1
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Liang Y, Liu X, Chang H, Yap J, Sun W, Gao H. Inhibitory effects of nitrite and sulfite/peroxymonosulfate on bacteria are mediated respectively through respiration and intracellular GSH homeostasis. Microbiol Res 2025; 290:127962. [PMID: 39489134 DOI: 10.1016/j.micres.2024.127962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 10/26/2024] [Accepted: 10/30/2024] [Indexed: 11/05/2024]
Abstract
As nitrite, sulfite has been used in food preservation for centuries but how it inhibits bacterial growth remains underexplored. To address this issue, in this study, we set out to test if cytochrome (cyt) c proteins protect bacteria from the damage of certain reactive sulfur species (RSS) because they do so in the case of reactive nitrogen species (RNS). We show that some reactive sulfur species, such as sulfite and peroxymonosulfate (PMS), inhibit growth of bacterial strains devoid of cytochrome (cyt) c proteins. Subsequent investigations link the inhibition of sulfite/PMS to activity of cbb3-type heme-copper oxidase (cbb3-HCO). However, in vitro comparative analysis rules out that either cbb3-HCO or cyt bd oxidase is the primary target of sulfite/PMS. Instead, we found that sulfite/PMS and the cbb3-HCO loss regulate intracellular redox status in a similar manner, by affecting GSH/GSSG homeostasis. The link between the GSH/GSSG homeostasis and sulfite/PMS is further substantiated by using the mutants with enhanced GSSG generation. Furthermore, we present the data to show that inhibitory effects of nitrite and sulfite/PMS are additive although the overall effects may vary depending on species. Our results open an avenue to control bacteria by developing more robust agents that modulating intracellular redox status, which may be used in combination with nitrite as a promising antimicrobial strategy.
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Affiliation(s)
- Yuxuan Liang
- Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Xinyue Liu
- Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China
| | | | - Jim Yap
- Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Weining Sun
- Department of Immunology and Pathogen Biology, School of Basic Medical Sciences, Hangzhou Normal University, Hangzhou, China.
| | - Haichun Gao
- Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou, China.
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2
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Bian J, An X, Zhao J, Liao Y, Lan X, Liu R, Hu C, Chen JJ, Liu H, Qu J. Directional Electron Transfer in Enzymatic Nano-Bio Hybrids for Selective Photobiocatalytic Conversion of Nitrate. Angew Chem Int Ed Engl 2024; 63:e202412194. [PMID: 39383008 DOI: 10.1002/anie.202412194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 09/19/2024] [Accepted: 10/09/2024] [Indexed: 10/11/2024]
Abstract
Semi-artificial photosynthetic system (SAPS) that combines enzymes or cellular organisms with light-absorbing semiconductors, has emerged as an attractive approach for nitrogen conversion, yet faces the challenge of reaction pathway regulation. Herein, we find that photoelectrons can transfer from the -C≡N groups at the edge of cyano-rich carbon nitride (g-C3N4-CN) to nitrate reductase (NarGH), while the direct electron transfer to nitrite reductase (cd1NiR) is inhibited due to the physiological distance limit of active sites (>14 Å). By means of the directional electron transfer between g-C3N4-CN and extracted biological enzymes, the product of the denitrification reaction was switched from inert N2 to usable nitrite with an unprecedented selectivity of up to 95.3 %. The converted nitrite could be further utilized by anammox microbiota and dissimilatory nitrate reduction to ammonia (DNRA) microorganisms, doubling the efficiency of total nitrogen removal (96.5±2.3 %) for biological nitrogen removal and ammonia generation (12.6 mg NH4 +-N L-1 h-1), respectively. Thus, our work paves an appealing way for the sustainable treatment and utilization of nitrate for ammonia fuel production by strategically regulating the electron transfer pathway across the biotic-abiotic interface.
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Affiliation(s)
- Jiyong Bian
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China
| | - Xiaoqiang An
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Jing Zhao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Yang Liao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Xianen Lan
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Ruiping Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Chengzhi Hu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China
| | - Jie-Jie Chen
- Department of Environmental Science and Engineering, University of Science and Technology of China, 230026, Hefei, Anhui
| | - Huijuan Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
| | - Jiuhui Qu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, 100084, Beijing, China
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China
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3
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Martinez Fernandez J, Haji Seyed Javadi A, Teat SJ, Cundari TR, Tilley TD. Synthetically Reversible, Proton-Mediated Nitrite N-O Bond Cleavage at a Dicopper Site. J Am Chem Soc 2024; 146:34962-34969. [PMID: 39655620 DOI: 10.1021/jacs.4c14642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2024]
Abstract
A monocationic dicopper(I,I) nitrite complex [Cu2(μ-κ1:κ1-O2N)DPFN][NTf2] (2) (DPFN = 2,7-bis(fluoro-di(2-pyridyl)methyl)-1,8-naphthyridine, NTf2- = N(SO2CF3)2-), was synthesized by treatment of a dicopper acetonitrile complex, [Cu2(μ-MeCN)DPFN][NTf2]2 (1), with tetrabutylammonium nitrite ([nBu4N][NO2]). DFT calculations indicate that 2 is one of three linkage isomers that are close in energy and presumably accessible in solution. Reaction of the μ-κ1:κ1-O2N complex with p-TolSH produces nitrous acid (HONO) and the corresponding dicopper thiolate species via an acid-base exchange reaction. Notably, treatment of 2 with HNTf2 results in N-O bond cleavage in the putative, HONO-ligated complex to form the more thermodynamically favorable nitrosyl-bridged dicopper complex [Cu2(μ-NO)(μ-OH)DPFN][NTf2]2 (4). This scission can be reversed via deprotonation of the hydroxy ligand with KOtBu. X-ray diffraction studies confirmed the solid-state molecular structures of 2 and 4. DFT calculations were used to construct a reaction coordinate diagram detailing formation of the μ-NO complex and to describe its electronic structure. The nitrosyl ligand in 4 is chemically labile, as demonstrated by its ready displacement in reactions with CO or NO2-.
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Affiliation(s)
- Jose Martinez Fernandez
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Alireza Haji Seyed Javadi
- Department of Chemistry, Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas 76203, United States
| | - Simon J Teat
- Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Thomas R Cundari
- Department of Chemistry, Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas 76203, United States
| | - T Don Tilley
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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4
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Kakkarakkal DC, Radhamani R, Bertke JA, Kundu S. Tuning the Reactivity of Copper(II)-Nitrite Core Towards Nitric Oxide Generation. Chemistry 2024; 30:e202403158. [PMID: 39352917 DOI: 10.1002/chem.202403158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Revised: 09/19/2024] [Accepted: 10/01/2024] [Indexed: 10/04/2024]
Abstract
Insights into the molecular mechanism and factors affecting nitrite-to-NO transformation at transition metal sites are essential for developing sustainable technologies relevant to NO-based therapeutics, waste water treatment, and agriculture. A set of copper(II)-nitrite complexes 1-4 have been isolated employing tridentate pincer-type ligands (quL, pyL, ClArOL-, PhOL-) featuring systematically varied donors. Although the X-ray crystal structures of the copper(II)-nitrite cores in 1-4 are comparable, electrochemical studies on complexes 1-4 reveal that redox properties of these complexes differ due to the changes in the σ-donor abilities of the phenolate/N-heterocycle based donor sites. Reactivity of these nitrite complexes with oxygen-atom-transfer (OAT) reagent (e. g. triphenyl phosphine Ph3P) and H+/e- donor reagent (e. g. substituted phenols ArOH) show the reduction of nitrite to NO gas. Detailed kinetic investigations including kinetic isotope effect (KIE), Eyring analyses for determining the activation parameters unfold that reduction of nitrite at copper(II) by Ph3P or ArOH are influenced by the CuII/CuI redox potential. Finally, this study allows mechanism driven development of catalytic nitrite reduction by ArOH in the presence of 10 mol % copper complex (1).
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Affiliation(s)
- Dhanusree C Kakkarakkal
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Rejith Radhamani
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Jeffery A Bertke
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C., 20057, United States
| | - Subrata Kundu
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
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5
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Biswas J, Sanden S, Bhardwaj P, Siegmund D, Kumar P, Apfel UP. A terpyridine-based copper complex for electrochemical reduction of nitrite to nitric oxide. Dalton Trans 2024. [PMID: 39670725 DOI: 10.1039/d4dt02777a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2024]
Abstract
In biological systems, nitrite reductase enzymes (NIRs) are responsible for reduction of nitrite (NO2-) to nitric oxide (NO). These NIRs have mostly Cu- or Fe-containing active sites, surrounded by amine-containing ligands. Therefore, mononuclear Cu complexes with N-donor ligands are highly relevant in the development of NIR model systems and in the mechanistic investigation of the nitrite reduction reaction. Herein, we report on a terpyridine-based CuII complex with square planar geometry for H+-assisted electrochemical reduction of NO2-. Through electrochemical measurements, spectroscopic characterization and isotope-labelling experiments we propose a mechanistic reaction pathway involving an unstable HNO2 state. The CuI intermediate, formed electrochemically, was isolated and its molecular structure was deduced, showing linkage isomerism of the nitrite ligand. Moreover, qualitative and quantitative product analysis by GC-MS shows N2O formed as a side product along with the main product NO. Furthermore, by obtaining single crystals and conducting structural analysis we were able to determine the structural arrangement and redox state of the complex after electrochemical treatment.
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Affiliation(s)
- Jyotiprokash Biswas
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Sebastian Sanden
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Prabhakar Bhardwaj
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Tirupati 517507, India
| | - Daniel Siegmund
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
- Department of Electrosynthesis, Fraunhofer UMSICHT, Osterfelder Str. 3, 46047 Oberhausen, Germany
| | - Pankaj Kumar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Tirupati 517507, India
| | - Ulf-Peter Apfel
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany.
- Department of Electrosynthesis, Fraunhofer UMSICHT, Osterfelder Str. 3, 46047 Oberhausen, Germany
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6
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Kametani Y, Shiota Y. Mechanistic studies of NO x reduction reactions involving copper complexes: encouragement of DFT calculations. Dalton Trans 2024; 53:19081-19087. [PMID: 39530191 DOI: 10.1039/d4dt02420f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
The reduction of nitrogen oxides (NOx), which is mainly mediated by metalloenzymes and metal complexes, is a critical process in the nitrogen cycle and environmental remediation. This Frontier article highlights the importance of density functional theory (DFT) calculations to gain mechanistic insights into nitrite (NO2-) and nitric oxide (NO) reduction reactions facilitated by copper complexes by focusing on two key processes: the reduction of NO2- to NO by a monocopper complex, with special emphasis on the concerted proton-electron transfer, and the reduction of NO to N2O by a dicopper complex, which involves N-N bond formation, N2O2 isomerization, and N-O bond cleavage. These findings underscore the utility of DFT calculations in unraveling complicated reaction mechanisms and offer a foundation for future research aimed at improving the reactivity of transition metal complexes in NOx reduction reactions.
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Affiliation(s)
- Yohei Kametani
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
| | - Yoshihito Shiota
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
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7
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Karmakar S, Patra S, Halder R, Karmakar S, Majumdar A. Reduction of Nitrite in an Iron(II)-Nitrito Compound by Thiols and Selenol Produces Dinitrosyl Iron Complexes via an {FeNO} 7 Intermediate. Inorg Chem 2024; 63:23202-23220. [PMID: 39569438 DOI: 10.1021/acs.inorgchem.4c03555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2024]
Abstract
Reaction of an Fe(II) complex, [Fe(6-COO--tpa)]1+ (1), with PhE- and NO2- produced [Fe(6-COO--tpa)(EPh)] (E = S, 2a; Se, 3) and [Fe(6-COO--tpa)(κ2-O,O'-NO2)] (4), respectively (6-COOH-tpa is bis(2-pyridylmethyl)(6-carboxyl-2-pyridylmethyl)amine). Treatment of 4 with 2 equiv of PhEH (E = S, Se) produced NO in ∼40% yields, respectively, along with 1 and the DNICs, [Fe(EPh)2(NO)2]1- (E = S, Se). Treatment of 4 with excess PhEH produced NO in similar yields, while 4 was converted to the same DNICs and 2a/3 (instead of 1). The DNICs have been proposed to be generated via the reaction of PhE- with an in situ generated, unstable {FeNO}7 intermediate, [Fe(6-COO--tpa)(NO)]1+ (6), which has also been synthesized separately. Compound 6 reacts with PhS- to generate [Fe(SPh)2(NO)2]1-, thus supporting the proposed reaction pathway. Finally, while the treatment of two unique compounds, featuring inbuilt proton sources, [Fe(6-COO--tpa)(S-C6H4-p-COOH)] (7) and [Fe(6-COO--tpa)(S-C6H4-o-OH)] (8), with 0.5 and 1 equiv of NO2- could produce NO only in 8-26% yields, treatment of 4 with HS-C6H4-p-COOH and HS-C6H4-o-OH produced NO in much higher yields (65-77%). The combined results delineated the importance of coordination of NO2- for the proton-assisted reduction of NO2- to generate NO.
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Affiliation(s)
- Soumik Karmakar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, West Bengal, India
| | - Suman Patra
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, West Bengal, India
| | - Ritapravo Halder
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, West Bengal, India
| | - Suchismita Karmakar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, West Bengal, India
| | - Amit Majumdar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, West Bengal, India
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8
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Moore JM, Fout AR. Tetrapodal iron complexes invoke observable intermediates in nitrate and nitrite reduction. Chem Sci 2024:d4sc06570k. [PMID: 39650219 PMCID: PMC11622133 DOI: 10.1039/d4sc06570k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 11/21/2024] [Indexed: 12/11/2024] Open
Abstract
This study investigates the mechanistic pathways of nitrate and nitrite reduction by the tetrapodal iron complex [Py2Py(afamcyp)2Fe]OTf2, revealing key intermediates to elucidate the reaction process. Using UV-Vis, IR, mass and NMR spectroscopies, stable binding of oxyanions to the iron centre was observed, supporting the formation of the iron(iii)-hydroxide intermediate [Py2Py(afamcyp)2Fe(OH)]OTf2. This intermediate is less stable than in previous systems, providing insights into the behaviour of metalloenzymes. A bimetallic mechanism is proposed for nitrogen oxyanion reduction where additional iron is required to drive the complete reaction, resulting in the formation of the final nitrosyl complex, Py2Py(pimcyp)2Fe(NO), and water. Our findings enhance the understanding of iron-based reduction processes and contribute to the broader knowledge of oxyanion reduction mechanisms.
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Affiliation(s)
- Jewelianna M Moore
- Department of Chemistry, Texas A&M University College Station Texas 77843 USA
| | - Alison R Fout
- Department of Chemistry, Texas A&M University College Station Texas 77843 USA
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9
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Zhao Y, Zhu Y, Huang J, Song Z, Tang W. Influence of in situ biochar capping on microbial dynamics and ammonia nitrogen release in sediment. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 373:123524. [PMID: 39644550 DOI: 10.1016/j.jenvman.2024.123524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 11/16/2024] [Accepted: 11/27/2024] [Indexed: 12/09/2024]
Abstract
To study the influence of in situ biochar (BC) capping technique on the release of ammonia nitrogen (NH4+-N) from sediments, a field mesocosm experiment was conducted in Baiyangdian Lake (BYDL), a critical water body often referred to as the "kidney of North China" where sediment pollution poses a significant threat to water quality. This study also assessed the impact of BC on sediment microorganisms. The results showed that the NH4+-N concentration in the overlying water of the BC-treated mesocosms was the lowest among four treatments, decreasing to 0.051 mg L-1 by the 60th day. More importantly, the BC treatment showed the least increase in NH4+-N concentrations in sediments compared to other treatments. For sediments capped with a 4 cm layer of BC, the potential release flux of NH4+-N was reduced from 1.84 mg m-2 d-1 to -0.76 mg m-2 d-1. This reduction is likely due to the negatively charged surfaces of biochar, which enhance NH4+-N adsorption through electrostatic interactions. Additionally, BC modified the physical and chemical properties of the surface sediment, improving pH and increasing both organic content and the carbon/nitrogen (C/N) ratio. These changes influenced the microbial community structure within the sediments, enhancing NH4+-N removal. After 60 days, a significant alteration in the microbial community was observed in the BC-treated surface sediments. The addition of BC significantly increased the abundance of Proteobacteria and Firmicutes of the phyla in the sediments. Furthermore, BC enhanced the expression of functional genes including amoA, amoB, nirK, nirS, hzsB, nrfA and ureC, which are likely the primary microbial mechanisms promoting NH4+-N conversion in sediments for final removal.
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Affiliation(s)
- Yu Zhao
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Yaoyao Zhu
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; Beijing Enterprises Water Group Limited, Beijing, 100102, China
| | - Jianyin Huang
- Sustainable Infrastructure and Resource Management (SIRM), STEM, University of South Australia, Mawson Lakes Campus, Mawson Lakes, South Australia, 5095, Australia; School of Agriculture and Food Sustainability, The University of Queensland, St Lucia, Queensland, 4072, Australia.
| | - Zhixin Song
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450011, China.
| | - Wenzhong Tang
- State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
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10
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Zhao Y, Hu Z, Hao Z, Xie H, Liu D, Yan P, Xu H, Wu H, Zhang J. Revealing the size effect mechanisms of micro(nano)plastics on nitrogen removal performance of constructed wetland. JOURNAL OF HAZARDOUS MATERIALS 2024; 480:136409. [PMID: 39531821 DOI: 10.1016/j.jhazmat.2024.136409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 10/29/2024] [Accepted: 11/03/2024] [Indexed: 11/16/2024]
Abstract
Micro(nano)plastics (MPs) in aquatic environments can disrupt wastewater treatment, particularly nitrogen removal in constructed wetlands (CWs). However, their broader effects on microbial and plant nitrogen metabolism remain unclear. This study investigated the effects of different-sized MPs (4 mm, 100 µm, and 100 nm) on nitrogen transformation in CWs. Results revealed that 4 mm- and 100 µm-MPs did not significantly affect total nitrogen (TN) removal, although 100 µm-MPs significantly increased leaf antioxidant enzyme activities and reduced plant uptake of nitrogen by 12.95 % (p < 0.05). In contrast, 100 nm-MPs decreased the TN removal efficiency by 7.97 % via inhibiting both nitrification and denitrification, since 100 nm-MPs penetrated cell membranes, disrupted reactive oxygen species balance, and reduced bacterial viability, thus suppressing microbial nitrogen degradation by 8.07 % (p < 0.05). Additionally, 100 nm-MPs significantly inhibited plant growth and reduced plant nitrogen uptake by 16.05 % (p < 0.05). Furthermore, 100 µm-MPs increased the abundance of nitrifiers but reduced denitrifiers and functional genes, whereas 100 nm-MPs reduced the abundance of both nitrifiers and denitrifiers along with their functional genes (p < 0.05). These findings highlight the need to improve waste management to mitigate the adverse effects of MPs on nitrogen removal.
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Affiliation(s)
- Yanhui Zhao
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China
| | - Zhen Hu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China.
| | - Zeyu Hao
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China
| | - Huijun Xie
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, PR China
| | - Daoxing Liu
- Shandong Innovation and Entrepreneurship Community of Green Industry and Environmental Security, Jinan 250199, PR China; Shandong Academy of Environmental Science Co., LTD., Jinan 250199, PR China
| | - Peihao Yan
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China
| | - Han Xu
- College of Agriculture and Forestry Science, Linyi University, Linyi 276000, PR China
| | - Haiming Wu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China
| | - Jian Zhang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, PR China; Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, PR China.
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11
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Jain V, Tyagi S, Roy P, Pillai PP. Ammonia Synthesis with Visible Light and Quantum Dots. J Am Chem Soc 2024; 146:32356-32365. [PMID: 39552033 DOI: 10.1021/jacs.4c06713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2024]
Abstract
Light-assisted synthesis of ammonia from nitrate and nitrite sources is a sustainable approach to reduce the burden of the energy-intensive Haber-Bosch process. However, poor selectivity and the need for UV-active photocatalysts are the current bottlenecks in the synthesis of ammonia from nitrate and nitrite sources. Herein, we introduce selective visible-light-driven ammonia production from nitrate and nitrite ions with indium phosphide quantum dots (InP QDs) as the photocatalyst. The presence of catalytic indium sites and microenvironment modulation through an interplay of catalyst-reactant interactions resulted in efficient and selective ammonia formation under visible light. Ammonia was produced in an attractive yield of ∼94% in both aqueous and gaseous phases within 2 h of visible-light irradiation at room temperature. A decent formation of ammonia was observed under sunlight as well, strengthening the translational prospects of InP QD photocatalysts. Mechanistic investigations ascertained a negligible role of competing hydrogen evolution in direct nitrate reduction, confirming the active participation of photoexcited charge carriers from InP QDs in the ammonia synthesis. Kinetic studies revealed the energetically challenging nitrate-to-nitrite conversion as the rate-determining step, with subsequent reactions proceeding with ∼100% conversion to yield ammonia. A series of experiments concluded that water is the proton source in the InP QD-photocatalyzed synthesis of ammonia. Our study shows the impact of the rationally designed core and surface of InP QD-based photocatalysts in developing sustainable routes to produce ammonia beyond the Haber-Bosch process.
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Affiliation(s)
- Vanshika Jain
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Dr. Homi Bhabha Road, Pune 411 008, India
| | - Shreya Tyagi
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Dr. Homi Bhabha Road, Pune 411 008, India
| | - Pradyut Roy
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Dr. Homi Bhabha Road, Pune 411 008, India
| | - Pramod P Pillai
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Dr. Homi Bhabha Road, Pune 411 008, India
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12
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Hsiang YR, Meitei NJ, Henry GE, Hsu SCN, Lin YF. Mechanistic insights into nitric oxide generation from nitrite via O-atom transfer in the unsymmetrical β-diketiminato copper(II) nitrite complex. Dalton Trans 2024; 53:18629-18639. [PMID: 39479872 DOI: 10.1039/d4dt02359e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2024]
Abstract
In this study, we employed DFT calculations to elucidate the mechanism of NO generation from nitrite via PPh3-induced oxygen atom transfer (OAT) in the unsymmetrical β-diketiminato copper(II), LCuIIONO. We discovered that the OAT process involves the cooperation of two PPh3 ligands and follows the mechanism distinct from that of the symmetrical β-diketiminato analogue. The ΔG‡ value, calculated to be 34.8 kcal mol-1, closely matches experimental data. The finding is further supported by analyzing the OAT product yields with varying equivalents of PPh3. The penta-coordinated species 5a, with PPh3 occupying the axial site, forms in the final stage of the OAT process. The isomerization of 5a and the decoordination of the hemilabile pyridyl arm synergistically reduce Cu(II) to Cu(I), facilitating NO release from the Cu(I) centre. These computational results provide valuable insights for the ligand design for PPh3-induced OAT reactions to produce NO in Cu(II) nitrite systems.
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Affiliation(s)
- Yi-Rong Hsiang
- Department of Chemistry, National Dong Hwa University, Hualien 974301, Taiwan.
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807378, Taiwan.
| | - Naorem Jemes Meitei
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807378, Taiwan.
| | - Gifta Evangeline Henry
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807378, Taiwan.
- PG and Research Department of Chemistry, Bishop Heber College affiliated to Bharathidasan University, Tiruchirapalli 620017, India
| | - Sodio C N Hsu
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung 807378, Taiwan.
- Department of Medical Research, Kaohsiung Medical University Hospital, Kaohsiung 807378, Taiwan
| | - Ya-Fan Lin
- Department of Chemistry, National Dong Hwa University, Hualien 974301, Taiwan.
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13
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Cheng S, Gong X, Xue W, Kardol P, Delgado-Baquerizo M, Ling N, Chen X, Liu M. Evolutionarily conserved core microbiota as an extended trait in nitrogen acquisition strategy of herbaceous species. THE NEW PHYTOLOGIST 2024; 244:1570-1584. [PMID: 39253787 DOI: 10.1111/nph.20118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 08/27/2024] [Indexed: 09/11/2024]
Abstract
Microbiota have co-evolved with plants over millions of years and are intimately linked to plants, ranging from symbiosis to pathogenesis. However, our understanding of the existence of a shared core microbiota across phylogenetically diverse plants remains limited. A common garden field experiment was conducted to investigate the rhizosphere microbial communities of phylogenetically contrasting herbaceous families. Through a combination of metagenomic sequencing, analysis of plant economic traits, and soil biochemical properties, we aimed to elucidate the eco-evolutionary role of the core rhizosphere microbiota in light of plant economic strategies. We identified a conserved core microbiota consisting of 278 taxa that was closely associated with the phylogeny of the plants studied. This core microbiota actively participated in multiple nitrogen metabolic processes and showed a strong correlation with the functional potential of rhizosphere nitrogen cycling, thereby serving as an extended trait in the plant nitrogen acquisition. Furthermore, our examination of simulated species loss revealed the crucial role of the core microbiota in maintaining the rhizosphere community's network stability. Our study highlighted that the core microbiota, which exhibited a phylogenetically conserved association with plants, potentially represented an extension of the plant phenotype and played an important role in nitrogen acquisition. These findings held implications for the utilization of microbiota-mediated plant functions.
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Affiliation(s)
- Saisai Cheng
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xin Gong
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Wenfeng Xue
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Paul Kardol
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Science, 75651, Uppsala, Sweden
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 90751, Umeå, Sweden
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, 41012, Sevilla, Spain
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, 41013, Sevilla, Spain
| | - Ning Ling
- Centre for Grassland Microbiome, State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, China
| | - Xiaoyun Chen
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, 210095, China
| | - Manqiang Liu
- Centre for Grassland Microbiome, State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, China
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14
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Engbers S, van Langevelde PH, Hetterscheid DGH, Klein JEM. Discussing the Terms Biomimetic and Bioinspired within Bioinorganic Chemistry. Inorg Chem 2024; 63:20057-20067. [PMID: 39307983 PMCID: PMC11523218 DOI: 10.1021/acs.inorgchem.4c01070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 06/13/2024] [Accepted: 09/12/2024] [Indexed: 10/22/2024]
Abstract
The terms biomimetic and bioinspired are very relevant in the field of bioinorganic chemistry and have been widely applied. Although they were defined by the International Organization for Standardization in 2015, these terms have at times been used rather ambiguously in the literature. This may be due to the inherent complexity of bioinorganic systems where, for example, a structural model of an enzyme active site may not replicate its function. Conversely, the function of an enzyme may be reproduced in a system where the structure does not resemble the enzyme's active site. To address this, we suggest definitions for the terms biomimetic and bioinspired wherein structure and function have been decoupled. With the help of some representative case studies we have outlined the challenges that may arise and make suggestions on how to apply terminology with careful intention.
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Affiliation(s)
- Silène Engbers
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of
Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, (The Netherlands)
| | - Phebe H. van Langevelde
- Leiden
Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | | | - Johannes E. M.
N. Klein
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of
Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, (The Netherlands)
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15
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Islam MF, Shahriar MH, Rahaman M, Aoki K, Nagao Y, Aldalbahi A, Uddin J, Hasnat MA. Electrokinetics of Nitrite to Ammonia Conversion in the Neutral Medium Over A Platinum Surface. Chem Asian J 2024; 19:e202400362. [PMID: 39087987 DOI: 10.1002/asia.202400362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 06/25/2024] [Accepted: 07/30/2024] [Indexed: 08/02/2024]
Abstract
Polycrystalline Pt electrode was employed to selectively convert nitrite ions (N O 2 - ${{{\rm N}{\rm O}}_{2}^{-}}$ ) into useful nitrogenous compound through electrochemical reduction reaction in neutral medium. According to adsorptive stripping analysis, the reduction process produced nitric oxide (NO) on the surface of Pt electrode. The spectroscopic test and gas chromatographic studies discovered the presence of ammonia (NH3) in the electrolyzed solution, suggesting the transformation of adsorbed NO into NH3 during the reverse scan. Scan rate dependent investigation was performed to elucidate kinetic information relating to this reaction on Pt surface. From Ep vs scan rate (υ) and jp vs υ (logarithmic plot), it was found that the conversion ofN O 2 - ${{{\rm N}{\rm O}}_{2}^{-}}$ ion into NO is an irreversible reaction which relies on the diffusion ofN O 2 - ${{{\rm N}{\rm O}}_{2}^{-}}$ ions to electrode surface. The Tafel analysis unveiled that the first electron transfer sets the overall reaction rate, having formal reduction potential, E0'=-0.46 V and standard heterogeneous rate constant, k0=1 . 07 × 10 - 2 ${1.07\times {10}^{-2}}$ cm s-1. Reductive transfer coefficient (α) is another kinetics parameter, which was found to be approximate 0.77 from the difference between Ep and Ep/2 of the voltammograms obtained over scan rate range 0.005 V s-1 to 0.250 V s-1, indicating a stepwise process. According to temperature-dependent voltammograms, the nitrite reduction reaction on Pt had a calculated activation energy of about 19.8 kJ mol-1 and a pre-exponential factor of about 8.39×103 mA cm-2.
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Affiliation(s)
- Md Fahamidul Islam
- Electrochemistry & Catalysis Research Laboratory (ECRL), Department of Chemistry, School of Physical Sciences, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh
- Department of Chemistry, Faculty of Science, Noakhali Science and Technology University, Noakhali, 3814, Bangladesh
| | - Md Hassan Shahriar
- Electrochemistry & Catalysis Research Laboratory (ECRL), Department of Chemistry, School of Physical Sciences, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh
| | - Mostafizur Rahaman
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Kentaro Aoki
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa, 923-1292, Japan
| | - Yuki Nagao
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, Ishikawa, 923-1292, Japan
| | - Ali Aldalbahi
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Jamal Uddin
- Center for Nanotechnology, Department of Natural Sciences, Coppin State University (CSU), Baltimore, MD, USA
| | - Mohammad A Hasnat
- Electrochemistry & Catalysis Research Laboratory (ECRL), Department of Chemistry, School of Physical Sciences, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh
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16
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Anju BS, Nair NR, Rajput J, Bertke JA, Mondal B, Kundu S. Role of ancillary ligands in S-nitrosothiol and NO generation from nitrite-thiol interactions at mononuclear zinc(ii) sites. Chem Sci 2024:d4sc04853a. [PMID: 39416287 PMCID: PMC11474386 DOI: 10.1039/d4sc04853a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Accepted: 10/02/2024] [Indexed: 10/19/2024] Open
Abstract
Generation of S-nitrosothiol (RSNO) and nitric oxide (NO) mediated by zinc(ii) coordination motifs is of prime importance for understanding the role of zinc(ii)-based cofactors in redox-signalling pathways. This study uniquely employs a set of mononuclear [L2ZnII]2+ cores (where L = Me4PzPz/Me2PzPy/Me2PzQu) for introducing subtle alterations of the primary coordination sphere and investigates the role of ligand tuning in the transformation of NO2 - in the presence of thiols. Single crystal X-ray diffraction (SCXRD) analyses on [L2ZnII-X](X) (where X = perchlorate/triflate) illustrate consistent changes in the bond distances, thereby showing variations of the metal-ligand interactions depending on the nature of the heterocyclic donor arms (pyrazole/pyridine/quinoline). Moreover, such tuning of the ligands affects the Lewis-acidity of the [L2ZnII]2+ cores as evaluated by 31P NMR and SCXRD studies on the 1 : 1 acid-base adducts [L2ZnII(OPEt3)]2+. Crystallographic and 15N NMR spectroscopic analyses on the nitrite complexes [L2ZnII(κ2-nitrite)](ClO4) reveal that the chemical environments of the nitrite anions in these complexes are nearly identical, despite the dissimilarity in the Lewis-acidity of the [L2ZnII]2+ cores. Interestingly, RSNO and NO generation from the reactions of [L2ZnII(κ2-nitrite)](ClO4) with 4-tert-butylbenzylthiol ( t BuBnSH) exhibits that the [(Me2PzQu)2ZnII]2+ core is the most efficient in promoting nitrite-thiol interactions due to the ease of available hemilabile coordination sites at the Lewis acidic [ZnII]. Detailed UV-vis studies in tandem with computational investigation, for the first time, provide an unambiguous demonstration of the nitrous acid (HNO2) intermediate generated through an intramolecular proton-transfer from thiol to nitrite at zinc(ii).
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Affiliation(s)
- Balakrishnan S Anju
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM) Thiruvananthapuram - 695551 India
| | - Neeraja R Nair
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM) Thiruvananthapuram - 695551 India
| | - Janavi Rajput
- School of Chemical Sciences, Indian Institute of Technology Mandi Kamand Himachal Pradesh 175075 India
| | - Jeffery A Bertke
- Department of Chemistry, Georgetown University Box 571227-1227 Washington, D. C. 20057 USA
| | - Bhaskar Mondal
- School of Chemical Sciences, Indian Institute of Technology Mandi Kamand Himachal Pradesh 175075 India
| | - Subrata Kundu
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM) Thiruvananthapuram - 695551 India
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17
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Mu M, Li D, Lin S, Bi H, Liu X, Wang Z, Qian C, Ji J. Insights into the individual and combined effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox: Nitrogen removal performance, enzyme activity and microbial community. CHEMOSPHERE 2024; 365:143308. [PMID: 39265735 DOI: 10.1016/j.chemosphere.2024.143308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 09/03/2024] [Accepted: 09/09/2024] [Indexed: 09/14/2024]
Abstract
Anaerobic ammonium oxidation (anammox) is an efficient and economical nitrogen removal process for treating ammonium-rich industrial wastewaters. However, Cu(Ⅱ) and Ni(Ⅱ) present in industrial wastewaters are toxic to anaerobic ammonium-oxidizing bacteria (AnAOB). Unfortunately, the effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox have not been thoroughly investigated, especially when Cu(Ⅱ) and Ni(Ⅱ) coexist. This work comprehensively investigated the individual and combined effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox and revealed the inhibitory mechanisms. With the influent NH4+-N and NO2--N concentration of 230 and 250 mg L-1, the inhibition thresholds on anammox are 2.00 mg L-1 Cu(Ⅱ), 1.00 mg L-1 Ni(Ⅱ) and 1.00 mg L-1 Cu(Ⅱ) + 1.00 mg L-1 Ni(Ⅱ), and higher Cu(Ⅱ) or Ni(Ⅱ) concentrations resulted in sharp deteriorations of nitrogen removal performance. The inhibition of Ni(Ⅱ) on anammox was mainly attributed to the adverse effect on NiR activity, while the inhibition mechanism of Cu(Ⅱ) seemed to be unrelated to the four functional enzymes, but associated with disruption of cellular and organellar membranes. The behavior of extracellular polymeric substances (EPS) contributed to the antagonistic effect between Cu(Ⅱ) and Ni(Ⅱ) on anammox. In addition, the niche of Candidatus Brocadia and Candidatus Jettenia shifted under the Cu(II) and Ni(II) stress, and Candidatus Jettenia displayed greater tolerance to Cu(II) and Ni(II) stress. In conclusion, this research clarified the combined effect and the inhibitory mechanism of multiple heavy metals on anammox, and provide the guidances for anammox process application in treating high-ammonium industrial wastewaters containing heavy metals.
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Affiliation(s)
- Minghao Mu
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Dengzhi Li
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China
| | - Shilin Lin
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China
| | - Haisong Bi
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Xinqiang Liu
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Zheng Wang
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Chengduo Qian
- Innovation Research Institute, Shandong Hi-speed Group, Jinan, 250001, China
| | - Junyuan Ji
- Key Lab of Marine Environment and Ecology of Ministry of Education, Ocean University of China, Qingdao, 266100, China.
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18
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Zhang R, Hu W, Liu J, Xu K, Liu Y, Yao Y, Liu M, Zhang XG, Li H, He P, Huo S. Electrochemical Synthesis of Urea: Co-Reduction of Nitrite and Carbon Dioxide on Binuclear Cobalt Phthalocyanine. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2403285. [PMID: 39031789 DOI: 10.1002/smll.202403285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 06/04/2024] [Indexed: 07/22/2024]
Abstract
Exploration of molecular catalysts with the atomic-level tunability of molecular structures offers promising avenues for developing high-performance catalysts for the electrochemical co-reduction reaction of carbon dioxide (CO2) and nitrite (NO2 -) into value-added urea. In this work, a binuclear cobalt phthalocyanine (biCoPc) catalyst is prepared through chemical synthesis and applied as a C─N coupling catalyst toward urea. Achieving a remarkable Faradaic efficiency of 47.4% for urea production at -0.5 V versus reversible hydrogen electrode (RHE), this biCoPc outperforms many known molecular catalysts in this specific application. Its unique planar macromolecular structure and the increased valence state of cobalt promote the adsorption of nitrogenous and carbonaceous species, a critical factor in facilitating the multi-electron C─N coupling. Combining highly sensitive in situ attenuated total reflection surface-enhanced infrared absorption spectroscopy (ATR-SEIRAS) with density functional theory (DFT) calculations, the linear adsorbed CO (COL) and bridge adsorbed CO (COB) is captured on biCoPc catalyst during the co-reduction reaction. COB, a pivotal intermediate in the co-reduction from CO2 and nitrite to urea, is evidenced to be labile and may be attacked by nitrite, promoting urea production. This work demonstrates the importance of designing molecular catalysts for efficient co-reduction of CO2 and nitrite to urea.
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Affiliation(s)
- Rui Zhang
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Wenhui Hu
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Jingjing Liu
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Kaidi Xu
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Yi Liu
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Yahong Yao
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Minmin Liu
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
| | - Xia-Guang Zhang
- Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, Collaborative Innovation Center of Henan Province for Green Manufacturing of Fine Chemicals, College of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China
| | - Hong Li
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Collaborative Innovation Center of Chemistry for Energy Materials, Department of Chemistry, Fudan University, Shanghai, 200438, China
| | - Peng He
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, ID, 46556, USA
| | - Shengjuan Huo
- International Joint Laboratory of Catalytic Chemistry, Department of Chemistry, Institute for Sustainable Energy, College of Sciences, Shanghai University, No. 99 Shangda Road, Shanghai, 200444, China
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19
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Padmanaban S, Chun J, Lee Y, Cho KB, Choi J, Lee Y. Nitrate Upcycling Mediated by Organonickel Catalysis. Angew Chem Int Ed Engl 2024; 63:e202408457. [PMID: 38853142 DOI: 10.1002/anie.202408457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 06/03/2024] [Accepted: 06/04/2024] [Indexed: 06/11/2024]
Abstract
Nitrogen oxides (NOx) are major environmental pollutants and to neutralize this long-term environmental threat, new catalytic methods are needed. Although there are biological denitrification processes involving four different enzymatic reactions to convert nitrate (NO3 -) into dinitrogen (N2), it is unfortunately difficult to apply in industry due to the complexity of the processes. In particular, nitrate is difficult to functionalize because of its chemical stability. Thus, there is no organometallic catalysis to convert nitrate into useful chemicals. Herein, we present a nickel pincer complex that is effective as a bifunctional catalyst to stepwise deoxygenate NO3 - by carbonylation and further through C-N coupling. By using this nickel catalysis, nitrate salts can be selectively transformed into various oximes (>20 substrates) with excellent conversion (>90 %). Here, we demonstrate for the first time that the highly inert nitrate ion can be functionalized to produce useful chemicals by a new organonickel catalysis. Our results show that the NOx conversion and utilization (NCU) technology is a successful pathway for environmental restoration coupled with value-added chemical generation.
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Affiliation(s)
- Sudakar Padmanaban
- Department of Chemistry, Seoul National University, Seoul, 08826, Republic of Korea
| | - Jeewon Chun
- Department of Chemistry, Seoul National University, Seoul, 08826, Republic of Korea
| | - Youngseob Lee
- Department of Chemistry and Research Institute of Physics and Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea
| | - Kyung-Bin Cho
- Department of Chemistry and Research Institute of Physics and Chemistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea
| | - Jonghoon Choi
- Department of Chemistry Education, Chonnam National University, Gwangju, 61186, Republic of Korea
| | - Yunho Lee
- Department of Chemistry, Seoul National University, Seoul, 08826, Republic of Korea
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20
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Zhang M, Fu G, Shi W, Feng X, Lens PNL, Zhang B. Microbial response to the chronic toxicity effect of graphene and graphene oxide nanomaterials within aerobic granular sludge systems. JOURNAL OF HAZARDOUS MATERIALS 2024; 477:135350. [PMID: 39079301 DOI: 10.1016/j.jhazmat.2024.135350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 07/15/2024] [Accepted: 07/26/2024] [Indexed: 08/17/2024]
Abstract
Nanomaterials present in wastewater can pose a significant threat to aerobic granular sludge (AGS) systems. Herein, we found that compared to graphene nanomaterials (G-NMs), the long-term presence (95 days) of graphene oxide nanomaterials (GO-NMs) resulted in an increased proliferation of filamentous bacteria, poorer sedimentation performance (SVI30 of 74.1 mL/g) and smaller average particle size (1224.4 µm) of the AGS. In particular, the GO-NMs posed a more significant inhibitory effect to the total nitrogen removal efficiency of AGS (decreased by 14.3 %), especially for the denitrification process. The substantial accumulation of GO-NMs within the sludge matrix resulted in a higher level of reactive oxygen species in AGS compared to G-NMs, thereby inducing lactate dehydrogenase release, and enhancing superoxide oxidase and catalase activities. Such excessive oxidative stress could potentially result in a significant reduction in the activity of nitrogen metabolism enzymes (e.g., nitrate reductase and nitrite reductase) and the expression of key functional genes (e.g., nirS and nirK). Altogether, compared to G-NMs, prolonged exposure to GO-NMs had a more significant chronic toxicity effect on AGS systems. These findings implied that the presence of G-NMs and GO-NMs is a hidden danger to biological nitrogen removal and should receive more attention.
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Affiliation(s)
- Ming Zhang
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Guokai Fu
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Wenxin Shi
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Xueli Feng
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Piet N L Lens
- UNESCO-IHE, Institute for Water Education, Westvest 7, 2601 DA Delft, the Netherlands
| | - Bing Zhang
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China.
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21
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Paiva B, Laranjinha J, Rocha BS. Do oral and gut microbiota communicate through redox pathways? A novel asset of the nitrate-nitrite-NO pathway. FEBS Lett 2024; 598:2211-2223. [PMID: 38523057 DOI: 10.1002/1873-3468.14859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 02/16/2024] [Accepted: 02/29/2024] [Indexed: 03/26/2024]
Abstract
Nitrate may act as a regulator of •NO bioavailability via sequential reduction along the nitrate-nitrite-NO pathway with widespread health benefits, including a eubiotic effect on the oral and gut microbiota. Here, we discuss the molecular mechanisms of microbiota-host communication through redox pathways, via the production of •NO and oxidants by the family of NADPH oxidases, namely hydrogen peroxide (via Duox2), superoxide radical (via Nox1 and Nox2) and peroxynitrite, which leads to downstream activation of stress responses (Nrf2 and NFkB pathways) in the host mucosa. The activation of Nox2 by microbial metabolites is also discussed. Finally, we propose a new perspective in which both oral and gut microbiota communicate through redox pathways, with nitrate as the pivot linking both ecosystems.
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Affiliation(s)
- Beatriz Paiva
- Faculty of Pharmacy, University of Coimbra, Portugal
| | - João Laranjinha
- Faculty of Pharmacy, University of Coimbra, Portugal
- Center for Neuroscience and Cell Biology, University of Coimbra, Portugal
| | - Bárbara S Rocha
- Faculty of Pharmacy, University of Coimbra, Portugal
- Center for Neuroscience and Cell Biology, University of Coimbra, Portugal
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22
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Feng Y, Yu Y, Shi H, Bai J, Wang L, Yang T, Liu L. Nitrite reductase-mimicking catalysis temporally regulating nitric oxide concentration gradient adaptive for antibacterial therapy. SCIENCE ADVANCES 2024; 10:eadp5935. [PMID: 39213361 PMCID: PMC11364101 DOI: 10.1126/sciadv.adp5935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 07/26/2024] [Indexed: 09/04/2024]
Abstract
The unique bacterial infection microenvironment (IME) usually requires complicated design of nanomaterials to adapt to IME for enhancing antibacterial therapy. Here, an alternative IME adaptative nitrite reductase-mimicking nanozyme is constructed by in situ growth of ultrasmall copper sulfide clusters on the surface of a nanofibrillar lysozyme assembly (NFLA/CuS NHs), which can temporally regulate nitric oxide (NO) gradient concentration to kill bacteria initially and promote tissue regeneration subsequently. Benefiting from a copper nitrite reductase (CuNIR)-inspired structure with CuS cluster as active center and NFLA as skeleton, NFLA/CuS NHs efficiently boost the catalytic reduction of nitrite to NO. The inherent supramolecular fibrillar networks displays excellent bacterial capture capability, facilitating initial high-concentration NO attacks on the bacteria. The subsequent catalytic release of low-concentration NO by NFLA/CuS NHs-mediated nitrite reduction remarkably promotes cell migration and angiogenesis. This work paves the way for dynamically eliminating MDR bacterial infection and promoting tissue regeneration in a simple and smart way through CuNIR-mimicking catalysis.
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Affiliation(s)
- Yonghai Feng
- Institute for Advanced Materials, School of Materials Science and Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu Province, China
| | - Yi Yu
- Institute for Advanced Materials, School of Materials Science and Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu Province, China
| | - Hui Shi
- Institute for Advanced Materials, School of Materials Science and Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu Province, China
| | - Jiaxiang Bai
- Department of Orthopedics, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, Anhui Province, China
| | - Liangliang Wang
- Department of Orthopedics, The Affiliated Changzhou Second People's Hospital of Nanjing Medical University, Changzhou 213003, Jiangsu Province, China
| | - Tianke Yang
- Department of Ophthalmology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, Anhui Province, China
| | - Lei Liu
- Institute for Advanced Materials, School of Materials Science and Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu Province, China
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23
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Zhou J, Zhao J, Song D, Liu J, Xu W, Li J, Wang N. Cascade Electrocatalytic Reduction of Nitrate to Ammonia Using a Heterobimetallic Covalent Organic Framework Composed of Cu-Porphyrin and Co-Bipyridine. Inorg Chem 2024; 63:15177-15185. [PMID: 39088784 DOI: 10.1021/acs.inorgchem.4c02553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2024]
Abstract
The electrocatalytic reduction of nitrate (NO3-) to ammonia (NH3) not only offers an effective solution to environmental problems caused by the accumulation of NO3- but also provides a sustainable alternative to the Haber-Bosch process. However, the conversion of NO3- to NH3 is a complicated process involving multiple steps, leading to a low Faradaic efficiency (FE) for NH3 production. The structural designability of covalent organic frameworks (COFs) renders feasible and precise modulation at the molecular level, facilitating the incorporation of multiple well-defined catalytic sites with different reactivities into a cohesive entity. This promotes the efficiency of the overall reaction through the coupling of multistep reactions. Herein, heterobimetallic CuP-CoBpy was prepared by postmodification, involving the anchoring of cobalt ions to the CuP-Bpy structure. As a result of the cascade effect of the bimetallic sites, CuP-CoBpy achieved an outstanding NH3 yield of 13.9 mg h-1 mgcat.-1 with a high FE of 96.7% at -0.70 V versus the reversible hydrogen electrode and exhibited excellent stability during catalysis. A series of experimental and theoretical studies revealed that the CuP unit facilitates the conversion of NO3- to NO2-, while the CoBpy moiety significantly prompts the reduction of NO2- to NH3. This study demonstrates that tailoring the structural units for the construction of COFs based on each step in the multistep reaction can enhance both the catalytic activity and product selectivity of the overall process.
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Affiliation(s)
- Jing Zhou
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Jiani Zhao
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Dengmeng Song
- College of Chemistry and Chemical Engineering, Xi'an Shiyou University, Xi'an 710065, China
| | - Jiquan Liu
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Wenhua Xu
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Jun Li
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Ning Wang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
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24
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Ghosh P, Warren TH. Get to Know NO. Nat Chem 2024; 16:1382. [PMID: 39117741 DOI: 10.1038/s41557-024-01606-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2024]
Affiliation(s)
- Pokhraj Ghosh
- Department of Chemistry, Michigan State University, East Lansing, MI, USA
| | - Timothy H Warren
- Department of Chemistry, Michigan State University, East Lansing, MI, USA.
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25
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Bhowmik S, Baral B, Rit T, Jha HC, Das AK. Design and synthesis of a nucleobase functionalized peptide hydrogel: in vitro assessment of anti-inflammatory and wound healing effects. NANOSCALE 2024; 16:13613-13626. [PMID: 38958597 DOI: 10.1039/d4nr01149j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
Over the past several years, a significant increase in the expanding field of biomaterial sciences has been observed due to the development of biocompatible materials based on peptide derivatives that have intrinsic therapeutic potential. In this report, we synthesized nucleobase functionalized peptide derivatives (NPs). Hydrogelation in the synthesized NPs was induced by increasing their hydrophobicity with an aromatic moiety. The aggregation behavior of the NPs was analyzed by performing molecular dynamics simulations and DOSY NMR experiments. We performed circular dichroism (CD), thioflavin-T binding and PXRD to characterize the supramolecular aggregation in the NP1 hydrogel. The mechanical strength of the NP1 hydrogel was tested by performing rheological experiments. TEM and SEM experiments were performed to investigate the morphology of the NP1 hydrogel. The biocompatibility of the newly synthesized NP1 hydrogel was investigated using McCoy and A549 cell lines. The hemolytic activity of the NP1 hydrogel was examined in human blood cells. The stability of the newly formed NP1 hydrogel was examined using proteinase K and α-chymotrypsin. The NP1 hydrogel was used for in vitro wound healing. Western blotting, qRT-PCR and DCFDA assay were performed to determine the anti-inflammatory activity of the NP1 hydrogel. The synthesized NP1 hydrogel also exhibits antibacterial efficacy.
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Affiliation(s)
- Sourav Bhowmik
- Department of Chemistry, Indian Institute of Technology Indore, Indore 453552, India.
| | - Budhadev Baral
- Department of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Simrol, Khandwa Road, Indore 453552, India
| | - Tanmay Rit
- Department of Chemistry, Indian Institute of Technology Indore, Indore 453552, India.
| | - Hem Chandra Jha
- Department of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Simrol, Khandwa Road, Indore 453552, India
| | - Apurba K Das
- Department of Chemistry, Indian Institute of Technology Indore, Indore 453552, India.
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26
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Kohl SJ, Sigmund LM, Schmitt M, Greb L. Nitrogen monoxide and calix[4]pyrrolato aluminate: structural constraint enabled NO dimerization. Chem Sci 2024; 15:10803-10809. [PMID: 39027292 PMCID: PMC11253113 DOI: 10.1039/d4sc02378a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 06/15/2024] [Indexed: 07/20/2024] Open
Abstract
The dimerization of nitrogen monoxide (NO) is highly relevant in homo- and heterogeneous biochemical and environmental redox processes, but a broader understanding is challenged by the endergonic nature of this equilibrium. The present work describes NO-dimerization leveraged by structurally constrained aluminum and metal-ligand cooperativity at the anionic calix[4]pyrrolato aluminate(III). Quantum chemical calculations reveal the driving force for N-N bond formation, while reactivity tests shed light on subsequent redox chemistry and NO decomposition at metal surfaces. Inhibiting the dimerization pathway by saturating NO's unpaired electron with a phenyl group (nitrosobenzene) allows trapping the 1,2-adduct as a key intermediate. Elevated temperatures result in an unprecedented and high-yielding rearrangement of the calix[4]pyrrolato ligand scaffold. Kinetic and theoretical studies provide a comprehensive picture of the rearrangement mechanism and delineate systematics for ring modification of the prominent calix[4]pyrrole macrocycle.
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Affiliation(s)
- Senta J Kohl
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Lukas M Sigmund
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Manuel Schmitt
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Lutz Greb
- Anorganisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
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27
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Zhu X, Lin F, Sun J, Li X, Zhu G, Lu Y, Sun L, Wang H. Effects of Weak Electric Fields on the Denitrification Performance of Pseudomonas stutzeri: Insights into Enzymes and Metabolic Pathways. Microorganisms 2024; 12:1218. [PMID: 38930600 PMCID: PMC11205929 DOI: 10.3390/microorganisms12061218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 06/07/2024] [Accepted: 06/12/2024] [Indexed: 06/28/2024] Open
Abstract
Enhanced denitrification has been reported under weak electric fields. However, it is difficult to investigate the mechanism of enhanced denitrification due to the complex interspecific interactions of mixed-culture systems. In this study, Pseudomonas stutzeri, capable of denitrification under anaerobic conditions, was selected for treating low COD/N (2.0, ratio between concentration of chemical oxygen demand and NO3--N) artificial wastewater under constant external voltages of 0.2, 0.4, and 0.6 V. The results revealed that P. stutzeri exhibited the highest efficiency in nitrate reduction at 0.2 V. Moreover, the maximum nitrate removal rate was 15.96 mg/(L·h) among the closed-circuit groups, 19.39% higher than that under the open-circuit group. Additionally, a notable reduction in nitrite accumulation was observed under weak electric fields. Enzyme activity analysis showed that the nitrate reductase activities were significantly increased among the closed-circuit groups, while nitrite reductase activities were inhibited. Transcriptomic analysis indicated that amino acid metabolism, carbohydrate metabolism, and energy metabolism were increased, enhancing the resistance of P. stutzeri to environmental stress and the efficiency of carbon source utilization for denitrification. The current study examined the impacts of weak electric fields on enzyme activities and microbial metabolic pathways and offers valuable insights into the mechanism by which denitrification is enhanced by weak electric fields.
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Affiliation(s)
- Xuyan Zhu
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Feng Lin
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Ji Sun
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Xin Li
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Guangcan Zhu
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Yongze Lu
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Liwei Sun
- School of Energy and Environment, Southeast University, Nanjing 210096, China; (X.Z.); (F.L.); (J.S.); (X.L.); (Y.L.); (L.S.)
| | - Hongyang Wang
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China
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28
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Chen C, Jiang Y, Ren Z, Li M, Wang F, Shan H. Effects of bagasse as a carbon source on biofloc formation, water quality, and microbial community structure in shrimp culture system. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:42144-42159. [PMID: 38862800 DOI: 10.1007/s11356-024-33928-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 06/03/2024] [Indexed: 06/13/2024]
Abstract
As a widely available, low-cost agricultural byproduct, bagasse is a potential solid carbon source and provides microbial attachment as a biofilm carrier. In this study, the effects of bagasse as a carbon source on biofloc formation, water quality, microbial community structure, and nitrogen conversion in a shrimp culture system were explored, and the performance of bagasse bioflocs was assessed. No bagasse was added to the control group (CK), and three bagasse addition groups were set up, with the floc content of the water maintained at 5 mL/L (BF5 group), 10 mL/L (BF10 group), and 15 mL/L (BF15 group). The results showed that bagasse bioflocs formed in the fourth week when bagasse was placed in the culture water, and the surface of bagasse was covered with thick biofilm at that time. The DOC content of the BF15 group was significantly greater than that of the CK group, from 30.31 to 105.06% (P < 0.05), and the DOC increased with increasing bagasse biofloc content. The BF group rapidly converted TAN to NO2--N and then to NO3--N because the accumulation of nitrite nitrogen in the BF15 group occurred 1 week earlier than in the other groups; at the 8th week, the nitrite nitrogen conversion rate of each BF group was close to 100%, which was significantly greater than that of the CK group (P < 0.05). The relative abundances of genes encoding microbial glutamate dehydrogenase and glutamate synthase increased in the bagasse biofloc groups (P < 0.05). The relative abundances of genes from Rhodobacterales and Hyphomicrobiales in each group were greater, but bagasse bioflocs increased the proportion of Hyphomicrobiale. In summary, adding bagasse to the shrimp culture system can form a biofloc system, resulting in the formation of a rich bacterial biofilm on its surface. Bagasse addition not only affects the composition of microbial communities but also accelerates the nitrification process in water. As a result, ammonia and nitrite are converted into nitrate, which is essential for maintaining the stability of the ecosystem balance in aquaculture water.
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Affiliation(s)
- Chaotong Chen
- The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - YiZhuo Jiang
- The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Ziwen Ren
- Shandong Yellow River Delta Marine Technology Co., Ltd., Dongying, 257000, China
| | - Meng Li
- The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Fang Wang
- The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Hongwei Shan
- The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China.
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29
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Karmakar S, Patra S, Pramanik K, Adhikary A, Dey A, Majumdar A. Reactivity of Thiolate and Hydrosulfide with a Mononuclear {FeNO} 7 Complex Featuring a Very High N-O Stretching Frequency. Inorg Chem 2024; 63:8537-8555. [PMID: 38679874 DOI: 10.1021/acs.inorgchem.3c03274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2024]
Abstract
Synthesis, characterization, electronic structure, and redox reactions of a mononuclear {FeNO}7 complex with a very high N-O stretching frequency in solution are presented. Nitrosylation of [(LKP)Fe(DMF)]2+ (1) (LKP = tris((1-methyl-4,5-diphenyl-1H-imidazol-2-yl)methyl)amine) produced a five-coordinate {FeNO}7 complex, [(LKP)Fe(NO)]2+ (2). While complex 2 could accommodate an additional water molecule to generate a six-coordinate {FeNO}7 complex, [(LKP)Fe(NO)(H2O)]2+ (3), the coordinated H2O in 3 dissociates to generate 2 in solution. The molecular structure of 2 features a nearly linear Fe-N-O unit with an Fe-N distance of 1.744(4) Å, N-O distance of 1.162(5) Å, and
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Affiliation(s)
- Soumik Karmakar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Suman Patra
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Koushik Pramanik
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Amit Adhikary
- Department of Chemistry, Technology Campus, University of Calcutta, JD Block, Sector III, Salt Lake, Kolkata 700098, India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
| | - Amit Majumdar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India
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30
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Egas RA, Kurth JM, Boeren S, Sousa DZ, Welte CU, Sánchez-Andrea I. A novel mechanism for dissimilatory nitrate reduction to ammonium in Acididesulfobacillus acetoxydans. mSystems 2024; 9:e0096723. [PMID: 38323850 PMCID: PMC10949509 DOI: 10.1128/msystems.00967-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 12/25/2023] [Indexed: 02/08/2024] Open
Abstract
The biological route of nitrate reduction has important implications for the bioavailability of nitrogen within ecosystems. Nitrate reduction via nitrite, either to ammonium (ammonification) or to nitrous oxide or dinitrogen (denitrification), determines whether nitrogen is retained within the system or lost as a gas. The acidophilic sulfate-reducing bacterium (aSRB) Acididesulfobacillus acetoxydans can perform dissimilatory nitrate reduction to ammonium (DNRA). While encoding a Nar-type nitrate reductase, A. acetoxydans lacks recognized nitrite reductase genes. In this study, A. acetoxydans was cultivated under conditions conducive to DNRA. During cultivations, we monitored the production of potential nitrogen intermediates (nitrate, nitrite, nitric oxide, hydroxylamine, and ammonium). Resting cell experiments were performed with nitrate, nitrite, and hydroxylamine to confirm their reduction to ammonium, and formed intermediates were tracked. To identify the enzymes involved in DNRA, comparative transcriptomics and proteomics were performed with A. acetoxydans growing under nitrate- and sulfate-reducing conditions. Nitrite is likely reduced to ammonia by the previously undescribed nitrite reductase activity of the NADH-linked sulfite reductase AsrABC, or by a putatively ferredoxin-dependent homolog of the nitrite reductase NirA (DEACI_1836), or both. We identified enzymes and intermediates not previously associated with DNRA and nitrosative stress in aSRB. This increases our knowledge about the metabolism of this type of bacteria and helps the interpretation of (meta)genome data from various ecosystems on their DNRA potential and the nitrogen cycle.IMPORTANCENitrogen is crucial to any ecosystem, and its bioavailability depends on microbial nitrogen-transforming reactions. Over the recent years, various new nitrogen-transforming reactions and pathways have been identified, expanding our view on the nitrogen cycle and metabolic versatility. In this study, we elucidate a novel mechanism employed by Acididesulfobacillus acetoxydans, an acidophilic sulfate-reducing bacterium, to reduce nitrate to ammonium. This finding underscores the diverse physiological nature of dissimilatory reduction to ammonium (DNRA). A. acetoxydans was isolated from acid mine drainage, an extremely acidic environment where nitrogen metabolism is poorly studied. Our findings will contribute to understanding DNRA potential and variations in extremely acidic environments.
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Affiliation(s)
- Reinier A. Egas
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
| | - Julia M. Kurth
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
- Microcosm Earth Centre, Philipps-Universität Marburg & Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Sjef Boeren
- Laboratory of Biochemistry, Wageningen University & Research, Wageningen, The Netherlands
| | - Diana Z. Sousa
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
- Centre for Living Technologies, Alliance TU/e, WUR, UU, UMC Utrecht, Utrecht, The Netherlands
| | - Cornelia U. Welte
- Department of Microbiology, Radboud Institute for Biological and Environmental Sciences, Radboud University, Nijmegen, The Netherlands
| | - Irene Sánchez-Andrea
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, The Netherlands
- Department of Environmental Sciences for Sustainability, IE University, Segovia, Spain
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31
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Raucci A, Miglione A, Cimmino W, Cioffi A, Singh S, Spinelli M, Amoresano A, Musile G, Cinti S. Technical Evaluation of a Paper-Based Electrochemical Strip to Measure Nitrite Ions in the Forensic Field. ACS MEASUREMENT SCIENCE AU 2024; 4:136-143. [PMID: 38404486 PMCID: PMC10885323 DOI: 10.1021/acsmeasuresciau.3c00050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 11/20/2023] [Accepted: 11/27/2023] [Indexed: 02/27/2024]
Abstract
Nitrite is a compound used as a food additive for its preservative action and coloring capability, as well as an industrial agent for its antifreezing action and for preventing corrosion, and it is also used as a pharmaceutical in cyanide detoxification therapy. However, even recently, because of its high toxicity, it has been used as a murder and suicidal agent due to its affordability and ready availability. In this technical report, we describe an electrochemical paper-based device for selectively determining nitrite in complex biofluids, such as blood, cadaveric blood, vitreous humor, serum, plasma, and urine. The approach was validated in terms of the linearity of response, selectivity, and sensitivity, and the accuracy of the determination was verified by comparing the results with a chromatographic instrumental method. A linear response was observed in the micromolar range; the sensitivity of the method expressed as the limit of detection was 0.4 μM in buffer measurements. The simplicity of use, the portability of the device, and the performance shown make the approach suitable for detecting nitrite in complex biofluids, including contexts of forensic interest, such as murders or suicides in which nitrite is used as a toxic agent. Limits of detection of ca. 1, 2, 4, 5, 3, and 4 μM were obtained in vitreous humor, urine, serum and plasma, blood, and cadaveric blood, also highlighting a satisfactory accuracy comprised between 91 and 112%.
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Affiliation(s)
- Ada Raucci
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
| | - Antonella Miglione
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
| | - Wanda Cimmino
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
| | - Alessia Cioffi
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
| | - Sima Singh
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
| | - Michele Spinelli
- Department
of Chemical Sciences, University of Naples
Federico II, 80126 Naples, Italy
| | - Angela Amoresano
- Department
of Chemical Sciences, University of Naples
Federico II, 80126 Naples, Italy
| | - Giacomo Musile
- Department
of Diagnostics and Public Health, University
of Verona, P.le Scuro 10, 37134 Verona, Italy
| | - Stefano Cinti
- Department
of Pharmacy, University of Naples “Federico
II”, 80131 Naples, Italy
- BAT
Center—Interuniversity Center for Studies on Bioinspired Agro-Environmental
Technology, University of Naples “Federico
II”, 80055 Naples, Italy
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32
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Wan Y, Li R, Yao K, Peng C, Wang W, Li N, Wang X. Bioelectro-barriers prevent nitrate leaching into groundwater via nitrogen retention. WATER RESEARCH 2024; 249:120988. [PMID: 38070341 DOI: 10.1016/j.watres.2023.120988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 12/04/2023] [Accepted: 12/06/2023] [Indexed: 01/03/2024]
Abstract
Groundwater, the main freshwater resource for humans, has been widely contaminated with nitrate from fertilizers. Here, we report a new and chemical-free strategy to prevent nitrate leaching from soil based on the enrichment of electroactive bacteria, mainly of the genus Geobacter, with bioelectro-barriers, which leads to a nearly 100 % interception of nitrate and partly conserves reactive nitrogen in the form of weakly mobile ammonium by dissimilatory nitrate reduction to ammonium (DNRA). G. sulfurreducens was recognized to efficiently secrete nitrite reductase (NrfA) for rapid DNRA because it lacks nitrate reductase, which inhibits DNRA by competing with nitrite and producing toxic intracellular nitric oxide. With an increase in G. sulfurreducens abundance, near-zero nitrate leaching and 3-fold greater N retention was achieved. Periodic application of weak electricity to the bioelectro-barrier ensured the dominance of G. sulfurreducens in the microbial community and therefore its ability to consistently prevent nitrate leaching. The ability of G. sulfurreducens to intercept nitrate was further demonstrated in more diverse agricultural soils, providing a novel way to prevent nitrate leaching and conserve bioavailable nitrogen in the soil, which has broader implications for both sustainable agriculture and groundwater protection.
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Affiliation(s)
- Yuxuan Wan
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China; School of Civil Engineering, Guangzhou University, No. 230 West Waihuan Road, Panyu District, Guangzhou 510006, China
| | - Ruixiang Li
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China
| | - Kexin Yao
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China
| | - Chenchen Peng
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, TEDA Institute of Biological Sciences and Biotechnology, Nankai University, Tianjin 300457, China
| | - Wei Wang
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, TEDA Institute of Biological Sciences and Biotechnology, Nankai University, Tianjin 300457, China
| | - Nan Li
- School of Environmental Science and Engineering, Tianjin University, No. 92 Weijin Road, Nankai District, Tianjin 300072, China
| | - Xin Wang
- MOE Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, No. 38 Tongyan Road, Jinnan District, Tianjin 300350, China.
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Wang Y, Xu Y, Cheng C, Zhang B, Zhang B, Yu Y. Phase-Regulated Active Hydrogen Behavior on Molybdenum Disulfide for Electrochemical Nitrate-to-Ammonia Conversion. Angew Chem Int Ed Engl 2024; 63:e202315109. [PMID: 38059554 DOI: 10.1002/anie.202315109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Revised: 11/19/2023] [Accepted: 12/07/2023] [Indexed: 12/08/2023]
Abstract
Electrochemical reduction of nitrate waste is promising for environmental remediation and ammonia preparation. This process includes multiple hydrogenation steps, and thus the active hydrogen behavior on the surface of the catalyst is crucial. The crystal phase referred to the atomic arrangements in crystals has a great effect on active hydrogen, but the influence of the crystal phase on nitrate reduction is still unclear. Herein, enzyme-mimicking MoS2 in different crystal phases (1T and 2H) are used as models. The Faradaic efficiency of ammonia reaches ≈90 % over 1T-MoS2 , obviously outperforming that of 2H-MoS2 (27.31 %). In situ Raman spectra and theoretical calculations reveal that 1T-MoS2 produces more active hydrogen on edge S sites at a more positive potential and conducts an effortless pathway from nitrate to ammonia instead of multiple energetically demanding hydrogenation steps (such as *HNO to *HNOH) performed on 2H-MoS2 .
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Affiliation(s)
- Yuting Wang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Yue Xu
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Chuanqi Cheng
- Institute of New Energy Materials, School of Materials Science and Engineering, Tianjin University Tianjin, 300072 (China)
| | - Baoshun Zhang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
- Tianjin University-Asia Silicon Joint Research Center of Ammonia-Hydrogen New Energy, Qinghai, 810007, China
| | - Bin Zhang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Yifu Yu
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
- Tianjin University-Asia Silicon Joint Research Center of Ammonia-Hydrogen New Energy, Qinghai, 810007, China
- Haihe Laboratory of Sustainable Chemical Transformations, Tianjin, 300192, China
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Atta S, Mandal A, Saha R, Majumdar A. Reduction of nitrite to nitric oxide and generation of reactive chalcogen species by mononuclear Fe(II) and Zn(II) complexes of thiolate and selenolate. Dalton Trans 2024; 53:949-965. [PMID: 38126213 DOI: 10.1039/d3dt03768a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
Comparative reactivity of a series of new Zn(II) and Fe(II) compounds, [(Py2ald)M(ER)] (E = S, R = Ph: M = Zn, 1aZn; M = Fe, 1aFe; E = S, R = 2,6-Me2-C6H3: M = Zn, 1bZn; M = Fe, 1bFe; E = Se, R = Ph: M = Zn, 2Zn; M = Fe, 2Fe), and [(Py2ald)M]22+ (M = Zn, 5Zn; M = Fe, 5Fe) is presented. Compound 1aZn could react with nitrite (NO2-) to produce [(Py2ald)Zn(ONO)] (3Zn), which, upon treatment with thiols and PhSeH (proton source), could regenerate either 1aZn/5Zn and 2Zn respectively, along with the production of nitric oxide (NO) where the yield of NO increases in the order tBuSH ≪ PhCH2SH < PhSH < PhSeH. In contrast to this, 1aFe, 2Fe and 5Fe could affect the direct reduction of NO2- in the absence of protons to generate NO and [{(Py2ald)(ONO)Fe}2-μ2-O] (8Fe). Moreover, 8Fe could regenerate 5Fe and 1aFe/2Fe upon treatment with 4 and 6 equiv. of PhEH (E = S/Se), respectively, along with the generation of NO. Finally, a comparative study of the mononuclear Zn(II) and Fe(II) compounds for the transfer of the coordinated thiolate/selenolate and the generation and transfer of reactive sulfur/selenium species (RES-, E = Se, S) to a series of organic substrates has been provided.
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Affiliation(s)
- Sayan Atta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, West Bengal, India.
| | - Amit Mandal
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, West Bengal, India.
| | - Rahul Saha
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, West Bengal, India.
| | - Amit Majumdar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata 700032, West Bengal, India.
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Wang K, Li J, Gu X, Wang H, Li X, Peng Y, Wang Y. How to Provide Nitrite Robustly for Anaerobic Ammonium Oxidation in Mainstream Nitrogen Removal. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:21503-21526. [PMID: 38096379 DOI: 10.1021/acs.est.3c05600] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Innovation in decarbonizing wastewater treatment is urgent in response to global climate change. The practical implementation of anaerobic ammonium oxidation (anammox) treating domestic wastewater is the key to reconciling carbon-neutral management of wastewater treatment with sustainable development. Nitrite availability is the prerequisite of the anammox reaction, but how to achieve robust nitrite supply and accumulation for mainstream systems remains elusive. This work presents a state-of-the-art review on the recent advances in nitrite supply for mainstream anammox, paying special attention to available pathways (forward-going (from ammonium to nitrite) and backward-going (from nitrate to nitrite)), key controlling strategies, and physiological and ecological characteristics of functional microorganisms involved in nitrite supply. First, we comprehensively assessed the mainstream nitrite-oxidizing bacteria control methods, outlining that these technologies are transitioning to technologies possessing multiple selective pressures (such as intermittent aeration and membrane-aerated biological reactor), integrating side stream treatment (such as free ammonia/free nitrous acid suppression in recirculated sludge treatment), and maintaining high activity of ammonia-oxidizing bacteria and anammox bacteria for competing oxygen and nitrite with nitrite-oxidizing bacteria. We then highlight emerging strategies of nitrite supply, including the nitrite production driven by novel ammonia-oxidizing microbes (ammonia-oxidizing archaea and complete ammonia oxidation bacteria) and nitrate reduction pathways (partial denitrification and nitrate-dependent anaerobic methane oxidation). The resources requirement of different mainstream nitrite supply pathways is analyzed, and a hybrid nitrite supply pathway by combining partial nitrification and nitrate reduction is encouraged. Moreover, data-driven modeling of a mainstream nitrite supply process as well as proactive microbiome management is proposed in the hope of achieving mainstream nitrite supply in practical application. Finally, the existing challenges and further perspectives are highlighted, i.e., investigation of nitrite-supplying bacteria, the scaling-up of hybrid nitrite supply technologies from laboratory to practical implementation under real conditions, and the data-driven management for the stable performance of mainstream nitrite supply. The fundamental insights in this review aim to inspire and advance our understanding about how to provide nitrite robustly for mainstream anammox and shed light on important obstacles warranting further settlement.
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Affiliation(s)
- Kaichong Wang
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai 200092, P. R. China
- Shanghai Institute of Pollution Control and Ecological Security, Siping Road, Shanghai 200092, P. R. China
| | - Jia Li
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai 200092, P. R. China
- Shanghai Institute of Pollution Control and Ecological Security, Siping Road, Shanghai 200092, P. R. China
| | - Xin Gu
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai 200092, P. R. China
- Shanghai Institute of Pollution Control and Ecological Security, Siping Road, Shanghai 200092, P. R. China
| | - Han Wang
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai 200092, P. R. China
- Shanghai Institute of Pollution Control and Ecological Security, Siping Road, Shanghai 200092, P. R. China
| | - Xiang Li
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, P. R. China
| | - Yongzhen Peng
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology, Engineering Research Center of Beijing, Beijing University of Technology, Beijing 100124, P. R. China
| | - Yayi Wang
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Siping Road, Shanghai 200092, P. R. China
- Shanghai Institute of Pollution Control and Ecological Security, Siping Road, Shanghai 200092, P. R. China
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36
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Yang S, Wang Y, Xu W, Tian X, Bao M, Yu X. Visible-Light-Driven Iron-Catalyzed Decarboxylative C-N Coupling Reaction of Alkyl Carboxylic Acids with NaNO 2. Org Lett 2023. [PMID: 38054743 DOI: 10.1021/acs.orglett.3c03526] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
An efficient visible-light-driven iron-catalyzed decarboxylative C-N coupling reaction of alkyl carboxylic acids with NaNO2 under mild conditions was developed. The reaction proceeds under photosensitizer-free conditions and features good to excellent yields, broad functional group tolerance, and an easy operation procedure. Preliminary mechanistic investigations showed that visible-light-driven iron catalysis not only achieved oxidative decarboxylation of alkyl carboxylic acids to alkyl radicals but also promoted the reduction of NO2- to NO, thus leading to the C-N radical coupling reaction.
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Affiliation(s)
- Shilei Yang
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
| | - Yi Wang
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
| | - Wenyao Xu
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
| | - Xiao Tian
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
| | - Ming Bao
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
- School of Chemical Engineering, Dalian University of Technology, Panjin, Liaoning 124221, People's Republic of China
| | - Xiaoqiang Yu
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian, Liaoning 116023, People's Republic of China
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37
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Anju BS, Nair NR, Kundu S. Nitrite and Nitric Oxide Interconversion at Mononuclear Copper(II): Insight into the Role of the Red Copper Site in Denitrification. Angew Chem Int Ed Engl 2023; 62:e202311523. [PMID: 37800603 DOI: 10.1002/anie.202311523] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 10/04/2023] [Accepted: 10/06/2023] [Indexed: 10/07/2023]
Abstract
Nitrite (NO2 - ) and nitric oxide (NO) interconversion is crucial for maintaining optimum NO flux in mammalian physiology. Herein we demonstrate that [L2 CuII (nitrite)]+ moieties (in 2 a and 2 b; where, L = Me2 PzPy and Me2 PzQu) with distorted octahedral geometry undergo facile reduction to provide tetrahedral [L2 CuI ]+ (in 3 a and 3 b) and NO in the presence of biologically relevant reductants, such as 4-methoxy-2,6-di-tert-butylphenol (4-MeO-2,6-DTBP, a tyrosine model) and N-benzyl-1,4-dihydronicotinamide (BNAH, a NAD(P)H model). Interestingly, the reaction of excess NO gas with [L2 CuII (MeCN)2 ]2+ (in 1 a) provides a putative {CuNO}10 species, which is effective in mediating the nitrosation of various nucleophiles, such as thiol and amine. Generation of the transient {CuNO}10 species in wet acetonitrile leads to NO2 - as assessed by Griess assay and 14 N/15 N-FTIR analyses. A detailed study reveals that the bidirectional NOx -reactivity, namely, nitrite reductase (NIR) and NO oxidase (NOO), at a common CuII site, is governed by the geometric-preference-driven facile CuII /CuI redox process. Of broader interest, this study not only highlights potential strategies for the design of copper-based catalysts for nitrite reduction, but also strengthens the previous postulates regarding the involvement of red copper proteins in denitrification.
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Affiliation(s)
- Balakrishnan S Anju
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-Tvm) Thiruvananthapuram, 695551, Kerala, India
| | - Neeraja R Nair
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-Tvm) Thiruvananthapuram, 695551, Kerala, India
| | - Subrata Kundu
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-Tvm) Thiruvananthapuram, 695551, Kerala, India
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38
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Peng G, González V, Vázquez E, Lundberg JO, Fadeel B. Two-dimensional molybdenum disulfide nanosheets evoke nitric oxide-dependent antibacterial effects. NANOSCALE 2023; 15:17409-17421. [PMID: 37846587 DOI: 10.1039/d3nr03120a] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2023]
Abstract
Nanomaterials are currently being explored as novel antimicrobial agents. In this study, we first investigated the ability of two-dimensional (2D) molybdenum disulfide (MoS2) nanosheets to trigger neutrophil extracellular traps (NETs) using neutrophil-differentiated HL-60 cells as well as primary human peripheral blood neutrophils. We then addressed whether the MoS2 nanosheets themselves function as antibacterial agents. We found that MoS2 and Na2MoO4 both triggered NETs, as evidenced by the quantification of neutrophil elastase (NE) activity and immunofluorescence staining of extracellular NE, as well as scanning electron microscopy. The release of NETs was found to be nitric oxide (NO)-dependent. We also found that the MoS2 nanosheets but not the soluble salt prompted acellular NO production in the presence of NaNO2. The acellular generation of NO, suggestive of nanozyme properties of the MoS2 nanosheets, was demonstrated by electron paramagnetic resonance analysis. Electrochemical analysis using cyclic voltammetry confirmed the redox transition of the MoS2 nanosheets. Finally, MoS2 nanosheets inhibited the growth of Escherichia coli in the presence of sodium nitrate. Taken together, MoS2 nanosheets triggered cellular effects as well as acellular antibacterial effects, and we provided evidence for nitrite reductase-like properties of MoS2.
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Affiliation(s)
- Guotao Peng
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.
- College of Environmental Science and Engineering, Tongji University, Shanghai, China
| | - Viviana González
- Instituto Regional de Investigación Científica Aplicada, Universidad de Castilla-La Mancha, Ciudad Real, Spain
| | - Ester Vázquez
- Instituto Regional de Investigación Científica Aplicada, Universidad de Castilla-La Mancha, Ciudad Real, Spain
- Facultad de Ciencias y Teconologías Químicas, Universidad de Castilla-La Mancha, Ciudad Real, Spain
| | - Jon O Lundberg
- Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden
| | - Bengt Fadeel
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.
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Li Y, Xiong L, Yu H, Zeng K, Wei Y, Li H, Zeng W, Ji X. Function and distribution of nitrogen-cycling microbial communities in the Napahai plateau wetland. Arch Microbiol 2023; 205:357. [PMID: 37872393 DOI: 10.1007/s00203-023-03695-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 09/27/2023] [Accepted: 09/29/2023] [Indexed: 10/25/2023]
Abstract
Nitrogen is an essential component of living organisms and a major nutrient that limits life on Earth. Until now, freely available nitrogen mainly comes from atmospheric nitrogen, but most organisms rely on bioavailable forms of nitrogen, which depends on the complex network of microorganisms with a wide variety of metabolic functions. Microbial-mediated nitrogen cycling contributes to the biogeochemical cycling of wetlands, but its specific microbial abundance, composition, and distribution need to be studied. Based on the metagenomic data, we described the composition and functional characteristics of microbial nitrogen cycle-related genes in the Napahai plateau wetland. Six nitrogen cycling pathways existed, such as dissimilatory nitrate reduction, denitrification, nitrogen fixation, nitrification, anammox, and nitrate assimilation. Most genes related to the nitrogen cycling in this region come from bacteria, mainly from Proteobacteria and Acidobacteria. Habitat types and nitrogen cycle-related genes largely explained the relative abundance of total nitrogen pathways. Phylogenetic trees were constructed based on nitrogen cycle-related genes from different habitats and sources, combined with PCoA analysis, most of them clustered separately, indicating richness and uniqueness. Some microbial groups seemed to be special or general in the nitrogen cycling. In conclusion, it suggested that microorganisms regulated the N cycling process, and may lead to N loss throughout the wetland, thus providing a basis for further elucidation of the microbial regulation of N cycling processes and the Earth's elemental cycles.
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Affiliation(s)
- Yanmei Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Lingling Xiong
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Hang Yu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Kun Zeng
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Yunlin Wei
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Haiyan Li
- Medical School, Kunming University of Science and Technology, Kunming, 650500, China
| | - Weikun Zeng
- School of Medicine, Kunming University, Kunming, 650214, China
| | - Xiuling Ji
- Medical School, Kunming University of Science and Technology, Kunming, 650500, China.
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40
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Kolliyedath G, Chattopadhyay T, Mondal A, Panangattu A, Muralikrishnan G, Kundu S. Modeling Reactivity of Nitrite and Nitrous Acid at a Phenolate Bridged Dizinc(II) Site: Insights into NO Signaling at Zinc. Chemistry 2023; 29:e202301409. [PMID: 37492966 DOI: 10.1002/chem.202301409] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 07/27/2023]
Abstract
Although nitrite-to-NO transformation at various transition metals including Fe and Cu are relatively well explored, examples of such a reaction at the redox-inactive zinc(II) site are limited. The present report aims to gain insights into the reactivity of nitrite anions, nitrous acid (HONO), and organonitrite (RONO) at a dizinc(II) site. A phenolate-bridged dizinc(II)-aqua complex [LH ZnII (OH2 )]2 (ClO4 )2 (1H -Aq, where LH =tridentate N,N,O-donor monoanionic ligand) is illustrated to react with t BuONO to provide a metastable arene-nitrosonium charge-transfer complex 2H . UV-vis, FTIR, multinuclear NMR, and elemental analyses suggests the presence of a 2 : 1 arene-nitrosonium moiety. Furthermore, the reactivity of a structurally characterized zinc(II)-nitrite complex [LH ZnII (ONO)]2 (1H -ONO) with a proton-source demonstrates HONO reactivity at the dizinc(II) site. Reactivity of both RONO (R=alkyl/H) at the phenolate-bridged dizinc(II) site provides NO+ charge-transfer complex 2H . Subsequently, the reactions of 2H with exogenous reductants (such as ferrocene, thiol, phenol, and catechol) have been illustrated to generate NO. In addition, NO yielding reactivity of [LH ZnII (ONO)]2 (1H -ONO) in the presence of the above-mentioned reductants have been compared with the reactions of complex 2H . Thus, this report sheds light on the transformations of NO2 - /RONO (R=alkyl/H) to NO/NO+ at the redox-inactive zinc(II) coordination motif.
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Affiliation(s)
- Gayathri Kolliyedath
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Taraknath Chattopadhyay
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Aditesh Mondal
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Aiswarya Panangattu
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Girish Muralikrishnan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
| | - Subrata Kundu
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram (IISER-TVM), Thiruvananthapuram, 695551, India
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41
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Sahana T, Valappil AK, Amma ASPR, Kundu S. NO Generation from Nitrite at Zinc(II): Role of Thiol Persulfidation in the Presence of Sulfane Sulfur. ACS ORGANIC & INORGANIC AU 2023; 3:246-253. [PMID: 37810413 PMCID: PMC10557059 DOI: 10.1021/acsorginorgau.3c00004] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 05/30/2023] [Accepted: 05/31/2023] [Indexed: 10/10/2023]
Abstract
Nitrite-to-NO transformation is of prime importance due to its relevance in mammalian physiology. Although such a one-electron reductive transformation at various redox-active metal sites (e.g., Cu and Fe) has been illustrated previously, the reaction at the [ZnII] site in the presence of a sacrificial reductant like thiol has been reported to be sluggish and poorly understood. Reactivity of [(Bn3Tren)ZnII-ONO](ClO4) (1), a nitrite-bound model of the tripodal active site of carbonic anhydrase (CA), toward various organic probes, such as 4-tert-butylbenzylthiol (tBuBnSH), 2,4-di-tert-butylphenol (2,4-DTBP), and 1-fluoro-2,4-dinitrobenzene (F-DNB), reveals that the ONO-moiety in the [ZnII]-nitrite coordination motif of complex 1 acts as a mild electrophile. tBuBnSH reacts mildly with nitrite at a [ZnII] site to provide S-nitrosothiol tBuBnSNO prior to the release of NO in 10% yield, whereas the phenolic substrate 2,4-DTBP does not yield the analogous O-nitrite compound (ArONO). The presence of sulfane sulfur (S0) species such as elemental sulfur (S8) and organic polysulfides (tBuBnSnBntBu) during the reaction of tBuBnSH and [ZnII]-nitrite (1) assists the nitrite-to-NO conversion to provide NO yields of 65% (for S8) and 76% (for tBuBnSnBntBu). High-resolution mass spectrometry (HRMS) analyses on the reaction of [ZnII]-nitrite (1), tBuBnSH, and S8 depict the formation of zinc(II)-persulfide species [(Bn3Tren)ZnII-Sn-BntBu]+ (where n = 2, 3, 4, 5, and 6). Trapping of the persulfide species (tBuBnSS-) with 1-fluoro-2,4-dinitrobenzene (F-DNB) confirms its intermediacy. The significantly higher nucleophilicity of persulfide species (relative to thiol/thiolate) is proposed to facilitate the reaction with the mildly electrophilic [ZnII]-nitrite (1) complex. Complementary analyses, including multinuclear NMR, electrospray ionization-MS, UV-vis, and trapping of reactive S-species, provide mechanistic insights into the sulfane sulfur-assisted reactions between thiol and nitrite at the tripodal [ZnII]-site. These findings suggest the critical influential roles of various reactive sulfur species, such as sulfane sulfur and persulfides, in the nitrite-to-NO conversion.
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Affiliation(s)
- Tuhin Sahana
- School of Chemistry, Indian
Institute of Science Education and Research Thiruvananthapuram
(IISER-TVM), Thiruvananthapuram 695551, India
| | - Adwaith K. Valappil
- School of Chemistry, Indian
Institute of Science Education and Research Thiruvananthapuram
(IISER-TVM), Thiruvananthapuram 695551, India
| | - Anaswar S. P. R. Amma
- School of Chemistry, Indian
Institute of Science Education and Research Thiruvananthapuram
(IISER-TVM), Thiruvananthapuram 695551, India
| | - Subrata Kundu
- School of Chemistry, Indian
Institute of Science Education and Research Thiruvananthapuram
(IISER-TVM), Thiruvananthapuram 695551, India
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42
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Kametani Y, Ikeda K, Yoshizawa K, Shiota Y. Mechanistic Study of Reduction of Nitrite to NO by the Copper(II) Complex: Different Concerted Proton-Electron Transfer Reactivity between Nitrite and Nitro Complexes. Inorg Chem 2023; 62:13765-13774. [PMID: 37590095 DOI: 10.1021/acs.inorgchem.3c01383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/19/2023]
Abstract
The literature contains numerous reports of copper complexes for nitrite (NO2-) reduction. However, details of how protons and electrons arrive and how nitric oxide (NO) is released remain unknown. The influence of the coordination mode of nitrite on reactivity is also under debate. Kundu and co-workers have reported nitrite reduction by a copper(II) complex [J. Am. Chem. Soc. 2020, 142, 1726-1730]. In their report, the copper(II) complex reduced nitrite using a phenol derivative as a reductant, resulting in NO, a hydroxyl copper(II) complex, and the corresponding biphenol. Also, the involvement of proton-coupled electron transfer was proposed by mechanistic studies. Herein, density functional theory calculations were performed to determine a mechanism for reduction of nitrite by a copper(II) complex. As a result of geometry optimization of an initial complex, two possible structures were obtained: Cu-ONO and Cu-NO2. Two possible reaction pathways initiated from Cu-ONO or Cu-NO2 were then considered. The calculation results indicated that the Cu-ONO pathway is energetically favorable. When changes in the electronic structure were considered, both pathways were found to involve concerted proton-electron transfer (CPET). In addition, an intrinsic reaction coordinate analysis revealed that the two pathways were achieved by different types of CPET. Furthermore, an intrinsic bond orbital analysis clearly indicated that, in the Cu-ONO pathway, the chemical events involved proceeded concertedly yet asynchronously.
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Affiliation(s)
- Yohei Kametani
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kei Ikeda
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yoshihito Shiota
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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Fujisawa K, Kataoka T, Terashima K, Kurihara H, de Santis Gonçalves F, Lehnert N. Coordinatively Unsaturated Nickel Nitroxyl Complex: Structure, Physicochemical Properties, and Reactivity toward Dioxygen. Molecules 2023; 28:6206. [PMID: 37687034 PMCID: PMC10489029 DOI: 10.3390/molecules28176206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 08/17/2023] [Accepted: 08/21/2023] [Indexed: 09/10/2023] Open
Abstract
For its important roles in biology, nitrogen monoxide (·NO) has become one of the most studied and fascinating molecules in chemistry. ·NO itself acts as a "noninnocent" or "redox active" ligand to transition metal ions to give metal-NO (M-NO) complexes. Because of this uncertainty due to redox chemistry, the real description of the electronic structure of the M-NO unit requires extensive spectroscopic and theoretical studies. We previously reported the Ni-NO complex with a hindered N3 type ligand [Ni(NO)(L3)] (L3- denotes hydrotris(3-tertiary butyl-5-isopropyl-1-pyrazolyl)borate anion), which contains a high-spin (hs) nickel(II) center and a coordinated 3NO-. This complex is very stable toward dioxygen due to steric protection of the nickel(II) center. Here, we report the dioxygen reactivity of a new Ni-NO complex, [Ni(NO)(I)(L1″)], with a less hindered N2 type bis(pyrazolyl)methane ligand, which creates a coordinatively unsaturated ligand environment about the nickel center. Here, L1″ denotes bis(3,5-diisopropyl-1-pyrazolyl)methane. This complex is also described as a hs-nickel(II) center with a bound 3NO-, based on spectroscopic and theoretical studies. Unexpectedly, the reaction of [Ni(NO)(I)(L1″)] with O2 yielded [Ni(κ2-O2N)(L1″)2](I3), with the oxidation of both 3NO- and the I- ion to yield NO2- and I3-. Both complexes were characterized by X-ray crystallography, IR, and UV-Vis spectroscopy and theoretical calculations.
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Affiliation(s)
- Kiyoshi Fujisawa
- Department of Chemistry, Ibaraki University, Mito 310-8512, Ibaraki, Japan
| | - Taisei Kataoka
- Department of Chemistry, Ibaraki University, Mito 310-8512, Ibaraki, Japan
| | - Kohei Terashima
- Department of Chemistry, Ibaraki University, Mito 310-8512, Ibaraki, Japan
| | - Haruka Kurihara
- Department of Chemistry, Ibaraki University, Mito 310-8512, Ibaraki, Japan
| | - Felipe de Santis Gonçalves
- Department of Chemistry and Department of Biophysics, University of Michigan, 930 N. University Avenue, Ann Arbor, MI 48109, USA;
| | - Nicolai Lehnert
- Department of Chemistry and Department of Biophysics, University of Michigan, 930 N. University Avenue, Ann Arbor, MI 48109, USA;
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van Langevelde P, Engbers S, Buda F, Hetterscheid DGH. Elucidation of the Electrocatalytic Nitrite Reduction Mechanism by Bio-Inspired Copper Complexes. ACS Catal 2023; 13:10094-10103. [PMID: 37560187 PMCID: PMC10407843 DOI: 10.1021/acscatal.3c01989] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 06/26/2023] [Indexed: 08/11/2023]
Abstract
Mononuclear copper complexes relevant to the active site of copper nitrite reductases (CuNiRs) are known to be catalytically active for the reduction of nitrite. Yet, their catalytic mechanism has thus far not been resolved. Here, we provide a complete description of the electrocatalytic nitrite reduction mechanism of a bio-inspired CuNiR catalyst Cu(tmpa) (tmpa = tris(2-pyridylmethyl)amine) in aqueous solution. Through a combination of electrochemical studies, reaction kinetics, and density functional theory (DFT) computations, we show that the protonation steps take place in a stepwise manner and are decoupled from electron transfer. The rate-determining step is a general acid-catalyzed protonation of a copper-ligated nitrous acid (HNO2) species. In view of the growing urge to convert nitrogen-containing compounds, this work provides principal reaction parameters for efficient electrochemical nitrite reduction. This contributes to the investigation and development of nitrite reduction catalysts, which is crucial to restore the biogeochemical nitrogen cycle.
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Affiliation(s)
| | - Silène Engbers
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
| | - Francesco Buda
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
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Maia LB. Bringing Nitric Oxide to the Molybdenum World-A Personal Perspective. Molecules 2023; 28:5819. [PMID: 37570788 PMCID: PMC10420851 DOI: 10.3390/molecules28155819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 07/29/2023] [Accepted: 07/30/2023] [Indexed: 08/13/2023] Open
Abstract
Molybdenum-containing enzymes of the xanthine oxidase (XO) family are well known to catalyse oxygen atom transfer reactions, with the great majority of the characterised enzymes catalysing the insertion of an oxygen atom into the substrate. Although some family members are known to catalyse the "reverse" reaction, the capability to abstract an oxygen atom from the substrate molecule is not generally recognised for these enzymes. Hence, it was with surprise and scepticism that the "molybdenum community" noticed the reports on the mammalian XO capability to catalyse the oxygen atom abstraction of nitrite to form nitric oxide (NO). The lack of precedent for a molybdenum- (or tungsten) containing nitrite reductase on the nitrogen biogeochemical cycle contributed also to the scepticism. It took several kinetic, spectroscopic and mechanistic studies on enzymes of the XO family and also of sulfite oxidase and DMSO reductase families to finally have wide recognition of the molybdoenzymes' ability to form NO from nitrite. Herein, integrated in a collection of "personal views" edited by Professor Ralf Mendel, is an overview of my personal journey on the XO and aldehyde oxidase-catalysed nitrite reduction to NO. The main research findings and the path followed to establish XO and AO as competent nitrite reductases are reviewed. The evidence suggesting that these enzymes are probable players of the mammalian NO metabolism is also discussed.
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Affiliation(s)
- Luisa B Maia
- LAQV, REQUIMTE, Department of Chemistry, NOVA School of Science and Technology (FCT NOVA), 2829-516 Caparica, Portugal
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He W, Chandra S, Quast T, Varhade S, Dieckhöfer S, Junqueira JRC, Gao H, Seisel S, Schuhmann W. Enhanced Nitrate-to-Ammonia Efficiency over Linear Assemblies of Copper-Cobalt Nanophases Stabilized by Redox Polymers. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2303050. [PMID: 37235856 DOI: 10.1002/adma.202303050] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Revised: 05/13/2023] [Indexed: 05/28/2023]
Abstract
Renewable electricity-powered nitrate (NO3 - ) reduction reaction (NO3 RR) offers a net-zero carbon route to the realization of high ammonia (NH3 ) productivity. However, this route suffers from low energy efficiency (EE, with a half-cell EE commonly <36%), since high overpotentials are required to overcome the weak NO3 - binding affinity and sluggish NO3 RR kinetics. To alleviate this, a rational catalyst design strategy that involves the linear assembly of sub-5 nm Cu/Co nanophases into sub-20 nm thick nanoribbons is suggested. The theoretical and experimental studies show that the Cu-Co nanoribbons, similar to enzymes, enable strong NO3 - adsorption and rapid tandem catalysis of NO3 - to NH3 , owing to their richly exposed binary phase boundaries and adjacent Cu-Co sites at sub-5 nm distance. In situ Raman spectroscopy further reveals that at low applied overpotentials, the Cu/Co nanophases are rapidly activated and subsequently stabilized by a specifically designed redox polymer that in situ scavenges intermediately formed highly oxidative nitrogen dioxide (NO2 ). As a result, a stable NO3 RR with a current density of ≈450 mA cm-2 is achieved, a Faradaic efficiency of >97% for the formation of NH3 , and an unprecedented half-cell EE of ≈42%.
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Affiliation(s)
- Wenhui He
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Shubhadeep Chandra
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Thomas Quast
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Swapnil Varhade
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Stefan Dieckhöfer
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - João R C Junqueira
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Huimin Gao
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130012, P. R. China
| | - Sabine Seisel
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
| | - Wolfgang Schuhmann
- Analytical Chemistry-Center for Electrochemical Sciences (CES), Faculty of Chemistry and Biochemistry, Ruhr University Bochum, Universitätsstr. 150, D-44780, Bochum, Germany
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Sarkar A, Bhakta S, Chattopadhyay S, Dey A. Role of distal arginine residue in the mechanism of heme nitrite reductases. Chem Sci 2023; 14:7875-7886. [PMID: 37502318 PMCID: PMC10370594 DOI: 10.1039/d3sc01777j] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 06/14/2023] [Indexed: 07/29/2023] Open
Abstract
Heme nitrite reductases reduce NO2- by 1e-/2H+ to NO or by 6e-/8H+ to NH4+ which are key steps in the global nitrogen cycle. Second-sphere residues, such as arginine (with a guanidine head group), are proposed to play a key role in the reaction by assisting substrate binding and hydrogen bonding and by providing protons to the active site for the reaction. The reactivity of an iron porphyrin with a NO2- covalently attached to a guanidinium arm in its 2nd sphere was investigated to understand the role of arginine residues in the 2nd sphere of heme nitrite reductases. The presence of the guanidinium residue allows the synthetic ferrous porphyrin to reduce NO2- and produce a ferrous nitrosyl species ({FeNO}7), where the required protons are provided by the guanidinium group in the 2nd sphere. However, in the presence of additional proton sources in solution, the reaction of ferrous porphyrin with NO2- results in the formation of ferric porphyrin and the release of NO. Spectroscopic and kinetic data indicated that re-protonation of the guanidine group in the 2nd sphere by an external proton source causes NO to dissociate from a ferric nitrosyl species ({FeNO}6) at rates similar to those observed for enzymatic sites. This re-protonation of the guanidine group mimics the proton recharge mechanism in the active site of NiR. DFT calculations indicated that the lability of the Fe-NO bond in the {FeNO}6 species is derived from the greater binding affinity of anions (e.g. NO2-) to the ferric center relative to neutral NO due to hydrogen bonding and electrostatic interaction of these bound anions with the protonated guanidium group in the 2nd sphere. The reduced {FeNO}7 species, once formed, is not affected significantly by the re-protonation of the guanidine residue. These results provide direct insight into the role of the 2nd sphere arginine residue present in the active sites of heme-based NiRs in determining the fate of NO2- reduction. Specifically, the findings using the synthetic model suggest that rapid re-protonation of these arginine residues may trigger the dissociation of NO from the {FeNO}6, which may also be the case in the protein active site.
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Affiliation(s)
- Ankita Sarkar
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S.C. Mullick Road Kolkata WB 700032 India
| | - Snehadri Bhakta
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S.C. Mullick Road Kolkata WB 700032 India
| | - Samir Chattopadhyay
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S.C. Mullick Road Kolkata WB 700032 India
| | - Abhishek Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S.C. Mullick Road Kolkata WB 700032 India
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Van Brempt N, Sgammato R, Beirinckx Q, Hammerschmid D, Sobott F, Dewilde S, Moens L, Herrebout W, Johannessen C, Van Doorslaer S. The effect of pH and nitrite on the haem pocket of GLB-33, a globin-coupled neuronal transmembrane receptor of Caenorhabditis elegans. BIOCHIMICA ET BIOPHYSICA ACTA. PROTEINS AND PROTEOMICS 2023; 1871:140913. [PMID: 37004900 DOI: 10.1016/j.bbapap.2023.140913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 03/25/2023] [Accepted: 03/28/2023] [Indexed: 04/03/2023]
Abstract
Out of the 34 globins in Caenorhabditis elegans, GLB-33 is a putative globin-coupled transmembrane receptor with a yet unknown function. The globin domain (GD) contains a particularly hydrophobic haem pocket, that rapidly oxidizes to a low-spin hydroxide-ligated haem state at physiological pH. Moreover, the GD has one of the fastest nitrite reductase activity ever reported for globins. Here, we use a combination of electronic circular dichroism, resonance Raman and electron paramagnetic resonance (EPR) spectroscopy with mass spectrometry to study the pH dependence of the ferric form of the recombinantly over-expressed GD in the presence and absence of nitrite. The competitive binding of nitrite and hydroxide is examined as well as nitrite-induced haem modifications at acidic pH. Comparison of the spectroscopic results with data from other haem proteins allows to deduce the important effect of Arg at position E10 in stabilization of exogenous ligands. Furthermore, continuous-wave and pulsed EPR indicate that ligation of nitrite occurs in a nitrito mode at pH 5.0 and above. At pH 4.0, an additional formation of a nitro-bound haem form is observed along with fast formation of a nitri-globin.
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Affiliation(s)
- Niels Van Brempt
- Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium; Department of Biomedical Sciences, University of Antwerp, 2610 Antwerp, Belgium
| | - Roberta Sgammato
- Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | - Quinten Beirinckx
- Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | | | - Frank Sobott
- Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | - Sylvia Dewilde
- Department of Biomedical Sciences, University of Antwerp, 2610 Antwerp, Belgium
| | - Luc Moens
- Department of Biomedical Sciences, University of Antwerp, 2610 Antwerp, Belgium
| | - Wouter Herrebout
- Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
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49
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Harland JB, Samanta S, Lehnert N. Bacterial nitric oxide reductase (NorBC) models employing click chemistry. J Inorg Biochem 2023; 246:112280. [PMID: 37352656 DOI: 10.1016/j.jinorgbio.2023.112280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 05/15/2023] [Accepted: 05/30/2023] [Indexed: 06/25/2023]
Abstract
Bacterial NO Reductase (NorBC or cNOR) is a membrane-bound enzyme found in denitrifying bacteria that catalyzes the two-electron reduction of NO to N2O and water. The mechanism by which NorBC operates is highly debated, due to the fact that this enzyme is difficult to work with, and no intermediates of the NO reduction reaction could have been identified so far. The unique active site of NorBC consists of a heme b3/non-heme FeB diiron center. Synthetic model complexes provide the opportunity to obtain insight into possible mechanistic alternatives for this enzyme. In this paper, we present three new synthetic model systems for NorBC, consisting of a tetraphenylporphyrin-derivative clicked to modified BMPA-based ligands (BMPA = bis(methylpyridyl)amine) that model the non-heme site in the enzyme. These complexes have been characterized by EPR, IR and UV-Vis spectroscopy. The reactivity with NO was then investigated, and it was found that the complex with the BMPA-carboxylate ligand as the non-heme component has a very low affinity for NO at the non-heme iron site. If the carboxylate functional group is replaced with a phenolate or pyridine group, reactivity is restored and formation of a diiron dinitrosyl complex was observed. Upon one-electron reduction of the nitrosylated complexes, following the semireduced pathway for NO reduction, formation of dinitrosyl iron complexes (DNICs) was observed in all three cases, but no N2O could be detected.
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Affiliation(s)
- Jill B Harland
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Subhra Samanta
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Nicolai Lehnert
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States.
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50
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Ghosh P, Stauffer M, Ahmed ME, Bertke JA, Staples RJ, Warren TH. Thiol and H 2S-Mediated NO Generation from Nitrate at Copper(II). J Am Chem Soc 2023; 145:12007-12012. [PMID: 37224264 PMCID: PMC10367543 DOI: 10.1021/jacs.3c00394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Reduction of nitrate is an essential, yet challenging chemical task required to manage this relatively inert oxoanion in the environment and biology. We show that thiols, ubiquitous reductants in biology, convert nitrate to nitric oxide at a Cu(II) center under mild conditions. The β-diketiminato complex [Cl2NNF6]Cu(κ2-O2NO) engages in O-atom transfer with various thiols (RSH) to form the corresponding copper(II) nitrite [CuII](κ2-O2N) and sulfenic acid (RSOH). The copper(II) nitrite further reacts with RSH to give S-nitrosothiols RSNO and [CuII]2(μ-OH)2 en route to NO formation via [CuII]-SR intermediates. The gasotransmitter H2S also reduces nitrate at copper(II) to generate NO, providing a lens into NO3-/H2S crosstalk. The interaction of thiols with nitrate at copper(II) releases a cascade of N- and S-based signaling molecules in biology.
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Affiliation(s)
- Pokhraj Ghosh
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C. 20057, United States
| | - Molly Stauffer
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C. 20057, United States
| | - Md Estak Ahmed
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C. 20057, United States
| | - Jeffery A Bertke
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C. 20057, United States
| | - Richard J Staples
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Timothy H Warren
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department of Chemistry, Georgetown University, Box 571227-1227, Washington, D. C. 20057, United States
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