1
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De PS, Theilmann J, Raguin A. A detailed sensitivity analysis identifies the key factors influencing the enzymatic saccharification of lignocellulosic biomass. Comput Struct Biotechnol J 2024; 23:1005-1015. [PMID: 38420218 PMCID: PMC10900831 DOI: 10.1016/j.csbj.2024.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/09/2024] [Accepted: 01/14/2024] [Indexed: 03/02/2024] Open
Abstract
Corn stover is the most abundant form of crop residue that can serve as a source of lignocellulosic biomass in biorefinery approaches, for instance for the production of bioethanol. In such biorefinery processes, the constituent polysaccharide biopolymers are typically broken down into simple monomeric sugars by enzymatic saccharification, for further downstream fermentation into bioethanol. However, the recalcitrance of this material to enzymatic saccharification invokes the need for innovative pre-treatment methods to increase sugar conversion yield. Here, we focus on experimental glucose conversion time-courses for corn stover lignocellulose that has been pre-treated with different acid-catalysed processes and intensities. We identify the key parameters that determine enzymatic saccharification dynamics by performing a Sobol's sensitivity analysis on the comparison between the simulation results from our complex stochastic biophysical model, and the experimental data that we accurately reproduce. We find that the parameters relating to cellulose crystallinity and those associated with the cellobiohydrolase activity are predominantly driving the enzymatic saccharification dynamics. We confirm our computational results using mathematical calculations for a purely cellulosic substrate. On the one hand, having identified that only five parameters drastically influence the saccharification dynamics allows us to reduce the dimensionality of the parameter space (from nineteen to five parameters), which we expect will significantly speed up our fitting algorithm for comparison of experimental and simulated saccharification time-courses. On the other hand, these parameters directly highlight key targets for experimental endeavours in the optimisation of pre-treatment and saccharification conditions. Finally, this systematic and two-fold theoretical study, based on both mathematical and computational approaches, provides experimentalists with key insights that will support them in rationalising their complex experimental results.
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Affiliation(s)
- Partho Sakha De
- Institute for Computational Cell Biology, Heinrich Heine University, Universitätsstr. 1, Düsseldorf, 40225, NRW, Germany
- Bioeconomy Science Center (BioSC), c/o Forschungszentrum Jülich, Jülich, 52425, NRW, Germany
| | - Jasmin Theilmann
- Institute for Computational Cell Biology, Heinrich Heine University, Universitätsstr. 1, Düsseldorf, 40225, NRW, Germany
| | - Adélaïde Raguin
- Institute for Computational Cell Biology, Heinrich Heine University, Universitätsstr. 1, Düsseldorf, 40225, NRW, Germany
- Bioeconomy Science Center (BioSC), c/o Forschungszentrum Jülich, Jülich, 52425, NRW, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Universitätsstr. 1, Düsseldorf, 40225, NRW, Germany
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2
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Park S, Ding SY. Five amino acid mismatches in the zinc-finger domains of Cellulose Synthase 5 and Cellulose Synthase 6 cooperatively modulate their functional properties by controlling homodimerization in Arabidopsis. PLANT MOLECULAR BIOLOGY 2024; 114:76. [PMID: 38888655 DOI: 10.1007/s11103-024-01471-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Accepted: 05/23/2024] [Indexed: 06/20/2024]
Abstract
Cellulose synthase 5 (CESA5) and CESA6 are known to share substantial functional overlap. In the zinc-finger domain (ZN) of CESA5, there are five amino acid (AA) mismatches when compared to CESA6. These mismatches in CESA5 were replaced with their CESA6 counterparts one by one until all were replaced, generating nine engineered CESA5s. Each N-terminal enhanced yellow fluorescent protein-tagged engineered CESA5 was introduced to prc1-1, a cesa6 null mutant, and resulting mutants were subjected to phenotypic analyses. We found that five single AA-replaced CESA5 proteins partially rescue the prc1-1 mutant phenotypes to different extents. Multi-AA replaced CESA5s further rescued the mutant phenotypes in an additive manner, culminating in full recovery by CESA5G43R + S49T+S54P+S80A+Y88F. Investigations in cellulose content, cellulose synthase complex (CSC) motility, and cellulose microfibril organization in the same mutants support the results of the phenotypic analyses. Bimolecular fluorescence complementation assays demonstrated that the level of homodimerization in every engineered CESA5 is substantially higher than CESA5. The mean fluorescence intensity of CSCs carrying each engineered CESA5 fluctuates with the degree to which the prc1-1 mutant phenotypes are rescued by introducing a corresponding engineered CESA5. Taken together, these five AA mismatches in the ZNs of CESA5 and CESA6 cooperatively modulate the functional properties of these CESAs by controlling their homodimerization capacity, which in turn imposes proportional changes on the incorporation of these CESAs into CSCs.
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Affiliation(s)
- Sungjin Park
- Department of Plant Biology, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA
| | - Shi-You Ding
- Department of Plant Biology, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA.
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3
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Sionkowski P, Kruszewska N, Kreitschitz A, Gorb SN, Domino K. Application of Recurrence Plot Analysis to Examine Dynamics of Biological Molecules on the Example of Aggregation of Seed Mucilage Components. ENTROPY (BASEL, SWITZERLAND) 2024; 26:380. [PMID: 38785629 PMCID: PMC11119629 DOI: 10.3390/e26050380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 04/24/2024] [Accepted: 04/26/2024] [Indexed: 05/25/2024]
Abstract
The goal of the research is to describe the aggregation process inside the mucilage produced by plant seeds using molecular dynamics (MD) combined with time series algorithmic analysis based on the recurrence plots. The studied biological molecules model is seed mucilage composed of three main polysaccharides, i.e. pectins, hemicellulose, and cellulose. The modeling of biological molecules is based on the assumption that a classical-quantum passage underlies the aggregation process in the mucilage, resulting from non-covalent interactions, as they affect the macroscopic properties of the system. The applied recurrence plot approach is an important tool for time series analysis and data mining dedicated to analyzing time series data originating from complex, chaotic systems. In the current research, we demonstrated that advanced algorithmic analysis of seed mucilage data can reveal some features of the dynamics of the system, namely temperature-dependent regions with different dynamics of increments of a number of hydrogen bonds and regions of stable oscillation of increments of a number of hydrophobic-polar interactions. Henceforth, we pave the path for automatic data-mining methods for the analysis of biological molecules with the intermediate step of the application of recurrence plot analysis, as the generalization of recurrence plot applications to other (biological molecules) datasets is straightforward.
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Affiliation(s)
- Piotr Sionkowski
- Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Bałtycka 5, 44-100 Gliwice, Poland; (P.S.); (K.D.)
| | - Natalia Kruszewska
- Group of Modeling of Physicochemical Processes, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 85-796 Bydgoszcz, Poland
| | - Agnieszka Kreitschitz
- Department of Plant Developmental Biology, University of Wrocław, ul. Kanonia 6/8, 50-328 Wrocław, Poland;
| | - Stanislav N. Gorb
- Department of Functional Morphology and Biomechanics, Kiel University, Am Botanischen Garten 1-9, D-24098 Kiel, Germany;
| | - Krzysztof Domino
- Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Bałtycka 5, 44-100 Gliwice, Poland; (P.S.); (K.D.)
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4
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Saffer AM, Baskin TI, Verma A, Stanislas T, Oldenbourg R, Irish VF. Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 116:855-870. [PMID: 37548081 PMCID: PMC10592269 DOI: 10.1111/tpj.16414] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 07/19/2023] [Indexed: 08/08/2023]
Abstract
Plant cells and organs grow into a remarkable diversity of shapes, as directed by cell walls composed primarily of polysaccharides such as cellulose and multiple structurally distinct pectins. The properties of the cell wall that allow for precise control of morphogenesis are distinct from those of the individual polysaccharide components. For example, cellulose, the primary determinant of cell morphology, is a chiral macromolecule that can self-assemble in vitro into larger-scale structures of consistent chirality, and yet most plant cells do not display consistent chirality in their growth. One interesting exception is the Arabidopsis thaliana rhm1 mutant, which has decreased levels of the pectin rhamnogalacturonan-I and causes conical petal epidermal cells to grow with a left-handed helical twist. Here, we show that in rhm1 the cellulose is bundled into large macrofibrils, unlike the evenly distributed microfibrils of the wild type. This cellulose bundling becomes increasingly severe over time, consistent with cellulose being synthesized normally and then self-associating into macrofibrils. We also show that in the wild type, cellulose is oriented transversely, whereas in rhm1 mutants, the cellulose forms right-handed helices that can account for the helical morphology of the petal cells. Our results indicate that when the composition of pectin is altered, cellulose can form cellular-scale chiral structures in vivo, analogous to the helicoids formed in vitro by cellulose nano-crystals. We propose that an important emergent property of the interplay between rhamnogalacturonan-I and cellulose is to permit the assembly of nonbundled cellulose structures, providing plants flexibility to orient cellulose and direct morphogenesis.
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Affiliation(s)
- Adam M Saffer
- Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, 06520, USA
| | - Tobias I Baskin
- Biology Department, University of Massachusetts, 611 N. Pleasant St, Amherst, Massachusetts, 01003, USA
| | - Amitabh Verma
- Marine Biological Laboratories, 7 MBL Street, Woods Hole, Massachusetts, 02543, USA
| | - Thomas Stanislas
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, 46 Allée d'Italie, 69364, Lyon Cedex 07, France
| | - Rudolf Oldenbourg
- Marine Biological Laboratories, 7 MBL Street, Woods Hole, Massachusetts, 02543, USA
| | - Vivian F Irish
- Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, 06520, USA
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, 06520, USA
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5
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Morris E, Pulham CR, Morrison CA. Structure and properties of nitrocellulose: approaching 200 years of research. RSC Adv 2023; 13:32321-32333. [PMID: 37928838 PMCID: PMC10620853 DOI: 10.1039/d3ra05457h] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/20/2023] [Indexed: 11/07/2023] Open
Abstract
This review brings together almost 200 years of fragmented research on the structure of nitrocellulose to give an overview that covers production to application in composite materials. As a mouldable plastic, energetic rocket propellant and biomolecular binding membrane, nitrocellulose still finds widespread practical application today despite the inception of synthetic plastics. The influence of different cellulose source materials affects the structure and properties of nitrocellulose in ways that are not fully understood, and so this review brings together relatively recent developments in the understanding of cellulose nanostructures to highlight where the gaps in understanding now reside. The influence of nitration conditions on the material properties of nitrocellulose is described, together with the proposed mechanisms and equilibria associated with these synthetic routes. The reported crystal structures of nitrocellulose are also reviewed, and the confirmed structural features are separated from those yet to be proven. We also consider how nitrocellulose interacts with other compounds, to help explain the distinct properties of its composite materials. This review points to further work that is required to obtain well founded structural models of nitrocellulose, while highlighting opportunities to control and direct its structure to improve its material properties.
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Affiliation(s)
- Edmund Morris
- School of Chemistry, EaStCHEM Research School, University of Edinburgh David Brewster Road, The King's Buildings Edinburgh EH9 3FJ UK
| | - Colin R Pulham
- School of Chemistry, EaStCHEM Research School, University of Edinburgh David Brewster Road, The King's Buildings Edinburgh EH9 3FJ UK
| | - Carole A Morrison
- School of Chemistry, EaStCHEM Research School, University of Edinburgh David Brewster Road, The King's Buildings Edinburgh EH9 3FJ UK
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Xu K, Ye H. Light scattering in stacked mesophyll cells results in similarity characteristic of solar spectral reflectance and transmittance of natural leaves. Sci Rep 2023; 13:4694. [PMID: 36949090 PMCID: PMC10033640 DOI: 10.1038/s41598-023-31718-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 03/16/2023] [Indexed: 03/24/2023] Open
Abstract
Solar spectral reflectance and transmittance of natural leaves exhibit dramatic similarity. To elucidate the formation mechanism and physiological significance, a radiative transfer model was constructed, and the effects of stacked mesophyll cells, chlorophyll content and leaf thickness on the visible light absorptance of the natural leaves were analyzed. Results indicated that light scattering caused by the stacked mesophyll cells is responsible for the similarity. The optical path of visible light in the natural leaves is increased with the scattering process, resulting in that the visible light transmittance is significantly reduced meanwhile the visible light reflectance is at a low level, thus the visible light absorptance tends to a maximum and the absorption of photosynthetically active radiation (PAR) by the natural leaves is significantly enhanced. Interestingly, as two key leaf functional traits affecting the absorption process of PAR, chlorophyll content and leaf thickness of the natural leaves in a certain environment show a convergent behavior, resulting in the high visible light absorptance of the natural leaves, which demonstrates the PAR utilizing strategies of the natural leaves. This work provides a new perspective for revealing the evolutionary processes and ecological strategies of natural leaves, and can be adopted to guide the improvement directions of crop photosynthesis.
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Affiliation(s)
- Kai Xu
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China, Hefei, 230027, People's Republic of China
| | - Hong Ye
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China, Hefei, 230027, People's Republic of China.
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7
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Etale A, Onyianta AJ, Turner SR, Eichhorn SJ. Cellulose: A Review of Water Interactions, Applications in Composites, and Water Treatment. Chem Rev 2023; 123:2016-2048. [PMID: 36622272 PMCID: PMC9999429 DOI: 10.1021/acs.chemrev.2c00477] [Citation(s) in RCA: 50] [Impact Index Per Article: 50.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Cellulose is known to interact well with water, but is insoluble in it. Many polysaccharides such as cellulose are known to have significant hydrogen bond networks joining the molecular chains, and yet they are recalcitrant to aqueous solvents. This review charts the interaction of cellulose with water but with emphasis on the formation of both natural and synthetic fiber composites. Covering studies concerning the interaction of water with wood, the biosynthesis of cellulose in the cell wall, to its dispersion in aqueous suspensions and ultimately in water filtration and fiber-based composite materials this review explores water-cellulose interactions and how they can be exploited for synthetic and natural composites. The suggestion that cellulose is amphiphilic is critically reviewed, with relevance to its processing. Building on this, progress made in using various charged and modified forms of nanocellulose to stabilize oil-water emulsions is addressed. The role of water in the aqueous formation of chiral nematic liquid crystals, and subsequently when dried into composite films is covered. The review will also address the use of cellulose as an aid to water filtration as one area where interactions can be used effectively to prosper human life.
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Affiliation(s)
- Anita Etale
- Bristol Composites Institute, School of Civil, Aerospace and Mechanical Engineering, University of Bristol, University Walk, BristolBS8 1TR, United Kingdom
| | - Amaka J Onyianta
- Bristol Composites Institute, School of Civil, Aerospace and Mechanical Engineering, University of Bristol, University Walk, BristolBS8 1TR, United Kingdom
| | - Simon R Turner
- School of Biological Science, University of Manchester, Oxford Road, ManchesterM13 9PT, U.K
| | - Stephen J Eichhorn
- Bristol Composites Institute, School of Civil, Aerospace and Mechanical Engineering, University of Bristol, University Walk, BristolBS8 1TR, United Kingdom
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8
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Cho YS, Lee JW, Kim J, Jung Y, Yang SJ, Park CR. Superstrong Carbon Nanotube Yarns by Developing Multiscale Bundle Structures on the Direct Spin-Line without Post-Treatment. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2204250. [PMID: 36404109 PMCID: PMC9839856 DOI: 10.1002/advs.202204250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 11/04/2022] [Indexed: 05/16/2023]
Abstract
Super strong fibers, such as carbon or aramid fibers, have long been used as effective fillers for advanced composites. In this study, the highest tensile strength of 5.5 N tex-1 for carbon nanotube yarns (CNTYs) is achieved by controlling the micro-textural structure through a facile and eco-friendly bundle engineering process in direct spinning without any post-treatment. Inspired by the strengthening mechanism of the hierarchical fibrillary structure of natural cellulose fiber, this study develops multiscale bundle structures in CNTYs whereby secondary bundles, ≈200 nm in thickness, evolve from the assembly of elementary bundles, 30 nm in thickness, without any damage, which is a basic load-bearing element in CNTY. The excellent mechanical performance of these CNTYs makes them promising substitutes for the benchmark, lightweight, and super strong commercial fibers used for energy-saving structural materials. These findings address how the tensile strength of CNTY can be improved without additional post-treatment in the spinning process if the development of the aforementioned secondary bundles and the corresponding orientations are properly engineered.
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Affiliation(s)
- Young Shik Cho
- Department of Materials Science & Engineering and Research Institute of Advanced MaterialsSeoul National UniversitySeoul08826Republic of Korea
- Composite Research DivisionKorea Institute of Materials Science (KIMS)Changwon51508Republic of Korea
| | - Jae Won Lee
- Department of Materials Science & Engineering and Research Institute of Advanced MaterialsSeoul National UniversitySeoul08826Republic of Korea
| | - Jaewook Kim
- Department of Materials Science & Engineering and Research Institute of Advanced MaterialsSeoul National UniversitySeoul08826Republic of Korea
| | - Yeonsu Jung
- Composite Research DivisionKorea Institute of Materials Science (KIMS)Changwon51508Republic of Korea
| | - Seung Jae Yang
- Department of Chemistry & Chemical EngineeringEducation and Research Center for Smart Energy and MaterialsInha UniversityIncheon22212Republic of Korea
| | - Chong Rae Park
- Department of Materials Science & Engineering and Research Institute of Advanced MaterialsSeoul National UniversitySeoul08826Republic of Korea
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9
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Review: Tertiary cell wall of plant fibers as a source of inspiration in material design. Carbohydr Polym 2022; 295:119849. [DOI: 10.1016/j.carbpol.2022.119849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 06/19/2022] [Accepted: 07/05/2022] [Indexed: 11/23/2022]
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10
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Pfaff SA, Wang X, Wagner ER, Wilson LA, Kiemle SN, Cosgrove DJ. Detecting the orientation of newly-deposited crystalline cellulose with fluorescent CBM3. Cell Surf 2022; 8:100089. [DOI: 10.1016/j.tcsw.2022.100089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 11/10/2022] [Accepted: 11/11/2022] [Indexed: 11/15/2022] Open
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Yurtsever A, Wang PX, Priante F, Morais Jaques Y, Miyazawa K, MacLachlan MJ, Foster AS, Fukuma T. Molecular insights on the crystalline cellulose-water interfaces via three-dimensional atomic force microscopy. SCIENCE ADVANCES 2022; 8:eabq0160. [PMID: 36240279 PMCID: PMC9565791 DOI: 10.1126/sciadv.abq0160] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Cellulose, a renewable structural biopolymer, is ubiquitous in nature and is the basic reinforcement component of the natural hierarchical structures of living plants, bacteria, and tunicates. However, a detailed picture of the crystalline cellulose surface at the molecular level is still unavailable. Here, using atomic force microscopy (AFM) and molecular dynamics (MD) simulations, we revealed the molecular details of the cellulose chain arrangements on the surfaces of individual cellulose nanocrystals (CNCs) in water. Furthermore, we visualized the three-dimensional (3D) local arrangement of water molecules near the CNC surface using 3D AFM. AFM experiments and MD simulations showed anisotropic water structuring, as determined by the surface topologies and exposed chemical moieties. These findings provide important insights into our understanding of the interfacial interactions between CNCs and water at the molecular level. This may allow the establishment of the structure-property relationship of CNCs extracted from various biomass sources.
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Affiliation(s)
- Ayhan Yurtsever
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- Corresponding author. (A.Y.); (T.F.)
| | - Pei-Xi Wang
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
| | - Fabio Priante
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Ygor Morais Jaques
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Keisuke Miyazawa
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Mark J. MacLachlan
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
| | - Adam S. Foster
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- Department of Applied Physics, Aalto University, Helsinki FI-00076, Finland
| | - Takeshi Fukuma
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- Corresponding author. (A.Y.); (T.F.)
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12
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Wang X, Wang P, Su Y, Wang Q, Ling Z, Yong Q. Supramolecular Deconstruction of Bamboo Holocellulose via Hydrothermal Treatment for Highly Efficient Enzymatic Conversion at Low Enzyme Dosage. Int J Mol Sci 2022; 23:ijms231911829. [PMID: 36233128 PMCID: PMC9570373 DOI: 10.3390/ijms231911829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Revised: 09/30/2022] [Accepted: 10/03/2022] [Indexed: 11/16/2022] Open
Abstract
Hydrothermal pretreatment (HTP) has long been considered as an efficient and green treatment process on lignocellulosic biomass for bioconversion. However, the variations of cellulose supramolecular structures during HTP as well as their effects on subsequent enzymatic conversion are less understood. In this work, bamboo holocellulose with well-connected cellulose and hemicelluloses polysaccharides were hydrothermally treated under various temperatures. Chemical, morphological, and crystal structural determinations were performed systematically by a series of advanced characterizations. Xylan was degraded to xylooligosaccharides in the hydrolyzates accompanied by the reduced degree of polymerization for cellulose. Cellulose crystallites were found to swell anisotropically, despite the limited decrystallization by HTP. Hydrogen bond linkages between cellulose molecular chains were weakened due to above chemical and crystal variations, which therefore swelled, loosened, and separated the condensed cellulose microfibrils. Samples after HTP present notably increased surface area, favoring the adsorption and subsequent hydrolysis by cellulase enzymes. A satisfying enzymatic conversion yield (>85%) at rather low cellulase enzyme dosage (10 FPU/g glucan) was obtained, which would indicate new understandings on the green and efficient bioconversion process on lignocellulosic biomass.
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Affiliation(s)
- Xinyan Wang
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Peng Wang
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Yan Su
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Qiyao Wang
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Zhe Ling
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
- State Key Laboratory of Pulp Paper Engineering, South China University of Technology, Guangzhou 510640, China
- Correspondence:
| | - Qiang Yong
- Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
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Molecular studies of cellulose synthase supercomplex from cotton fiber reveal its unique biochemical properties. SCIENCE CHINA. LIFE SCIENCES 2022; 65:1776-1793. [PMID: 35394636 DOI: 10.1007/s11427-022-2083-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 03/01/2022] [Indexed: 01/08/2023]
Abstract
Cotton fiber is a highly elongated and thickened single cell that produces large quantities of cellulose, which is synthesized and assembled into cell wall microfibrils by the cellulose synthase complex (CSC). In this study, we report that in cotton (Gossypium hirsutum) fibers harvested during secondary cell wall (SCW) synthesis, GhCesA 4, 7, and 8 assembled into heteromers in a previously uncharacterized 36-mer-like cellulose synthase supercomplex (CSS). This super CSC was observed in samples prepared using cotton fiber cells harvested during the SCW synthesis period but not from cotton stem tissue or any samples obtained from Arabidopsis. Knock-out of any of GhCesA 4, 7, and 8 resulted in the disappearance of the CSS and the production of fiber cells with no SCW thickening. Cotton fiber CSS showed significantly higher enzyme activity than samples prepared from knock-out cotton lines. We found that the microfibrils from the SCW of wild-type cotton fibers may contain 72 glucan chains in a bundle, unlike other plant materials studied. GhCesA4, 7, and 8 restored both the dwarf and reduced vascular bundle phenotypes of their orthologous Arabidopsis mutants, potentially by reforming the CSC hexamers. Genetic complementation was not observed when non-orthologous CesA genes were used, indicating that each of the three subunits is indispensable for CSC formation and for full cellulose synthase function. Characterization of cotton CSS will increase our understanding of the regulation of SCW biosynthesis.
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Chemical Characteristics of Wood Cell Wall with an Emphasis on Ultrastructure: A Mini-Review. FORESTS 2022. [DOI: 10.3390/f13030439] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Wood is complex in its chemical composition that has an important influence on its chemical behavior and mechanical strength. The complexity is reflected in the ultrastructure of the wood cell wall. In particular, the concentration of main components (cellulose, hemicelluloses and lignin) changes depending on many factors such as the different type or parts of wood, and varies in different cell wall layers. From an ultrastructural standpoint, we describe the current level of knowledge about chemical characteristics of the wood cell walls. The information of distribution of main components in the cell walls of normal wood, reaction wood and water-logged archaeological wood, the cellulose microfibrils orientation, and the interactions between main components were presented based on the use of advanced techniques including transmission electron microscopy, scanning electron microscopy, spectral imaging and nuclear magnetic resonance. In addition, the chemical changes of the wood cell wall during pretreatment are discussed. This mini-review not only provides a better understanding of wood chemistry, but also brings new insights into cell wall recalcitrance.
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15
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Acharya S, Liyanage S, Parajuli P, Rumi SS, Shamshina JL, Abidi N. Utilization of Cellulose to Its Full Potential: A Review on Cellulose Dissolution, Regeneration, and Applications. Polymers (Basel) 2021; 13:4344. [PMID: 34960895 PMCID: PMC8704128 DOI: 10.3390/polym13244344] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 12/06/2021] [Accepted: 12/09/2021] [Indexed: 12/17/2022] Open
Abstract
As the most abundant natural polymer, cellulose is a prime candidate for the preparation of both sustainable and economically viable polymeric products hitherto predominantly produced from oil-based synthetic polymers. However, the utilization of cellulose to its full potential is constrained by its recalcitrance to chemical processing. Both fundamental and applied aspects of cellulose dissolution remain active areas of research and include mechanistic studies on solvent-cellulose interactions, the development of novel solvents and/or solvent systems, the optimization of dissolution conditions, and the preparation of various cellulose-based materials. In this review, we build on existing knowledge on cellulose dissolution, including the structural characteristics of the polymer that are important for dissolution (molecular weight, crystallinity, and effect of hydrophobic interactions), and evaluate widely used non-derivatizing solvents (sodium hydroxide (NaOH)-based systems, N,N-dimethylacetamide (DMAc)/lithium chloride (LiCl), N-methylmorpholine-N-oxide (NMMO), and ionic liquids). We also cover the subsequent regeneration of cellulose solutions from these solvents into various architectures (fibers, films, membranes, beads, aerogels, and hydrogels) and review uses of these materials in specific applications, such as biomedical, sorption, and energy uses.
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Affiliation(s)
| | | | | | | | | | - Noureddine Abidi
- Department of Plant and Soil Science, Fiber and Biopolymer Research Institute, Texas Tech University, Lubbock, TX 79409, USA; (S.A.); (S.L.); (P.P.); (S.S.R.); (J.L.S.)
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16
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Roy S, Dikshit PK, Sherpa KC, Singh A, Jacob S, Chandra Rajak R. Recent nanobiotechnological advancements in lignocellulosic biomass valorization: A review. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 297:113422. [PMID: 34351298 DOI: 10.1016/j.jenvman.2021.113422] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 07/15/2021] [Accepted: 07/26/2021] [Indexed: 05/22/2023]
Abstract
Increase in human population, rapid industrialization, excessive utilization of fossil fuel utilization and anthropogenic activities have caused serious threats to the environment in terms of greenhouse gas emissions (GHGs), global warming, air pollution, acid rain, etc. This destruction in sustainability can be averted by a paradigm shift in the fuel production from fossil resources to bioenergy. Amongst different forms of bioenergy, lignocellulosic biomass can be utilized as an attractive substrate for the production of several high-value products owing to its renewability, easy availability, and abundance. Additionally, utilization of these waste biomasses reduces the environmental hazards associated with its disposal. Impedance of lignin and crystalline nature of cellulose pose major bottlenecks in biomass based energy. Though, several physio-chemicals processes are recommended as mitigation route but none of them seems to be promising for large scale application. In recent years, a right fusion of biological treatment combined with nanotechnology for efficient pretreatment and subsequent hydrolysis of biomass by ubiquitous enzymes seems to be promising alternative. In addition, to overcome these difficulties, nanotechnology-based methods have been recently adopted in catalytic valorization of lignocellulosic biomass. The present review has critically discussed the application of nano-biotechnology in lignocellulosic biomass valorization in terms of pretreatment and hydrolysis. A detailed discussion on the application of various nanoparticles in these processes, enzyme immobilization and end-production utilization is presented in this review. Finally, the review emphasizes the major challenges of this process along with different routes and recommendations to address the issues.
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Affiliation(s)
- Sharmili Roy
- Division of Oncology, School of Medicine, Stanford University, CA, 94305, USA
| | - Pritam Kumar Dikshit
- Department of Life Sciences, School of Basic Sciences and Research, Sharda University, Greater Noida, 201310, India
| | - Knawang Chhunji Sherpa
- Advanced Technology Development Centre, Indian Institute of Technology, Kharagpur, 721302, India
| | - Anshu Singh
- Agricultural and Food Engineering Department, Indian Institute of Technology, Kharagpur, 721302, India
| | - Samuel Jacob
- Department of Biotechnology, School of Engineering, SRM Institute of Science and Technology, Kattankulathur, India
| | - Rajiv Chandra Rajak
- Department of Botany, Marwari College, Ranchi University, Ranchi, 834008, India.
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17
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Liyanage S, Acharya S, Parajuli P, Shamshina JL, Abidi N. Production and Surface Modification of Cellulose Bioproducts. Polymers (Basel) 2021; 13:3433. [PMID: 34641248 PMCID: PMC8512298 DOI: 10.3390/polym13193433] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 09/29/2021] [Accepted: 10/02/2021] [Indexed: 12/17/2022] Open
Abstract
Petroleum-based synthetic plastics play an important role in our life. As the detrimental health and environmental effects of synthetic plastics continue to increase, the renewable, degradable and recyclable properties of cellulose make subsequent products the "preferred environmentally friendly" alternatives, with a small carbon footprint. Despite the fact that the bioplastic industry is growing rapidly with many innovative discoveries, cellulose-based bioproducts in their natural state face challenges in replacing synthetic plastics. These challenges include scalability issues, high cost of production, and most importantly, limited functionality of cellulosic materials. However, in order for cellulosic materials to be able to compete with synthetic plastics, they must possess properties adequate for the end use and meet performance expectations. In this regard, surface modification of pre-made cellulosic materials preserves the chemical profile of cellulose, its mechanical properties, and biodegradability, while diversifying its possible applications. The review covers numerous techniques for surface functionalization of materials prepared from cellulose such as plasma treatment, surface grafting (including RDRP methods), and chemical vapor and atomic layer deposition techniques. The review also highlights purposeful development of new cellulosic architectures and their utilization, with a specific focus on cellulosic hydrogels, aerogels, beads, membranes, and nanomaterials. The judicious choice of material architecture combined with a specific surface functionalization method will allow us to take full advantage of the polymer's biocompatibility and biodegradability and improve existing and target novel applications of cellulose, such as proteins and antibodies immobilization, enantiomers separation, and composites preparation.
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Affiliation(s)
| | | | | | | | - Noureddine Abidi
- Fiber and Biopolymer Research Institute, Texas Tech University, Lubbock, TX 79409-5019, USA; (S.L.); (S.A.); (P.P.); (J.L.S.)
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18
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Behle E, Raguin A. Stochastic model of lignocellulosic material saccharification. PLoS Comput Biol 2021; 17:e1009262. [PMID: 34516546 PMCID: PMC8460048 DOI: 10.1371/journal.pcbi.1009262] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 09/23/2021] [Accepted: 07/09/2021] [Indexed: 12/03/2022] Open
Abstract
The processing of agricultural wastes towards extraction of renewable resources is recently being considered as a promising alternative to conventional biofuel production. The degradation of agricultural residues is a complex chemical process that is currently time intensive and costly. Various pre-treatment methods are being investigated to determine the subsequent modification of the material and the main obstacles in increasing the enzymatic saccharification. In this study, we present a computational model that complements the experimental approaches. We decipher how the three-dimensional structure of the substrate impacts the saccharification dynamics. We model a cell wall microfibril composed of cellulose and surrounded by hemicellulose and lignin, with various relative abundances and arrangements. This substrate is subjected to digestion by different cocktails of well characterized enzymes. The saccharification dynamics is simulated in silico using a stochastic procedure based on a Gillespie algorithm. As we additionally implement a fitting procedure that optimizes the parameters of the simulation runs, we are able to reproduce experimental saccharification time courses for corn stover. Our model highlights the synergistic action of enzymes, and confirms the linear decrease of sugar conversion when either lignin content or crystallinity of the substrate increases. Importantly, we show that considering the crystallinity of cellulose in addition to the substrate composition is essential to interpret experimental saccharification data. Finally, our findings support the hypothesis of xylan being partially crystalline. Leftover wastes generated by agriculture, such as inedible leaves and stalks of plants, represent an abundant and unexploited raw material that contains energy in the form of sugar polymers. Their breakdown and processing into bio-ethanol is recently being considered as a promising candidate for renewable fuel production. However, it is still poorly understood, how the microscopic structure and composition of plant waste materials impact their enzymatic digestion. Various experimental pre-processing methods are currently being tested to determine their effect on the material composition and structure, and the sugar conversion. In this study, we present a computational model to complement such experimental approaches. We simulate a microscopic plant fragment typically found in plant waste materials, whose structure and composition can be tailored. This fragment is then subjected to enzymatic digestion, whose dynamics is tracked in silico. The model reproduces experimentally observed time courses for plant fragments of known composition. It additionally provides new hypotheses for interpreting complex experimental results.
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Affiliation(s)
- Eric Behle
- Department of Biology, Cluster of Excellence on Plant Sciences, Institute of Quantitative and Theoretical Biology, Heinrich-Heine University, Düsseldorf, Germany
| | - Adélaïde Raguin
- Department of Biology, Cluster of Excellence on Plant Sciences, Institute of Quantitative and Theoretical Biology, Heinrich-Heine University, Düsseldorf, Germany
- * E-mail:
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19
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Mahmud MA, Anannya FR. Sugarcane bagasse - A source of cellulosic fiber for diverse applications. Heliyon 2021; 7:e07771. [PMID: 34458615 PMCID: PMC8379461 DOI: 10.1016/j.heliyon.2021.e07771] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 05/14/2021] [Accepted: 08/10/2021] [Indexed: 11/28/2022] Open
Abstract
Sugarcane bagasse is a fibrous material containing cellulose as its main component. It is produced in large quantities across the world. It is a kind of waste material that comes from the sugar industry. It is most commonly used in paper industries, but researchers have suggested that different mechanical and chemical treatments can help to extract cellulosic fibers, pure cellulose, cellulose nanofibers, and cellulose nanocrystals. These extracted materials have diverse applications in regenerated cellulosic fiber and composite material production. This paper will discuss the extraction procedures and typical applications in composite industries of these extracted materials. And an assessment will also be done on the production process and the properties of the end products to find out some common factors which can control the properties of these extracted material reinforced composites to some extent.
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Affiliation(s)
- Md Arif Mahmud
- Ahsanullah University of Science and Technology, 41-142 Love Road, Tejgaon Industrial Area, Dhaka, 1208, Bangladesh
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20
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Bregado JL, Tavares FW, Secchi AR, Segtovich ISV. Molecular dynamics of dissolution of a 36-chain cellulose Iβ microfibril at different temperatures above the critical pressure of water. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116271] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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21
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Ling Z, Tang W, Su Y, Shao L, Wang P, Ren Y, Huang C, Lai C, Yong Q. Promoting enzymatic hydrolysis of aggregated bamboo crystalline cellulose by fast microwave-assisted dicarboxylic acid deep eutectic solvents pretreatments. BIORESOURCE TECHNOLOGY 2021; 333:125122. [PMID: 33878500 DOI: 10.1016/j.biortech.2021.125122] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 03/29/2021] [Accepted: 03/30/2021] [Indexed: 06/12/2023]
Abstract
Deep eutectic solvents (DESs) have received considerable interests as pretreatment solvents for biorefinery. In the present work, five kinds of dicarboxylic acids based DESs were introduced to pretreatments on moso bamboo (MB) with microwave irradiation assistance. Factors influencing the enzymatic conversion of MB cellulose to glucose were determined. With the fast heating, pretreated samples all present significant delignification and hemicelluloses matrix removal, thus improving the enzymatic conversion yield from 15% of MB to ~60%. For the DESs, hydrogen donors with less carbon atoms (oxalic acid) and more hydroxyl groups (tartaric acid) displayed higher efficiency due to separation of aggregated cellulose microfibrils. The microwave assisted DESs (MW-DESs) pretreatments also contributed to cellulose crystal variations including decrystallization and more exposure of hydrophobic surfaces, which are beneficial for followed cellulase adsorption and hydrolysis. The exploration of fast MW-DESs pretreatments may expand the potentials of lignocellulose biomass on effective and applicable biorefinery.
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Affiliation(s)
- Zhe Ling
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China; Key Laboratory of Pulp and Paper Science & Technology of Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, China
| | - Wei Tang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Yan Su
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Lupeng Shao
- Key Laboratory of Pulp and Paper Science & Technology of Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250353, China
| | - Peng Wang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Yuxuan Ren
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Caoxing Huang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Chenhuan Lai
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Qiang Yong
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China.
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22
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Hou Y, Sun X, Dou M, Lu C, Liu J, Rao W. Cellulose Nanocrystals Facilitate Needle-like Ice Crystal Growth and Modulate Molecular Targeted Ice Crystal Nucleation. NANO LETTERS 2021; 21:4868-4877. [PMID: 33819045 DOI: 10.1021/acs.nanolett.1c00514] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Ice nucleators are of crucial and important implications in various fields including chemistry, climate, agriculture, and cryobiology. However, the complicated extract and biocompatibility of ice nucleators remain unresolved, and the mechanism of ice nucleation remains largely unknown. Herein, we show that natural nanocrystalline cellulose materials possess special properties to enhance ice nucleation and facilitate needle-like ice crystal growth. We reveal the molecular level mechanism that the efficient exposure of cellulose hydroxyl groups on (-110) surface leads to faster nucleation of water. We further design chitosan-decorated cellulose nanocrystals to accomplish molecular cryoablation in CD 44 high-expression cells; the cell viability shows more than ∼10 times decrease compared to cryoablation alone and does not show evident systematic toxicity. Collectively, our findings also offer improved knowledge in molecular level ice nucleation, which may benefit multiple research communities and disciplines.
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Affiliation(s)
- Yi Hou
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xuyang Sun
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Mengjia Dou
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Chennan Lu
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jing Liu
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100049, China
- Department of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Wei Rao
- Beijing Key Lab of CryoBiomedical Engineering and Key Lab of Cryogenics, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100049, China
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23
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Easy ultrastructural insight into the internal morphology of biological specimens by Atomic Force Microscopy. Sci Rep 2021; 11:10214. [PMID: 33986350 PMCID: PMC8119718 DOI: 10.1038/s41598-021-89633-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 04/27/2021] [Indexed: 02/08/2023] Open
Abstract
As a topographical technique, Atomic Force Microscopy (AFM) needs to establish direct interactions between a given sample and the measurement probe in order to create imaging information. The elucidation of internal features of organisms, tissues and cells by AFM has therefore been a challenging process in the past. To overcome this hindrance, simple and fast embedding, sectioning and dehydration techniques are presented, allowing the easy access to the internal morphology of virtually any organism, tissue or cell by AFM. The study at hand shows the applicability of the proposed protocol to exemplary biological samples, the resolution currently allowed by the approach as well as advantages and shortcomings compared to classical ultrastructural microscopic techniques like electron microscopy. The presented cheap, facile, fast and non-toxic experimental protocol might introduce AFM as a universal tool for the elucidation of internal ultrastructural detail of virtually any given organism, tissue or cell.
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24
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Zhu JY, Agarwal UP, Ciesielski PN, Himmel ME, Gao R, Deng Y, Morits M, Österberg M. Towards sustainable production and utilization of plant-biomass-based nanomaterials: a review and analysis of recent developments. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:114. [PMID: 33957955 PMCID: PMC8101122 DOI: 10.1186/s13068-021-01963-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Accepted: 04/23/2021] [Indexed: 05/03/2023]
Abstract
Plant-biomass-based nanomaterials have attracted great interest recently for their potential to replace petroleum-sourced polymeric materials for sustained economic development. However, challenges associated with sustainable production of lignocellulosic nanoscale polymeric materials (NPMs) need to be addressed. Producing materials from lignocellulosic biomass is a value-added proposition compared with fuel-centric approach. This report focuses on recent progress made in understanding NPMs-specifically lignin nanoparticles (LNPs) and cellulosic nanomaterials (CNMs)-and their sustainable production. Special attention is focused on understanding key issues in nano-level deconstruction of cell walls and utilization of key properties of the resultant NPMs to allow flexibility in production to promote sustainability. Specifically, suitable processes for producing LNPs and their potential for scaled-up production, along with the resultant LNP properties and prospective applications, are discussed. In the case of CNMs, terminologies such as cellulose nanocrystals (CNCs) and cellulose nanofibrils (CNFs) used in the literature are examined. The term cellulose nano-whiskers (CNWs) is used here to describe a class of CNMs that has a morphology similar to CNCs but without specifying its crystallinity, because most applications of CNCs do not need its crystalline characteristic. Additionally, progress in enzymatic processing and drying of NPMs is also summarized. Finally, the report provides some perspective of future research that is likely to result in commercialization of plant-based NPMs.
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Affiliation(s)
- J Y Zhu
- USDA Forest Products Laboratory, One Gifford Pinchot Dr, Madison, WI, USA.
| | - Umesh P Agarwal
- USDA Forest Products Laboratory, One Gifford Pinchot Dr, Madison, WI, USA
| | | | | | - Runan Gao
- Renewable Bioproducts Institute, School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA
- College of Materials Science and Engineering, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Yulin Deng
- Renewable Bioproducts Institute, School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Maria Morits
- Department of Bioproducts and Biosystems, Aalto University, Espoo, Finland
| | - Monika Österberg
- Department of Bioproducts and Biosystems, Aalto University, Espoo, Finland
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25
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Silvestre GH, Pinto LO, Bernardes JS, Miwa RH, Fazzio A. Disassembly of TEMPO-Oxidized Cellulose Fibers: Intersheet and Interchain Interactions in the Isolation of Nanofibers and Unitary Chains. J Phys Chem B 2021; 125:3717-3724. [PMID: 33821657 DOI: 10.1021/acs.jpcb.1c01928] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cellulose disassembly is an important issue in designing nanostructures using cellulose-based materials. In this work, we present a combination of experimental and theoretical study addressing the disassembly of cellulose nanofibrils. Through 2,2,6,6-tetramethylpiperidine-1-oxyl-mediated oxidation processes, combined with atomic force microscopy results, we show the formation of nanofibers with diameters corresponding to that of a single-cellulose polymer chain. The formation of these polymer chains is controlled by repulsive electrostatic interactions between the oxidized chains. Further, first-principles calculations have been performed in order to provide an atomistic understanding of the cellulose disassembling processes, focusing on the balance between the interchain (IC) and intersheet (IS) interactions upon oxidation. First, we analyze these interactions in pristine systems, where we found the IS interaction to be stronger than the IC interaction. In the oxidized systems, we have considered the formation of (charged) carboxylate groups along the inner sites of elementary fibrils. We show a net charge concentration on the carboxylate groups, supporting the emergence of repulsive electrostatic interactions between the cellulose nanofibers. Indeed, our total energy results show that the weakening of the binding strength between the fibrils is proportional to the concentration and net charge density of the carboxylate group. Moreover, by comparing the IC and IS binding energies, we found that most of the disassembly processes should take place by breaking the IC O-H···O hydrogen bond interactions and thus supporting the experimental observation of single- and double-cellulose polymer chains.
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Affiliation(s)
- Gustavo H Silvestre
- Instituto de Física, Universidade Federal de Uberlândia, C.P. 593, Uberlândia 38400-902, Minas Gerais, Brazil
| | - Lidiane O Pinto
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo 13083-970, Brazil
| | - Juliana S Bernardes
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo 13083-970, Brazil.,Center for Natural and Human Sciences, Federal University of ABC, Santo André, São Paulo 09210-580, Brazil
| | - Roberto H Miwa
- Instituto de Física, Universidade Federal de Uberlândia, C.P. 593, Uberlândia 38400-902, Minas Gerais, Brazil
| | - Adalberto Fazzio
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo 13083-970, Brazil.,Center for Natural and Human Sciences, Federal University of ABC, Santo André, São Paulo 09210-580, Brazil
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26
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Xu H, Zhao Y, Suo Y, Guo Y, Man Y, Jing Y, He X, Lin J. A label-free, fast and high-specificity technique for plant cell wall imaging and composition analysis. PLANT METHODS 2021; 17:29. [PMID: 33741013 PMCID: PMC7980347 DOI: 10.1186/s13007-021-00730-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 03/08/2021] [Indexed: 05/12/2023]
Abstract
BACKGROUND New cell wall imaging tools permit direct visualization of the molecular architecture of cell walls and provide detailed chemical information on wall polymers, which will aid efforts to use these polymers in multiple applications; however, detailed imaging and quantification of the native composition and architecture in the cell wall remains challenging. RESULTS Here, we describe a label-free imaging technology, coherent Raman scattering (CRS) microscopy, including coherent anti-Stokes Raman scattering (CARS) microscopy and stimulated Raman scattering (SRS) microscopy, which can be used to visualize the major structures and chemical composition of plant cell walls. We outline the major steps of the procedure, including sample preparation, setting the mapping parameters, analysis of spectral data, and image generation. Applying this rapid approach will help researchers understand the highly heterogeneous structures and organization of plant cell walls. CONCLUSIONS This method can potentially be incorporated into label-free microanalyses of plant cell wall chemical composition based on the in situ vibrations of molecules.
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Affiliation(s)
- Huimin Xu
- College of Biological Sciences, China Agricultural University, Beijing, 100193, China
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
- School of Life Sciences, Peking University, Beijing, 100871, China
| | - Yuanyuan Zhao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Yuanzhen Suo
- School of Life Sciences, Peking University, Beijing, 100871, China
- Biomedical Pioneering Innovation Center, Peking University, Beijing, 100871, China
| | - Yayu Guo
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Yi Man
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Yanping Jing
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China
| | - Xinqiang He
- School of Life Sciences, Peking University, Beijing, 100871, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 10083, China.
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
- Institute of Tree Development and Genome Editing, Beijing Forestry University, Beijing, 100083, China.
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27
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Heise K, Kontturi E, Allahverdiyeva Y, Tammelin T, Linder MB, Ikkala O. Nanocellulose: Recent Fundamental Advances and Emerging Biological and Biomimicking Applications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2004349. [PMID: 33289188 DOI: 10.1002/adma.202004349] [Citation(s) in RCA: 127] [Impact Index Per Article: 42.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 08/01/2020] [Indexed: 06/12/2023]
Abstract
In the effort toward sustainable advanced functional materials, nanocelluloses have attracted extensive recent attention. Nanocelluloses range from rod-like highly crystalline cellulose nanocrystals to longer and more entangled cellulose nanofibers, earlier denoted also as microfibrillated celluloses and bacterial cellulose. In recent years, they have spurred research toward a wide range of applications, ranging from nanocomposites, viscosity modifiers, films, barrier layers, fibers, structural color, gels, aerogels and foams, and energy applications, until filtering membranes, to name a few. Still, nanocelluloses continue to show surprisingly high challenges to master their interactions and tailorability to allow well-controlled assemblies for functional materials. Rather than trying to review the already extensive nanocellulose literature at large, here selected aspects of the recent progress are the focus. Water interactions, which are central for processing for the functional properties, are discussed first. Then advanced hybrid gels toward (multi)stimuli responses, shape-memory materials, self-healing, adhesion and gluing, biological scaffolding, and forensic applications are discussed. Finally, composite fibers are discussed, as well as nanocellulose as a strategy for improvement of photosynthesis-based chemicals production. In summary, selected perspectives toward new directions for sustainable high-tech functional materials science based on nanocelluloses are described.
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Affiliation(s)
- Katja Heise
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
| | - Eero Kontturi
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
| | - Yagut Allahverdiyeva
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, FI-20014, Finland
| | - Tekla Tammelin
- VTT Technical Research Centre of Finland Ltd, VTT, PO Box 1000, FIN-02044, Espoo, Finland
| | - Markus B Linder
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
| | - Olli Ikkala
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
- Department of Applied Physics, Aalto University, Espoo, FI-00076, Finland
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28
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Li J, Wang X, Wang X, Ma P, Yin W, Wang Y, Chen Y, Chen S, Jia H. Hydrogen sulfide promotes hypocotyl elongation via increasing cellulose content and changing the arrangement of cellulose fibrils in alfalfa. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:5852-5864. [PMID: 32640016 DOI: 10.1093/jxb/eraa318] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
Hydrogen sulfide (H2S) is known to have positive physiological functions in plant growth, but limited data are available on its influence on cell walls. Here, we demonstrate a novel mechanism by which H2S regulates the biosynthesis and deposition of cell wall cellulose in alfalfa (Medicago sativa). Treatment with NaHS was found to increase the length of epidermal cells in the hypocotyl, and transcriptome analysis indicated that it caused the differential expression of numerous of cell wall-related genes. These differentially expressed genes were directly associated with the biosynthesis of cellulose and hemicellulose, and with the degradation of pectin. Analysis of cell wall composition showed that NaHS treatment increased the contents of cellulose and hemicellulose, but decreased the pectin content. Atomic force microscopy revealed that treatment with NaHS decreased the diameter of cellulose fibrils, altered the arrangement of the fibrillar bundles, and increased the spacing between the bundles. The dynamics of cellulose synthase complexes (CSCs) were closely related to cellulose synthesis, and NaHS increased the rate of mobility of the particles. Overall, our results suggest that the H2S signal enhances the plasticity of the cell wall by regulating the deposition of cellulose fibrils and by decreasing the pectin content. The resulting increases in cellulose and hemicellulose contents lead to cell wall expansion and cell elongation.
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Affiliation(s)
- Jisheng Li
- Biomass Energy Center for Arid and Semi-arid Lands, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Xiaofeng Wang
- Biomass Energy Center for Arid and Semi-arid Lands, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Xiao Wang
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi, China
| | - Peiyun Ma
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi, China
| | - Weili Yin
- Biomass Energy Center for Arid and Semi-arid Lands, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Yanqing Wang
- Life Science Research Core, Northwest A&F University, Yangling, Shaanxi, China
| | - Ying Chen
- Biomass Energy Center for Arid and Semi-arid Lands, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Shaolin Chen
- Biomass Energy Center for Arid and Semi-arid Lands, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China
| | - Honglei Jia
- School of Environmental Science and Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi, China
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29
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Ye D, Rongpipi S, Kiemle SN, Barnes WJ, Chaves AM, Zhu C, Norman VA, Liebman-Peláez A, Hexemer A, Toney MF, Roberts AW, Anderson CT, Cosgrove DJ, Gomez EW, Gomez ED. Preferred crystallographic orientation of cellulose in plant primary cell walls. Nat Commun 2020; 11:4720. [PMID: 32948753 PMCID: PMC7501228 DOI: 10.1038/s41467-020-18449-x] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 08/19/2020] [Indexed: 12/20/2022] Open
Abstract
Cellulose, the most abundant biopolymer on earth, is a versatile, energy rich material found in the cell walls of plants, bacteria, algae, and tunicates. It is well established that cellulose is crystalline, although the orientational order of cellulose crystallites normal to the plane of the cell wall has not been characterized. A preferred orientational alignment of cellulose crystals could be an important determinant of the mechanical properties of the cell wall and of cellulose-cellulose and cellulose-matrix interactions. Here, the crystalline structures of cellulose in primary cell walls of onion (Allium cepa), the model eudicot Arabidopsis (Arabidopsis thaliana), and moss (Physcomitrella patens) were examined through grazing incidence wide angle X-ray scattering (GIWAXS). We find that GIWAXS can decouple diffraction from cellulose and epicuticular wax crystals in cell walls. Pole figures constructed from a combination of GIWAXS and X-ray rocking scans reveal that cellulose crystals have a preferred crystallographic orientation with the (200) and (110)/([Formula: see text]) planes preferentially stacked parallel to the cell wall. This orientational ordering of cellulose crystals, termed texturing in materials science, represents a previously unreported measure of cellulose organization and contradicts the predominant hypothesis of twisting of microfibrils in plant primary cell walls.
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Affiliation(s)
- Dan Ye
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Sintu Rongpipi
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Sarah N Kiemle
- Department of Biology, The Pennsylvania State University, University Park, PA, 16802, USA
- 123 Clapp Laboratory, Mount Holyoke College, 50 College Street, South Hadley, MA, 01075, USA
| | - William J Barnes
- Department of Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Arielle M Chaves
- Department of Biological Sciences, The University of Rhode Island, Kingston, RI, 02881, USA
| | - Chenhui Zhu
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Victoria A Norman
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Alexander Liebman-Peláez
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Alexander Hexemer
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Michael F Toney
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA
| | - Alison W Roberts
- Department of Biological Sciences, The University of Rhode Island, Kingston, RI, 02881, USA
| | - Charles T Anderson
- Department of Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Daniel J Cosgrove
- Department of Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Esther W Gomez
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA.
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA.
| | - Enrique D Gomez
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA.
- Department of Materials Science and Engineering and Materials Research Institute, The Pennsylvania State University, University Park, PA, 16802, USA.
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30
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Park S, Ding SY. The N-terminal zinc finger of CELLULOSE SYNTHASE6 is critical in defining its functional properties by determining the level of homodimerization in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:1826-1838. [PMID: 32524705 DOI: 10.1111/tpj.14870] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 05/25/2020] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Primary cell wall cellulose is synthesized by the cellulose synthase complex (CSC) containing CELLULOSE SYNTHASE1 (CESA1), CESA3 and one of four CESA6-like proteins in Arabidopsis. It has been proposed that the CESA6-like proteins occupy the same position in the CSC, but their underlying selection mechanism remains unclear. We produced a chimeric CESA5 by replacing its N-terminal zinc finger with its CESA6 counterpart to investigate the consequences for its homodimerization, a crucial step in forming higher-order structures during assembly of the CSC. We found that the mutant phenotypes of prc1-1, a cesa6 null mutant, were rescued by the chimeric CESA5, and became comparable to the wild type (WT) and prc1-1 complemented by WT CESA6 in regard to plant growth, cellulose content, cellulose microfibril organization, CSC dynamics and subcellular localization. Bimolecular fluorescence complementation assays were employed to evaluate pairwise interactions between the N-terminal regions of CESA1, CESA3, CESA5, CESA6 and the chimeric CESA5. We verified that the chimeric CESA5 explicitly interacted with all the other CESA partners, comparable to CESA6, whereas interaction between CESA5 with itself was significantly weaker than that of all other CESA pairs. Our findings suggest that the homodimerization of CESA6 through its N-terminal zinc finger is critical in defining its functional properties, and possibly determines its intrinsic roles in facilitating higher-order structures in CSCs.
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Affiliation(s)
- Sungjin Park
- Department of Plant Biology, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA
- Great Lakes Bioenergy Research Center, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA
| | - Shi-You Ding
- Department of Plant Biology, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA
- Great Lakes Bioenergy Research Center, Michigan State University, 612 Wilson Road, East Lansing, MI, 48824, USA
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31
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Silva CE, Tam KC, Bernardes JS, Loh W. Double stabilization mechanism of O/W Pickering emulsions using cationic nanofibrillated cellulose. J Colloid Interface Sci 2020; 574:207-216. [DOI: 10.1016/j.jcis.2020.04.001] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 03/30/2020] [Accepted: 04/01/2020] [Indexed: 12/21/2022]
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32
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Garg M, Linares M, Zozoulenko I. Theoretical Rationalization of Self-Assembly of Cellulose Nanocrystals: Effect of Surface Modifications and Counterions. Biomacromolecules 2020; 21:3069-3080. [DOI: 10.1021/acs.biomac.0c00469] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Mohit Garg
- Laboratory of Organic Electronics, Department of Science and Technology (ITN), Campus Norrköping, Linköping University, Norrköping SE-60174, Sweden
| | - Mathieu Linares
- Laboratory of Organic Electronics, Department of Science and Technology (ITN), Campus Norrköping, Linköping University, Norrköping SE-60174, Sweden
- Scientific Visualization Group, Department of Science and Technology (ITN), Campus Norrköping, Linköping University, Norrköping SE-60174, Sweden
- Swedish e-Science Research Centre (SeRC), Linköping University, Linköping SE-581 83, Sweden
| | - Igor Zozoulenko
- Laboratory of Organic Electronics, Department of Science and Technology (ITN), Campus Norrköping, Linköping University, Norrköping SE-60174, Sweden
- Wallenberg Wood Science Center, Linköping University, Norrköping SE-60174, Sweden
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33
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Zhou Y, Ono Y, Takeuchi M, Isogai A. Changes to the Contour Length, Molecular Chain Length, and Solid-State Structures of Nanocellulose Resulting from Sonication in Water. Biomacromolecules 2020; 21:2346-2355. [PMID: 32271549 DOI: 10.1021/acs.biomac.0c00281] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Sonication in water reduced the average contour lengths of nanocellulose prepared from wood cellulose fiber and microcrystalline cellulose. Most of the kinks in the wood cellulose nanofibrils were formed during the initial 10 min of sonication. Fragmentation occurred at the kinks and rigid segments associated with depolymerization during subsequent sonication for 10-120 min, resulting in the formation of cellulose nanocrystals with low aspect ratios. Solid-state cross-polarization magic angle sample spinning 13C-nuclear magnetic resonance revealed that the original crystalline regions of the cellulose were partly transformed to fibril surfaces or disordered regions by both pretreatment and the subsequent fragmentation of molecular chains during sonication. The nanocellulose prepared from microcrystalline cellulose had different fragmentation behavior with regard to molecular chain length following sonication. The results indicated that on average the hexagonal 36 cellulose chain structure formed the cross-section of each wood cellulose microfibril.
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Affiliation(s)
- Yaxin Zhou
- Department of Biomaterials Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Yuko Ono
- Department of Biomaterials Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Miyuki Takeuchi
- Department of Biomaterials Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Akira Isogai
- Department of Biomaterials Science, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
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34
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Adobes-Vidal M, Frey M, Keplinger T. Atomic force microscopy imaging of delignified secondary cell walls in liquid conditions facilitates interpretation of wood ultrastructure. J Struct Biol 2020; 211:107532. [PMID: 32442716 DOI: 10.1016/j.jsb.2020.107532] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 05/12/2020] [Accepted: 05/15/2020] [Indexed: 01/25/2023]
Abstract
Deep understanding of the physicochemical and structural characteristics of wood at the nanoscale is essential for improving wood usage in biorefining and advancing new high performance materials design. Herein, we use in situ atomic force microscopy and a simple delignification treatment to elucidate the nanoscale architecture of individual secondary cell wall layers. Advantages of this approach are: (i) minimal sample preparation that reduces the introduction of potential artifacts; (ii) prevention of structural rearrangements due to dehydration; (iii) increased accessibility to structural details masked by the lignin matrix; and (iv) possibility to complement results with other analytical techniques without sample manipulation. The methodology permits the visualization of parallel and helicoidally arranged microfibril aggregates in the S1 layer and the determination of lignin contribution to microfibril aggregates forming S2 layers. Cellulose and hemicelluloses constitute the core of the aggregates with a mean diameter of approximately 19 nm, and lignin encloses the core forming single structural entities of about 30 nm diameter. Furthermore, we highlight the implications of sample preparation and imaging parameters on the characterization of microfibril aggregates by AFM.
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Affiliation(s)
- Maria Adobes-Vidal
- Wood Materials Science, ETH Zürich, Stefano-Franscini-Platz 3, 8093 Zürich, Switzerland; Laboratory for Cellulose & Wood Materials, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland.
| | - Marion Frey
- Wood Materials Science, ETH Zürich, Stefano-Franscini-Platz 3, 8093 Zürich, Switzerland; Laboratory for Cellulose & Wood Materials, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Tobias Keplinger
- Wood Materials Science, ETH Zürich, Stefano-Franscini-Platz 3, 8093 Zürich, Switzerland; Laboratory for Cellulose & Wood Materials, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland.
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35
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Rolland N, Mehandzhiyski AY, Garg M, Linares M, Zozoulenko IV. New Patchy Particle Model with Anisotropic Patches for Molecular Dynamics Simulations: Application to a Coarse-Grained Model of Cellulose Nanocrystal. J Chem Theory Comput 2020; 16:3699-3711. [DOI: 10.1021/acs.jctc.0c00259] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Nicolas Rolland
- Laboratory of Organic Electronics, ITN, Linköping University, SE-601 74 Norrköping, Sweden
| | | | - Mohit Garg
- Laboratory of Organic Electronics, ITN, Linköping University, SE-601 74 Norrköping, Sweden
| | - Mathieu Linares
- Laboratory of Organic Electronics, ITN, Linköping University, SE-601 74 Norrköping, Sweden
- Scientific Visualization Group, ITN, Linköping University, SE-601 74 Norrköping, Sweden
- Swedish e-Science Research Centre (SeRC), Linköping University, SE-581 83 Linköping, Sweden
| | - Igor V. Zozoulenko
- Laboratory of Organic Electronics, ITN, Linköping University, SE-601 74 Norrköping, Sweden
- Wallenberg Wood Science Center, Linköping University, SE-601 74 Norrköping, Sweden
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36
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Song B, Zhao S, Shen W, Collings C, Ding SY. Direct Measurement of Plant Cellulose Microfibril and Bundles in Native Cell Walls. FRONTIERS IN PLANT SCIENCE 2020; 11:479. [PMID: 32391038 PMCID: PMC7193091 DOI: 10.3389/fpls.2020.00479] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 03/31/2020] [Indexed: 05/07/2023]
Abstract
Plants use rigid cellulose together with non-cellulosic matrix polymers to build cell walls. Cellulose microfibrils comprise linear β(1,4)-glucan chains packed through inter- and intra-chain hydrogen-bonding networks and van der Waals forces. Due to its small size, the number of glucan chains and their arrangement in a microfibril remains elusive. Here we used atomic force microscopy (AFM) to directly image primary cell walls (PCWs) and secondary cell walls (SCWs) from fresh tissues of maize (Zea mays) under near-native conditions. By analyzing cellulose structure in different types of cell walls, we were able to measure the individual microfibrils in elongated PCWs at the sub-nanometer scale. The dimension of the microfibril was measured at 3.68 ± 0.13 nm in width and 2.25 ± 0.10 nm in height. By superimposing multiple AFM height profiles of these microfibrils, the overlay area representing the cross-section was estimated at 5.6 ± 0.4 nm2, which fitted well to an 18-chain model packed as six sheets with 234432 conformation. Interestingly we found in PCW, all these individual microfibrils could be traced back to a bundle in larger imaging area, suggesting cellulose are synthesized as large bundles in PCWs, and then split during cell expansion or elongation. In SCWs where cell growth has ceased we observed nearly-parallel twined or individual microfibrils that appeared to be embedded separately in the matrix polymers without the splitting effect, indicating different mechanisms of cellulose biosynthesis in PCW and SCW. The sub-nanometer structure of the microfibril presented here was measured exclusively from elongated PCWs, further study is required to verify if it represents the inherent structure synthesized by the cellulose synthase complex in PCWs and SCWs.
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Affiliation(s)
- Bo Song
- Department of Plant Biology, Michigan State University, East Lansing, MI, United States
| | - Shuai Zhao
- Department of Plant Biology, Michigan State University, East Lansing, MI, United States
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, United States
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Nanning, China
| | - Wei Shen
- Department of Plant Biology, Michigan State University, East Lansing, MI, United States
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, United States
| | - Cynthia Collings
- Department of Plant Biology, Michigan State University, East Lansing, MI, United States
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, United States
| | - Shi-You Ding
- Department of Plant Biology, Michigan State University, East Lansing, MI, United States
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, United States
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37
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Affiliation(s)
- Andreas Mautner
- Polymer and Composite Engineering (PaCE) GroupInstitute of Materials Chemistry and Research, University of Vienna Vienna Austria
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38
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Ji A, Zhang S, Bhagia S, Yoo CG, Ragauskas AJ. 3D printing of biomass-derived composites: application and characterization approaches. RSC Adv 2020; 10:21698-21723. [PMID: 35516598 PMCID: PMC9054612 DOI: 10.1039/d0ra03620j] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 05/29/2020] [Indexed: 01/05/2023] Open
Abstract
Biomass-derived 3D printing has attracted interests because of its developing technology and availability with renewable materials as well as compatible characteristics for many applications.
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Affiliation(s)
- Anqi Ji
- Department of Chemical Engineering
- State University of New York College of Environmental Science and Forestry
- Syracuse
- USA
| | - Shuyang Zhang
- Department of Chemical and Biomolecular Engineering
- University of Tennessee
- Knoxville
- USA
| | | | - Chang Geun Yoo
- Department of Chemical Engineering
- State University of New York College of Environmental Science and Forestry
- Syracuse
- USA
| | - Arthur J. Ragauskas
- Department of Chemical and Biomolecular Engineering
- University of Tennessee
- Knoxville
- USA
- Biosciences Division
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39
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Jiang X, Chen Y, Yuan Y, Zheng L. Thermal Response in Cellulose I β Based on Molecular Dynamics. COMPUTATIONAL AND MATHEMATICAL BIOPHYSICS 2019. [DOI: 10.1515/cmb-2019-0007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
The structural details of cellulose I β were discussed according to molecular dynamics simulations with the GLYCAM-06 force field. The simulation outcomes were in agreement with previous experimental data, including structural parameters and hydrogen bond pattern at 298 K. We found a new conformation of cellulose Iβ existed at the intermediate temperature that is between the low and high temperatures. Partial chain rotations along the backbone direction were found and conformations of hydroxymethyl groups that alternated from tg to either gt or gg were observed when the temperature increased from 298 K to 400 K. In addition, the gg conformation is preferred than gt. For the structure adopted at high temperature of 500 K, major chains were twisted and two chains detached from each plain. In contrast to the observation under intermediate temperature, the population of hydroxymethyl groups in gt exceeded that in gg conformation at high temperature. In addition, three patterns of hydrogen bonding were identified at low, intermediate and high temperatures in the simulations. The provided structural information indicated the transitions occurred around 350 K and 450 K, considered as the transitional temperatures of cellulose Iβ in this work.
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Affiliation(s)
- Xuewei Jiang
- Wuhan Textile and Apparel Digital Engineering Technology Research Center , Wuhan Textile University , Wuhan 430073 , Hubei, China ; Hubei Key Laboratory of Biomass Fibers and Eco-dyeing & Finishing , Wuhan Textile University , Wuhan 430073 , China
| | - Yu Chen
- Wuhan Textile and Apparel Digital Engineering Technology Research Center , Wuhan Textile University , Wuhan 430073 , Hubei, China
| | - Yue Yuan
- Department of Textile Engineering, Chemistry and Science , North Carolina State University , USA 27067
| | - Lu Zheng
- Wuhan Textile and Apparel Digital Engineering Technology Research Center , Wuhan Textile University , Wuhan 430073 , Hubei, China
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40
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Falcioni R, Moriwaki T, Perez-Llorca M, Munné-Bosch S, Gibin MS, Sato F, Pelozo A, Pattaro MC, Giacomelli ME, Rüggeberg M, Antunes WC. Cell wall structure and composition is affected by light quality in tomato seedlings. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2019; 203:111745. [PMID: 31931381 DOI: 10.1016/j.jphotobiol.2019.111745] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 11/22/2019] [Accepted: 12/13/2019] [Indexed: 12/27/2022]
Abstract
Light affects many aspects of cell development. Tomato seedlings growing at different light qualities (white, blue, green, red, far-red) and in the dark displayed alterations in cell wall structure and composition. A strong and negative correlation was found between cell wall thickness and hypocotyl growth. Cell walls was thicker under blue and white lights and thinner under far-red light and in the dark, while intermediate values was observed for red or green lights. Additionally, the inside layer surface of cell wall presented random deposited microfibrillae angles under far-red light and in the dark. However, longitudinal transmission electron microscopy indicates a high frequency of microfibrils close to parallels related to the elongation axis in the outer layer. This was confirmed by ultra-high resolution small angle X-ray scattering. These data suggest that cellulose microfibrils would be passively reoriented in the longitudinal direction. As the cell expands, the most recently deposited layers (inside) behave differentially oriented compared to older (outer) layers in the dark or under FR lights, agreeing with the multinet growth hypothesis. High Ca and pectin levels were found in the cell wall of seedlings growing under blue and white light, also contributing to the low extensibility of the cell wall. Low Ca and pectin contents were found in the dark and under far-red light. Auxins marginally stimulated growth in thin cell wall circumstances. Hypocotyl growth was stimulated by gibberellins under blue light.
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Affiliation(s)
- Renan Falcioni
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil; Plant Biochemistry Laboratory, Department of Biochemistry, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Thaise Moriwaki
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Marina Perez-Llorca
- Antiox Research Group, Department of Evolutionary Biology, Ecology and Environmental Sciences, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal, 645, 08028 Barcelona, Spain
| | - Sergi Munné-Bosch
- Antiox Research Group, Department of Evolutionary Biology, Ecology and Environmental Sciences, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal, 645, 08028 Barcelona, Spain
| | - Mariana Sversut Gibin
- Optical Spectroscopy and Thermophysical Properties Research Group, Department of Physics, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Francielle Sato
- Optical Spectroscopy and Thermophysical Properties Research Group, Department of Physics, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Andressa Pelozo
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil; Plant Anatomy Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Mariana Carmona Pattaro
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Marina Ellen Giacomelli
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil
| | - Markus Rüggeberg
- Wood Material Science, Institute for Building Materials, Swiss Federal Institute of Technology Zurich (ETH Zurich), Schafmattstrasse 6, CH-8093 Zurich, Switzerland
| | - Werner Camargos Antunes
- Plant Ecophysiology Laboratory, Department of Biology, State University of Maringá, Av. Colombo, 5790, 87020-900 Maringá, Paraná, Brazil.
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Ballmann P, Lightfoot J, Müller M, Dröge S, Prade R. Redesigning the Aspergillus nidulans xylanase regulatory pathway to enhance cellulase production with xylose as the carbon and inducer source. Microb Cell Fact 2019; 18:193. [PMID: 31699093 PMCID: PMC6839167 DOI: 10.1186/s12934-019-1243-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 10/24/2019] [Indexed: 11/10/2022] Open
Abstract
Background Biomass contains cellulose (C6-sugars), hemicellulose (C5-sugars) and lignin. Biomass ranks amongst the most abundant hydrocarbon resources on earth. However, biomass is recalcitrant to enzymatic digestion by cellulases. Physicochemical pretreatment methods make cellulose accessible but partially destroy hemicellulose, producing a C5-sugar-rich liquor. Typically, digestion of pretreated LCB is performed with commercial cellulase preparations, but C5-sugars could in principle be used for “on site” production of cellulases by genetically engineered microorganism, thereby reducing costs. Results Here we report a succession of genetic interventions in Aspergillus nidulans that redesign the natural regulatory circuitry of cellulase genes in such a way that recombinant strains use C5-sugar liquors (xylose) to grow a vegetative tissue and simultaneously accumulate large amounts of cellulases. Overexpression of XlnR showed that under xylose-induction conditions only xylanase C was produced. XlnR overexpression strains were constructed that use the xynCp promoter to drive the production of cellobiohydrolases, endoglucanases and β-glucosidase. All five cellulases accumulated at high levels when grown on xylose. Production of cellulases in the presence of pretreated-biomass C5-sugar liquors was investigated, and cellulases accumulated to much higher enzyme titers than those obtained for traditional fungal cell factories with cellulase-inducing substrates. Conclusions By replacing expensive substrates with a cheap by-product carbon source, the use of C5-sugar liquors directly derived from LCB pretreatment processes not only reduces enzyme production costs, but also lowers operational costs by eliminating the need for off-site enzyme production, purification, concentration, transport and dilution.
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Affiliation(s)
- Patrick Ballmann
- Prüf- und Forschungsinstitut Pirmasens e.V., Marie-Curie-Strasse 19, 66953, Pirmasens, Germany
| | - Jorge Lightfoot
- Department of Microbiology & Molecular Genetics, Oklahoma State University, Stillwater, OK, 74078, USA
| | - Michael Müller
- Prüf- und Forschungsinstitut Pirmasens e.V., Marie-Curie-Strasse 19, 66953, Pirmasens, Germany
| | - Stephan Dröge
- Prüf- und Forschungsinstitut Pirmasens e.V., Marie-Curie-Strasse 19, 66953, Pirmasens, Germany
| | - Rolf Prade
- Department of Microbiology & Molecular Genetics, Oklahoma State University, Stillwater, OK, 74078, USA.
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42
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Zhao Y, Man Y, Wen J, Guo Y, Lin J. Advances in Imaging Plant Cell Walls. TRENDS IN PLANT SCIENCE 2019; 24:867-878. [PMID: 31257154 DOI: 10.1016/j.tplants.2019.05.009] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Revised: 05/20/2019] [Accepted: 05/27/2019] [Indexed: 05/24/2023]
Abstract
Understanding of cell wall architecture, including the crosslinking of cell wall polymers, provides crucial information for elucidating the relationship between cell wall structure and cell function. Moreover, examination of the cell wall informs efforts to improve biomass breakdown in bioreactor conditions. Over the past decades, imaging techniques have been used extensively to reveal the structural organization and chemical composition of cell walls, but detailed imaging of the native composition and architecture of the cell wall remains challenging. Here, we review progress in the development of cell wall imaging techniques. In particular, we focus on several advanced, label-free techniques for imaging cell walls and their potential applications in investigation of the biological functions of plant cell walls.
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Affiliation(s)
- Yuanyuan Zhao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Yi Man
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Jialong Wen
- Beijing Key laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Yayu Guo
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
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Pinto LO, Bernardes JS, Rezende CA. Low-energy preparation of cellulose nanofibers from sugarcane bagasse by modulating the surface charge density. Carbohydr Polym 2019; 218:145-153. [DOI: 10.1016/j.carbpol.2019.04.070] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 03/13/2019] [Accepted: 04/19/2019] [Indexed: 12/15/2022]
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Yi H, Chen Y, Wang JZ, Puri VM, Anderson CT. The stomatal flexoskeleton: how the biomechanics of guard cell walls animate an elastic pressure vessel. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3561-3572. [PMID: 30977824 DOI: 10.1093/jxb/erz178] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Accepted: 04/08/2019] [Indexed: 06/09/2023]
Abstract
In plants, stomatal guard cells are one of the most dynamic cell types, rapidly changing their shape and size in response to environmental and intrinsic signals to control gas exchange at the plant surface. Quantitative and systematic knowledge of the biomechanical underpinnings of stomatal dynamics will enable strategies to optimize stomatal responsiveness and improve plant productivity by enhancing the efficiency of photosynthesis and water use. Recent developments in microscopy, mechanical measurements, and computational modeling have revealed new insights into the biomechanics of stomatal regulation and the genetic, biochemical, and structural origins of how plants achieve rapid and reliable stomatal function by tuning the mechanical properties of their guard cell walls. This review compares historical and recent experimental and modeling studies of the biomechanics of stomatal complexes, highlighting commonalities and contrasts between older and newer studies. Key gaps in our understanding of stomatal functionality are also presented, along with assessments of potential methods that could bridge those gaps.
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Affiliation(s)
- Hojae Yi
- Department of Agricultural and Biological Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Yintong Chen
- Department of Biology and Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park, PA, USA
| | - James Z Wang
- College of Information Sciences and Technology The Pennsylvania State University, University Park, PA, USA
| | - Virendra M Puri
- Department of Agricultural and Biological Engineering, The Pennsylvania State University, University Park, PA, USA
| | - Charles T Anderson
- Department of Biology and Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park, PA, USA
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45
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Lehman TA, Sanguinet KA. Auxin and Cell Wall Crosstalk as Revealed by the Arabidopsis thaliana Cellulose Synthase Mutant Radially Swollen 1. PLANT & CELL PHYSIOLOGY 2019; 60:1487-1503. [PMID: 31004494 DOI: 10.1093/pcp/pcz055] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 03/29/2019] [Indexed: 06/09/2023]
Abstract
Plant cells sheath themselves in a complex lattice of polysaccharides, proteins and enzymes forming an integral matrix known as the cell wall. Cellulose microfibrils, the primary component of cell walls, are synthesized at the plasma membrane by CELLULOSE SYNTHASE A (CESA) proteins throughout cellular growth and are responsible for turgor-driven anisotropic expansion. Associations between hormone signaling and cell wall biosynthesis have long been suggested, but recently direct links have been found revealing hormones play key regulatory roles in cellulose biosynthesis. The radially swollen 1 (rsw1) allele of Arabidopsis thaliana CESA1 harbors a single amino acid change that renders the protein unstable at high temperatures. We used the conditional nature of rsw1 to investigate how auxin contributes to isotropic growth. We found that exogenous auxin treatment reduces isotropic swelling in rsw1 roots at the restrictive temperature of 30�C. We also discovered decreases in auxin influx between rsw1 and wild-type roots via confocal imaging of AUX1-YFP, even at the permissive temperature of 19�C. Moreover, rsw1 displayed mis-expression of auxin-responsive and CESA genes. Additionally, we found altered auxin maxima in rsw1 mutant roots at the onset of swelling using DII-VENUS and DR5:vYFP auxin reporters. Overall, we conclude disrupted cell wall biosynthesis perturbs auxin transport leading to altered auxin homeostasis impacting both anisotropic and isotropic growth that affects overall root morphology.
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Affiliation(s)
- Thiel A Lehman
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
| | - Karen A Sanguinet
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, USA
- Molecular Plant Sciences Graduate Group, Washington State University, Pullman, WA, USA
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Scenedesnus rotundus isolated from the petroleum effluent employs alternate mechanisms of tolerance to elevated levels of Cadmium and Zinc. Sci Rep 2019; 9:8485. [PMID: 31186431 PMCID: PMC6560090 DOI: 10.1038/s41598-019-44374-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Accepted: 02/19/2019] [Indexed: 01/24/2023] Open
Abstract
Scenedesmus rotundus was isolated from metal contaminated petroleum industry effluent and its tolerance to Cadmium and Zinc was tested using different concentrations of CdCl2 and ZnCl2 ranging from 0.001 mM to 1.0 mM of Cd and 0.03 mM to 1.21 mM of Zn amended in Bolds Basal medium. The changes in cell count recorded at regular intervals upto a period of 24 days revealed a concentration dependent inhibition in growth. Concentration of the metal, at which 50% of the cells are live and metabolically active referred to as EC50 was calculated as 0.04 mM for Cd and 0.2 mM for Zn. Further, the effect of EC50 of the metals on the protein content, uptake of metals at varying pH, oxidative stress markers including lipid peroxidation, protein oxidation andnd oxygen uptake, levels of enzymatic antioxidants such as catalase and superoxide dismutase and non-enzymatic antioxidants namely, GSH and PC4 were determined. Though a direct correlation could not be drawn between pH and metal uptake, the compartmentalization of the metal during the lag phase and exponential phase was evident, most of the metal was present in extracellular fractions in the former, while in the later it was internalized. Our study shows a clear correlation between toxicity of Cd and the ability of the algae to synthesize PC4 from GSH and chelate it leading to detoxification, while Zn treatment led to an increase in the activity of catalase and superoxide dismutase and replete GSH pools. Further the changes in the cell wall structure at EC50 of Cd and Zn were studied. This is the first report on effect of heavy metals on the structural modifications of the cell wall of Scenedesmus in general and Scenedesmus rotundus in particular, indicating appearance of granules on the entire cell surface in both Cd and Zn treatments, with the degree of granulation increasing in the order of pH 12 > 10 > 8 in Cd treatment. Further structures of higher order resembling minute wheels are observed in Cd treated cells are also reported.
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Molecular insight into the wetting behavior and amphiphilic character of cellulose nanocrystals. Adv Colloid Interface Sci 2019; 267:15-25. [PMID: 30884357 DOI: 10.1016/j.cis.2019.02.003] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 02/27/2019] [Accepted: 02/27/2019] [Indexed: 02/05/2023]
Abstract
The study of nanocellulose is a field of growing interest due to its many applications and its use in the development of biocompatible and eco-friendly materials. In spite of the vast number of studies in the field, many questions about the role of the molecular structure in the properties of cellulose are still subject of debate. One of these fundamental questions is the possible amphiphilic nature of cellulose and the relative role of hydrogen bonding and hydrophobic effect on the interactions of cellulose. In this work we present an extensive molecular dynamics simulation study of this question by analyzing the wetting of cellulose with water and organic solvent, its interaction with hydrophilic and hydrophobic ions and its interaction with a protein (human epidermal growth factor, hEGF). We consider two characteristic cellulose crystal planes of Iβ cellulose with very different roughness, different hydrogen bonding capability and different exposure of cellulose hydrophobic groups (the (010) plane which has exposed -OH groups and the (100) plane with buried -OH groups). Our results show that both surfaces are simultaneously hydrophilic and lipophilic, with both surfaces having very similar contact angles. In spite of the global similarity of wetting of both surfaces, the molecular details of wetting are very different and substantial local wetting heterogeneities (which strongly depend on the surface) appear for both solvents. We also observe a weak interaction of both surfaces with hydrophobic and hydrophilic solutes. These weak interactions are attributed to the simultaneous lipophilic and hydrophilic character of both (100) and (010) cellulose surfaces. Interestingly, we found a substantial interaction of both cellulose planes with polar and apolar residues of the hEGF protein.
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Stalker MR, Grant J, Yong CW, Ohene-Yeboah LA, Mays TJ, Parker SC. Molecular simulation of hydrogen storage and transport in cellulose. MOLECULAR SIMULATION 2019. [DOI: 10.1080/08927022.2019.1593975] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- M. R. Stalker
- Centre for Sustainable Chemical Technologies, University of Bath, Bath, UK
- Department of Chemistry, University of Bath, Bath, UK
| | - J. Grant
- Department of Chemistry, University of Bath, Bath, UK
- Computing Services, University of Bath, Bath, UK
| | - C. W. Yong
- Scientific Computing Department, STFC Daresbury Laboratory, Daresbury, UK
| | - L. A. Ohene-Yeboah
- Centre for Sustainable Chemical Technologies, University of Bath, Bath, UK
- Department of Chemistry, University of Bath, Bath, UK
| | - T. J. Mays
- Department of Chemical Engineering, University of Bath, Bath, UK
| | - S. C. Parker
- Department of Chemistry, University of Bath, Bath, UK
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Rongpipi S, Ye D, Gomez ED, Gomez EW. Progress and Opportunities in the Characterization of Cellulose - An Important Regulator of Cell Wall Growth and Mechanics. FRONTIERS IN PLANT SCIENCE 2019; 9:1894. [PMID: 30881371 PMCID: PMC6405478 DOI: 10.3389/fpls.2018.01894] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Accepted: 12/06/2018] [Indexed: 05/02/2023]
Abstract
The plant cell wall is a dynamic network of several biopolymers and structural proteins including cellulose, pectin, hemicellulose and lignin. Cellulose is one of the main load bearing components of this complex, heterogeneous structure, and in this way, is an important regulator of cell wall growth and mechanics. Glucan chains of cellulose aggregate via hydrogen bonds and van der Waals forces to form long thread-like crystalline structures called cellulose microfibrils. The shape, size, and crystallinity of these microfibrils are important structural parameters that influence mechanical properties of the cell wall and these parameters are likely important determinants of cell wall digestibility for biofuel conversion. Cellulose-cellulose and cellulose-matrix interactions also contribute to the regulation of the mechanics and growth of the cell wall. As a consequence, much emphasis has been placed on extracting valuable structural details about cell wall components from several techniques, either individually or in combination, including diffraction/scattering, microscopy, and spectroscopy. In this review, we describe efforts to characterize the organization of cellulose in plant cell walls. X-ray scattering reveals the size and orientation of microfibrils; diffraction reveals unit lattice parameters and crystallinity. The presence of different cell wall components, their physical and chemical states, and their alignment and orientation have been identified by Infrared, Raman, Nuclear Magnetic Resonance, and Sum Frequency Generation spectroscopy. Direct visualization of cell wall components, their network-like structure, and interactions between different components has also been made possible through a host of microscopic imaging techniques including scanning electron microscopy, transmission electron microscopy, and atomic force microscopy. This review highlights advantages and limitations of different analytical techniques for characterizing cellulose structure and its interaction with other wall polymers. We also delineate emerging opportunities for future developments of structural characterization tools and multi-modal analyses of cellulose and plant cell walls. Ultimately, elucidation of the structure of plant cell walls across multiple length scales will be imperative for establishing structure-property relationships to link cell wall structure to control of growth and mechanics.
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Affiliation(s)
- Sintu Rongpipi
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, United States
| | - Dan Ye
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, United States
| | - Enrique D. Gomez
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, United States
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, PA, United States
- Materials Research Institute, The Pennsylvania State University, University Park, PA, United States
| | - Esther W. Gomez
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, United States
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, United States
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Fraczyk J, Kamiński ZJ. N-Lipidated Amino Acids and Peptides Immobilizedon Cellulose Able to Split Amide Bonds. MATERIALS 2019; 12:ma12040578. [PMID: 30769907 PMCID: PMC6416662 DOI: 10.3390/ma12040578] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Revised: 02/10/2019] [Accepted: 02/11/2019] [Indexed: 12/02/2022]
Abstract
N-lipidated short peptides and amino acids immobilized on the cellulose were used as catalysts cleaved amide bonds under biomimetic conditions. In order to select catalytically most active derivatives a library of 156 N-lipidated amino acids, dipeptides and tripeptides immobilized on cellulose was obtained. The library was synthesized from serine, histidine and glutamic acid peptides N-acylated with heptanoic, octanoic, hexadecanoic and (E)-octadec-9-enoic acids. Catalytic efficiency was monitored by spectrophotometric determination of p-nitroaniline formed by the hydrolysis of a 0.1 M solution of Z-Leu-NP. The most active 8 structures contained tripeptide fragment with 1-3 serine residues. It has been found that incorporation of metal ions into catalytic pockets increase the activity of the synzymes. The structures of the 17 most active catalysts selected from the library of complexes obtained with Cu2+ ion varied from 16 derivatives complexed with Zn2+ ion. For all of them, a very high reaction rate during the preliminary phase of measurements was followed by a substantial slowdown after 1 h. The catalytic activity gradually diminished after subsequent re-use. HPLC analysis of amide bond splitting confirmed that substrate consumption proceeded in two stages. In the preliminary stage 24–40% of the substrate was rapidly hydrolysed followed by the substantially lower reaction rate. Nevertheless, using the most competent synzymes product of hydrolysis was formed with a yield of 60–83% after 48h under mild and strictly biomimetic conditions.
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Affiliation(s)
- Justyna Fraczyk
- Institute of Organic Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Zbigniew J Kamiński
- Institute of Organic Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
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