops moved away from their centers of origin may have further altered gene pools. To date, a few hundred genes and loci have been identified by classical genetic and association mapping as targets of domestication and postdomestication divergence. However, only a few of these have been characterized, and for even fewer is the role of the wild-type allele in natural populations understood. After domestication, only favorable haplotypes are retained around selected genes, which creates a genetic valley with extremely low genetic diversity. These “selective sweeps” can allow mildly deleterious alleles to come to fixation and may create a genetic load in the cultivated gene pool. Although the population-wide genomic consequences of domestication offer several predictions for levels of the genetic diversity in crops, our understanding of how this diversity corresponds to nutritional aspects of crops is not well understood. Many studies have found that modern cultivars have lower levels of key micronutrients and vitamins. We suspect that selection for palatability and increased yield at domestication and during postdomestication divergence exacerbated the low nutrient levels of many crops, although relatively little work has examined this question. Lack of diversity in modern germplasm may further limit our capacity to breed for higher nutrient levels, although little effort has gone into this beyond a handful of staple crops. This is an area where an understanding of domestication across many crop taxa may provide the necessary insight for breeding more nutritious crops in a rapidly changing world.
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Volaire F. A unified framework of plant adaptive strategies to drought: Crossing scales and disciplines. GLOBAL CHANGE BIOLOGY 2018; 24:2929-2938. [PMID: 29350812 DOI: 10.1111/gcb.14062] [Citation(s) in RCA: 105] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Accepted: 12/21/2017] [Indexed: 05/07/2023]
Abstract
Plant adaptation to drought has been extensively studied at many scales from ecology to molecular biology across a large range of model species. However, the conceptual frameworks underpinning the definition of plant strategies, and the terminology used across the different disciplines and scales are not analogous. 'Drought resistance' for instance refers to plant responses as different as the maintenance of growth and productivity in crops, to the survival and recovery in perennial woody or grassland species. Therefore, this paper aims to propose a unified conceptual framework of plant adaptive strategies to drought based on a revised terminology in order to enhance comparative studies. Ecological strategies encapsulate plant adaptation to multidimensional variation in resource variability but cannot account for the dynamic and short-term responses to fluctuations in water availability. Conversely, several plant physiological strategies have been identified along the mono-dimensional gradient of water availability in a given environment. According to a revised terminology, dehydration escape, dehydration avoidance, dehydration tolerance, dormancy, and desiccation tolerance are clearly distinguishable. Their sequential expression is expressed as water deficit increases while cavitation tolerance is proposed here to be a major hydraulic strategy underpinning adaptive responses to drought of vascular plants. This continuum of physiological strategies can be interpreted in the context of the ecological trade-off between water-acquisition vs. water-conservation, since growth maintenance is associated with fast water use under moderate drought while plant survival after growth cessation is associated with slow water use under severe drought. Consequently, the distinction between 'drought resistance' and 'drought survival', is emphasized as crucial to ensure a correct interpretation of plant strategies since 'knowing when not to grow' does not confer 'drought resistance' but may well enhance 'drought survival'. This framework proposal should improve cross-fertilization between disciplines to help tackle the increasing worldwide challenges that drought poses to plant adaptation.
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Affiliation(s)
- Florence Volaire
- INRA USC 1338, CEFE UMR 5175, CNRS, Université de Montpellier - Université Paul Valéry - EPHE, Montpellier Cedex, France
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Descamps C, Quinet M, Baijot A, Jacquemart AL. Temperature and water stress affect plant-pollinator interactions in Borago officinalis (Boraginaceae). Ecol Evol 2018; 8:3443-3456. [PMID: 29607037 PMCID: PMC5869376 DOI: 10.1002/ece3.3914] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Revised: 01/03/2018] [Accepted: 01/14/2018] [Indexed: 01/23/2023] Open
Abstract
Climate change alters the abiotic constraints faced by plants, including increasing temperature and water stress. These changes may affect flower development and production of flower rewards, thus altering plant–pollinator interactions. Here, we investigated the consequences of increased temperature and water stress on plant growth, floral biology, flower‐reward production, and insect visitation of a widespread bee‐visited species, Borago officinalis. Plants were grown for 5 weeks under three temperature regimes (21, 24, and 27°C) and two watering regimes (well‐watered and water‐stressed). Plant growth was more affected by temperature rise than water stress, and the reproductive growth was affected by both stresses. Vegetative traits were stimulated at 24°C, but impaired at 27°C. Flower development was mainly affected by water stress, which decreased flower number (15 ± 2 flowers/plant in well‐watered plants vs. 8 ± 1 flowers/plant under water stress). Flowers had a reduced corolla surface under temperature rise and water stress (3.8 ± 0.5 cm2 in well‐watered plants at 21°C vs. 2.2 ± 0.1 cm2 in water‐stressed plants at 27°C). Both constraints reduced flower‐reward production. Nectar sugar content decreased from 3.9 ± 0.3 mg/flower in the well‐watered plants at 21°C to 1.3 ± 0.4 mg/flower in the water‐stressed plants at 27°C. Total pollen quantity was not affected, but pollen viability decreased from 79 ± 4% in the well‐watered plants at 21°C to 25 ± 9% in the water‐stressed plants at 27°C. Flowers in the well‐watered plants at 21°C received at least twice as many bumblebee visits compared with the other treatments. In conclusion, floral modifications induced by abiotic stresses related to climate change affect insect behavior and alter plant–pollinator interactions.
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Affiliation(s)
- Charlotte Descamps
- Research Group « Genetics, Reproduction, Populations », Earth and Life Institute-Agronomy Université catholique de Louvain Louvain-la-Neuve Belgium
| | - Muriel Quinet
- Research Group « Genetics, Reproduction, Populations », Earth and Life Institute-Agronomy Université catholique de Louvain Louvain-la-Neuve Belgium
| | - Aurélie Baijot
- Research Group « Genetics, Reproduction, Populations », Earth and Life Institute-Agronomy Université catholique de Louvain Louvain-la-Neuve Belgium
| | - Anne-Laure Jacquemart
- Research Group « Genetics, Reproduction, Populations », Earth and Life Institute-Agronomy Université catholique de Louvain Louvain-la-Neuve Belgium
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Li Y, Ruperao P, Batley J, Edwards D, Khan T, Colmer TD, Pang J, Siddique KHM, Sutton T. Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data. FRONTIERS IN PLANT SCIENCE 2018; 9:190. [PMID: 29515606 PMCID: PMC5825913 DOI: 10.3389/fpls.2018.00190] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Accepted: 02/01/2018] [Indexed: 05/06/2023]
Abstract
Drought tolerance is a complex trait that involves numerous genes. Identifying key causal genes or linked molecular markers can facilitate the fast development of drought tolerant varieties. Using a whole-genome resequencing approach, we sequenced 132 chickpea varieties and advanced breeding lines and found more than 144,000 single nucleotide polymorphisms (SNPs). We measured 13 yield and yield-related traits in three drought-prone environments of Western Australia. The genotypic effects were significant for all traits, and many traits showed highly significant correlations, ranging from 0.83 between grain yield and biomass to -0.67 between seed weight and seed emergence rate. To identify candidate genes, the SNP and trait data were incorporated into the SUPER genome-wide association study (GWAS) model, a modified version of the linear mixed model. We found that several SNPs from auxin-related genes, including auxin efflux carrier protein (PIN3), p-glycoprotein, and nodulin MtN21/EamA-like transporter, were significantly associated with yield and yield-related traits under drought-prone environments. We identified four genetic regions containing SNPs significantly associated with several different traits, which was an indication of pleiotropic effects. We also investigated the possibility of incorporating the GWAS results into a genomic selection (GS) model, which is another approach to deal with complex traits. Compared to using all SNPs, application of the GS model using subsets of SNPs significantly associated with the traits under investigation increased the prediction accuracies of three yield and yield-related traits by more than twofold. This has important implication for implementing GS in plant breeding programs.
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Affiliation(s)
- Yongle Li
- School of Agriculture, Food and Wine, The University of Adelaide, Adelaide, SA, Australia
| | - Pradeep Ruperao
- School of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD, Australia
| | - Jacqueline Batley
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - David Edwards
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Tanveer Khan
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Timothy D. Colmer
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Jiayin Pang
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Kadambot H. M. Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Tim Sutton
- School of Agriculture, Food and Wine, The University of Adelaide, Adelaide, SA, Australia
- South Australian Research and Development Institute, Adelaide, SA, Australia
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Blessing CH, Mariette A, Kaloki P, Bramley H. Profligate and conservative: water use strategies in grain legumes. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:349-369. [PMID: 29370385 DOI: 10.1093/jxb/erx415] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2017] [Accepted: 10/23/2017] [Indexed: 06/07/2023]
Abstract
Yields of grain legumes are constrained by available water. Thus, it is crucial to understand traits influencing water uptake and the efficiency of using water to produce biomass. Global comparisons and comparisons at specific locations reveal that water use of different grain legumes is very similar, which indicates that water use efficiency varies over a wide range due to differences in biomass and yield. Moreover, yield increases more per millimetre of water used in cool season grain legumes than warm season species. Although greater contrasts have been observed across species and genotypes at the pot and lysimeter level, agronomic factors need to be taken into account when scaling those studies to field-level responses. Conservative water use strategies in grain legumes such as low stomatal conductance as approximated by low photosynthetic carbon isotope discrimination reduces yield potential, whereas temporal adjustments of stomatal conductance within the growing season and in response to environmental factors (such as vapour pressure deficit) helps to optimize the trade-off between carbon gain and water loss. Furthermore, improved photosynthetic capacity, reduced mesophyll conductance, reduced boundary layer, and re-fixation of respired CO2 were identified as traits that are beneficial without water deficit, but also under terminal and transient drought. Genotypic variability in some grain legume species has been observed for several traits that influence water use, water use efficiency, and yield, including root length and the temporal pattern of water use, but even more variation is expected from wild relatives. Albeit that N2 fixation decreases under drought, its impact on water use is still largely unknown, but the nitrogen source influences gas exchange and, thus, transpiration efficiency. This review concludes that conservative traits are needed under conditions of terminal drought to help maintain soil moisture until the pod-filling period, but profligate traits, if tightly regulated, are important under conditions of transient drought in order to profit from short intermittent periods of available soil moisture.
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Affiliation(s)
- Carola H Blessing
- The University of Sydney, School of Life and Environmental Sciences, Sydney Institute of Agriculture, Sydney, New South Wales, Australia
| | - Alban Mariette
- The University of Sydney, Plant Breeding Institute, Narrabri, New South Wales, Australia
- Biology Department, Université de Rennes 1, Campus de Beaulieu, Rennes Cedex, France
| | - Peter Kaloki
- The University of Sydney, School of Life and Environmental Sciences, Sydney Institute of Agriculture, Sydney, New South Wales, Australia
- The University of Sydney, Plant Breeding Institute, Narrabri, New South Wales, Australia
| | - Helen Bramley
- The University of Sydney, School of Life and Environmental Sciences, Sydney Institute of Agriculture, Sydney, New South Wales, Australia
- The University of Sydney, Plant Breeding Institute, Narrabri, New South Wales, Australia
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Physiological and biochemical responses involved in water deficit tolerance of nitrogen-fixing Vicia faba. PLoS One 2017; 12:e0190284. [PMID: 29281721 PMCID: PMC5744999 DOI: 10.1371/journal.pone.0190284] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2017] [Accepted: 12/11/2017] [Indexed: 01/24/2023] Open
Abstract
Climate change is increasingly impacting the water deficit over the world. Because of drought and the high pressure of the rising human population, water is becoming a scarce and expensive commodity, especially in developing countries. The identification of crops presenting a higher acclimation to drought stress is thus an important objective in agriculture. The present investigation aimed to assess the adaptation of three Vicia faba genotypes, Aguadulce (AD), Luz d'Otonio (LO) and Reina Mora (RM) to water deficit. Multiple physiological and biochemical parameters were used to analyse the response of the three genotypes to two soil water contents (80% and 40% of field capacity). A significant lower decrease in shoot, root and nodule dry weight was observed for AD compared to LO and RM. The better growth performance of AD was correlated to higher carbon and nitrogen content than in LO and RM under water deficit. Leaf parameters such as relative water content, mass area, efficiency of photosystem II and chlorophyll and carotenoid content were significantly less affected in AD than in LO and RM. Significantly higher accumulation of proline was correlated to the higher performance of AD compared to LO and RM. Additionally, the better growth of AD genotype was related to an important mobilisation of antioxidant enzyme activities such as ascorbate peroxidase and catalase. Taken together, these results allow us to suggest that AD is a water deficit tolerant genotype compared to LO and RM. Our multiple physiological and biochemical analyses show that nitrogen content, leaf proline accumulation, reduced leaf hydrogen peroxide accumulation and leaf antioxidant enzymatic activities (ascorbate peroxidase, guaiacol peroxidase, catalase and polyphenol oxidase) are potential biological markers useful to screen for water deficit resistant Vicia faba genotypes.
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Liu X, Li X, Dai C, Zhou J, Yan T, Zhang J. Improved short-term drought response of transgenic rice over-expressing maize C 4 phosphoenolpyruvate carboxylase via calcium signal cascade. JOURNAL OF PLANT PHYSIOLOGY 2017; 218:206-221. [PMID: 28888162 DOI: 10.1016/j.jplph.2017.08.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 08/22/2017] [Accepted: 08/22/2017] [Indexed: 06/07/2023]
Abstract
To understand the link between long-term drought tolerance and short-term drought responses in plants, transgenic rice (Oryza sativa L.) plants over-expressing the maize C4-pepc gene encoding phosphoenolpyruvate carboxylase (PC) and wild-type (WT) rice plants were subjected to PEG 6000 treatments to simulate drought stress. Compared with WT, PC had the higher survival rate and net photosynthetic rate after 16days of drought treatment, and had higher relative water content in leaves after 2h of drought treatment as well, conferring drought tolerance. WT accumulated higher amounts of malondialdehyde, superoxide radicals, and H2O2 than PC under the 2-h PEG 6000 treatment, indicating greater damages in WT. Results from pretreatments with a Ca2+ chelator and/or antagonist showed that the regulation of the early drought response in PC was Ca2+-dependent. The NO and H2O2 levels in PC lines were also up-regulated via Ca2+ signals, indicating that Ca2+ in PC lines also reacted upstream of NO and H2O2. 2-h drought treatment increased the transcripts of CPK9 and CPK4 in PC via positive up-regulation of Ca2+. The transcripts of NAC6 [NACs (NAM, ATAF1, ATAF2, and CUC2)] and bZIP60 (basic leucine zipper, bZIP) were up-regulated, but those of DREB2B (dehydration-responsive element-binding protein, DREB) were down-regulated, both via Ca2+ signals in PC. PEPC activity, expressions of C4-pepc, and the antioxidant enzyme activities in PC lines were up-regulated via Ca2+. These results indicated that Ca2+ signals in PC lines can up-regulate the NAC6 and bZIP60 and the downstream targets for early drought responses, conferring drought tolerance for the long term.
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Affiliation(s)
- Xiaolong Liu
- Institute of Food Crops, Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice R and D Center, Nanjing Branch, China National Center for Rice Improvement, Nanjing 210014, PR China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Xia Li
- Institute of Food Crops, Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice R and D Center, Nanjing Branch, China National Center for Rice Improvement, Nanjing 210014, PR China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China.
| | - Chuanchao Dai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, PR China
| | - Jiayu Zhou
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, PR China
| | - Ting Yan
- Institute of Food Crops, Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice R and D Center, Nanjing Branch, China National Center for Rice Improvement, Nanjing 210014, PR China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Jinfei Zhang
- Institute of Food Crops, Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice R and D Center, Nanjing Branch, China National Center for Rice Improvement, Nanjing 210014, PR China
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Bandurska H, Niedziela J, Pietrowska-Borek M, Nuc K, Chadzinikolau T, Radzikowska D. Regulation of proline biosynthesis and resistance to drought stress in two barley (Hordeum vulgare L.) genotypes of different origin. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 118:427-437. [PMID: 28711792 DOI: 10.1016/j.plaphy.2017.07.006] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 06/26/2017] [Accepted: 07/06/2017] [Indexed: 05/21/2023]
Abstract
Drought is considered the main abiotic stress factor that inhibits growth of crop plants (including barley), limiting yield in many regions worldwide. Predicted climate changes show that in future the frequency and intensity of drought events will rise, so crops that are resistant to this stress are in demand. One of the adaptive metabolic responses to drought is the accumulation of proline. The aim of this study was to examine the effect of 10-day drought on tissue dehydration and proline biosynthesis in leaves as well as in roots of barley genotypes of different origin: the Syrian breeding line Cam/B1/CI and the German cultivar Maresi. The involvement of Δ1 pyrroline-5-carboxylate synthetase (P5CS), the expression of the P5CS gene and ABA in proline synthesis under drought were also studied. Finally, we examined the resistance of tested genotypes to applied drought using chlorophyll fluorescence parameters and above-ground dry matter accumulation. Drought caused a gradual decrease of water content and an increase of proline and ABA content in roots and leaves of both genotypes. A statistically significant positive correlation between proline accumulation and activity of P5CS was also revealed. The skyrocketing increase of P5CS activity and proline accumulation was proceeded by transcriptional up-regulation of P5CS. The relationships between changes in P5CS expression, P5CS activity and ABA content show that the latter compound is involved in drought-induced proline synthesis at the transcription and enzyme activity level. The examined barley genotypes were equally resistant to applied moderate drought stress regardless of the differences in the level of proline accumulated.
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Affiliation(s)
- Hanna Bandurska
- Department of Plant Physiology, Poznań University of Life Sciences, Wołyńska 35, 60-637 Poznań, Poland.
| | - Justyna Niedziela
- Department of Plant Physiology, Poznań University of Life Sciences, Wołyńska 35, 60-637 Poznań, Poland
| | - Małgorzata Pietrowska-Borek
- Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 11, 60-632 Poznań, Poland
| | - Katarzyna Nuc
- Department of Biochemistry and Biotechnology, Poznań University of Life Sciences, Dojazd 11, 60-632 Poznań, Poland
| | - Tamara Chadzinikolau
- Department of Plant Physiology, Poznań University of Life Sciences, Wołyńska 35, 60-637 Poznań, Poland
| | - Dominika Radzikowska
- Department of Agronomy, Poznań University of Life Sciences, Dojazd 11, 60-632 Poznań, Poland
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Wang W, Jiang W, Liu J, Li Y, Gai J, Li Y. Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response. BMC Genomics 2017; 18:518. [PMID: 28687067 PMCID: PMC5501352 DOI: 10.1186/s12864-017-3908-y] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 06/27/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Aldehyde dehydrogenases (ALDHs) represent a group of enzymes that detoxify aldehydes by facilitating their oxidation to carboxylic acids, and have been shown to play roles in plant response to abiotic stresses. However, the comprehensive analysis of ALDH superfamily in soybean (Glycine max) has been limited. RESULTS In present study, a total of 53 GmALDHs were identified in soybean, and grouped into 10 ALDH families according to the ALDH Gene Nomenclature Committee and phylogenetic analysis. These groupings were supported by their gene structures and conserved motifs. Soybean ALDH superfamily expanded mainly by whole genome duplication/segmental duplications. Gene network analysis identified 1146 putative co-functional genes of 51 GmALDHs. Gene Ontology (GO) enrichment analysis suggested the co-functional genes of these 51 GmALDHs were enriched (FDR < 1e-3) in the process of lipid metabolism, photosynthesis, proline catabolism, and small molecule catabolism. In addition, 22 co-functional genes of GmALDHs are related to plant response to water deprivation/water transport. GmALDHs exhibited various expression patterns in different soybean tissues. The expression levels of 13 GmALDHs were significantly up-regulated and 14 down-regulated in response to water deficit. The occurrence frequencies of three drought-responsive cis-elements (ABRE, CRT/DRE, and GTGCnTGC/G) were compared in GmALDH genes that were up-, down-, or non-regulated by water deficit. Higher frequency of these three cis-elements was observed for the group of up-regulated GmALDH genes as compared to the group of down- or non- regulated GmALDHs by drought stress, implying their potential roles in the regulation of soybean response to drought stress. CONCLUSIONS A total of 53 ALDH genes were identified in soybean genome and their phylogenetic relationships and duplication patterns were analyzed. The potential functions of GmALDHs were predicted by analyses of their co-functional gene networks, gene expression profiles, and cis-regulatory elements. Three GmALDH genes, including GmALDH3H2, GmALDH12A2 and GmALDH18B3, were highly induced by drought stress in soybean leaves. Our study provides a foundation for future investigations of GmALDH gene function in soybean.
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Affiliation(s)
- Wei Wang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
| | - Wei Jiang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
| | - Juge Liu
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
| | - Yang Li
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
| | - Junyi Gai
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
| | - Yan Li
- National Key Laboratory of Crop Genetics and Germplasm Enhancement / National Center for Soybean Improvement / Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture) / Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu China
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Berger JD, Shrestha D, Ludwig C. Reproductive Strategies in Mediterranean Legumes: Trade-Offs between Phenology, Seed Size and Vigor within and between Wild and Domesticated Lupinus Species Collected along Aridity Gradients. FRONTIERS IN PLANT SCIENCE 2017; 8:548. [PMID: 28450875 PMCID: PMC5390039 DOI: 10.3389/fpls.2017.00548] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Accepted: 03/27/2017] [Indexed: 05/18/2023]
Abstract
To investigate wild and domesticated Mediterranean annual reproductive strategies, common garden comparisons of Old World lupins collected along aridity gradients were initiated. These are excellent candidates for ecophysiology, being widely distributed across contrasting environments, having distinct domestication histories, from ancient Lupinus albus to recently domesticated Lupinus angustifolius and Lupinus luteus, facilitating the study of both natural and human selection. Strong trade-offs between seed size, early vigor and phenology were observed: vigor increasing, and flowering becoming earlier with increasing seed size. Despite large specific differences in all these traits, natural and human selection have operated in very similar ways in all 3 species. In wild material, as collection environments became drier and hotter, phenology became earlier, while seed size, early vigor and reproductive investment increased. Wild and domesticated germplasm separated along similar lines. Within similar habitats, domesticated material was consistently earlier, with larger seeds, greater early vigor and higher reproductive investment than wild, suggesting selection for both early establishment and timely maturity/drought escape in both domesticated and wild low rainfall ecotypes. Species differences reflected their distribution. Small and soft-seeded, low vigor L. luteus had a late, rainfall-responsive phenology specifically adapted to long season environments, and a narrow coastal distribution. L. angustifolius was much more conservative; more hard-seeded, flowering and maturing much earlier, with a wide Mediterranean distribution. L. albus flowered earlier but matured much later, with longer reproductive phases supporting much larger seed sizes and early vigor than either L. luteus or L. angustifolius. This ruderal/competitive combination appears to give L. albus a broad adaptive capacity, reflected in its relatively wider Mediterranean/North African distribution.
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Affiliation(s)
- Jens D. Berger
- CSIRO Agriculture and FoodWembley WA, Australia
- Centre for Legumes in Mediterranean Agriculture, Faculty of Natural and Agricultural Sciences, University of Western AustraliaCrawley, WA, Australia
| | - Damber Shrestha
- Centre for Legumes in Mediterranean Agriculture, Faculty of Natural and Agricultural Sciences, University of Western AustraliaCrawley, WA, Australia
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Chang Y, Nguyen BH, Xie Y, Xiao B, Tang N, Zhu W, Mou T, Xiong L. Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice. FRONTIERS IN PLANT SCIENCE 2017; 8:1102. [PMID: 28694815 PMCID: PMC5483469 DOI: 10.3389/fpls.2017.01102] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 06/07/2017] [Indexed: 05/07/2023]
Abstract
Drought is one of the major abiotic stresses threatening rice (Oryza sativa) production worldwide. Drought resistance is controlled by multiple genes, and therefore, a multi-gene genetic engineering strategy is theoretically useful for improving drought resistance. However, the experimental evidence for such a strategy is still lacking. In this study, a few drought-responsive genes from rice were assembled by a multiple-round site-specific assembly system, and the constructs were introduced into the rice cultivar KY131 via Agrobacterium-mediated transformation. The transgenic lines of the multi-gene and corresponding single-gene constructs were pre-evaluated for drought resistance. We found that the co-overexpression of two genes, encoding a constitutively active form of a bZIP transcription factor (OsbZIP46CA1) and a protein kinase (SAPK6) involved in the abscisic acid signaling pathway, showed significantly enhanced drought resistance compared with the single-gene transgenic lines and the negative transgenic plants. Single-copy lines of this bi-gene combination (named XL22) and the corresponding single-gene lines were further evaluated for drought resistance in the field using agronomical traits. The results showed that XL22 exhibited greater yield, biomass, spikelet number, and grain number under moderate drought stress conditions. The seedling survival rate of XL22 and the single-gene overexpressors after drought stress treatment also supported the drought resistance results. Furthermore, expression profiling by RNA-Seq revealed that many genes involved in the stress response were specifically up-regulated in the drought-treated XL22 lines and some of the stress-related genes activated in CA1-OE and SAPK6-OE were distinct, which could partially explain the different performances of these lines with respect to drought resistance. In addition, the XL22 seedlings showed improved tolerance to heat and cold stresses. Our results demonstrate that the multi-gene assembly in an appropriate combination may be a promising approach in the genetic improvement of drought resistance.
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Affiliation(s)
- Yu Chang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
| | - Ba Hoanh Nguyen
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
- Institute of Natural Sciences Education, Vinh UniversityVinh, Vietnam
| | - Yongjun Xie
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
| | - Benze Xiao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
| | - Ning Tang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
| | - Wenliu Zhu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
| | - Tongmin Mou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
- *Correspondence: Lizhong Xiong, Tongmin Mou,
| | - Lizhong Xiong
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural UniversityWuhan, China
- *Correspondence: Lizhong Xiong, Tongmin Mou,
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