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Scarpa F, Sernicola L, Farcomeni S, Ciccozzi A, Sanna D, Casu M, Vitale M, Cicenia A, Giovanetti M, Romano C, Branda F, Ciccozzi M, Borsetti A. Phylodynamic and Evolution of the Hemagglutinin (HA) and Neuraminidase (NA) Genes of Influenza A(H1N1) pdm09 Viruses Circulating in the 2009 and 2023 Seasons in Italy. Pathogens 2024; 13:334. [PMID: 38668289 PMCID: PMC11054071 DOI: 10.3390/pathogens13040334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/12/2024] [Accepted: 04/15/2024] [Indexed: 04/29/2024] Open
Abstract
The influenza A(H1N1) pdm09 virus, which emerged in 2009, has been circulating seasonally since then. In this study, we conducted a comprehensive genome-based investigation to gain a detailed understanding of the genetic and evolutionary characteristics of the hemagglutinin (HA) and neuraminidase (NA) surface proteins of A/H1N1pdm09 strains circulating in Italy over a fourteen-year period from 2009 to 2023 in relation to global strains. Phylogenetic analysis revealed rapid transmission and diversification of viral variants during the early pandemic that clustered in clade 6B.1. In contrast, limited genetic diversity was observed during the 2023 season, probably due to the genetic drift, which provides the virus with a constant adaptability to the host; furthermore, all isolates were split into two main groups representing two clades, i.e., 6B.1A.5a.2a and its descendant 6B.1A.5a.2a.1. The HA gene showed a faster rate of evolution compared to the NA gene. Using FUBAR, we identified positively selected sites 41 and 177 for HA and 248, 286, and 455 for NA in 2009, as well as sites 22, 123, and 513 for HA and 339 for NA in 2023, all of which may be important sites related to the host immune response. Changes in glycosylation acquisition/loss at prominent sites, i.e., 177 in HA and 248 in NA, should be considered as a predictive tool for early warning signs of emerging pandemics, and for vaccine and drug development.
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Affiliation(s)
- Fabio Scarpa
- Department of Biomedical Sciences, University of Sassari, 07100 Sassari, Italy; (A.C.); (D.S.)
| | - Leonardo Sernicola
- National HIV/AIDS Research Center (CNAIDS), Istituto Superiore di Sanità, 00162 Rome, Italy; (L.S.); (S.F.)
| | - Stefania Farcomeni
- National HIV/AIDS Research Center (CNAIDS), Istituto Superiore di Sanità, 00162 Rome, Italy; (L.S.); (S.F.)
| | - Alessandra Ciccozzi
- Department of Biomedical Sciences, University of Sassari, 07100 Sassari, Italy; (A.C.); (D.S.)
| | - Daria Sanna
- Department of Biomedical Sciences, University of Sassari, 07100 Sassari, Italy; (A.C.); (D.S.)
| | - Marco Casu
- Department of Veterinary Medicine, University of Sassari, 07100 Sassari, Italy;
| | - Marco Vitale
- Laboratorio di Biologia Molecolare—Fondazione Università Niccolò Cusano, 00166 Rome, Italy; (M.V.); (A.C.)
| | - Alessia Cicenia
- Laboratorio di Biologia Molecolare—Fondazione Università Niccolò Cusano, 00166 Rome, Italy; (M.V.); (A.C.)
| | - Marta Giovanetti
- Department of Sciences and Technologies for Sustainable Development and One Health, Universita Campus Bio-Medico di Roma, 00128 Rome, Italy;
- Instituto René Rachou, Fundação Oswaldo Cruz, Belo Horizonte 30190-009, MG, Brazil
- Climate Amplified Diseases and Epidemics (CLIMADE), Brasilia 70070-130, DF, Brazil
| | - Chiara Romano
- Unit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, 00128 Rome, Italy; (C.R.); (F.B.); (M.C.)
| | - Francesco Branda
- Unit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, 00128 Rome, Italy; (C.R.); (F.B.); (M.C.)
| | - Massimo Ciccozzi
- Unit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, 00128 Rome, Italy; (C.R.); (F.B.); (M.C.)
| | - Alessandra Borsetti
- National HIV/AIDS Research Center (CNAIDS), Istituto Superiore di Sanità, 00162 Rome, Italy; (L.S.); (S.F.)
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Menegatt JCO, Perosa FF, Gris AH, Piva MM, Serena GC, Bordignon DL, Reck C, Menin Á, Watanabe TTN, Driemeier D. Main Causes of Death in Piglets from Different Brazilian Nursery Farms Based on Clinical, Microbiological, and Pathological Aspects. Animals (Basel) 2023; 13:3819. [PMID: 38136857 PMCID: PMC10740839 DOI: 10.3390/ani13243819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 12/05/2023] [Accepted: 12/09/2023] [Indexed: 12/24/2023] Open
Abstract
Necropsies can reveal herd problems or comorbidities that can lead to management corrections, improvements in animal performance, and better decision making. Furthermore, the pattern and causes of mortality might differ when different systems are evaluated. The present study was conducted to establish the main causes of death in nursery pigs from different systems in Brazil, as well as the clinical, microbiological, and pathological aspects of these mortalities. Eighteen nurseries were analyzed (a total of 120,243 housed piglets), and 557 necropsies were performed. Streptococcus suis infection was the most prevalent cause of death (21.2%), followed by bacterial polyserositis (16.7%), chronic atrophic enteritis (13.5%), salmonellosis (8.8%), pneumonia (8.6%), and colibacillosis (6.1%). The increase in mortality rate in individual nurseries and, consequently, in the diagnoses was commonly associated with disease outbreaks. Infectious diseases constituted the largest portion of the diagnoses, making a great opportunity for improving production rates in herds. Moreover, the extensive range of observed diagnoses highlights the importance of conducting preliminary diagnostic investigations based on necropsy to determine the causes of death. This approach allows for the direction of complementary tests, which can diagnose agents with greater specificity. As a result, this allows for the implementation of more effective prevention and control strategies.
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Affiliation(s)
- Jean Carlo Olivo Menegatt
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
| | - Fernanda Felicetti Perosa
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
| | - Anderson Hentz Gris
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
| | - Manoela Marchezan Piva
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
| | - Guilherme Carvalho Serena
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
| | - Diego Luiz Bordignon
- Cargill Alimentos Ltd.a., Av. José Bonifácio Coutinho Nogueira, 150, Campinas 13091-611, SP, Brazil;
| | - Carolina Reck
- VERTÀ Laboratórios, Instituto de Pesquisa e Diagnóstico Veterinário, Av. Lions, 1380—Nossa Senhora Aparecida, Curitibanos 89520-000, SC, Brazil; (C.R.); (Á.M.)
| | - Álvaro Menin
- VERTÀ Laboratórios, Instituto de Pesquisa e Diagnóstico Veterinário, Av. Lions, 1380—Nossa Senhora Aparecida, Curitibanos 89520-000, SC, Brazil; (C.R.); (Á.M.)
- Departamento de Biociências e Saúde Única, Universidade Federal de Santa Catarina, R. Germano A. Souza, Curitibanos 89520-000, SC, Brazil
| | - Tatiane Terumi Negrão Watanabe
- Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27606, USA;
- Antech Diagnostics, West Olympic Blvd, Los Angeles, CA 90064, USA
| | - David Driemeier
- Setor de Patologia Veterinária, Faculdade de Medicina Veterinária, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9090, Porto Alegre 91540-000, RS, Brazil; (F.F.P.); (A.H.G.); (M.M.P.); (G.C.S.); (D.D.)
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Ospina-Jimenez AF, Gomez AP, Rincon-Monroy MA, Ortiz L, Perez DR, Peña M, Ramirez-Nieto G. Sequence-Based Antigenic Analyses of H1 Swine Influenza A Viruses from Colombia (2008-2021) Reveals Temporal and Geographical Antigenic Variations. Viruses 2023; 15:2030. [PMID: 37896808 PMCID: PMC10612065 DOI: 10.3390/v15102030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 09/22/2023] [Accepted: 09/23/2023] [Indexed: 10/29/2023] Open
Abstract
Swine influenza is a respiratory disease that affects the pork industry and is a public health threat. It is caused by type A influenza virus (FLUAV), which continuously undergoes genetic and antigenic variations. A large amount of information regarding FLUAV in pigs is available worldwide, but it is limited in Latin America. The HA sequences of H1 subtype FLUAV-positive samples obtained from pigs in Colombia between 2008-2021 were analyzed using sequence-based antigenic cartography and N-Glycosylation analyses. Of the 12 predicted global antigenic groups, Colombia contained five: four corresponding to pandemic strains and one to the classical swine H1N1 clade. Circulation of these clusters was observed in some regions during specific years. Ca2 was the immunodominant epitope among Colombian viruses. The counts of N-Glycosylation motifs were associated with the antigenic cluster ranging from three to five. The results show for the first time the existence of antigenic diversity of FLUAV in Colombia and highlight the impact of spatial and temporal factors on this diversity. This study provides information about FLUAV variability in pigs under natural conditions in the absence of vaccination and emphasizes the need for surveillance of its phylogenetic and antigenic characteristics.
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Affiliation(s)
- Andres F. Ospina-Jimenez
- Grupo de Investigación en Microbiología y Epidemiología, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá 111321, Colombia; (A.F.O.-J.); (A.P.G.); (M.A.R.-M.)
| | - Arlen P. Gomez
- Grupo de Investigación en Microbiología y Epidemiología, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá 111321, Colombia; (A.F.O.-J.); (A.P.G.); (M.A.R.-M.)
| | - Maria A. Rincon-Monroy
- Grupo de Investigación en Microbiología y Epidemiología, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá 111321, Colombia; (A.F.O.-J.); (A.P.G.); (M.A.R.-M.)
- National Veterinary Diagnostics Laboratory, Colombian Agricultural Institute (ICA), Bogotá 110931, Colombia
| | - Lucia Ortiz
- Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA; (L.O.); (D.R.P.)
| | - Daniel R. Perez
- Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA; (L.O.); (D.R.P.)
| | - Mario Peña
- Asociación Colombiana de Porcicultores Porkcolombia—FNP, Bogotá 111311, Colombia;
| | - Gloria Ramirez-Nieto
- Grupo de Investigación en Microbiología y Epidemiología, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá 111321, Colombia; (A.F.O.-J.); (A.P.G.); (M.A.R.-M.)
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Junqueira DM, Tochetto C, Anderson TK, Gava D, Haach V, Cantão ME, Baker ALV, Schaefer R. Human-to-swine introductions and onward transmission of 2009 H1N1 pandemic influenza viruses in Brazil. Front Microbiol 2023; 14:1243567. [PMID: 37614592 PMCID: PMC10442540 DOI: 10.3389/fmicb.2023.1243567] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 07/27/2023] [Indexed: 08/25/2023] Open
Abstract
Introduction Once established in the human population, the 2009 H1N1 pandemic virus (H1N1pdm09) was repeatedly introduced into swine populations globally with subsequent onward transmission among pigs. Methods To identify and characterize human-to-swine H1N1pdm09 introductions in Brazil, we conducted a large-scale phylogenetic analysis of 4,141 H1pdm09 hemagglutinin (HA) and 3,227 N1pdm09 neuraminidase (NA) gene sequences isolated globally from humans and swine between 2009 and 2022. Results Phylodynamic analysis revealed that during the period between 2009 and 2011, there was a rapid transmission of the H1N1pdm09 virus from humans to swine in Brazil. Multiple introductions of the virus were observed, but most of them resulted in self-limited infections in swine, with limited onward transmission. Only a few sustained transmission clusters were identified during this period. After 2012, there was a reduction in the number of human-to-swine H1N1pdm09 transmissions in Brazil. Discussion The virus underwent continuous antigenic drift, and a balance was established between swine-to-swine transmission and extinction, with minimal sustained onward transmission from humans to swine. These results emphasize the dynamic interplay between human-to-swine transmission, antigenic drift, and the establishment of swine-to-swine transmission in shaping the evolution and persistence of H1N1pdm09 in swine populations.
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Affiliation(s)
- Dennis Maletich Junqueira
- Laboratório de Bioinformática e Evolução de Vírus, Departamento de Bioquímica e Biologia Molecular, Centro de Ciências Naturais e Exatas (CCNE), Universidade Federal de Santa Maria (UFSM), Santa Maria, Brazil
| | | | - Tavis K. Anderson
- Virus and Prion Research Unit, United States Department of Agriculture, National Animal Disease Center, Agricultural Research Service, Ames, IA, United States
| | | | - Vanessa Haach
- Laboratório de Virologia, Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | | | - Amy L. Vincent Baker
- Virus and Prion Research Unit, United States Department of Agriculture, National Animal Disease Center, Agricultural Research Service, Ames, IA, United States
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Jallow MM, Barry MA, Fall A, Ndiaye NK, Kiori D, Sy S, Goudiaby D, Niang MN, Fall G, Fall M, Dia N. Influenza A Virus in Pigs in Senegal and Risk Assessment of Avian Influenza Virus (AIV) Emergence and Transmission to Human. Microorganisms 2023; 11:1961. [PMID: 37630521 PMCID: PMC10459748 DOI: 10.3390/microorganisms11081961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 08/27/2023] Open
Abstract
We conducted an active influenza surveillance in the single pig slaughterhouse in Dakar to investigate the epidemiology and genetic characteristics of influenza A viruses (IAVs) and to provide serologic evidence of avian influenza virus (AIV) infection in pigs at interfaces with human populations in Senegal. Nasal swab and blood samples were collected on a weekly basis from the same animal immediately after slaughter. Influenza A viruses were diagnosed using RT-qPCR and a subset of positive samples for H3 and H1 subtypes were selected for full genome amplification and NGS sequencing. Serum samples were tested by HI assay for the detection of antibodies recognizing four AIVs, including H9N2, H5N1, H7N7 and H5N2. Between September 2018 and December 2019, 1691 swine nasal swabs were collected and tested. Influenza A virus was detected in 30.7% (520/1691), and A/H1N1pdm09 virus was the most commonly identified subtype with 38.07% (198/520), followed by A/H1N2 (16.3%) and A/H3N2 (5.2%). Year-round influenza activity was noted in pigs, with the highest incidence between June and September. Phylogenetic analyses revealed that the IAVs were closely related to human IAV strains belonging to A/H1N1pdm09 and seasonal H3N2 lineages. Genetic analysis revealed that Senegalese strains possessed several key amino acid changes, including D204 and N241D in the receptor binding site, S31N in the M2 gene and P560S in the PA protein. Serological analyses revealed that 83.5% (95%CI = 81.6-85.3) of the 1636 sera tested were positive for the presence of antibodies against either H9N2, H5N1, H7N7 or H5N2. Influenza H7N7 (54.3%) and H9N2 (53.6%) were the dominant avian subtypes detected in Senegalese pigs. Given the co-circulation of multiple subtypes of influenza viruses among Senegalese pigs, the potential exists for the emergence of new hybrid viruses of unpredictable zoonotic and pandemic potential in the future.
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Affiliation(s)
- Mamadou Malado Jallow
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
- Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta DIOP de Dakar, Dakar BP 206, Senegal;
| | - Mamadou Aliou Barry
- Institut Pasteur de Dakar, Unité d’Epidémiologie des Maladies Infectieuses, Dakar BP 220, Senegal;
| | - Amary Fall
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Ndiendé Koba Ndiaye
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Davy Kiori
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Sara Sy
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Déborah Goudiaby
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Mbayame Ndiaye Niang
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Gamou Fall
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
| | - Malick Fall
- Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta DIOP de Dakar, Dakar BP 206, Senegal;
| | - Ndongo Dia
- Institut Pasteur de Dakar, Département de Virologie, Dakar BP 220, Senegal; (M.M.J.); (A.F.); (N.K.N.); (D.K.); (S.S.); (D.G.); (M.N.N.); (G.F.)
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Introductions of Human-Origin Seasonal H3N2, H1N2 and Pre-2009 H1N1 Influenza Viruses to Swine in Brazil. Viruses 2023; 15:v15020576. [PMID: 36851790 PMCID: PMC9966956 DOI: 10.3390/v15020576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 02/13/2023] [Accepted: 02/16/2023] [Indexed: 02/22/2023] Open
Abstract
In South America, the evolutionary history of influenza A virus (IAV) in swine has been obscured by historically low levels of surveillance, and this has hampered the assessment of the zoonotic risk of emerging viruses. The extensive genetic diversity of IAV in swine observed globally has been attributed mainly to bidirectional transmission between humans and pigs. We conducted surveillance in swine in Brazil during 2011-2020 and characterized 107 H1N1, H1N2, and H3N2 IAVs. Phylogenetic analysis based on HA and NA segments revealed that human seasonal IAVs were introduced at least eight times into swine in Brazil since the mid-late 1980s. Our analyses revealed three genetic clades of H1 within the 1B lineage originated from three distinct spillover events, and an H3 lineage that has diversified into three genetic clades. The N2 segment from human seasonal H1N2 and H3N2 viruses was introduced into swine six times and a single introduction of an N1 segment from the human H1N1 virus was identified. Additional analysis revealed further reassortment with H1N1pdm09 viruses. All these introductions resulted in IAVs that apparently circulate only in Brazilian herds. These results reinforce the significant contributions of human IAVs to the genetic diversity of IAV in swine and reiterate the importance of surveillance of IAV in pigs.
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Balestrin E, Wolf JM, Wolf LM, Fonseca ASK, Ikuta N, Siqueira FM, Lunge VR. Molecular detection of respiratory coinfections in pig herds with enzootic pneumonia: a survey in Brazil. J Vet Diagn Invest 2022; 34:310-313. [PMID: 35034523 PMCID: PMC8921818 DOI: 10.1177/10406387211069552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Mycoplasma hyopneumoniae is the primary etiologic agent of swine enzootic pneumonia (EP), in which the immune response is reduced, making pigs susceptible to secondary infections. We surveyed commercial pig herds in Brazil for viral and bacterial respiratory coinfections that could complicate EP. Over a 2-y period (2015-2016), we found that 854 of 2,206 pigs (38.7%) were positive for M. hyopneumoniae in herds from various production systems in 3 Brazilian regions (Central-West, Southeast, South). We collected samples of 321 lungs positive for M. hyopneumoniae from 169 farms to also screen for Pasteurella multocida, Actinobacillus pleuropneumoniae, Glaesserella parasuis, influenza A virus (IAV), and porcine circovirus 2 (PCV2) by real-time PCR. The prevalence of pathogens found in addition to M. hyopneumoniae varied: P. multocida (141; 43.9%), G. parasuis (71; 22.1%), PCV2 (50; 15.6%), IAV (23; 7.2%), and A. pleuropneumoniae (18; 5.6%). G. parasuis was more frequent in farrowing or nursery herds (48.7%) than in breeding and fattening herds (10% and 18.6%, respectively; p < 0.01); A. pleuropneumoniae was found only in herds on farrow-to-finish and fattening farms.
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Affiliation(s)
- Eder Balestrin
- Laboratory of Molecular Diagnostic, Universidade Luterana do Brasil (ULBRA), Canoas, Rio Grande do Sul, Brazil
| | - Jonas M. Wolf
- Laboratory of Molecular Diagnostic, Universidade Luterana do Brasil (ULBRA), Canoas, Rio Grande do Sul, Brazil
| | - Lucas M. Wolf
- Laboratory of Molecular Diagnostic, Universidade Luterana do Brasil (ULBRA), Canoas, Rio Grande do Sul, Brazil
| | | | - Nilo Ikuta
- Simbios Biotecnologia, Cachoeirinha, Rio Grande do Sul, Brazil
| | - Franciele M. Siqueira
- Laboratory of Veterinary Bacteriology, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul, Brazil
| | - Vagner R. Lunge
- Vagner R. Lunge, Laboratório de Diagnóstico Molecular, Universidade Luterana do Brasil (ULBRA), Canoas, RS, 92425-900, Brazil.
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Swine influenza A virus subtypes circulating in Brazilian commercial pig herds from 2012 to 2019. Braz J Microbiol 2021; 52:2421-2430. [PMID: 34455547 PMCID: PMC8402972 DOI: 10.1007/s42770-021-00550-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 06/21/2021] [Indexed: 12/05/2022] Open
Abstract
The swine influenza A virus (SIAV) subtypes/lineages H1N1pdm09, H3N2, H1N2, and H1N1 of seasonal human origin are widespread in Brazilian swine herds. A monovalent inactivated H1N1pdm09 vaccine was licensed in Brazil in 2014. However, there are concerns about its efficacy due to the limited vaccine cross-protection against heterologous viruses and the potential for exacerbated reactions against vaccine strains. Thus, monitoring SIAVs subtypes/lineages that are circulating in the Brazilian swine population is important, by applying a fast and efficient diagnostic test in herd field samples. A RT-PCR assay was developed, using primers specific for HA subtyping of Brazilian SIAV, and was used to evaluate the occurrence of subtypes from samples collected between 2012 and 2019. From 167 field samples positive for influenza A, 117 were subtyped by nested RT-PCR assay. A higher occurrence of H1N1pdm was observed from 2012 to 2015, H3N2 in 2017, and H1hu in 2017 to 2019. A hemagglutination inhibition test was performed in serum samples received from 2017 to 2019, confirming these data. The molecular data highlights the importance of H1hu and H3N2 detection since there are no vaccines available for the subtypes/lineages and raises an alert of H1hu for its potential to infect humans. Serological data suggest a cyclical profile of occurrence between the H3N2 and H1N1pdm over time. Monitoring SIAVs circulating in Brazilian swine herds is necessary, which provides the relevant information for field veterinarians to apply effective control measures on the properties.
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Senthilkumar D, Kulkarni DD, Venkatesh G, Gupta V, Patel P, Dixit M, Singh B, Bhatia S, Tosh C, Dubey SC, Singh VP. Widespread Prevalence of Antibodies Against Swine Influenza A (pdm H1N1 09) Virus in Pigs of Eastern Uttar Pradesh, India. Curr Microbiol 2021; 78:2753-2761. [PMID: 34037823 PMCID: PMC8150629 DOI: 10.1007/s00284-021-02520-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 04/26/2021] [Indexed: 10/25/2022]
Abstract
Swine influenza virus (SIV) belongs to family Orthomyxoviridae and can cause acute respiratory infection in pigs. Several pandemic H1N1 human fatal influenza cases were reported in India. Though pigs are predisposed to both avian and human influenza virus infections with the potential to generate novel reassortants, there are only a few reports of SIV in Indian pigs. We conducted a serological survey to assess the status of H1N1 infection in pigs of various states in India, between 2009 and 2016. Based on Haemagglutination inhibition (HI) assay, seroprevalence rate of H1N1 virus ranged between 5.2% (2009) and 36.3% (2011). Widespread prevalence of antibody was observed in eastern Uttar Pradesh from 6.2 to 37.5% during the study period. Co-circulation of seasonal H1N1 virus along with pandemic H1N1 virus was indicated by the presence of specific antibodies against seasonal H1N1 virus in eastern part of Uttar Pradesh. Seroprevalence rate in pigs and influenza infection trend in human shows the possible spill over transmission of influenza to pigs from human. Hence, besides serological surveillance, continuous and systematic molecular surveillance should be implemented in pig population to reduce/quantify the risk and emergence of pandemic influenza.
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Affiliation(s)
- Dhanapal Senthilkumar
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India.
| | - Diwakar D Kulkarni
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Govindarajulu Venkatesh
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Vandana Gupta
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Priyanka Patel
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Manu Dixit
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Bharti Singh
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Sandeep Bhatia
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Chakradhar Tosh
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Shiv Chandra Dubey
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
| | - Vijendra Pal Singh
- ICAR-National Institute of High Security Animal Diseases, Anand Nagar, Bhopal, Madhya Pradesh, India
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10
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Herd-level factors associated with non-productive days and farrowing rate in commercial pig farms in two consecutive years. Livest Sci 2021. [DOI: 10.1016/j.livsci.2020.104312] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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11
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Severo DRT, Werlang RA, Mori AP, Baldi KRA, Mendes RE, Surian SRS, Coldebella A, Kramer B, Trevisol IM, Gomes TMA, Silva VS. Health profile of free-range wild boar (Sus scrofa) subpopulations hunted in Santa Catarina State, Brazil. Transbound Emerg Dis 2020; 68:857-869. [PMID: 32725949 DOI: 10.1111/tbed.13752] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 06/13/2020] [Accepted: 07/18/2020] [Indexed: 02/01/2023]
Abstract
Wild boars represent a potential dissemination source of important pathogens to public and animal health, since they can host several pathogens. This study aimed to evaluate the health profile of wild boars hunted for population control in the state of Santa Catarina (SC), south of Brazil. For this study, tissue and blood samples were collected from 61 wild boars hunted from October 2017 to November 2018. All 61 serum samples were screened for antibodies by different assays, presenting the following seroprevalence: 52.4% for porcine circovirus type 2 (PCV2); 21.3% for Leptospira spp.; 19.7% for Mycoplasma hyopneumoniae; 13.1% for hepatitis E virus (HEV); and 9.8% for influenza A virus (IAV). No seroreaction was observed for Brucella spp. and classical swine fever virus (CSFV). At necropsy, the main lesions observed were evidence of pulmonary metastrongylid parasites, haemorrhagic lymph nodes and white-spotted liver. Histopathological analyses mainly showed interstitial pneumonia, bronchopneumonia and bronchi-associated lymphoid tissue (BALT) hyperplasia. There was a significant association between metastrongylid parasitism and BALT hyperplasia in lungs. Pathological findings of wild boars indicate that the assessed individuals were not exposed to notifiable diseases, such as CSFV, African swine fever virus and foot-and-mouth disease, which cause economic damage by non-tariff trade barriers. However, the detection of antibodies against PCV2 and M. hyopneumoniae, pathogens that impact commercial production, indicates the circulation of these agents, with frequency variation in wild populations. This shows the potential risk of pathogen transmission among domestic swine populations and free-living ones. The detection of antibodies against zoonotic agents such as HEV, IAV and Leptospira spp., other than characterizing the pathogens' circulation in these populations, suggests a potential risk to public health and pig farming, depending on the interactions established with the environment, humans and domestic swine.
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Affiliation(s)
- Diego Rodrigo Torres Severo
- Companhia Integrada de Desenvolvimento Agrícola de Santa Catarina (CIDASC), Florianópolis, Brazil.,Faculdade de Veterinária, Instituto Federal Catarinense (IFC) - Campus Concórdia, Concórdia, Brazil
| | - Rafael André Werlang
- Faculdade de Veterinária, Instituto Federal Catarinense (IFC) - Campus Concórdia, Concórdia, Brazil
| | - Ana Paula Mori
- Faculdade de Veterinária, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | | | - Ricardo Evandro Mendes
- Faculdade de Veterinária, Instituto Federal Catarinense (IFC) - Campus Concórdia, Concórdia, Brazil
| | | | - Arlei Coldebella
- Empresa Brasileira de Pesquisa Agropecuária (Embrapa) Suínos e Aves, Concórdia, Brazil
| | - Beatris Kramer
- Empresa Brasileira de Pesquisa Agropecuária (Embrapa) Suínos e Aves, Concórdia, Brazil
| | - Iara Maria Trevisol
- Empresa Brasileira de Pesquisa Agropecuária (Embrapa) Suínos e Aves, Concórdia, Brazil
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12
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Chauhan RP, Gordon ML. A Systematic Review Analyzing the Prevalence and Circulation of Influenza Viruses in Swine Population Worldwide. Pathogens 2020; 9:pathogens9050355. [PMID: 32397138 PMCID: PMC7281378 DOI: 10.3390/pathogens9050355] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 04/02/2020] [Accepted: 04/09/2020] [Indexed: 01/04/2023] Open
Abstract
The global anxiety and a significant threat to public health due to the current COVID-19 pandemic reiterate the need for active surveillance for the zoonotic virus diseases of pandemic potential. Influenza virus due to its wide host range and zoonotic potential poses such a significant threat to public health. Swine serve as a “mixing vessel” for influenza virus reassortment and evolution which as a result may facilitate the emergence of new strains or subtypes of zoonotic potential. In this context, the currently available scientific data hold a high significance to unravel influenza virus epidemiology and evolution. With this objective, the current systematic review summarizes the original research articles and case reports of all the four types of influenza viruses reported in swine populations worldwide. A total of 281 articles were found eligible through screening of PubMed and Google Scholar databases and hence were included in this systematic review. The highest number of research articles (n = 107) were reported from Asia, followed by Americas (n = 97), Europe (n = 55), Africa (n = 18), and Australia (n = 4). The H1N1, H1N2, H3N2, and A(H1N1)pdm09 viruses were the most common influenza A virus subtypes reported in swine in most countries across the globe, however, few strains of influenza B, C, and D viruses were also reported in certain countries. Multiple reports of the avian influenza virus strains documented in the last two decades in swine in China, the United States, Canada, South Korea, Nigeria, and Egypt provided the evidence of interspecies transmission of influenza viruses from birds to swine. Inter-species transmission of equine influenza virus H3N8 from horse to swine in China expanded the genetic diversity of swine influenza viruses. Additionally, numerous reports of the double and triple-reassortant strains which emerged due to reassortments among avian, human, and swine strains within swine further increased the genetic diversity of swine influenza viruses. These findings are alarming hence active surveillance should be in place to prevent future influenza pandemics.
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13
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Galdeano JVB, Baraldi TG, Ferraz MES, de Souza Almeida HM, Mechler-Dreibi ML, Costa WMT, Montassier HJ, Mathias LA, de Oliveira LG. Cross-sectional study of seropositivity, lung lesions and associated risk factors of the main pathogens of Porcine Respiratory Diseases Complex (PRDC) in Goiás, Brazil. Porcine Health Manag 2019; 5:23. [PMID: 31636919 PMCID: PMC6791015 DOI: 10.1186/s40813-019-0130-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 09/30/2019] [Indexed: 11/10/2022] Open
Abstract
Background The objective of the study was to evaluate the occurrence and severity of Porcine Respiratory Diseases Complex (PRDC) pathogens in the Goiás State, Brazil. Were assessed the serological antibodies occurrency of Mycoplasma hyopneumoniae, Actinobacillus pleuropneumoniae and swine influenza virus (SIV), as well as the evaluation of pulmonary Mycoplasma-like lung lesions, pleuritis, histopathological lesions and diseases occurrence associated with risk factors, such as management, housing and productive indexes. We conveniently selected 2536 animals for serology testing, and 900 lungs at slaughtering of animals from 30 multisite herds in Goiás State, Brazil. Results For M. hyopneumoniae, all herds presented seropositive animals at some stage of production. Even though most herds (29/30) vaccinated against this pathogen, 90.0% (27/30) of the herds presented at least 50.0% of seropositive animals in finishing and slaughter. Overall, antibodies against A. pleuropneumoniae were present in lower occurrence, varying from 22.4% of the animals in the nursery phase to 1.3% of the animals at slaughter. Conversely, SIV circulated in most herds, with 29 seropositive herds without vaccination. The occurrence of anti-SIV antibodies was higher at slaughter (74.5% of the animals) than nursery (41.8% of the animals), and at slaughter, 23 herds (76.7%) presented at least 50.0% of seropositive animals. All herds presented animals with pulmonary Mycoplasma-like lung lesions, and of the 900 lungs evaluated in the slaughterhouse, 665 (73.9%) presented an average Mycoplasma-like lung lesions of 7.3%. Evaluations of the pneumonia index (PI) showed that 73.3% of the herds were strongly affected by a pathology that manifested itself in different presentation forms. Microscopically, there was a predominance of bronchopneumonia lesions (74.6% of affected lungs), with a high occurrence of the chronic form (57.1%), and there was a moderate to marked proliferation of bronchial associated lymphoid tissue (BALT) in 64.1% of the affected lungs. Pleuritis were observed in 13.5% of the animals. Conclusion Serological tests evidenced that antibodies against App and SIV were present in the Goiás State herds, and high occurrence of M. hyopneumoniae antibodies in finishing phases and slaughter may be influenced by pathogen circulation in vaccinated herds, leading to respiratory lesions at slaughter. Additionally, swine influenza virus was broadly disseminated in technified herds in Goiás State.
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Affiliation(s)
- José Vanderlei Burim Galdeano
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil.,COMIGO - Cooperativa Agroindustrial dos Produtores Rurais do Sudoeste Goiano, Rio Verde, GO Brazil
| | - Thaís Gasparini Baraldi
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil
| | | | | | - Marina Lopes Mechler-Dreibi
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil
| | | | - Hélio José Montassier
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil
| | - Luis Antonio Mathias
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil
| | - Luís Guilherme de Oliveira
- 1School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, SP Brazil
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14
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Baraldi TG, Cruz NRN, Pereira DA, Galdeano JVB, Gatto IRH, Silva AFD, Panzardi A, Linhares DCL, Mathias LA, de Oliveira LG. Antibodies against Actinobacillus pleuropneumoniae, Mycoplasma hyopneumoniae and influenza virus and their relationships with risk factors, clinical signs and lung lesions in pig farms with one-site production systems in Brazil. Prev Vet Med 2019; 171:104748. [PMID: 31470290 DOI: 10.1016/j.prevetmed.2019.104748] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 08/04/2019] [Accepted: 08/18/2019] [Indexed: 10/26/2022]
Abstract
A study was conducted on 21 pig herds using one-site production system in the southeast region of Brazil to assess the relationships among serological results for primary pathogens involved in respiratory diseases (Actinobacillus pleuropneumoniae, App; Mycoplasma hyopneumoniae, Mhyo; and swine influenza virus, SIV), cough index, pneumonia index, pleuritis and herd characteristics. The prevalence of antibodies against Mhyo and SIV increased throughout the raising phases, with the highest prevalence in slaughtered pigs (> 40%), while pigs in 65% (14/21) of nurseries demonstrated marked seroprevalence of App that decreased until the day of slaughter. Pleuritis and pulmonary consolidations were recorded in 9.0 and 72.4%, respectively, of the 908 evaluated lungs. Histopathological analysis of the lung lesions revealed suppurative bronchopneumonia in almost half of the lungs (48.9%). Regression analyses were conducted to identify risk factors associated with the cough index; pleuritis; pulmonary consolidation; and App, Mhyo and SIV serological results. All-in-all-out management in nursery buildings reduced the seroprevalence of Mhyo in herds. App seroprevalence was associated with pleuritis, and the presence of cough episodes in growing pigs was associated with SIV seropositivity in nursery pigs.
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Affiliation(s)
- T G Baraldi
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | - N R N Cruz
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | - D A Pereira
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | - J V B Galdeano
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | - I R H Gatto
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | | | | | - D C L Linhares
- Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States
| | - L A Mathias
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil
| | - L G de Oliveira
- School of Agricultural and Veterinarian Sciences, São Paulo State University (Unesp), Jaboticabal, São Paulo, Brazil.
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15
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Serafini Poeta Silva AP, de Freitas Costa E, Sousa E Silva G, Souza CK, Schaefer R, da Silva Vaz I, Corbellini LG. Biosecurity practices associated with influenza A virus seroprevalence in sows from southern Brazilian breeding herds. Prev Vet Med 2019; 166:1-7. [PMID: 30935500 DOI: 10.1016/j.prevetmed.2019.02.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 02/24/2019] [Accepted: 02/25/2019] [Indexed: 10/27/2022]
Abstract
Influenza A virus (IAV) infection is a recognized cause of acute respiratory disease in pigs that can culminate in the decline of performance due to increasing feed conversion and costs of antimicrobial drugs to control secondary infections. Biosecurity practices are the key to prevent transmission of highly contagious agents. The aim of this study was to assess the effect of biosecurity practices on IAV seroprevalence through a cross-sectional study carried out in 404 sows from 21 herds. An indirect ELISA was used to detect antibodies against a nucleoprotein of IAV. To evaluate IAV subtypes (H1N1pdm09, H1N2 and H3N2), all samples positive by ELISA were tested using the hemagglutination inhibition assay (HI). Prevalence ratios (PR) estimates were calculated using multivariate Poisson regression accounted with survey weights. Sixty-four percent (261/404) of sows were positive in the rNP-ELISA and the estimated prevalence was 63.9% (95% CI 55%-73%). All farms had at least one seropositive sow; the frequency of IAV subtypes found in seropositive sows was 51.9% for H1N1pdm09, 38.1% for codetection H1N1pdm09 and H1N2, 8.6% for H1N2, and 0.6% for codetection H1N1pdm09 and H3N2, and 19 herds presented coinfection of H1N1 pdm09 and H1N2. Variables significantly associated with IAV seroprevalence found in the final model were 'bird-proof net' (PR = 0.75; 95% CI: 0.65-0.86) and 'gilt acclimatization unit' (PR = 0.57, 95% CI: 0.50-0.66), showing a protective effect against IAV seroprevalence, and 'external replacement', which had a positive effect on IAV seroprevalence (PR = 1.38, 95% CI: 1.17-1.64). This study suggests that preventing contact among wild species and swine and using an adaptation area for animals before entry into the herd can be strategies to control the influenza virus in breeding herds.
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Affiliation(s)
- Ana Paula Serafini Poeta Silva
- Laboratório de Epidemiologia Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Eduardo de Freitas Costa
- Laboratório de Epidemiologia Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Gustavo Sousa E Silva
- Laboratório de Epidemiologia Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Carine Kunzler Souza
- Laboratório de Virologia, Faculdade de Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | | | - Itabajara da Silva Vaz
- Faculdade de Veterinária e Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Luís Gustavo Corbellini
- Laboratório de Epidemiologia Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil.
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16
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Souza CK, Oldiges DP, Poeta APS, Vaz IDS, Schaefer R, Gava D, Ciacci-Zanella JR, Canal CW, Corbellini LG. Serological surveillance and factors associated with influenza A virus in backyard pigs in Southern Brazil. Zoonoses Public Health 2018; 66:125-132. [PMID: 30485723 DOI: 10.1111/zph.12542] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 10/26/2018] [Accepted: 11/03/2018] [Indexed: 11/27/2022]
Abstract
Backyard pig populations are not monitored for influenza A virus (IAV) in Brazil and there are limited data about seroprevalence and risk factors in these populations. Our goal was to assess possible factors associated with IAV seroprevalence in backyard pig populations using an indirect ELISA protocol based on a recombinant nucleoprotein. Following the IAV screening using NP-ELISA, subtype-specific serology based on hemagglutination inhibition (HI) assay of the ELISA-positive pigs was conducted. The survey comprised a total of 1,667 sera samples collected in 2012 and 2014 in 479 holdings and the estimated seroprevalence was 5.3% (3.84%-7.33%) and 2.3% (1.34%-3.71%) in the respective years. In both years, H1N1pdm09 was the most prevalent subtype. The multivariable analysis showed main factors such as "age," "sex," "number of suckling pigs" and "neighbours raising pigs" that presented the greatest effect on IAV seroprevalence in these pig populations. These factors may be associated with the low biosecurity measures and management of backyard holdings. In addition, the low IAV seroprevalences found in these backyard pig populations could be related to a low number of animals in each pig holding and low animal movement/replacement that do not favour IAV transmission dynamics. This low frequency of H1N1pdm09 seropositive pigs could also be due to sporadic human-to-pig transmission of what is now a human seasonal influenza A virus; however, these factors should be explored in future studies. Herein, these results highlight the importance of IAV continued surveillance in backyard pig holdings, since it is poorly known which IAVs are circulating in these populations and the risk they could pose to public health and virus transmission to commercial farms.
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Affiliation(s)
- Carine K Souza
- Laboratório de Virologia, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Daiane P Oldiges
- Laboratório de Imunologia Aplicada à Sanidade Animal, Centro de Biotecnologia, UFRGS, Porto Alegre, Brazil
| | - Ana Paula S Poeta
- Laboratório de Medicina Veterinária Preventiva, Faculdade de Veterinária, UFRGS, Porto Alegre, Brazil
| | - Itabajara da S Vaz
- Laboratório de Imunologia Aplicada à Sanidade Animal, Centro de Biotecnologia, UFRGS, Porto Alegre, Brazil
| | | | | | | | - Cláudio W Canal
- Laboratório de Virologia, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Luís G Corbellini
- Laboratório de Medicina Veterinária Preventiva, Faculdade de Veterinária, UFRGS, Porto Alegre, Brazil
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17
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Almeida MN, Zimmerman JJ, Wang C, Linhares DCL. Assessment of abattoir based monitoring of PRRSV using oral fluids. Prev Vet Med 2018; 158:137-145. [PMID: 30220387 DOI: 10.1016/j.prevetmed.2018.08.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 07/12/2018] [Accepted: 08/07/2018] [Indexed: 02/06/2023]
Abstract
Various porcine reproductive and respiratory syndrome virus (PRRSV) regional elimination projects have been implemented in the U.S., but none have yet succeeded. In part, this reflects the need for efficient methods to monitor over time the progress of PRRSV status of participating herds. This study assessed the feasibility of monitoring PRRSV using oral fluids collected at the abattoir. A total of 36 pig lots were included in the study. On-farm oral fluid (n = 10) and serum (n = 10) collected within two days of shipment to the abattoir were used to establish the reference PRRSV status of the population. Oral fluids (n = 3 per lot) were successfully collected from 32 lots (89%) at the lairage. Three veterinary diagnostic laboratories (VDLs) tested the sera (VDL1 and VDL3: n = 316, VDL2: n = 315) and oral fluids (VDL1 and VDL3: n = 319, VDL2: n = 320) for PRRSV antibodies (ELISA) and RNA (rRT-PCR). Environmental samples (n = 64, 32 before and 32 after pigs were placed in lairage) were tested for PRRSV RNA at one VDL. All oral fluids (farm and abattoir) tested positive for PRRSV antibody at all VDLs. PRRSV positivity frequency on serum ranged from 92.4% to 94.6% among VDLs, with an overall agreement of 97.6%. RNA was detected on 1.3% to 1.9%, 8.1% to 17.7%, and 8.3% to 17.7% of sera, on-farm and abattoir oral fluids, respectively. Between-VDLs rRT-PCR agreement on sera and oral fluids (farm and abattoir) ranged from 97.8% to 99.0%, and 79.0% to 81.2%, respectively. Between-locations agreement of oral fluids varied from 31.3% to 50% depending on the VDL. This study reported the application of swine oral fluids collected at the abattoir for monitoring PRRSV, and describes the between-VDL agreement for PRRS testing of serum and oral fluid field samples.
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Affiliation(s)
- M N Almeida
- Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States
| | - J J Zimmerman
- Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States
| | - C Wang
- Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States
| | - D C L Linhares
- Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States.
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18
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Haach V, Gava D, Coldebella A, Schaefer R. INFLUÊNCIA DAS CONDIÇÕES DE ARMAZENAMENTO DO VÍRUS INFLUENZA NA DETECÇÃO POR RT-qPCR E ISOLAMENTO VIRAL. CIÊNCIA ANIMAL BRASILEIRA 2018. [DOI: 10.1590/1809-6891v19e-46789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Resumo A infecção de suínos pelo vírus influenza causa perdas significativas na suinocultura e a doença tem implicações consideráveis para a saúde pública. Dessa forma, a rápida detecção viral em amostras biológicas de suínos é importante para a vigilância da influenza. Para o diagnóstico, as condições de manutenção das amostras biológicas (modo de acondicionamento, temperatura e período de acondicionamento), desde a colheita das amostras de suínos até o envio ao laboratório, podem interferir negativamente na detecção viral. Neste estudo foi analisada a viabilidade de uma amostra do vírus influenza A H1N1/2009 isolada de suínos, mantida em diferentes modos de acondicionamento (meio comercial UTM, meio in house VTM e sem meio de manutenção) e diferentes temperaturas (4, 23 e 37 °C) por um período de até 120 horas. As amostras foram avaliadas por RT-qPCR e isolamento em ovos embrionados. Foram observados efeitos significativos (p<0,05) para o modo e período de acondicionamento e da interação entre esses dois fatores com a carga viral. Dessa forma, as amostras biológicas enviadas para diagnóstico de influenza devem ser armazenadas, preferencialmente, em meio de manutenção viral a 4 °C e o tempo decorrido entre a colheita da amostra e a chegada ao laboratório deve ser de, no máximo, três dias.
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19
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Production and application of anti-nucleoprotein IgY antibodies for influenza A virus detection in swine. J Immunol Methods 2018; 461:100-105. [PMID: 30158073 DOI: 10.1016/j.jim.2018.06.023] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 05/16/2018] [Accepted: 06/29/2018] [Indexed: 02/06/2023]
Abstract
Influenza A virus (IAV) causes an important respiratory disease in mammals and birds leading to concerns in animal production industry and public health. Usually, antibodies produced in mammals are employed in diagnostic tests. However, due to animal welfare concerns, technical advantages and the high cost of production, alternatives to the production of antibodies in mammals have been investigated. The aim of this study was to produce egg yolk immunoglobulin (IgY) in laying hens against a highly conserved protein (nucleoprotein- NP) of IAV and to evaluate the application of anti-NP IgY antibodies in virus detection by immunocytochemistry (ICC) and immunohistochemistry (IHC). Three laying hens of the White Leghorn line were inoculated seven times with a recombinant NP protein and their eggs collected seven days after the 3rd, 5th and 7th inoculations. Immunoglobulin Y antibodies were purified from egg yolk through precipitation with ammonium sulfate. The titers and specificity of the purified antibodies were determined by ELISA, western blotting, ICC and IHC. High levels of specific anti-NP antibodies were detected by ELISA after the 5th inoculation, reaching a peak after the 7th inoculation. The mean yield of total protein in yolk after the 7th inoculation was 13.5 mg/mL. The use of western blotting and ICC demonstrated that anti-NP IgY binds specifically to NP protein. Moreover, the use of anti-NP IgY antibody in ICC test revealed positive staining of MDCK cells infected with IAV of the three subtypes circulating in swine (H1N1, H1N2, and H3N2). However, no staining was observed in lung tissues through the IHC test. The data obtained showed that anti-NP IgY antibodies bound specifically to influenza virus NP protein, detecting the main virus subtypes circulating in swine, reinforcing their usefulness in the influenza diagnosis.
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Rech RR, Gava D, Silva MC, Fernandes LT, Haach V, Ciacci-Zanella JR, Schaefer R. Porcine respiratory disease complex after the introduction of H1N1/2009 influenza virus in Brazil. Zoonoses Public Health 2017; 65:e155-e161. [DOI: 10.1111/zph.12424] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Indexed: 02/03/2023]
Affiliation(s)
- R. R. Rech
- Department of Veterinary Pathobiology; College of Veterinary Medicine and Biomedical Sciences; Texas A&M University; College Station TX USA
| | - D. Gava
- Embrapa Suínos e Aves; Concórdia SC Brazil
| | - M. C. Silva
- Qualem Laboratorio Veterinário; Santa Maria RS Brazil
| | | | - V. Haach
- Departamento de Microbiologia, Imunologia e Parasitologia; Instituto de Ciências Básicas da Saúde; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
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21
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Camino Feltes MM, Arisseto-Bragotto AP, Block JM. Food quality, food-borne diseases, and food safety in the Brazilian food industry. FOOD QUALITY AND SAFETY 2017. [DOI: 10.1093/fqs/fyx003] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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22
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Biernacka K, Karbowiak P, Wróbel P, Charęza T, Czopowicz M, Balka G, Goodell C, Rauh R, Stadejek T. Detection of porcine reproductive and respiratory syndrome virus (PRRSV) and influenza A virus (IAV) in oral fluid of pigs. Res Vet Sci 2016; 109:74-80. [PMID: 27892877 DOI: 10.1016/j.rvsc.2016.09.014] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 09/15/2016] [Accepted: 09/20/2016] [Indexed: 11/28/2022]
Abstract
Recently oral fluid has become a novel sample type for pathogen nucleic acid and antibody detection, as it is easy to obtain with non-invasive procedures. The objective of the study was to analyze porcine reproductive and respiratory syndrome virus (PRRSV) and influenza A virus (IAV) circulation in growing pigs from three Polish production farms, using Real Time PCR and ELISA testing of oral fluid and serum. Oral fluids were collected every 2weeks, in the same 3-4 pens of pigs aged between 5 and 17weeks. Additionally, blood samples were collected every 4weeks from 4 pigs corresponding to the same pens as oral fluid and tested for the presence of PRRSV nucleic acid (pooled by 4) and antibodies. In farm A no PRRSV circulation was detected and only maternal antibodies were present. In farm B and farm C antibodies to PRRSV in serum and oral fluid were detected in most samples. In farm B PRRSV Type 1 was detected in 80.9% of oral fluid samples and in 58.3% of serum pools, and in farm C in 92.8% of oral fluid samples and 75% serum pools. Striking differences were observed between different pens in PRRSV detection patterns. In farms B and C ORF5 sequence analysis showed the presence of wild type strains which were about 84-85% identical to the modified live vaccine used. In all three farms two waves of IAV shedding with oral fluid were detected, in weaners and fatteners.
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Affiliation(s)
- Kinga Biernacka
- Warsaw University of Life Sciences - SGGW, Faculty of Veterinary Medicine, Department of Pathology and Veterinary Diagnostics, Nowoursynowska 159c, 02-776 Warsaw, Poland
| | | | - Paweł Wróbel
- Swine Vet Consulting L.L.C., Bolewskiego 40, 63-700 Krotoszyn, Poland
| | | | - Michał Czopowicz
- Warsaw University of Life Sciences - SGGW, Faculty of Veterinary Medicine, Laboratory of Veterinary Epidemiology and Economics, Nowoursynowska 159c, 02-776 Warsaw, Poland
| | - Gyula Balka
- University of Veterinary Medicine, Department of Pathology, István u. 2, H-1078 Budapest, Hungary
| | | | - Rolf Rauh
- Tetracore Inc, 9901 Belward Campus Drive Suite 300, Rockville, MD 20850, USA
| | - Tomasz Stadejek
- Warsaw University of Life Sciences - SGGW, Faculty of Veterinary Medicine, Department of Pathology and Veterinary Diagnostics, Nowoursynowska 159c, 02-776 Warsaw, Poland.
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Almeida HMDS, Storino GY, Pereira DA, Gatto IRH, Mathias LA, Montassier HJ, de Oliveira LG. A cross-sectional study of swine influenza in intensive and extensive farms in the northeastern region of the state of São Paulo, Brazil. Trop Anim Health Prod 2016; 49:25-30. [PMID: 27637594 DOI: 10.1007/s11250-016-1153-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Accepted: 09/07/2016] [Indexed: 10/21/2022]
Abstract
Swine influenza (SI) is a seasonal infectious disease highly important to the world pig industry. Loss of daily weight gain, increased costs for the prevention and treatment of secondary infections are the main economic losses associated with the presence of this disease. However, some epidemiological features of SI remain quite unclear. This study focused on assessing the prevalence of swine influenza virus (SIV) infection in intensive and extensive pig herds and associating risk factors. A set of 601 blood samples of five intensive farrow-to-finish farms and 361 blood samples from 56 extensive farms were analyzed using an indirect ELISA kit CIVTEST SUIS INFLUENZA®, Hipra (Amer, Spain), in order to detect anti-SIV antibodies. In total, 24.13 % of samples from intensive herds were positive, while no positive samples were detected in extensive rearing herds. Sow and weaning piglets had the highest prevalence values. In the intensive rearing system, occurrence of reproductive disorders and exposure to recently introduced animals were positively associated with the disease occurrence in swine herds. The findings highlight the importance of sows in the epidemiology of the disease and bring information about risk factors involved in the occurrence of swine influenza in intensive herds.
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Affiliation(s)
- Henrique Meiroz de Souza Almeida
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Gabriel Yuri Storino
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Daniele Araújo Pereira
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Igor Renan Honorato Gatto
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Luis Antonio Mathias
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Hélio José Montassier
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil
| | - Luís Guilherme de Oliveira
- Faculty of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Via de Acesso prof. Paulo Donato Castellane s/n, 14884-900, Jaboticabal, São Paulo, Brazil.
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