1
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Marino C, Bordoni AV. Deoxy sugars. General methods for carbohydrate deoxygenation and glycosidation. Org Biomol Chem 2022; 20:934-962. [PMID: 35014646 DOI: 10.1039/d1ob02001c] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Deoxy sugars represent an important class of carbohydrates, present in a large number of biomolecules involved in multiple biological processes. In various antibiotics, antimicrobials, and therapeutic agents the presence of deoxygenated units has been recognized as responsible for biological roles, such as adhesion or great affinity to receptors, or improved efficacy. The characterization of glycosidases and glycosyltranferases requires substrates, inhibitors and analogous compounds. Deoxygenated sugars are useful for carrying out specific studies for these enzymes. Deoxy sugars, analogs of natural substrates, may behave as substrates or inhibitors, or may not interact with the enzyme. They are also important for glycodiversification studies of bioactive natural products and glycobiological processes, which could contribute to discovering new therapeutic agents with greater efficacy by modification or replacement of sugar units. Deoxygenation of carbohydrates is, thus, of great interest and numerous efforts have been dedicated to the development of methods for the reduction of sugar hydroxyl groups. Given that carbohydrates are the most important renewable chemicals and are more oxidized than fossil raw materials, it is also important to have methods to selectively remove oxygen from certain atoms of these renewable raw materials. The different methods for removal of OH groups of carbohydrates and representative or recent applications of them are presented in this chapter. Glycosidic bonds in general, and 2-deoxy glycosidic linkages, are included. It is not the scope of this survey to cover all reports for each specific technique.
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Affiliation(s)
- Carla Marino
- CIHIDECAR, Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Pabellón II, Ciudad Universitaria, 1428 Buenos Aires, Argentina.
| | - Andrea V Bordoni
- Gerencia Química & Instituto de Nanociencia y Nanotecnología - Centro Atómico Constituyentes, Comisión Nacional de Energía Atómica, CONICET, Av. Gral. Paz 1499, B1650KNA San Martín, Buenos Aires, Argentina
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2
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Escopy S, Demchenko AV. Transition-Metal-Mediated Glycosylation with Thioglycosides. Chemistry 2021; 28:e202103747. [PMID: 34935219 DOI: 10.1002/chem.202103747] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Indexed: 11/09/2022]
Abstract
Thioglycosides are among the most common glycosyl donors that find broad application in the synthesis of glycans and glycoconjugates. However, the requirement for toxic and/or large access of activators needed for common glycosylations with thioglycosides remains a notable drawback. Due to the increased awareness of the chemical waste impact on the environment, synthetic studies have been driven by the goal of finding non-toxic reagents. The main focus of this review is to highlight recent methods for thioglycoside activation that rely on transition metal catalysis.
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Affiliation(s)
- Samira Escopy
- University of Missouri - St. Louis, Chemistry, UNITED STATES
| | - Alexei V Demchenko
- Saint Louis University, Chemistry, 3501 Laclede Ave, 63103, St. Louis, UNITED STATES
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3
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Pavic Q, Pillot A, Tasseau O, Legentil L, Tranchimand S. Improvement of the versatility of an arabinofuranosidase against galactofuranose for the synthesis of galactofuranoconjugates. Org Biomol Chem 2019; 17:6799-6808. [DOI: 10.1039/c9ob01162e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
A new performant biocatalyst was developed for the synthesis ofO-,S- and acyl-galactofuranoconjugates.
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Affiliation(s)
- Quentin Pavic
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Aline Pillot
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Olivier Tasseau
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Laurent Legentil
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Sylvain Tranchimand
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
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4
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Pavic Q, Tranchimand S, Lemiègre L, Legentil L. Diversion of a thioglycoligase for the synthesis of 1-O-acyl arabinofuranoses. Chem Commun (Camb) 2018; 54:5550-5553. [DOI: 10.1039/c8cc01726c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
An arabinofuranosylhydrolase from the GH51 family was transformed into an acyl transferase by mutation of the catalytic acid/base amino acid.
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Affiliation(s)
- Quentin Pavic
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Sylvain Tranchimand
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Loïc Lemiègre
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
| | - Laurent Legentil
- Univ Rennes
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- ISCR – UMR 6226
- F-35000 Rennes
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5
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Downey AM, Hocek M. Strategies toward protecting group-free glycosylation through selective activation of the anomeric center. Beilstein J Org Chem 2017; 13:1239-1279. [PMID: 28694870 PMCID: PMC5496566 DOI: 10.3762/bjoc.13.123] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Accepted: 06/01/2017] [Indexed: 12/13/2022] Open
Abstract
Glycosylation is an immensely important biological process and one that is highly controlled and very efficient in nature. However, in a chemical laboratory the process is much more challenging and usually requires the extensive use of protecting groups to squelch reactivity at undesired reactive moieties. Nonetheless, by taking advantage of the differential reactivity of the anomeric center, a selective activation at this position is possible. As a result, protecting group-free strategies to effect glycosylations are available thanks to the tremendous efforts of many research groups. In this review, we showcase the methods available for the selective activation of the anomeric center on the glycosyl donor and the mechanisms by which the glycosylation reactions take place to illustrate the power these techniques.
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Affiliation(s)
- A Michael Downey
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, 16610 Prague 6, Czech Republic
| | - Michal Hocek
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, 16610 Prague 6, Czech Republic
- Department of Organic Chemistry, Faculty of Science, Charles University in Prague, 12843 Prague 2, Czech Republic
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6
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Chlubnová I, Králová B, Dvořáková H, Spiwok V, Filipp D, Nugier-Chauvin C, Daniellou R, Ferrières V. Biocatalyzed synthesis of difuranosides and their ability to trigger production of TNF-α. Bioorg Med Chem Lett 2016; 26:1550-1553. [PMID: 26876932 DOI: 10.1016/j.bmcl.2016.02.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 02/05/2016] [Accepted: 02/07/2016] [Indexed: 10/22/2022]
Abstract
Transglycosylation reactions biocatalyzed by the native arabinofuranosidase Araf51 and using d-galactosyl, d-fucosyl and 6-deoxy-6-fluoro-D-galactosyl derivatives as donors and acceptors provided di-to pentahexofuranosides. The immunostimulatory potency of these compounds, and more especially their ability to induce production of TNF-α, was evaluated on the murine macrophage cell line, Raw 264.7. The results obtained showed concentration-dependent and most importantly, structure-dependent responses. Interestingly, oligoarabinofuranosides belonging to the oligopentafuranoside family displayed concentration-, chain length and aglycon-dependent bioactivities irrespective of their fine chemical variations. Thus, neo-oligofuranosides in D-Galf series, as well as their D-Fucf and 6-fluorinated counterparts are indeed potential sources of immunostimulating agents.
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Affiliation(s)
- Ilona Chlubnová
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France; Université européenne de Bretagne, France; Department of Biochemistry and Microbiology, Institute of Chemical Technology of Prague, Techniká 3, 166 28 Prague 6, Czech Republic; Laboratory of Immunobiology, Institute of Molecular Genetics AS CR, Videnska 1083, 142 20 Prague 4, Czech Republic
| | - Blanka Králová
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France; Department of Biochemistry and Microbiology, Institute of Chemical Technology of Prague, Techniká 3, 166 28 Prague 6, Czech Republic
| | - Hana Dvořáková
- Department of Biochemistry and Microbiology, Institute of Chemical Technology of Prague, Techniká 3, 166 28 Prague 6, Czech Republic; Laboratory of NMR Spectroscopy, Institute of Chemical Technology of Prague, Techniká 5, 166 28 Prague 6, Czech Republic
| | - Vojtěch Spiwok
- Department of Biochemistry and Microbiology, Institute of Chemical Technology of Prague, Techniká 3, 166 28 Prague 6, Czech Republic
| | - Dominik Filipp
- Laboratory of Immunobiology, Institute of Molecular Genetics AS CR, Videnska 1083, 142 20 Prague 4, Czech Republic
| | - Caroline Nugier-Chauvin
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France; Université européenne de Bretagne, France
| | - Richard Daniellou
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France; Université européenne de Bretagne, France
| | - Vincent Ferrières
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7, France; Université européenne de Bretagne, France.
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7
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Dureau R, Gicquel M, Artur I, Guégan JP, Carboni B, Ferrières V, Berrée F, Legentil L. Synthesis and evaluation of 1,2-trans alkyl galactofuranoside mimetics as mycobacteriostatic agents. Org Biomol Chem 2015; 13:4940-52. [DOI: 10.1039/c5ob00296f] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The strong interaction of an octyl chain with M. smegmatis cells was paired with high specificity of the galactofuranose ring against mycobacteria growth.
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Affiliation(s)
- Rémy Dureau
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
| | - Maxime Gicquel
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
| | - Isabelle Artur
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
| | - Jean-Paul Guégan
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
| | - Bertrand Carboni
- Institut des Sciences Chimiques de Rennes
- UMR 6226 CNRS – Université de Rennes1
- 35042 Rennes Cedex
- France
- Université européenne de Bretagne
| | - Vincent Ferrières
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
| | - Fabienne Berrée
- Institut des Sciences Chimiques de Rennes
- UMR 6226 CNRS – Université de Rennes1
- 35042 Rennes Cedex
- France
- Université européenne de Bretagne
| | - Laurent Legentil
- Ecole Nationale Supérieure de Chimie de Rennes
- CNRS
- UMR 6226
- 35708 Rennes Cedex 7
- France
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8
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Marino C, Baldoni L. Synthesis of D-galactofuranose-containing molecules: design of galactofuranosyl acceptors. Chembiochem 2014; 15:188-204. [PMID: 24420700 DOI: 10.1002/cbic.201300638] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Indexed: 11/11/2022]
Abstract
D-Galactofuranose (D-Galf) is present in glycoconjugates of several pathogenic microorganisms but is absent in mammals, so it is a good target for the development of chemotherapeutic agents for the treatment of microbial infections. This fact has increased interest in the synthesis of D-Galf-containing molecules for corresponding glycobiological studies. The synthesis of oligosaccharides, glycoconjugates, and mimetics of D-Galf requires specific methods for the preparation of galactose derivatives in the furanosic configuration, the synthesis of appropriate acceptors, and efficient glycosylation methods for the construction of α- and β-D-Galf linkages. This review summarizes the different strategies developed for the preparation of partially protected derivatives of D-Galf, suitable as acceptors for the construction of (1→2), (1→3), (1→5), and (1→6) link- ages, and describes recent applications.
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Affiliation(s)
- Carla Marino
- CIHIDECAR-CONICET-UBA, Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Pabellón II, Ciudad Universitaria, 1428 Buenos Aires (Argentina).
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9
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Hamon N, Quintiliani M, Balzarini J, McGuigan C. Synthesis and biological evaluation of prodrugs of 2-fluoro-2-deoxyribose-1-phosphate and 2,2-difluoro-2-deoxyribose-1-phosphate. Bioorg Med Chem Lett 2013; 23:2555-9. [PMID: 23541671 PMCID: PMC7127338 DOI: 10.1016/j.bmcl.2013.02.117] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2013] [Revised: 02/26/2013] [Accepted: 02/28/2013] [Indexed: 12/24/2022]
Abstract
We report in this Letter the synthesis of prodrugs of 2-fluoro-2-deoxyarabinose-1-phosphate and 2,2-difluoro-2-deoxyribose-1-phosphate. We demonstrate the difficulty of realising a phosphorylation step on the anomeric position of 2-deoxyribose, and we discover that introduction of fluorine atoms on the 2 position of 2-deoxyribose enables the phosphorylation step: in fact, the stability of the prodrugs increases with the degree of 2-fluorination. Stability studies of produgs of 2-fluoro-2-deoxyribose-1-phosphate and 2,2-difluoro-2-deoxyribose-1-phosphate in acidic and neutral conditions were conducted to confirm our observation. Biological evaluation of prodrugs of 2,2-difluoro-2-deoxyribose-1-phosphate for antiviral and cytotoxic activity is reported.
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Affiliation(s)
- Nadege Hamon
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University, King Edward VII Avenue, Cardiff CF10 3NB, UK
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10
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Baldoni L, Marino C. Synthesis of S- and C-galactofuranosides via a galactofuranosyl iodide. Isolable 1-galactofuranosylthiol derivative as a new glycosyl donor. Carbohydr Res 2012; 362:70-8. [DOI: 10.1016/j.carres.2012.08.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2012] [Revised: 08/26/2012] [Accepted: 08/27/2012] [Indexed: 12/12/2022]
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11
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Hasty SJ, Demchenko AV. Glycosyl Thioimidates as Versatile Building Blocks for Organic Synthesis. Chem Heterocycl Compd (N Y) 2012; 48. [PMID: 24288416 DOI: 10.1007/s10593-012-0984-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
This review discusses the synthesis and application of glycosyl thioimidates in chemical glycosylation and oligosaccharide assembly. Although glycosyl thioimidates include a broad range of compounds, the discussion herein centers on S-benzothiazolyl (SBaz), S-benzoxazolyl (SBox), S-thiazolinyl (STaz), and S-benzimidazolyl (SBiz) glycosides. These heterocyclic moieties have recently emerged as excellent anomeric leaving groups that express unique characteristics for highly diastereoselective glycosylation and help to provide the streamlined access to oligosaccharides.
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Affiliation(s)
- S J Hasty
- University of Missouri - St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
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12
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Dureau R, Legentil L, Daniellou R, Ferrières V. Two-step synthesis of per-O-acetylfuranoses: optimization and rationalization. J Org Chem 2012; 77:1301-7. [PMID: 22283704 DOI: 10.1021/jo201913f] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A simple two-step procedure yielding peracetylated furanoses directly from free aldoses was implemented. Key steps of the method are (i) highly selective formation of per-O-(tert-butyldimethylsilyl)furanoses and (ii) their clean conversion into acetyl ones without isomerization. This approach was easily applied to galactose and structurally related carbohydrates such as arabinose, fucose, methyl galacturonate and N-acetylgalactosamine to give the corresponding peracetylated targets. The success of this procedure relied on the control of at least three parameters: (i) the tautomeric equilibrium of the starting unprotected oses, (ii) the steric hindrance of both targeted furanoses and silylating agent, and finally, (iii) the reactivity of each soft nucleophile during the protecting group interconversion.
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Affiliation(s)
- Rémy Dureau
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, Avenue du Général Leclerc, CS 50837, 35708 Rennes Cedex 7, France
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13
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Hasty SJ, Kleine MA, Demchenko AV. S-Benzimidazolyl glycosides as a platform for oligosaccharide synthesis by an active-latent strategy. Angew Chem Int Ed Engl 2011; 50:4197-201. [PMID: 21433229 PMCID: PMC3150471 DOI: 10.1002/anie.201007212] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2010] [Revised: 01/19/2011] [Indexed: 11/11/2022]
Affiliation(s)
- Scott J. Hasty
- Department of Chemistry and Biochemistry, University of Missouri—St. Louis, One University Boulevard, St. Louis, MO 63121 (USA)
| | - Matthew A. Kleine
- Department of Chemistry and Biochemistry, University of Missouri—St. Louis, One University Boulevard, St. Louis, MO 63121 (USA)
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri—St. Louis, One University Boulevard, St. Louis, MO 63121 (USA)
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14
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Hasty SJ, Kleine MA, Demchenko AV. S-Benzimidazolyl Glycosides as a Platform for Oligosaccharide Synthesis by an Active-Latent Strategy. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201007212] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Wagner GK, Pesnot T, Field RA. A survey of chemical methods for sugar-nucleotide synthesis. Nat Prod Rep 2009; 26:1172-94. [PMID: 19693414 DOI: 10.1039/b909621n] [Citation(s) in RCA: 111] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Gerd K Wagner
- School of Chemical Sciences and Pharmacy, University of East Anglia, Norwich, NR4 7TJ, UK.
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17
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18
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Peltier P, Guégan JP, Daniellou R, Nugier-Chauvin C, Ferrières V. Stereoselective Chemoenzymatic Synthesis of UDP-1,2-cis-furanoses from α,β-Furanosyl 1-Phosphates. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800742] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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19
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Peltier P, Euzen R, Daniellou R, Nugier-Chauvin C, Ferrières V. Recent knowledge and innovations related to hexofuranosides: structure, synthesis and applications. Carbohydr Res 2008; 343:1897-923. [DOI: 10.1016/j.carres.2008.02.010] [Citation(s) in RCA: 123] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2007] [Revised: 02/08/2008] [Accepted: 02/12/2008] [Indexed: 10/22/2022]
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20
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Timmons SC, Hui JPM, Pearson JL, Peltier P, Daniellou R, Nugier-Chauvin C, Soo EC, Syvitski RT, Ferrières V, Jakeman DL. Enzyme-catalyzed synthesis of furanosyl nucleotides. Org Lett 2007; 10:161-3. [PMID: 18092787 DOI: 10.1021/ol7023949] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A bacterial alpha-d-glucopyranosyl-1-phosphate thymidylyltransferase was found to couple four hexofuranosyl-1-phosphates, as well as a pentofuranosyl-1-phosphate, with deoxythymidine 5'-triphosphate, providing access to furanosyl nucleotides. The enzymatic reaction mixtures were analyzed by electrospray ionization mass spectrometry and NMR spectroscopy to determine the anomeric stereochemistry of furanosyl nucleotide products. This is the first demonstration of a nucleotidylyltransferase discriminating between diastereomeric mixtures of sugar-1-phosphates to produce stereopure, biologically relevant furanosyl nucleotides.
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Affiliation(s)
- Shannon C Timmons
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada
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21
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Peltier P, Daniellou R, Nugier-Chauvin C, Ferrières V. Versatile synthesis of rare nucleotide furanoses. Org Lett 2007; 9:5227-30. [PMID: 17997566 DOI: 10.1021/ol702392x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Direct activation of unprotected thioimidoyl furanosides yielded in only one step and few minutes a panel of rare uridine 5'-diphospho-furanoses. Diastereoselectivity of the reaction was tightly connected with reaction time, temperature, and nature of the furanosyl donor. This approach was totally selective since no ring expansion from the initial five-membered ring to the more stable pyranose form was observed.
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Affiliation(s)
- Pauline Peltier
- Ecole Nationale Supérieure de Chimie de Rennes, Organic and Supramolecular Chemistry, CNRS, Avenue du Général Leclerc, F-35700 Rennes
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22
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Lopez G, Nugier-Chauvin C, Rémond C, O'Donohue M. Investigation of the specificity of an α-l-arabinofuranosidase using C-2 and C-5 modified α-l-arabinofuranosides. Carbohydr Res 2007; 342:2202-11. [PMID: 17601513 DOI: 10.1016/j.carres.2007.06.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2007] [Revised: 05/25/2007] [Accepted: 06/02/2007] [Indexed: 10/23/2022]
Abstract
The synthesis of three novel glycosyl donors presenting the same scaffold as alpha-L-arabinofuranose but modified at the C-2 or C-5 positions has been achieved. Furthermore, chemoenzymatic syntheses using the alpha-L-arabinofuranosidase AbfD3 and these unnatural furanosides were investigated. The use of the novel p-nitrophenyl furanoside donors revealed that AbfD3 can perform transglycosylation with the C-5 deoxygenated donor but not with the C-2 modified one. These results emphasize the vital role for OH-2 in AbfD3 substrate recognition.
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Affiliation(s)
- Gérald Lopez
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226 Sciences Chimiques de Rennes, Equipe Synthèse Organique et Systèmes Organisés, Avenue du Général Leclerc, F-35700 Rennes, France
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23
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Kamat MN, De Meo C, Demchenko AV. S-benzoxazolyl as a stable protecting moiety and a potent anomeric leaving group in oligosaccharide synthesis. J Org Chem 2007; 72:6947-55. [PMID: 17676919 PMCID: PMC2535572 DOI: 10.1021/jo071191s] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
As a part of a program for developing new versatile building blocks for stereoselective glycosylation and convergent oligosaccharide synthesis, we demonstrated that S-benzoxazolyl (SBox) glycosides are stable toward major protecting group manipulations employed in carbohydrate chemistry. On the other hand, they can be glycosidated under relatively mild reaction conditions to afford either 1,2-trans or 1,2-cis-linked disaccharides. Selective and chemoselective activations of the SBox moiety were also proved to be feasible, which was demonstrated by synthesizing a number of oligosaccharide sequences.
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Affiliation(s)
- Medha N. Kamat
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA; e-mail
| | - Cristina De Meo
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA; e-mail
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA; e-mail
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Kamat MN, Rath NP, Demchenko AV. Versatile synthesis and mechanism of activation of S-benzoxazolyl glycosides. J Org Chem 2007; 72:6938-46. [PMID: 17676918 PMCID: PMC2535574 DOI: 10.1021/jo0711844] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
As a part of a program for developing new efficient procedures for stereoselective glycosylation, a range of S-benzoxazolyl (SBox) glycosides have been synthesized. The mechanistic aspects of the SBox moiety activation for glycosylation via a variety of conceptually different pathways in the presence of thiophilic, electrophilic, or metal-based promoters have been investigated.
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Affiliation(s)
- Medha N. Kamat
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
| | - Nigam P. Rath
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri – St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
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Euzen R, Guégan JP, Ferrières V, Plusquellec D. First O-Glycosylation from Unprotected 1-Thioimidoyl Hexofuranosides Assisted by Divalent Cations. J Org Chem 2007; 72:5743-7. [PMID: 17602592 DOI: 10.1021/jo070741j] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The preparation of O-hexofuranosides was accomplished from unprotected 1-thioimidoyl furanosides as donors. The present methodology was first used for the synthesis of octyl galactofuranoside and further extended to D-galactofuranose-containing disaccharides. Within this study, we emphasized the need for additional complexing cations to maintain the furanose ring in its initial size. After experimentation, calcium ion was first used concomitantly with trimethylsilyl trifluoromethanesulfonate, the latter being able to activate the thioimidate and the former being likely to inhibit ring expansion. Moreover, an improvement was performed by using copper(II) trifluoromethanesulfonate which could then meet the requirements as both promoter and complexing agent.
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Affiliation(s)
- Ronan Euzen
- Sciences Chimiques de Rennes, Ecole Nationale Supérieure de Chimie de Rennes, CNRS, Avenue du Général Leclerc, F-35700 Rennes, France
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26
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Affiliation(s)
| | - Deboprosad Mondal
- Department of Chemistry, Florida Atlantic University, Boca Raton, FL 33431,
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27
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Lopez G, Daniellou R, O'Donohue M, Ferrières V, Nugier-Chauvin C. Thioimidoyl furanosides as first inhibitors of the α-l-arabinofuranosidase AbfD3. Bioorg Med Chem Lett 2007; 17:434-8. [PMID: 17071084 DOI: 10.1016/j.bmcl.2006.10.032] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2006] [Revised: 10/12/2006] [Accepted: 10/12/2006] [Indexed: 10/24/2022]
Abstract
Two sets of five thioimidoyl alpha-L-arabino- and beta-D-galactofuranosides were designed, synthesized and subjected to docking studies to evaluate their ability to be recognized by the active site of the alpha-L-arabinofuranosidase AbfD3. Further in vitro assays showed that the targeted furanosides are the first potent inhibitors of this furanosyl hydrolase and that the most efficient one, the thiazolyl alpha-L-arabinofuranoside 1, is a competitive inhibitor having a KI of 1.4 microM.
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Affiliation(s)
- Gérald Lopez
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, Team Organic Synthesis and Organized Systems, Avenue du Général Leclerc, F-35700 Rennes, France
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28
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Euzen R, Ferrières V, Plusquellec D. Synthesis of galactofuranose-containing disaccharides using thioimidoyl-type donors. Carbohydr Res 2006; 341:2759-68. [PMID: 17056021 DOI: 10.1016/j.carres.2006.10.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2006] [Revised: 09/28/2006] [Accepted: 10/02/2006] [Indexed: 10/24/2022]
Abstract
Four galactofuranose-containing disaccharides have been prepared utilising various thioimidates [Galf-SC(NR)XR'] and suitably protected acceptors as key precursors. We observed that the efficiency of the coupling reactions was particularly dependent on the aglycon present on the furanosyl donor when copper(II) ions were used as the promoter, and that activation could be correlated with the nature of the third heteroatom, X.
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Affiliation(s)
- Ronan Euzen
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, Avenue du Général Leclerc, F-35700 Rennes, France
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Pornsuriyasak P, Demchenko AV. S-Thiazolinyl (STaz) Glycosides as Versatile Building Blocks for Convergent Selective, Chemoselective, and Orthogonal Oligosaccharide Synthesis. Chemistry 2006; 12:6630-46. [PMID: 16800023 DOI: 10.1002/chem.200600262] [Citation(s) in RCA: 86] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
In the aim of developing new procedures for efficient oligosaccharide assembly, a range of S-thiazolinyl (STaz) glycosides have been synthesized. These novel derivatives were evaluated against a variety of reaction conditions and were shown to be capable of being chemoselectively activated in the armed-disarmed fashion. Moreover, the S-thiazolinyl moiety exhibited a remarkable propensity for selective activation over other common leaving groups. Conversely, a variety of leaving groups could be selectively activated over the STaz moiety, which, in turn, allowed STaz/S-ethyl and STaz/S-phenyl orthogonal approaches. To demonstrate versatility of novel STaz derivatives, a number of oligosaccharide targets have been synthesized in a convergent selective, orthogonal, and chemoselective fashion.
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Affiliation(s)
- Papapida Pornsuriyasak
- Department of Chemistry and Biochemistry, University of Missouri--St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
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Euzen R, Lopez G, Nugier-Chauvin C, Ferrières V, Plusquellec D, Rémond C, O’Donohue M. A Chemoenzymatic Approach for the Synthesis of Unnatural Disaccharides ContainingD-Galacto- orD-Fucofuranosides. European J Org Chem 2005. [DOI: 10.1002/ejoc.200500525] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Ramakrishnan A, Pornsuriyasak P, Demchenko AV. Synthesis, Glycosidation, and Hydrolytic Stability of Novel Glycosyl Thioimidates. J Carbohydr Chem 2005. [DOI: 10.1080/07328300500176387] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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