1
|
Ketteridge MN, Watt DR, Duncan KM, Barcenas G, Shaw K, Knowlton WB, Yurke B, Pensack RD, Mass OA, Li L. Influence of Substituents on the Vectorial Difference Static Dipole Upon Excitation in Synthetic Bacteriochlorins. J Phys Chem A 2024; 128:7581-7592. [PMID: 39226435 DOI: 10.1021/acs.jpca.4c03821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
Organic dye aggregates have been shown to exhibit exciton delocalization in natural and synthetic systems. Such dye aggregates show promise in the emerging area of quantum information science (QIS). We believe that the difference in static dipole (Δd) is an essential dye parameter in the development of molecular QIS systems. However, a foundational understanding of the structural factors influencing Δd remains elusive. Bacteriochlorins play a vital role in photosynthesis due to their exceptional photophysical properties. Therefore, bacteriochlorins are particularly suitable dyes for the construction of aggregate systems for QIS. Synthetic bacteriochlorins further offer stability and tunability via chemical modifications. Here, the influence of substituents on the Δd of monomeric (nonaggregated) dyes was investigated via density functional theory (DFT) and time-dependent (TD)DFT in a set of 5-methoxybacteriochlorins progressively substituted with ethynyl, phenyl, and phenylethynyl substituents at the 3,13 and 3,13,15 positions of the macrocycle. Symmetrically substituted 5-methoxybacteriochlorins were shown to have the largest Δd. The increase in Δd in the series of dyes was largely due to changes in the orientation of the static dipole upon excitation rather than large changes in magnitude. In addition, the transition dipole (μ) and the angle between Δd and μ (ζ) were calculated. Three 5-methoxybacteriochlorins with large predicted Δd and μ values were synthesized and characterized spectroscopically. The trend in Δd values empirically determined using the solvatochromic Stokes shift method was comparable to the DFT calculations.
Collapse
Affiliation(s)
- Maia N Ketteridge
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Devan R Watt
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Katelyn M Duncan
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - German Barcenas
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Kaden Shaw
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - William B Knowlton
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department of Electrical and Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Bernard Yurke
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department of Electrical and Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Ryan D Pensack
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Olga A Mass
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Lan Li
- Micron School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Center for Advanced Energy Studies, Idaho Falls, Idaho 83401, United States
| |
Collapse
|
2
|
Sheng Z, Jiang T, Li W, Shuai Z. TD-DMRG Study of Exciton Dynamics with both Thermal and Static Disorders for Fenna-Matthews-Olson Complex. J Chem Theory Comput 2024. [PMID: 39087905 DOI: 10.1021/acs.jctc.4c00493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
Photosynthesis is a fundamental process that converts solar energy into chemical energy. Understanding the microscopic mechanisms of energy transfer in photosynthetic systems is crucial for the development of novel optoelectronic materials. Simulating these processes poses significant challenges due to the intricate interactions between electrons and phonons, compounded by static disorder. In this work, we present a numerically nearly exact study using the time-dependent density matrix renormalization group (TD-DMRG) method to simulate the quantum dynamics of the Fenna-Matthews-Olson (FMO) complex considering an eight-site model with both thermal and static disorders. We employ the thermo-field dynamics formalism for temperature effects. We merge all electronic interactions into one large matrix product state (MPS) site, boosting accuracy efficiently without increasing complexity. Previous combined experimental and computational studies indicated that the static disorders range from 30 to 90 cm-1 for different FMO sites. We employ a Gaussian distribution and the auxiliary bosonic operator approach to consider the static disorder in our TD-DMRG algorithm. We investigate the impact of different initial excitation sites, temperatures, and degrees of static disorder on the exciton dynamics and temporal coherence. It is found that under the influence of the experimentally determined static disorder strength, the exciton population evolution shows a non-negligible difference at zero temperature, while it is hardly affected at room temperature.
Collapse
Affiliation(s)
- Zirui Sheng
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen 518172, P. R. China
| | - Tong Jiang
- MOE Key Laboratory of Organic OptoElectronics and Molecular Engineering, Department of Chemistry, Tsinghua University, 100084 Beijing, P. R. China
| | - Weitang Li
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen 518172, P. R. China
| | - Zhigang Shuai
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen 518172, P. R. China
- MOE Key Laboratory of Organic OptoElectronics and Molecular Engineering, Department of Chemistry, Tsinghua University, 100084 Beijing, P. R. China
| |
Collapse
|
3
|
Gharbi AM, Biswas DS, Crégut O, Malý P, Didier P, Klymchenko A, Léonard J. Exciton annihilation and diffusion length in disordered multichromophoric nanoparticles. NANOSCALE 2024; 16:11550-11563. [PMID: 38868990 DOI: 10.1039/d4nr00325j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
Efficient exciton transport is the essential property of natural and synthetic light-harvesting (LH) devices. Here we investigate exciton transport properties in LH organic polymer nanoparticles (ONPs) of 40 nm diameter. The ONPs are loaded with a rhodamine B dye derivative and bulky counterion, enabling dye loadings as high as 0.3 M, while preserving fluorescence quantum yields larger than 30%. We use time-resolved fluorescence spectroscopy to monitor exciton-exciton annihilation (EEA) kinetics within the ONPs dispersed in water. We demonstrate that unlike the common practice for photoluminescence investigations of EEA, the non-uniform intensity profile of the excitation light pulse must be taken into account to analyse reliably intensity-dependent population dynamics. Alternatively, a simple confocal detection scheme is demonstrated, which enables (i) retrieving the correct value for the bimolecular EEA rate which would otherwise be underestimated by a typical factor of three, and (ii) revealing minor EEA by-products otherwise unnoticed. Considering the ONPs as homogeneous rigid solutions of weakly interacting dyes, we postulate an incoherent exciton hoping mechanism to infer a diffusion constant exceeding 0.003 cm2 s-1 and a diffusion length as large as 70 nm. This work demonstrates the success of the present ONP design strategy at engineering efficient exciton transport in disordered multichromophoric systems.
Collapse
Affiliation(s)
| | | | - Olivier Crégut
- IPCMS, Université de Strasbourg - CNRS, Strasbourg, France.
| | - Pavel Malý
- Charles University, Prague, Czech Republic
| | | | | | | |
Collapse
|
4
|
Meskers SCJ. The Exciton Model for Molecular Materials: Past, Present and Future? Chemphyschem 2023:e202300666. [PMID: 38010974 DOI: 10.1002/cphc.202300666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 10/09/2023] [Indexed: 11/29/2023]
Abstract
In assemblies of identical molecules or chromophores, electronic excitations can be described as excitons, bound electron-hole pairs that can move from site to site as a pair in a coherent manner. The understanding of excitons is crucial when trying to engineer favorable photophysical properties through structuring organic molecular matter. In recent decades, limitations of the concept of an exciton have become clear. The exciton can hybridize with phonon and photons. To clarify these issues, the exciton is discussed within the broader context of the gauge properties of the electromagnetic force.
Collapse
Affiliation(s)
- Stefan C J Meskers
- Molecular Materials and Nanosystems Institute for Complex Molecular Systems, Department of Chemical Engineering and Chemistry, Eindhoven university of Technology, 5600 MB, Eindhoven, The Netherlands
| |
Collapse
|
5
|
Basu S, Roy SK, Barcenas G, Li L, Yurke B, Knowlton WB, Lee J. Enhanced Photo-Cross-Linking of Thymines in DNA Holliday Junction-Templated Squaraine Dimers. Biochemistry 2023; 62:3234-3244. [PMID: 37906841 DOI: 10.1021/acs.biochem.3c00471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Programmable self-assembly of dyes using DNA templates to promote exciton delocalization in dye aggregates is gaining considerable interest. New methods to improve the rigidity of the DNA scaffold and thus the stability of the molecular dye aggregates to encourage exciton delocalization are desired. In these dye-DNA constructs, one potential way to increase the stability of the aggregates is to create an additional covalent bond via photo-cross-linking reactions between thymines in the DNA scaffold. Specifically, we report an approach to increase the yield of photo-cross-linking reaction between thymines in the core of a DNA Holliday junction while limiting the damage from UV irradiation to DNA. We investigated the effect of the distance between thymines on the photo-cross-linking reaction yields by using linkers with different lengths to tether the dyes to the DNA templates. By comprehensively evaluating the photo-cross-linking reaction yields of dye-DNA aggregates using linkers with different lengths, we conclude that interstrand thymines tend to photo-cross-link more efficiently with short linkers. A higher cross-linking yield was achieved due to the shorter intermolecular distance between thymines influenced by strong dye-dye interactions. Our method establishes the possibility of improving the stability of DNA-scaffolded dye aggregates, thereby expanding their use in exciton-based applications such as light harvesting, nanoscale computing, quantum computing, and optoelectronics.
Collapse
Affiliation(s)
- Shibani Basu
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Simon K Roy
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
| | - German Barcenas
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Lan Li
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Bernard Yurke
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
| | - William B Knowlton
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
- Department of Electrical & Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Jeunghoon Lee
- Micron School of Materials Science & Engineering, Boise State University, Boise, Idaho 83725, United States
- Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| |
Collapse
|
6
|
Cook RL, Ko L, Whaley KB. A quantum trajectory picture of single photon absorption and energy transport in photosystem II. J Chem Phys 2023; 159:134108. [PMID: 37795784 DOI: 10.1063/5.0168631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 09/12/2023] [Indexed: 10/06/2023] Open
Abstract
We use quantum trajectory theory to study the dynamics of the first step in photosynthesis for a single photon interacting with photosystem II (PSII). By considering individual trajectories we are able to look beyond the ensemble average dynamics to compute the PSII system evolution conditioned upon individual photon counting measurements. Measurements of the transmitted photon beam strongly affects the system state, since detection of an outgoing photon confirms that the PSII must be in the electronic ground state, while a null measurement implies it is in an excited electronic state. We show that under ideal conditions, observing the null result transforms a state with a low excited state population to a state with nearly all population contained in the excited states. We study the PSII dynamics conditioned on such photon counting for both a pure excitonic model of PSII and a more realistic model with exciton-phonon coupling to a dissipative phononic environment. In the absence of such coupling, we show that the measured fluorescence rates show oscillations constituting a photon-counting witness of excitonic coherence. Excitonic coupling to the phonon environment has a strong effect on the observed rates of fluorescence, damping the oscillations. Addition of non-radiative decay and incoherent transitions to radical pair states in the reaction center to the phononic model allows extraction of a quantum efficiency of 92.5% from the long-time evolution, consistent with bulk experimental measurements.
Collapse
Affiliation(s)
- Robert L Cook
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Liwen Ko
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - K Birgitta Whaley
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| |
Collapse
|
7
|
Thwaites O, Christianson BM, Cowan AJ, Jäckel F, Liu LN, Gardner AM. Unravelling the Roles of Integral Polypeptides in Excitation Energy Transfer of Photosynthetic RC-LH1 Supercomplexes. J Phys Chem B 2023; 127:7283-7290. [PMID: 37556839 PMCID: PMC10461223 DOI: 10.1021/acs.jpcb.3c04466] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 07/24/2023] [Indexed: 08/11/2023]
Abstract
Elucidating the photosynthetic processes that occur within the reaction center-light-harvesting 1 (RC-LH1) supercomplexes from purple bacteria is crucial for uncovering the assembly and functional mechanisms of natural photosynthetic systems and underpinning the development of artificial photosynthesis. Here, we examined excitation energy transfer of various RC-LH1 supercomplexes of Rhodobacter sphaeroides using transient absorption spectroscopy, coupled with lifetime density analysis, and studied the roles of the integral transmembrane polypeptides, PufX and PufY, in energy transfer within the RC-LH1 core complex. Our results show that the absence of PufX increases both the LH1 → RC excitation energy transfer lifetime and distribution due to the role of PufX in defining the interaction and orientation of the RC within the LH1 ring. While the absence of PufY leads to the conformational shift of several LH1 subunits toward the RC, it does not result in a marked change in the excitation energy transfer lifetime.
Collapse
Affiliation(s)
- Owen Thwaites
- Stephenson
Institute of Renewable Energy, University
of Liverpool, Liverpool L69 7ZF, U.K.
- Department
of Physics, University of Liverpool, Liverpool L69 7ZE, U.K.
| | - Bern M. Christianson
- Institute
of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K.
| | - Alexander J. Cowan
- Stephenson
Institute of Renewable Energy, University
of Liverpool, Liverpool L69 7ZF, U.K.
- Department
of Chemistry, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Frank Jäckel
- Stephenson
Institute of Renewable Energy, University
of Liverpool, Liverpool L69 7ZF, U.K.
- Department
of Physics, University of Liverpool, Liverpool L69 7ZE, U.K.
| | - Lu-Ning Liu
- Institute
of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K.
- College
of Marine Life Sciences, and Frontiers Science Center for Deep Ocean
Multispheres and Earth System, Ocean University
of China, Qingdao 266003, China
| | - Adrian M. Gardner
- Stephenson
Institute of Renewable Energy, University
of Liverpool, Liverpool L69 7ZF, U.K.
- Department
of Chemistry, University of Liverpool, Liverpool L69 7ZD, U.K.
- Early Career
Laser Laboratory, University of Liverpool, Liverpool L69 3BX, U.K.
| |
Collapse
|
8
|
Mok WK, Asenjo-Garcia A, Sum TC, Kwek LC. Dicke Superradiance Requires Interactions beyond Nearest Neighbors. PHYSICAL REVIEW LETTERS 2023; 130:213605. [PMID: 37295080 DOI: 10.1103/physrevlett.130.213605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 04/18/2023] [Accepted: 05/01/2023] [Indexed: 06/12/2023]
Abstract
Photon-mediated interactions within an excited ensemble of emitters can result in Dicke superradiance, where the emission rate is greatly enhanced, manifesting as a high-intensity burst at short times. The superradiant burst is most commonly observed in systems with long-range interactions between the emitters, although the minimal interaction range remains unknown. Here, we put forward a new theoretical method to bound the maximum emission rate by upper bounding the spectral radius of an auxiliary Hamiltonian. We harness this tool to prove that for an arbitrary ordered array with only nearest-neighbor interactions in all dimensions, a superradiant burst is not physically observable. We show that Dicke superradiance requires minimally the inclusion of next-nearest-neighbor interactions. For exponentially decaying interactions, the critical coupling is found to be asymptotically independent of the number of emitters in all dimensions, thereby defining the threshold interaction range where the collective enhancement balances out the decoherence effects. Our findings provide key physical insights to the understanding of collective decay in many-body quantum systems, and the designing of superradiant emission in physical systems for applications such as energy harvesting and quantum sensing.
Collapse
Affiliation(s)
- Wai-Keong Mok
- Centre for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
- California Institute of Technology, Pasadena, California 91125, USA
| | - Ana Asenjo-Garcia
- Department of Physics, Columbia University, New York, New York 10027, USA
| | - Tze Chien Sum
- Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371, Singapore
| | - Leong-Chuan Kwek
- Centre for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
- MajuLab, CNRS-UNS-NUS-NTU International Joint Research Unit, Singapore UMI 3654, Singapore
- National Institute of Education, Nanyang Technological University, Singapore 637616, Singapore
- Quantum Science and Engineering Centre (QSec), Nanyang Technological University, 50 Nanyang Ave, Singapore 639798, Singapore
| |
Collapse
|
9
|
Dani R, Kundu S, Makri N. Coherence Maps and Flow of Excitation Energy in the Bacterial Light Harvesting Complex 2. J Phys Chem Lett 2023; 14:3835-3843. [PMID: 37067041 DOI: 10.1021/acs.jpclett.3c00670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
We present and analyze coherence maps [ J. Phys. Chem. B 2022, 126, 9361-9375] to investigate the quantum coherences that are created, sustained, and damped by vibrational modes during the transfer of excitation energy from the B800 (outer) to the B850 (inner) ring of the light harvesting complex 2 (LH2) of purple bacteria with a variety of initial conditions. The reduced density matrix of the 24-pigment complex, where the ground and excited electronic states of each bacteriochlorophyll are explicitly coupled to 50 intramolecular vibrations at room temperature, is obtained from fully quantum-mechanical small matrix path integral (SMatPI) calculations. The coherence maps show a very rapid localization within the outer ring, accompanied by the formation of inter-ring quantum superpositions that evolve to a partial quantum delocalization at equilibrium, and quantify in state-to-state detail the flow of energy within the complex.
Collapse
Affiliation(s)
- Reshmi Dani
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Sohang Kundu
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
- Department of Physics, University of Illinois, Urbana, Illinois 61801, United States
- Illinois Quantum Information Science and Technology Center, University of Illinois, Urbana, Illinois 61801, United States
| |
Collapse
|
10
|
Abstract
Biological pigment-protein complexes (PPCs) exhibit a remarkable ability to tune the optical properties of biological excitons (bioexcitons) through specific pigment-protein interactions. While such fine-tuning allows natural systems (e.g., photosynthetic proteins) to carry out their native functions with near-optimal performance, native function itself is often suboptimal for applications such as biofuel production or quantum technology development. This perspective offers a look at near-term prospects for the rational reoptimization of PPC bioexcitons for new functions using site-directed mutagenesis. The primary focus is on the "structure-spectrum" challenge of understanding the relationships between structural features and spectroscopic properties. While recent examples demonstrate that site-directed mutagenesis can be used to tune nearly all key bioexciton parameters (e.g., site energies, interpigment couplings, and electronic-vibrational interactions), critical challenges remain before we achieve truly rational design of bioexciton properties.
Collapse
Affiliation(s)
- Mike Reppert
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| |
Collapse
|
11
|
Curti M, Maffeis V, Teixeira Alves Duarte LG, Shareef S, Hallado LX, Curutchet C, Romero E. Engineering excitonically coupled dimers in an artificial protein for light harvesting via computational modeling. Protein Sci 2023; 32:e4579. [PMID: 36715022 PMCID: PMC9951196 DOI: 10.1002/pro.4579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/23/2023] [Accepted: 01/25/2023] [Indexed: 01/31/2023]
Abstract
In photosynthesis, pigment-protein complexes achieve outstanding photoinduced charge separation efficiencies through a set of strategies in which excited states delocalization over multiple pigments ("excitons") and charge-transfer states play key roles. These concepts, and their implementation in bioinspired artificial systems, are attracting increasing attention due to the vast potential that could be tapped by realizing efficient photochemical reactions. In particular, de novo designed proteins provide a diverse structural toolbox that can be used to manipulate the geometric and electronic properties of bound chromophore molecules. However, achieving excitonic and charge-transfer states requires closely spaced chromophores, a non-trivial aspect since a strong binding with the protein matrix needs to be maintained. Here, we show how a general-purpose artificial protein can be optimized via molecular dynamics simulations to improve its binding capacity of a chlorophyll derivative, achieving complexes in which chromophores form two closely spaced and strongly interacting dimers. Based on spectroscopy results and computational modeling, we demonstrate each dimer is excitonically coupled, and propose they display signatures of charge-transfer state mixing. This work could open new avenues for the rational design of chromophore-protein complexes with advanced functionalities.
Collapse
Affiliation(s)
- Mariano Curti
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST)TarragonaSpain
| | - Valentin Maffeis
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST)TarragonaSpain
- Laboratoire de Chimie, UMR 5182, ENS Lyon, CNRSUniversité Lyon 1LyonFrance
| | | | - Saeed Shareef
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST)TarragonaSpain
- Departament de Química Física i InorgànicaUniversitat Rovira i VirgiliTarragonaSpain
| | - Luisa Xiomara Hallado
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST)TarragonaSpain
- Departament de Química Física i InorgànicaUniversitat Rovira i VirgiliTarragonaSpain
| | - Carles Curutchet
- Departament de Farmàcia i Tecnologia Farmacèutica i Fisicoquímica, Facultat de Farmàcia i Ciències de l'AlimentacióUniversitat de Barcelona (UB)BarcelonaSpain
- Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona (UB)BarcelonaSpain
| | - Elisabet Romero
- Institute of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Science and Technology (BIST)TarragonaSpain
| |
Collapse
|
12
|
Effect of Substituent Location on the Relationship between the Transition Dipole Moments, Difference Static Dipole, and Hydrophobicity in Squaraine Dyes for Quantum Information Devices. Molecules 2023; 28:molecules28052163. [PMID: 36903409 PMCID: PMC10004711 DOI: 10.3390/molecules28052163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 02/11/2023] [Accepted: 02/15/2023] [Indexed: 03/03/2023] Open
Abstract
Aggregates of organic dyes that exhibit excitonic coupling have a wide array of applications, including medical imaging, organic photovoltaics, and quantum information devices. The optical properties of a dye monomer, as a basis of dye aggregate, can be modified to strengthen excitonic coupling. Squaraine (SQ) dyes are attractive for those applications due to their strong absorbance peak in the visible range. While the effects of substituent types on the optical properties of SQ dyes have been previously examined, the effects of various substituent locations have not yet been investigated. In this study, density functional theory (DFT) and time-dependent density functional theory (TD-DFT) were used to investigate the relationships between SQ substituent location and several key properties of the performance of dye aggregate systems, namely, difference static dipole (Δd), transition dipole moment (μ), hydrophobicity, and the angle (θ) between Δd and μ. We found that attaching substituents along the long axis of the dye could increase μ while placement off the long axis was shown to increase Δd and reduce θ. The reduction in θ is largely due to a change in the direction of Δd as the direction of μ is not significantly affected by substituent position. Hydrophobicity decreases when electron-donating substituents are located close to the nitrogen of the indolenine ring. These results provide insight into the structure-property relationships of SQ dyes and guide the design of dye monomers for aggregate systems with desired properties and performance.
Collapse
|
13
|
Elvers I, Nguyen-Phan TC, Gardiner AT, Hunter CN, Cogdell RJ, Köhler J. Phasor Analysis Reveals Multicomponent Fluorescence Kinetics in the LH2 Complex from Marichromatium purpuratum. J Phys Chem B 2022; 126:10335-10346. [PMID: 36449272 DOI: 10.1021/acs.jpcb.2c04983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
We investigated the fluorescence kinetics of LH2 complexes from Marichromatium purpuratum, the cryo-EM structure of which has been recently elucidated with 2.4 Å resolution. The experiments have been carried out as a function of the excitation density by varying both the excitation fluence and the repetition rate of the laser excitation. Instead of the usual multiexponential fitting procedure, we applied the less common phasor formalism for evaluating the transients because this allows for a model-free analysis of the data without a priori knowledge about the number of processes that contribute to a particular decay. For the various excitation conditions, this analysis reproduces consistently three lifetime components with decay times below 100 ps, 500 ps, and 730 ps, which were associated with the quenched state, singlet-triplet annihilation, and fluorescence decay, respectively. Moreover, it reveals that the number of decay components that contribute to the transients depends on whether the excitation wavelength is in resonance with the B800 BChl a molecules or with the carotenoids. Based on the mutual arrangement of the chromophores in their binding pockets, this leads us to conclude that the energy transfer pathways within the LH2 complex of this species differ significantly from each other for exciting either the B800 BChl molecules or the carotenoids. Finally, we speculate whether the illumination with strong laser light converts the LH2 complexes studied here into a quenched conformation that might be related to the development of the non-photochemical quenching mechanism that occurs in higher plants.
Collapse
Affiliation(s)
- Inga Elvers
- Spectroscopy of Soft Matter, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany
| | - Tu C Nguyen-Phan
- School of Infection and Immunity, Glasgow University, Glasgow G12 8TA, U.K
| | - Alastair T Gardiner
- Laboratory of Anoxygenic Phototrophs, Institute of Microbiology, Czech Academy of Sciences, 379 81 Třeboň, Czech Republic
| | - C Neil Hunter
- School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Richard J Cogdell
- School of Molecular Biosciences, Glasgow University, Glasgow G12 8QQ, U.K
| | - Jürgen Köhler
- Spectroscopy of Soft Matter, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany.,Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany.,Bavarian Polymer Institute, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany
| |
Collapse
|
14
|
Magdaong NCM, Jing H, Diers JR, Kirmaier C, Lindsey JS, Bocian DF, Holten D. Probing the Effects of Electronic-Vibrational Resonance on the Rate of Excited-State Energy Transfer in Bacteriochlorin Dyads. J Phys Chem Lett 2022; 13:7906-7910. [PMID: 35980198 DOI: 10.1021/acs.jpclett.2c02154] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The impact of vibrational-electronic resonances on the rate of excited-state energy transfer is examined in a set of bacteriochlorin dyads that employ the same phenylethyne linker. The donor/acceptor excited-state energy gap is tuned from ∼200 to ∼1100 cm-1 using peripheral substituents on the donor and acceptor bacteriochlorin macrocycles. Ultrafast energy transfer is observed with rate constants of (0.3 ps)-1 to (1.7 ps)-1, which agree with those predicted by Förster theory to within a factor of 2. Furthermore, the measured rates follow a trend-line with only small deviations that do not correlate with the density of vibrations at the donor/acceptor excited-state energy gap. Thus, if vibrational-electronic resonances occur in any of these dyads, which seems likely, the impact on the rate of energy transfer is small.
Collapse
Affiliation(s)
- Nikki Cecil M Magdaong
- Department of Chemistry, Washington University, St. Louis, Missouri63130-4889, United States
| | - Haoyu Jing
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina27695-8204, United States
| | - James R Diers
- Department of Chemistry, University of California, Riverside, Riverside, California92521-0403, United States
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri63130-4889, United States
| | - Jonathan S Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina27695-8204, United States
| | - David F Bocian
- Department of Chemistry, University of California, Riverside, Riverside, California92521-0403, United States
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri63130-4889, United States
| |
Collapse
|
15
|
Ko L, Cook RL, Whaley KB. Dynamics of photosynthetic light harvesting systems interacting with N-photon Fock states. J Chem Phys 2022; 156:244108. [DOI: 10.1063/5.0082822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We develop a method to simulate the excitonic dynamics of realistic photosynthetic light harvesting systems, including non-Markovian coupling to phonon degrees of freedom, under excitation by N-photon Fock state pulses. This method combines the input–output and the hierarchical equations of motion formalisms into a double hierarchy of density matrix equations. We show analytically that under weak field excitation relevant to natural photosynthesis conditions, an N-photon Fock state input and a corresponding coherent state input give rise to equal density matrices in the excited manifold. However, an N-photon Fock state input induces no off-diagonal coherence between the ground and excited subspaces, in contrast with the coherences created by a coherent state input. We derive expressions for the probability to absorb a single Fock state photon with or without the influence of phonons. For short pulses (or, equivalently, wide bandwidth pulses), we show that the absorption probability has a universal behavior that depends only upon a system-dependent effective energy spread parameter Δ and an exciton–light coupling constant Γ. This holds for a broad range of chromophore systems and for a variety of pulse shapes. We also analyze the absorption probability in the opposite long pulse (narrow bandwidth) regime. We then derive an expression for the long time emission rate in the presence of phonons and use it to study the difference between collective vs independent emission. Finally, we present a numerical simulation for the LHCII monomer (14-mer) system under single photon excitation that illustrates the use of the double hierarchy equations.
Collapse
Affiliation(s)
- Liwen Ko
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, USA
| | - Robert L. Cook
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, USA
| | - K. Birgitta Whaley
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, USA
| |
Collapse
|
16
|
Trebbia JB, Deplano Q, Tamarat P, Lounis B. Tailoring the superradiant and subradiant nature of two coherently coupled quantum emitters. Nat Commun 2022; 13:2962. [PMID: 35618729 PMCID: PMC9135760 DOI: 10.1038/s41467-022-30672-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 05/12/2022] [Indexed: 11/22/2022] Open
Abstract
The control and manipulation of quantum-entangled states is crucial for the development of quantum technologies. A promising route is to couple solid-state quantum emitters through their optical dipole-dipole interactions. Entanglement in itself is challenging, as it requires both nanometric distances between emitters and nearly degenerate electronic transitions. Here we implement hyperspectral imaging to identify pairs of coupled dibenzanthanthrene molecules, and find distinctive spectral signatures of maximally entangled superradiant and subradiant electronic states by tuning the molecular optical resonances with Stark effect. We demonstrate far-field selective excitation of the long-lived subradiant delocalized state with a laser field tailored in amplitude and phase. Optical nanoscopy of the coupled molecules unveils spatial signatures that result from quantum interferences in their excitation pathways and reveal the location of each emitter. Controlled electronic-states superposition will help deciphering more complex physical or biological mechanisms governed by the coherent coupling and developing quantum information schemes.
Collapse
Affiliation(s)
- J-B Trebbia
- Univ Bordeaux, LP2N, F-33405, Talence, France
- Institut d'Optique & CNRS, LP2N, F-33405, Talence, France
| | - Q Deplano
- Univ Bordeaux, LP2N, F-33405, Talence, France
- Institut d'Optique & CNRS, LP2N, F-33405, Talence, France
| | - P Tamarat
- Univ Bordeaux, LP2N, F-33405, Talence, France
- Institut d'Optique & CNRS, LP2N, F-33405, Talence, France
| | - B Lounis
- Univ Bordeaux, LP2N, F-33405, Talence, France.
- Institut d'Optique & CNRS, LP2N, F-33405, Talence, France.
| |
Collapse
|
17
|
Exact simulation of pigment-protein complexes unveils vibronic renormalization of electronic parameters in ultrafast spectroscopy. Nat Commun 2022; 13:2912. [PMID: 35614049 PMCID: PMC9133012 DOI: 10.1038/s41467-022-30565-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/04/2022] [Indexed: 12/04/2022] Open
Abstract
The primary steps of photosynthesis rely on the generation, transport, and trapping of excitons in pigment-protein complexes (PPCs). Generically, PPCs possess highly structured vibrational spectra, combining many discrete intra-pigment modes and a quasi-continuous of protein modes, with vibrational and electronic couplings of comparable strength. The intricacy of the resulting vibronic dynamics poses significant challenges in establishing a quantitative connection between spectroscopic data and underlying microscopic models. Here we show how to address this challenge using numerically exact simulation methods by considering two model systems, namely the water-soluble chlorophyll-binding protein of cauliflower and the special pair of bacterial reaction centers. We demonstrate that the inclusion of the full multi-mode vibronic dynamics in numerical calculations of linear spectra leads to systematic and quantitatively significant corrections to electronic parameter estimation. These multi-mode vibronic effects are shown to be relevant in the longstanding discussion regarding the origin of long-lived oscillations in multidimensional nonlinear spectra. Multimode vibronic mixing in model photosynthetic systems revealed by numerically exact simulations is shown to strongly modify linear and non-linear optical responses and facilitate the persistence of coherent dynamics.
Collapse
|
18
|
Aiello CD, Abendroth JM, Abbas M, Afanasev A, Agarwal S, Banerjee AS, Beratan DN, Belling JN, Berche B, Botana A, Caram JR, Celardo GL, Cuniberti G, Garcia-Etxarri A, Dianat A, Diez-Perez I, Guo Y, Gutierrez R, Herrmann C, Hihath J, Kale S, Kurian P, Lai YC, Liu T, Lopez A, Medina E, Mujica V, Naaman R, Noormandipour M, Palma JL, Paltiel Y, Petuskey W, Ribeiro-Silva JC, Saenz JJ, Santos EJG, Solyanik-Gorgone M, Sorger VJ, Stemer DM, Ugalde JM, Valdes-Curiel A, Varela S, Waldeck DH, Wasielewski MR, Weiss PS, Zacharias H, Wang QH. A Chirality-Based Quantum Leap. ACS NANO 2022; 16:4989-5035. [PMID: 35318848 PMCID: PMC9278663 DOI: 10.1021/acsnano.1c01347] [Citation(s) in RCA: 61] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
There is increasing interest in the study of chiral degrees of freedom occurring in matter and in electromagnetic fields. Opportunities in quantum sciences will likely exploit two main areas that are the focus of this Review: (1) recent observations of the chiral-induced spin selectivity (CISS) effect in chiral molecules and engineered nanomaterials and (2) rapidly evolving nanophotonic strategies designed to amplify chiral light-matter interactions. On the one hand, the CISS effect underpins the observation that charge transport through nanoscopic chiral structures favors a particular electronic spin orientation, resulting in large room-temperature spin polarizations. Observations of the CISS effect suggest opportunities for spin control and for the design and fabrication of room-temperature quantum devices from the bottom up, with atomic-scale precision and molecular modularity. On the other hand, chiral-optical effects that depend on both spin- and orbital-angular momentum of photons could offer key advantages in all-optical and quantum information technologies. In particular, amplification of these chiral light-matter interactions using rationally designed plasmonic and dielectric nanomaterials provide approaches to manipulate light intensity, polarization, and phase in confined nanoscale geometries. Any technology that relies on optimal charge transport, or optical control and readout, including quantum devices for logic, sensing, and storage, may benefit from chiral quantum properties. These properties can be theoretically and experimentally investigated from a quantum information perspective, which has not yet been fully developed. There are uncharted implications for the quantum sciences once chiral couplings can be engineered to control the storage, transduction, and manipulation of quantum information. This forward-looking Review provides a survey of the experimental and theoretical fundamentals of chiral-influenced quantum effects and presents a vision for their possible future roles in enabling room-temperature quantum technologies.
Collapse
Affiliation(s)
- Clarice D. Aiello
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Electrical and Computer Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - John M. Abendroth
- Laboratory
for Solid State Physics, ETH Zürich, Zürich 8093, Switzerland
| | - Muneer Abbas
- Department
of Microbiology, Howard University, Washington, D.C. 20059, United States
| | - Andrei Afanasev
- Department
of Physics, George Washington University, Washington, D.C. 20052, United States
| | - Shivang Agarwal
- Department
of Electrical and Computer Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Amartya S. Banerjee
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Materials Science and Engineering, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - David N. Beratan
- Departments
of Chemistry, Biochemistry, and Physics, Duke University, Durham, North Carolina 27708, United States
| | - Jason N. Belling
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - Bertrand Berche
- Laboratoire
de Physique et Chimie Théoriques, UMR Université de Lorraine-CNRS, 7019 54506 Vandœuvre les
Nancy, France
| | - Antia Botana
- Department
of Physics, Arizona State University, Tempe, Arizona 85287, United States
| | - Justin R. Caram
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - Giuseppe Luca Celardo
- Institute
of Physics, Benemerita Universidad Autonoma
de Puebla, Apartado Postal J-48, 72570, Mexico
- Department
of Physics and Astronomy, University of
Florence, 50019 Sesto Fiorentino, Italy
| | - Gianaurelio Cuniberti
- Institute
for Materials Science and Max Bergmann Center of Biomaterials, Dresden University of Technology, 01062 Dresden, Germany
| | - Aitzol Garcia-Etxarri
- Donostia
International Physics Center, Paseo Manuel de Lardizabal 4, 20018 Donostia, San Sebastian, Spain
- IKERBASQUE,
Basque Foundation for Science, Maria Diaz de Haro 3, 48013 Bilbao, Spain
| | - Arezoo Dianat
- Institute
for Materials Science and Max Bergmann Center of Biomaterials, Dresden University of Technology, 01062 Dresden, Germany
| | - Ismael Diez-Perez
- Department
of Chemistry, Faculty of Natural and Mathematical Sciences, King’s College London, 7 Trinity Street, London SE1 1DB, United Kingdom
| | - Yuqi Guo
- School
for Engineering of Matter, Transport and Energy, Arizona State University, Tempe, Arizona 85287, United States
| | - Rafael Gutierrez
- Institute
for Materials Science and Max Bergmann Center of Biomaterials, Dresden University of Technology, 01062 Dresden, Germany
| | - Carmen Herrmann
- Department
of Chemistry, University of Hamburg, 20146 Hamburg, Germany
| | - Joshua Hihath
- Department
of Electrical and Computer Engineering, University of California, Davis, Davis, California 95616, United States
| | - Suneet Kale
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - Philip Kurian
- Quantum
Biology Laboratory, Graduate School, Howard
University, Washington, D.C. 20059, United States
| | - Ying-Cheng Lai
- School
of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, United States
| | - Tianhan Liu
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - Alexander Lopez
- Escuela
Superior Politécnica del Litoral, ESPOL, Campus Gustavo Galindo Km. 30.5 Vía Perimetral, PO Box 09-01-5863, Guayaquil 090902, Ecuador
| | - Ernesto Medina
- Departamento
de Física, Colegio de Ciencias e Ingeniería, Universidad San Francisco de Quito, Av. Diego de Robles
y Vía Interoceánica, Quito 170901, Ecuador
| | - Vladimiro Mujica
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
- Kimika
Fakultatea, Euskal Herriko Unibertsitatea, 20080 Donostia, Euskadi, Spain
| | - Ron Naaman
- Department
of Chemical and Biological Physics, Weizmann
Institute of Science, Rehovot 76100, Israel
| | - Mohammadreza Noormandipour
- Department
of Electrical and Computer Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
- TCM Group,
Cavendish Laboratory, University of Cambridge, J.J. Thomson Avenue, Cambridge CB3 0HE, United Kingdom
| | - Julio L. Palma
- Department
of Chemistry, Pennsylvania State University, Lemont Furnace, Pennsylvania 15456, United States
| | - Yossi Paltiel
- Applied
Physics Department and the Center for Nano-Science and Nano-Technology, Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - William Petuskey
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - João Carlos Ribeiro-Silva
- Laboratory
of Genetics and Molecular Cardiology, Heart Institute, University of São Paulo Medical School, 05508-900 São
Paulo, Brazil
| | - Juan José Saenz
- Donostia
International Physics Center, Paseo Manuel de Lardizabal 4, 20018 Donostia, San Sebastian, Spain
- IKERBASQUE,
Basque Foundation for Science, Maria Diaz de Haro 3, 48013 Bilbao, Spain
| | - Elton J. G. Santos
- Institute
for Condensed Matter Physics and Complex Systems, School of Physics
and Astronomy, The University of Edinburgh, Edinburgh EH9 3FD, United Kingdom
- Higgs Centre
for Theoretical Physics, The University
of Edinburgh, Edinburgh, EH9 3FD, United Kingdom
| | - Maria Solyanik-Gorgone
- Department
of Electrical and Computer Engineering, George Washington University, Washington, D.C. 20052, United States
| | - Volker J. Sorger
- Department
of Electrical and Computer Engineering, George Washington University, Washington, D.C. 20052, United States
| | - Dominik M. Stemer
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Materials Science and Engineering, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - Jesus M. Ugalde
- Kimika
Fakultatea, Euskal Herriko Unibertsitatea, 20080 Donostia, Euskadi, Spain
| | - Ana Valdes-Curiel
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Electrical and Computer Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Solmar Varela
- School
of Chemical Sciences and Engineering, Yachay
Tech University, 100119 Urcuquí, Ecuador
| | - David H. Waldeck
- Department
of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Michael R. Wasielewski
- Department
of Chemistry, Center for Molecular Quantum Transduction, and Institute
for Sustainability and Energy at Northwestern, Northwestern University, Evanston, Illinois 60208-3113, United States
| | - Paul S. Weiss
- California
NanoSystems Institute, University of California,
Los Angeles, Los Angeles, California 90095, United States
- Department
of Materials Science and Engineering, University
of California, Los Angeles, Los Angeles, California 90095, United States
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, Los Angeles, California 90095, United States
- Department
of Bioengineering, University of California,
Los Angeles, Los Angeles, California, 90095, United States
| | - Helmut Zacharias
- Center
for Soft Nanoscience, University of Münster, 48149 Münster, Germany
| | - Qing Hua Wang
- School
for Engineering of Matter, Transport and Energy, Arizona State University, Tempe, Arizona 85287, United States
| |
Collapse
|
19
|
Holmes J, Sushma AA, Tsvetkova IB, Schaich WL, Schaller RD, Dragnea B. Ultrafast Collective Excited-State Dynamics of a Virus-Supported Fluorophore Antenna. J Phys Chem Lett 2022; 13:3237-3243. [PMID: 35380843 PMCID: PMC9306353 DOI: 10.1021/acs.jpclett.2c00262] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Radiation brightening was recently observed in a multifluorophore-conjugated brome mosaic virus (BMV) particle at room temperature under pulsed excitation. On the basis of its nonlinear dependence on the number of chromophores, the origins of the phenomenon were attributed to a collective relaxation. However, the mechanism remains unknown. We present ultrafast transient absorption and fluorescence spectroscopic studies which shed new light on the collective nature of the relaxation dynamics in such radiation-brightened, multifluorophore particles. Our findings indicate that the emission dynamics is consistent with a superradiance mechanism. The ratio between the rates of competing radiative and nonradiative relaxation pathways depends on the number of chromophores per virus. The findings suggest that small icosahedral virus shells provide a unique biological scaffold for developing nonclassical, deep subwavelength light sources and may open new avenues for the development of photonic probes for medical imaging applications.
Collapse
Affiliation(s)
- Joseph Holmes
- Physics Department, Indiana University, Bloomington, Indiana 47405, United States
| | - Arathi Anil Sushma
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Irina B Tsvetkova
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - William L Schaich
- Physics Department, Indiana University, Bloomington, Indiana 47405, United States
| | - Richard D Schaller
- The Center for Nanoscale Materials at Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Bogdan Dragnea
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| |
Collapse
|
20
|
Rajasree SS, Yu J, Pratik SM, Li X, Wang R, Kumbhar AS, Goswami S, Cramer CJ, Deria P. Superradiance and Directional Exciton Migration in Metal-Organic Frameworks. J Am Chem Soc 2022; 144:1396-1406. [PMID: 35029989 DOI: 10.1021/jacs.1c11979] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Crystalline metal-organic frameworks (MOFs) are promising synthetic analogues of photosynthetic light-harvesting complexes (LHCs). The precise assembly of linkers (organic chromophores) around the topology-defined pores offers the evolution of unique photophysical behaviors that are reminiscence of LHCs. These include MOF excited states with photoabsorbed energy that is spatially dispersed over multiple linkers defining the molecular excitons. The multilinker molecular excitons display superradiance─a hallmark of coupled oscillators seen in LHCs─with radiative rate constant (krad) exceeding that of a single linker. Our theoretical model and experimental results on three zirconium MOFs, namely, PCN-222(Zn), NU-1000, and SIU-100, with similar topology but varying linkers suggest that the size of such molecular excitons depends on the electronic symmetry of the linker. This multilinker exciton model effectively predicts the energy transfer rate constant; corresponding single-step exciton hopping time, ranging from a few picoseconds in SIU-100 and NU-1000 to a few hundreds of picoseconds in PCN-222(Zn), matches well with the experimental data. The model also predicts the anisotropy of exciton displacement with preferential migration along the crystallographic c-axis. Overall, these findings establish various missing links defining the exciton size and dynamics in MOF-assembled linkers. The understandings will provide design principles, especially, positioning the catalysts or electrode relative to the linker orientation for low-density solar energy conversion systems.
Collapse
Affiliation(s)
- Sreehari Surendran Rajasree
- Department of Chemistry and Biochemistry, Southern Illinois University, 1245 Lincoln Drive, Carbondale, Illinois 62901, United States
| | - Jierui Yu
- Department of Chemistry and Biochemistry, Southern Illinois University, 1245 Lincoln Drive, Carbondale, Illinois 62901, United States
| | - Saied Md Pratik
- Department of Chemistry, Minnesota Supercomputing Institute, and Chemical Theory Center, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Xinlin Li
- Department of Chemistry and Biochemistry, Southern Illinois University, 1245 Lincoln Drive, Carbondale, Illinois 62901, United States
| | - Rui Wang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Amar S Kumbhar
- Chapel Hill Analytical & Nanofabrication Laboratory, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Subhadip Goswami
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Christopher J Cramer
- Department of Chemistry, Minnesota Supercomputing Institute, and Chemical Theory Center, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Pravas Deria
- Department of Chemistry and Biochemistry, Southern Illinois University, 1245 Lincoln Drive, Carbondale, Illinois 62901, United States
| |
Collapse
|
21
|
Roy S, Mass OA, Kellis DL, Wilson CK, Hall JA, Yurke B, Knowlton WB. Exciton Delocalization and Scaffold Stability in Bridged Nucleotide-Substituted, DNA Duplex-Templated Cyanine Aggregates. J Phys Chem B 2021; 125:13670-13684. [PMID: 34894675 PMCID: PMC8713290 DOI: 10.1021/acs.jpcb.1c07602] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 11/04/2021] [Indexed: 11/28/2022]
Abstract
Molecular excitons play a foundational role in chromophore aggregates found in light-harvesting systems and offer potential applications in engineered excitonic systems. Controlled aggregation of chromophores to promote exciton delocalization has been achieved by covalently tethering chromophores to deoxyribonucleic acid (DNA) scaffolds. Although many studies have documented changes in the optical properties of chromophores upon aggregation using DNA scaffolds, more limited work has investigated how structural modifications of DNA via bridged nucleotides and chromophore covalent attachment impact scaffold stability as well as the configuration and optical behavior of attached aggregates. Here we investigated the impact of two types of bridged nucleotides, LNA and BNA, as a structural modification of duplex DNA-templated cyanine (Cy5) aggregates. The bridged nucleotides were incorporated in the domain of one to four Cy5 chromophores attached between adjacent bases of a DNA duplex. We found that bridged nucleotides increase the stability of DNA scaffolds carrying Cy5 aggregates in comparison with natural nucleotides in analogous constructs. Exciton coupling strength and delocalization in Cy5 aggregates were evaluated via steady-state absorption, circular dichroism, and theoretical modeling. Replacing natural nucleotides with bridged nucleotides resulted in a noticeable increase in the coupling strength (≥10 meV) between chromophores and increased H-like stacking behavior (i.e., more face-to-face stacking). Our results suggest that bridged nucleotides may be useful for increasing scaffold stability and coupling between DNA templated chromophores.
Collapse
Affiliation(s)
- Simon
K. Roy
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Olga A. Mass
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Donald L. Kellis
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - Christopher K. Wilson
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
| | - John A. Hall
- Division
of Research and Economic Development, Boise
State University, Boise, Idaho 83725, United States
| | - Bernard Yurke
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department
of Electrical & Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| | - William B. Knowlton
- Micron
School of Materials Science and Engineering, Boise State University, Boise, Idaho 83725, United States
- Department
of Electrical & Computer Engineering, Boise State University, Boise, Idaho 83725, United States
| |
Collapse
|
22
|
Anil Sushma A, Zhao B, Tsvetkova IB, Pérez-Segura C, Hadden-Perilla JA, Reilly JP, Dragnea B. Subset of Fluorophores Is Responsible for Radiation Brightening in Viromimetic Particles. J Phys Chem B 2021; 125:10494-10505. [PMID: 34507491 DOI: 10.1021/acs.jpcb.1c06395] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
In certain conditions, dye-conjugated icosahedral virus shells exhibit suppression of concentration quenching. The recently observed radiation brightening at high fluorophore densities has been attributed to coherent emission, i.e., to a cooperative process occurring within a subset of the virus-supported fluorophores. Until now, the distribution of fluorophores among potential conjugation sites and the nature of the active subset remained unknown. With the help of mass spectrometry and molecular dynamics simulations, we found which conjugation sites in the brome mosaic virus capsid are accessible to fluorophores. Reactive external surface lysines but also those at the lumenal interface where the coat protein N-termini are located showed virtually unrestricted access to dyes. The third type of labeled lysines was situated at the intercapsomeric interfaces. Through limited proteolysis of flexible N-termini, it was determined that dyes bound to them are unlikely to be involved in the radiation brightening effect. At the same time, specific labeling of genetically inserted cysteines on the exterior capsid surface alone did not lead to radiation brightening. The results suggest that lysines situated within the more rigid structural part of the coat protein provide the chemical environments conducive to radiation brightening, and we discuss some of the characteristics of these environments.
Collapse
Affiliation(s)
- Arathi Anil Sushma
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Bingqing Zhao
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Irina B Tsvetkova
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Carolina Pérez-Segura
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Jodi A Hadden-Perilla
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - James P Reilly
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Bogdan Dragnea
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| |
Collapse
|
23
|
Varvelo L, Lynd JK, Bennett DIG. Formally exact simulations of mesoscale exciton dynamics in molecular materials. Chem Sci 2021; 12:9704-9711. [PMID: 34349941 PMCID: PMC8293828 DOI: 10.1039/d1sc01448j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 05/31/2021] [Indexed: 02/04/2023] Open
Abstract
Excited state carriers, such as excitons, can diffuse on the 100 nm to micron length scale in molecular materials but only delocalize over short length scales due to coupling between electronic and vibrational degrees-of-freedom. Here, we leverage the locality of excitons to adaptively solve the hierarchy of pure states equations (HOPS). We demonstrate that our adaptive HOPS (adHOPS) methodology provides a formally exact and size-invariant (i.e., ) scaling algorithm for simulating mesoscale quantum dynamics. Finally, we provide proof-of-principle calculations for exciton diffusion on linear chains containing up to 1000 molecules. The adaptive hierarchy of pure states (adHOPS) algorithm leverages the locality of excitons in molecular materials to perform formally-exact simulations with size-invariant (i.e., ) scaling, enabling efficient simulations of mesoscale exciton dynamics.![]()
Collapse
Affiliation(s)
- Leonel Varvelo
- Department of Chemistry, Southern Methodist University PO Box 750314 Dallas TX USA
| | - Jacob K Lynd
- Department of Chemistry, Southern Methodist University PO Box 750314 Dallas TX USA
| | - Doran I G Bennett
- Department of Chemistry, Southern Methodist University PO Box 750314 Dallas TX USA
| |
Collapse
|
24
|
Zheng F, Chen L, Gao J, Zhao Y. Fully Quantum Modeling of Exciton Diffusion in Mesoscale Light Harvesting Systems. MATERIALS (BASEL, SWITZERLAND) 2021; 14:3291. [PMID: 34198704 PMCID: PMC8232211 DOI: 10.3390/ma14123291] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 06/06/2021] [Accepted: 06/08/2021] [Indexed: 11/16/2022]
Abstract
It has long been a challenge to accurately and efficiently simulate exciton-phonon dynamics in mesoscale photosynthetic systems with a fully quantum mechanical treatment due to extensive computational resources required. In this work, we tackle this seemingly intractable problem by combining the Dirac-Frenkel time-dependent variational method with Davydov trial states and implementing the algorithm in graphic processing units. The phonons are treated on the same footing as the exciton. Tested with toy models, which are nanoarrays of the B850 pigments from the light harvesting 2 complexes of purple bacteria, the methodology is adopted to describe exciton diffusion in huge systems containing more than 1600 molecules. The superradiance enhancement factor extracted from the simulations indicates an exciton delocalization over two to three pigments, in agreement with measurements of fluorescence quantum yield and lifetime in B850 systems. With fractal analysis of the exciton dynamics, it is found that exciton transfer in B850 nanoarrays exhibits a superdiffusion component for about 500 fs. Treating the B850 ring as an aggregate and modeling the inter-ring exciton transfer as incoherent hopping, we also apply the method of classical master equations to estimate exciton diffusion properties in one-dimensional (1D) and two-dimensional (2D) B850 nanoarrays using derived analytical expressions of time-dependent excitation probabilities. For both coherent and incoherent propagation, faster energy transfer is uncovered in 2D nanoarrays than 1D chains, owing to availability of more numerous propagating channels in the 2D arrangement.
Collapse
Affiliation(s)
- Fulu Zheng
- Bremen Center for Computational Materials Science, University of Bremen, 28359 Bremen, Germany;
| | - Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str., 38, 01187 Dresden, Germany;
| | - Jianbo Gao
- Center for Geodata and Analysis, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China;
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Yang Zhao
- School of Materials Science and Engineering, Nanyang Technological University, Singapore 639798, Singapore
| |
Collapse
|
25
|
Nematiaram T, Padula D, Troisi A. Bright Frenkel Excitons in Molecular Crystals: A Survey. CHEMISTRY OF MATERIALS : A PUBLICATION OF THE AMERICAN CHEMICAL SOCIETY 2021; 33:3368-3378. [PMID: 34526736 PMCID: PMC8432684 DOI: 10.1021/acs.chemmater.1c00645] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 04/14/2021] [Indexed: 05/12/2023]
Abstract
We computed the optical properties of a large set of molecular crystals (∼2200 structures) composed of molecules whose lowest excited states are strongly coupled and generate wide excitonic bands. Such bands are classified in terms of their dimensionality (1-, 2-, and 3-dimensional), the position of the optically allowed state in relation with the excitonic density of states, and the presence of Davydov splitting. The survey confirms that one-dimensional aggregates are rare in molecular crystals highlighting the need to go beyond the simple low-dimensional models. Furthermore, this large set of data is used to search for technologically interesting and less common properties. For instance, we considered the largest excitonic bandwidth that is achievable within known molecular crystals and identified materials with strong super-radiant states. Finally, we explored the possibility that strong excitonic coupling can be used to generate emissive states in the near-infrared region in materials formed by molecules with bright visible absorption and we could identify the maximum allowable red shift in this material class. These insights with the associated searchable database provide practical guidelines for designing materials with interesting optical properties.
Collapse
Affiliation(s)
- Tahereh Nematiaram
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Daniele Padula
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, via A. Moro 2, Siena 53100, Italy
| | - Alessandro Troisi
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| |
Collapse
|
26
|
Malina T, Koehorst R, Bína D, Pšenčík J, van Amerongen H. Superradiance of bacteriochlorophyll c aggregates in chlorosomes of green photosynthetic bacteria. Sci Rep 2021; 11:8354. [PMID: 33863954 PMCID: PMC8052352 DOI: 10.1038/s41598-021-87664-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 04/01/2021] [Indexed: 01/18/2023] Open
Abstract
Chlorosomes are the main light-harvesting complexes of green photosynthetic bacteria that are adapted to a phototrophic life at low-light conditions. They contain a large number of bacteriochlorophyll c, d, or e molecules organized in self-assembling aggregates. Tight packing of the pigments results in strong excitonic interactions between the monomers, which leads to a redshift of the absorption spectra and excitation delocalization. Due to the large amount of disorder present in chlorosomes, the extent of delocalization is limited and further decreases in time after excitation. In this work we address the question whether the excitonic interactions between the bacteriochlorophyll c molecules are strong enough to maintain some extent of delocalization even after exciton relaxation. That would manifest itself by collective spontaneous emission, so-called superradiance. We show that despite a very low fluorescence quantum yield and short excited state lifetime, both caused by the aggregation, chlorosomes indeed exhibit superradiance. The emission occurs from states delocalized over at least two molecules. In other words, the dipole strength of the emissive states is larger than for a bacteriochlorophyll c monomer. This represents an important functional mechanism increasing the probability of excitation energy transfer that is vital at low-light conditions. Similar behaviour was observed also in one type of artificial aggregates, and this may be beneficial for their potential use in artificial photosynthesis.
Collapse
Affiliation(s)
- Tomáš Malina
- Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic
| | - Rob Koehorst
- Laboratory of Biophysics, Wageningen University, Wageningen, The Netherlands.,MicroSpectroscopy Research Facility, Wageningen University, Wageningen, The Netherlands
| | - David Bína
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic.,Biology Centre, Czech Academy of Science, České Budějovice, Czech Republic
| | - Jakub Pšenčík
- Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic.
| | - Herbert van Amerongen
- Laboratory of Biophysics, Wageningen University, Wageningen, The Netherlands.,MicroSpectroscopy Research Facility, Wageningen University, Wageningen, The Netherlands
| |
Collapse
|
27
|
Wei YC, Shen SW, Wu CH, Ho SY, Zhang Z, Wu CI, Chou PT. Through-Space Exciton Delocalization in Segregated HJ-Crystalline Molecular Aggregates. J Phys Chem A 2021; 125:943-953. [DOI: 10.1021/acs.jpca.0c09075] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yu-Chen Wei
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Shin-Wei Shen
- Graduate Institute of Photonics and Optoelectronics, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Cheng-Ham Wu
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Ssu-Yu Ho
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Zhiyun Zhang
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - Chih-I Wu
- Graduate Institute of Photonics and Optoelectronics, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Pi-Tai Chou
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| |
Collapse
|
28
|
Biaggne A, Knowlton WB, Yurke B, Lee J, Li L. Substituent Effects on the Solubility and Electronic Properties of the Cyanine Dye Cy5: Density Functional and Time-Dependent Density Functional Theory Calculations. Molecules 2021; 26:molecules26030524. [PMID: 33498306 PMCID: PMC7863957 DOI: 10.3390/molecules26030524] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 01/11/2021] [Accepted: 01/15/2021] [Indexed: 02/07/2023] Open
Abstract
The aggregation ability and exciton dynamics of dyes are largely affected by properties of the dye monomers. To facilitate aggregation and improve excitonic function, dyes can be engineered with substituents to exhibit optimal key properties, such as hydrophobicity, static dipole moment differences, and transition dipole moments. To determine how electron donating (D) and electron withdrawing (W) substituents impact the solvation, static dipole moments, and transition dipole moments of the pentamethine indocyanine dye Cy5, density functional theory (DFT) and time-dependent (TD-) DFT calculations were performed. The inclusion of substituents had large effects on the solvation energy of Cy5, with pairs of withdrawing substituents (W-W pairs) exhibiting the most negative solvation energies, suggesting dyes with W-W pairs are more soluble than others. With respect to pristine Cy5, the transition dipole moment was relatively unaffected upon substitution while numerous W-W pairs and pairs of donating and withdrawing substituents (D-W pairs) enhanced the static dipole difference. The increase in static dipole difference was correlated with an increase in the magnitude of the sum of the Hammett constants of the substituents on the dye. The results of this study provide insight into how specific substituents affect Cy5 monomers and which pairs can be used to engineer dyes with desired properties.
Collapse
Affiliation(s)
- Austin Biaggne
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (W.B.K.); (B.Y.); (J.L.)
| | - William B. Knowlton
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (W.B.K.); (B.Y.); (J.L.)
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA
| | - Bernard Yurke
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (W.B.K.); (B.Y.); (J.L.)
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA
| | - Jeunghoon Lee
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (W.B.K.); (B.Y.); (J.L.)
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID 83725, USA
| | - Lan Li
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (W.B.K.); (B.Y.); (J.L.)
- Center for Advanced Energy Studies, Idaho Falls, ID 83401, USA
- Correspondence:
| |
Collapse
|
29
|
Sardjan AS, Westerman FP, Ogilvie JP, Jansen TLC. Observation of Ultrafast Coherence Transfer and Degenerate States with Polarization-Controlled Two-Dimensional Electronic Spectroscopy. J Phys Chem B 2020; 124:9420-9427. [PMID: 32990439 PMCID: PMC7586392 DOI: 10.1021/acs.jpcb.0c08126] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
![]()
Optical
spectroscopy is a powerful tool to interrogate quantum
states of matter. We present simulation results for the cross-polarized
two-dimensional electronic spectra of the light-harvesting system
LH2 of purple bacteria. We identify a spectral feature on the diagonal,
which we assign to ultrafast coherence transfer between degenerate
states. The implication for the interpretation of previous experiments
on different systems and the potential use of this feature are discussed.
In particular, we foresee that this kind of feature will be useful
for identifying mixed degenerate states and for identifying the origin
of symmetry breaking disorder in systems like LH2. Furthermore, this
may help identify both vibrational and electronic states in biological
systems such as proteins and solid-state materials such as hybrid
perovskites.
Collapse
Affiliation(s)
- Andy S Sardjan
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Floris P Westerman
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Jennifer P Ogilvie
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Thomas L C Jansen
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| |
Collapse
|
30
|
Kundu S, Makri N. Real-Time Path Integral Simulation of Exciton-Vibration Dynamics in Light-Harvesting Bacteriochlorophyll Aggregates. J Phys Chem Lett 2020; 11:8783-8789. [PMID: 33001649 DOI: 10.1021/acs.jpclett.0c02760] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The mechanism of excitation energy transfer in photoexcited bacteriochlorophyll (BChl) aggregates poses intriguing questions, which have important implications for the observed efficiency of photosynthesis. We investigate this process through fully quantum mechanical calculations of exciton-vibration dynamics in chains and rings of BChl a molecules, with parameters characterizing the B850 ring of the LH2 complex of photosynthetic bacteria. The calculations are performed using the modular path integral methodology, which allows the exact treatment of 50 intramolecular vibrations on each pigment using parameters obtained from spectroscopic Huang-Rhys factors with computational effort that scales linearly with aggregate length. Our results indicate that the interplay between electronic and vibrational time scales leads to the rapid suppression but not the overdamping of electronic coherence, which facilitates the spreading of excitation energy throughout the aggregate.
Collapse
Affiliation(s)
- Sohang Kundu
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States
- Department of Physics, University of Illinois, Urbana, Illinois 61801, United States
| |
Collapse
|
31
|
Mattiotti F, Kuno M, Borgonovi F, Jankó B, Celardo GL. Thermal Decoherence of Superradiance in Lead Halide Perovskite Nanocrystal Superlattices. NANO LETTERS 2020; 20:7382-7388. [PMID: 32969667 DOI: 10.1021/acs.nanolett.0c02784] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Recent experiments by Rainò et al. ( Nature 2018, 563, 671-675) have documented cooperative emission from CsPbBr3 nanocrystal superlattices, exhibiting the hallmarks of low-temperature superradiance. In particular, the optical response is coherent and the radiative decay rate is increased by a factor of 3, relative to that of individual nanocrystals. However, the increase is 6 orders of magnitude smaller than what is theoretically expected from the superradiance of large assemblies, consisting of 106-108 interacting nanocrystals. Here, we develop a theoretical model of superradiance for such systems and show that thermal decoherence is largely responsible for the drastic reduction of the radiative decay rate in nanocrystal superlattices. Our theoretical approach explains the experimental results ( Nature 2018, 563, 671-675), provides insight into the design of small nanocrystal superlattices, and shows a 4 orders of magnitude enhancement in superradiant response. These quantitative predictions pave the path toward observing superradiance at higher temperatures.
Collapse
Affiliation(s)
- Francesco Mattiotti
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, United States
- Dipartimento di Matematica e Fisica and Interdisciplinary Laboratories for Advanced Materials Physics, Università Cattolica del Sacro Cuore, Brescia 25121, Italy
- Istituto Nazionale di Fisica Nucleare, Sezione di Pavia, Pavia 27100, Italy
| | - Masaru Kuno
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, United States
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Fausto Borgonovi
- Dipartimento di Matematica e Fisica and Interdisciplinary Laboratories for Advanced Materials Physics, Università Cattolica del Sacro Cuore, Brescia 25121, Italy
- Istituto Nazionale di Fisica Nucleare, Sezione di Pavia, Pavia 27100, Italy
| | - Boldizsár Jankó
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - G Luca Celardo
- Instituto de Física, Benemérita Universidad Autónoma de Puebla, Puebla 72570, Mexico
| |
Collapse
|
32
|
Nariyangadu SB, Choedak T, Malar EJP, Chen J, Thyrhaug E, Kumar P, Zhou J, Yechuri V, Pal SK, Lidin S, Thangadhorai KN, Karki KJ, Pullerits T. New Nonlinear Optical Crystal of Rhodamine 590 Acid Phthalate. ACS OMEGA 2020; 5:20863-20873. [PMID: 32875221 PMCID: PMC7450614 DOI: 10.1021/acsomega.0c02303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Accepted: 07/29/2020] [Indexed: 06/11/2023]
Abstract
The synthesis and crystal structure of rhodamine 590 acid phthalate (RhAP) have been reported. This novel solid-state rhodamine derivative not only has a longer fluorescence lifetime compared to rhodamine solid-state matrixes where emission is quenched but also possesses strong nonlinear optical characteristics. The static and dynamic first- and second-order hyperpolarizabilities were calculated using the time-dependent density functional theory at the B3LYP/6-31+G* level. The computed static values of β and γ of RhAP by the X-ray diffraction (XRD) structure were 31.9 × 10-30 and 199.0 × 10-36 esu, respectively. These values were about 62 times larger than the corresponding values in urea, an already well-known nonlinear optical material. The second-order hyperpolarizability of the compound was determined experimentally by measuring the two-photon absorption cross section using intensity-modulated light fields. The reported compound, excitable at near-infrared, exhibited frequency upconversion with the two-photon absorption coefficient enhanced by two orders of magnitude compared to that of the dye solution. Hosting the dye in the solid, at high concentrations, exploits the nonlinearity of the dye itself as well as results in significant excitonic effects including formation of broad exciton band and superradiance.
Collapse
Affiliation(s)
- Sesha Bamini Nariyangadu
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
- National
Centre for Ultrafast Processes, University
of Madras, Chennai 600113, India
| | - Tenzin Choedak
- National
Centre for Ultrafast Processes, University
of Madras, Chennai 600113, India
| | | | - Junsheng Chen
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
- Nano-Science
Center & Department of Chemistry, University
of Copenhagen, 1165 København, Denmark
| | - Erling Thyrhaug
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
| | - Pushpendra Kumar
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
- School
of Basic Sciences, Indian Institute of Technology, Mandi 175005, India
| | - Jinming Zhou
- Department
of Production and Materials Engineering, Lund University, 22100 Lund, Sweden
| | | | - Suman Kalyan Pal
- School
of Basic Sciences, Indian Institute of Technology, Mandi 175005, India
| | - Sven Lidin
- Division
of Polymer and Materials Chemistry, Lund
University, 22100 Lund, Sweden
| | | | - Khadga J. Karki
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
| | - Tönu Pullerits
- Chemical
Physics and NanoLund, Lund University, P.O. Box 124, 22100 Lund, Sweden
| |
Collapse
|
33
|
Kondo T, Mutoh R, Tabe H, Kurisu G, Oh-Oka H, Fujiyoshi S, Matsushita M. Cryogenic Single-Molecule Spectroscopy of the Primary Electron Acceptor in the Photosynthetic Reaction Center. J Phys Chem Lett 2020; 11:3980-3986. [PMID: 32352789 DOI: 10.1021/acs.jpclett.0c00891] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The photosynthetic reaction center (RC) converts light energy into electrochemical energy. The RC of heliobacteria (hRC) is a primitive homodimeric RC containing 58 bacteriochlorophylls and 2 chlorophyll as. The chlorophyll serves as the primary electron acceptor (Chl a-A0) responsible for light harvesting and charge separation. The single-molecule spectroscopy of Chl a-A0 can be used to investigate heterogeneities of the RC photochemical function, though the low fluorescence quantum yield (0.1%) makes it difficult. Here, we show the fluorescence excitation spectroscopy of individual Chl a-A0s in single hRCs at 6 K. The fluorescence quantum yield and absorption cross section of Chl a-A0 increase 2- and 4-fold, respectively, compared to those at room temperature. The two Chl a-A0s in single hRCs are identified as two distinct peaks in the fluorescence excitation spectrum, exhibiting different excitation polarization dependences. The spectral changes caused by photobleaching indicate the energy transfer across subunits in the hRC.
Collapse
Affiliation(s)
- Toru Kondo
- Department of Physics, Graduate School of Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo 152-8551, Japan
| | - Risa Mutoh
- Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
| | - Hiroaki Tabe
- Department of Physics, Graduate School of Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo 152-8551, Japan
| | - Genji Kurisu
- Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
| | - Hirozo Oh-Oka
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Satoru Fujiyoshi
- Department of Physics, Graduate School of Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo 152-8551, Japan
| | - Michio Matsushita
- Department of Physics, Graduate School of Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo 152-8551, Japan
| |
Collapse
|
34
|
Cao J, Cogdell RJ, Coker DF, Duan HG, Hauer J, Kleinekathöfer U, Jansen TLC, Mančal T, Miller RJD, Ogilvie JP, Prokhorenko VI, Renger T, Tan HS, Tempelaar R, Thorwart M, Thyrhaug E, Westenhoff S, Zigmantas D. Quantum biology revisited. SCIENCE ADVANCES 2020; 6:eaaz4888. [PMID: 32284982 PMCID: PMC7124948 DOI: 10.1126/sciadv.aaz4888] [Citation(s) in RCA: 184] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/06/2020] [Indexed: 05/21/2023]
Abstract
Photosynthesis is a highly optimized process from which valuable lessons can be learned about the operating principles in nature. Its primary steps involve energy transport operating near theoretical quantum limits in efficiency. Recently, extensive research was motivated by the hypothesis that nature used quantum coherences to direct energy transfer. This body of work, a cornerstone for the field of quantum biology, rests on the interpretation of small-amplitude oscillations in two-dimensional electronic spectra of photosynthetic complexes. This Review discusses recent work reexamining these claims and demonstrates that interexciton coherences are too short lived to have any functional significance in photosynthetic energy transfer. Instead, the observed long-lived coherences originate from impulsively excited vibrations, generally observed in femtosecond spectroscopy. These efforts, collectively, lead to a more detailed understanding of the quantum aspects of dissipation. Nature, rather than trying to avoid dissipation, exploits it via engineering of exciton-bath interaction to create efficient energy flow.
Collapse
Affiliation(s)
- Jianshu Cao
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
| | - Richard J. Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Science, University of Glasgow, Glasgow G12 8QQ, UK
| | - David F. Coker
- Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, USA
| | - Hong-Guang Duan
- Atomically Resolved Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany
- I. Institut für Theoretische Physik, Universität Hamburg, Jungiusstrasse 9, 20355 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, 22761 Hamburg, Germany
| | - Jürgen Hauer
- Technische Universität München, Dynamische Spektroskopien, Fakultät für Chemie, Lichtenbergstr. 4, 85748 Garching, Germany, and Photonics Institute, TU Wien, 1040 Vienna, Austria
| | - Ulrich Kleinekathöfer
- Department of Physics and Earth Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
| | - Thomas L. C. Jansen
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands
| | - Tomáš Mančal
- Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, CZ-12116 Prague 2, Czech Republic
| | - R. J. Dwayne Miller
- Atomically Resolved Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, 22761 Hamburg, Germany
- Departments of Chemistry and Physics, University of Toronto, Toronto, ON M5S 3H6, Canada
| | | | - Valentyn I. Prokhorenko
- Atomically Resolved Dynamics Department, Max Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany
| | - Thomas Renger
- Institute of Theoretical Physics, Department of Theoretical Biophysics, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria
| | - Howe-Siang Tan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Roel Tempelaar
- Department of Chemistry, Columbia University, 3000 Broadway, New York, NY 10027, USA
| | - Michael Thorwart
- I. Institut für Theoretische Physik, Universität Hamburg, Jungiusstrasse 9, 20355 Hamburg, Germany
- The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, 22761 Hamburg, Germany
| | - Erling Thyrhaug
- Technische Universität München, Dynamische Spektroskopien, Fakultät für Chemie, Lichtenbergstr. 4, 85748 Garching, Germany, and Photonics Institute, TU Wien, 1040 Vienna, Austria
| | - Sebastian Westenhoff
- Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg 40530, Sweden
| | | |
Collapse
|
35
|
|
36
|
Tong AL, Fiebig OC, Nairat M, Harris D, Giansily M, Chenu A, Sturgis JN, Schlau-Cohen GS. Comparison of the Energy-Transfer Rates in Structural and Spectral Variants of the B800-850 Complex from Purple Bacteria. J Phys Chem B 2020; 124:1460-1469. [PMID: 31971387 DOI: 10.1021/acs.jpcb.9b11899] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Photosynthetic light harvesting can occur with a remarkable near-unity quantum efficiency. The B800-850 complex, also known as light-harvesting complex 2 (LH2), is the primary light-harvesting complex in purple bacteria and has been extensively studied as a model system. The bacteriochlorophylls of the B800-850 complex are organized into two concentric rings, known as the B800 and B850 rings. However, depending on the species and growth conditions, the number of constituent subunits, the pigment geometry, and the absorption energies vary. While the dynamics of some B800-850 variants have been exhaustively characterized, others have not been measured. Furthermore, a direct and simultaneous comparison of how both structural and spectral differences between variants affect these dynamics has not been performed. In this work, we utilize ultrafast transient absorption measurements to compare the B800 to B850 energy-transfer rates in the B800-850 complex as a function of the number of subunits, geometry, and absorption energies. The nonameric B800-850 complex from Rhodobacter (Rb.) sphaeroides is 40% faster than the octameric B800-850 complex from Rhodospirillum (Rs.) molischianum, consistent with structure-based predictions. In contrast, the blue-shifted B800-820 complex from Rs. molischianum is only 20% faster than the B800-850 complex from Rs. molischianum despite an increase in the spectral overlap between the rings that would be expected to produce a larger increase in the energy-transfer rate. These measurements support current models that contain dark, higher-lying excitonic states to bridge the energy gap between rings, thereby maintaining similar energy-transfer dynamics. Overall, these results demonstrate that energy-transfer dynamics in the B800-850 complex are robust to the spectral and structural variations between species used to optimize energy capture and flow in purple bacteria.
Collapse
Affiliation(s)
- Ashley L Tong
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Olivia C Fiebig
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Muath Nairat
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Dvir Harris
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Marcel Giansily
- LISM UMR 7255 , CNRS and Aix-Marseille University , 31 Chemin Joseph Aiguier , Marseille Cedex 9 13402 , France
| | - Aurélia Chenu
- Donostia International Physics Center , E-20018 San Sebastián , Spain.,Ikerbasque, Basque Foundation for Science , E-48013 Bilbao , Spain
| | - James N Sturgis
- LISM UMR 7255 , CNRS and Aix-Marseille University , 31 Chemin Joseph Aiguier , Marseille Cedex 9 13402 , France
| | - Gabriela S Schlau-Cohen
- Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| |
Collapse
|
37
|
Kühn O, Mančal T, Pullerits T. Interpreting Fluorescence Detected Two-Dimensional Electronic Spectroscopy. J Phys Chem Lett 2020; 11:838-842. [PMID: 32024369 DOI: 10.1021/acs.jpclett.9b03851] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Affiliation(s)
- Oliver Kühn
- Institute of Physics , University of Rostock , Albert Einstein Strasse 23-24 , 18059 Rostock , Germany
| | - Tomáš Mančal
- Faculty of Mathematics and Physics , Charles University in Prague , Ke Karlovu 5 , CZ-121 16 Prague 2, Czech Republic
| | - Tõnu Pullerits
- Department of Chemical Physics and NanoLund , Lund University , P.O. Box 124, 22100 Lund , Sweden
| |
Collapse
|
38
|
Triplet state quenching of bacteriochlorophyll c aggregates in a protein-free environment of a chlorosome interior. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110542] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
39
|
Abstract
Exciton states of molecular aggregates, with a particular focus on delocalization length, are discussed. Despite the huge number of studies of molecular excitons, it is argued that there remain interesting open questions. It is hypothesized that limits for equilibrium delocalization length are generally in the range of tens of molecules, even at very low temperatures. Effects that limit delocalization include: phase disorder from wave-zone electronic coupling, polarization fluctuations, and the extreme sensitivity of perfect delocalization to disorder as the size of the molecular aggregate increases. To gain physical insight, the inverse participation ratio is compared to the order parameter for a classical system of coupled, and hence entrained, oscillators-the Kuramoto model. The main result of the paper is that the inverse participation ratio obtained from the quantum mechanical exciton model and the Kuramoto order parameter obtained from coupled classical oscillators estimate the same coherence length. Conclusions suggest discussion topics that touch on limits of delocalization, quantum-to-classical transitions in molecular exciton systems, and whether excitons are good prospects for exploring and exploiting quantum information resources from coherence.
Collapse
Affiliation(s)
- Gregory D Scholes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.
| |
Collapse
|
40
|
Bourne Worster S, Stross C, Vaughan FMWC, Linden N, Manby FR. Structure and Efficiency in Bacterial Photosynthetic Light Harvesting. J Phys Chem Lett 2019; 10:7383-7390. [PMID: 31714789 DOI: 10.1021/acs.jpclett.9b02625] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Photosynthetic organisms use networks of chromophores to absorb and deliver solar energy to reaction centers. We present a detailed model of the light-harvesting complexes in purple bacteria, including explicit interaction with sunlight, radiative and nonradiative energy loss, and dephasing and thermalizing effects of coupling to a vibrational bath. We capture the effect of slow vibrations by introducing time-dependent disorder. Our model describes the experimentally observed high efficiency of light harvesting, despite the absence of long-range quantum coherence. The one-exciton part of the quantum state fluctuates continuously but remains highly mixed at all times. These results suggest a relatively minor role for structure in determining efficiency. We build hypothetical models with randomly arranged chromophores but still observe high efficiency when nearest-neighbor distances are comparable to those in nature. This helps explain the high transport efficiency in organisms with widely differing antenna structures and suggests new design criteria for artificial light-harvesting devices.
Collapse
Affiliation(s)
- Susannah Bourne Worster
- Centre for Computational Chemistry, School of Chemistry , University of Bristol , Bristol BS8 1TS , U.K
| | - Clement Stross
- Centre for Computational Chemistry, School of Chemistry , University of Bristol , Bristol BS8 1TS , U.K
- School of Mathematics , University of Bristol , Bristol BS8 1UG , U.K
| | - Felix M W C Vaughan
- Centre for Computational Chemistry, School of Chemistry , University of Bristol , Bristol BS8 1TS , U.K
- School of Mathematics , University of Bristol , Bristol BS8 1UG , U.K
- Bristol Centre for Complexity Sciences , University of Bristol , Bristol BS2 8BB , U.K
| | - Noah Linden
- School of Mathematics , University of Bristol , Bristol BS8 1UG , U.K
| | - Frederick R Manby
- Centre for Computational Chemistry, School of Chemistry , University of Bristol , Bristol BS8 1TS , U.K
| |
Collapse
|
41
|
Tuning the Photophysical Features of Self-Assembling Photoactive Polypeptides for Light-Harvesting. MATERIALS 2019; 12:ma12213554. [PMID: 31671513 PMCID: PMC6862114 DOI: 10.3390/ma12213554] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 10/25/2019] [Accepted: 10/27/2019] [Indexed: 01/03/2023]
Abstract
The LH1 complex is the major light-harvesting antenna of purple photosynthetic bacteria. Its role is to capture photons, and then store them and transfer the excitation energy to the photosynthetic reaction center. The structure of LH1 is modular and it cooperatively self-assembles from the subunits composed of short transmembrane polypeptides that reversibly bind the photoactive cofactors: bacteriochlorophyll and carotenoid. LH1 assembly, the intra-complex interactions and the light-harvesting features of LH1 can be controlled in micellar media by varying the surfactant concentration and by adding carotenoid and/or a co-solvent. By exploiting this approach, we can manipulate the size of the assembly, the intensity of light absorption, and the energy and lifetime of its first excited singlet state. For instance, via the introduction of Ni-substituted bacteriochlorophyll into LH1, the lifetime of this electronic state of the antenna can be shortened by almost three orders of magnitude. On the other hand, via the exchange of carotenoid, light absorption in the visible range can be tuned. These results show how in a relatively simple self-assembling pigment-polypeptide system a sophisticated functional tuning can be achieved and thus they provide guidelines for the construction of bio-inspired photoactive nanodevices.
Collapse
|
42
|
Tsvetkova IB, Anil Sushma A, Wang JCY, Schaich WL, Dragnea B. Radiation Brightening from Virus-like Particles. ACS NANO 2019; 13:11401-11408. [PMID: 31335115 DOI: 10.1021/acsnano.9b04786] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Concentration quenching is a well-known challenge in many fluorescence imaging applications. Here, we show that the optical emission from hundreds of chromophores confined onto the surface of a 28 nm diameter virus particle can be recovered under pulsed irradiation. We have found that as one increases the number of chromophores tightly bound to the virus surface, fluorescence quenching ensues at first, but when the number of chromophores per particle is nearing the maximum number of surface sites allowable, a sudden brightening of the emitted light and a shortening of the excited-state lifetime are observed. This radiation brightening occurs only under short pulse excitation; steady-state excitation is characterized by conventional concentration quenching for any number of chromophores per particle. The observed suppression of fluorescence quenching is consistent with efficient, collective relaxation at room temperature. Interestingly, radiation brightening disappears when the emitters' spatial and/or dynamic heterogeneity is increased, suggesting that the template structural properties may play a role that could be instrumental in developing virus-enabled imaging vectors that have optical properties qualitatively different than those of state-of-the-art biophotonic agents.
Collapse
|
43
|
Luo Y, Chen G, Zhang Y, Zhang L, Yu Y, Kong F, Tian X, Zhang Y, Shan C, Luo Y, Yang J, Sandoghdar V, Dong Z, Hou JG. Electrically Driven Single-Photon Superradiance from Molecular Chains in a Plasmonic Nanocavity. PHYSICAL REVIEW LETTERS 2019; 122:233901. [PMID: 31298910 DOI: 10.1103/physrevlett.122.233901] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Indexed: 05/21/2023]
Abstract
We demonstrate single-photon superradiance from artificially constructed nonbonded zinc-phthalocyanine molecular chains of up to 12 molecules. We excite the system via electron tunneling in a plasmonic nanocavity and quantitatively investigate the interaction of the localized plasmon with single-exciton superradiant states resulting from dipole-dipole coupling. Dumbbell-like patterns obtained by subnanometer resolved spectroscopic imaging disclose the coherent nature of the coupling associated with superradiant states while second-order photon correlation measurements demonstrate single-photon emission. The combination of spatially resolved spectral measurements with theoretical considerations reveals that nanocavity plasmons dramatically modify the linewidth and intensity of emission from the molecular chains, but they do not dictate the intrinsic coherence of the superradiant states. Our studies shed light on the optical properties of molecular collective states and their interaction with nanoscopically localized plasmons.
Collapse
Affiliation(s)
- Yang Luo
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Gong Chen
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
- School of Physics and Engineering, Zhengzhou University, Zhengzhou 450052, China
| | - Yang Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Li Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yunjie Yu
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Fanfang Kong
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xiaojun Tian
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yao Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Chongxin Shan
- School of Physics and Engineering, Zhengzhou University, Zhengzhou 450052, China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Jinlong Yang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of Light, Erlangen 91058, Germany
| | - Zhenchao Dong
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - J G Hou
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information & Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| |
Collapse
|
44
|
Wamhoff EC, Banal JL, Bricker WP, Shepherd TR, Parsons MF, Veneziano R, Stone MB, Jun H, Wang X, Bathe M. Programming Structured DNA Assemblies to Probe Biophysical Processes. Annu Rev Biophys 2019; 48:395-419. [PMID: 31084582 PMCID: PMC7035826 DOI: 10.1146/annurev-biophys-052118-115259] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Structural DNA nanotechnology is beginning to emerge as a widely accessible research tool to mechanistically study diverse biophysical processes. Enabled by scaffolded DNA origami in which a long single strand of DNA is weaved throughout an entire target nucleic acid assembly to ensure its proper folding, assemblies of nearly any geometric shape can now be programmed in a fully automatic manner to interface with biology on the 1-100-nm scale. Here, we review the major design and synthesis principles that have enabled the fabrication of a specific subclass of scaffolded DNA origami objects called wireframe assemblies. These objects offer unprecedented control over the nanoscale organization of biomolecules, including biomolecular copy numbers, presentation on convex or concave geometries, and internal versus external functionalization, in addition to stability in physiological buffer. To highlight the power and versatility of this synthetic structural biology approach to probing molecular and cellular biophysics, we feature its application to three leading areas of investigation: light harvesting and nanoscale energy transport, RNA structural biology, and immune receptor signaling, with an outlook toward unique mechanistic insight that may be gained in these areas in the coming decade.
Collapse
Affiliation(s)
- Eike-Christian Wamhoff
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - James L Banal
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - William P Bricker
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Tyson R Shepherd
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Molly F Parsons
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Rémi Veneziano
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Matthew B Stone
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Hyungmin Jun
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Xiao Wang
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| | - Mark Bathe
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA;
| |
Collapse
|
45
|
Photosynthetic apparatus of Rhodobacter sphaeroides exhibits prolonged charge storage. Nat Commun 2019; 10:902. [PMID: 30796237 PMCID: PMC6385238 DOI: 10.1038/s41467-019-08817-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 01/25/2019] [Indexed: 12/17/2022] Open
Abstract
Photosynthetic proteins have been extensively researched for solar energy harvesting. Though the light-harvesting and charge-separation functions of these proteins have been studied in depth, their potential as charge storage systems has not been investigated to the best of our knowledge. Here, we report prolonged storage of electrical charge in multilayers of photoproteins isolated from Rhodobacter sphaeroides. Direct evidence for charge build-up within protein multilayers upon photoexcitation and external injection is obtained by Kelvin-probe and scanning-capacitance microscopies. Use of these proteins is key to realizing a 'self-charging biophotonic device' that not only harvests light and photo-generates charges but also stores them. In strong correlation with the microscopic evidence, the phenomenon of prolonged charge storage is also observed in primitive power cells constructed from the purple bacterial photoproteins. The proof-of-concept power cells generated a photovoltage as high as 0.45 V, and stored charge effectively for tens of minutes with a capacitance ranging from 0.1 to 0.2 F m-2.
Collapse
|
46
|
Massey SC, Ting PC, Yeh SH, Dahlberg PD, Sohail SH, Allodi MA, Martin EC, Kais S, Hunter CN, Engel GS. Orientational Dynamics of Transition Dipoles and Exciton Relaxation in LH2 from Ultrafast Two-Dimensional Anisotropy. J Phys Chem Lett 2019; 10:270-277. [PMID: 30599133 DOI: 10.1021/acs.jpclett.8b03223] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Light-harvesting complexes in photosynthetic organisms display fast and efficient energy transfer dynamics, which depend critically on the electronic structure of the coupled chromophores within the complexes and their interactions with their environment. We present ultrafast anisotropy dynamics, resolved in both time and frequency, of the transmembrane light-harvesting complex LH2 from Rhodobacter sphaeroides in its native membrane environment using polarization-controlled two-dimensional electronic spectroscopy. Time-dependent anisotropy obtained from both experiment and modified Redfield simulation reveals an orientational preference for excited state absorption and an ultrafast equilibration within the B850 band in LH2. This ultrafast equilibration is favorable for subsequent energy transfer toward the reaction center. Our results also show a dynamic difference in excited state absorption anisotropy between the directly excited B850 population and the population that is initially excited at 800 nm, suggesting absorption from B850 states to higher-lying excited states following energy transfer from B850*. These results give insight into the ultrafast dynamics of bacterial light harvesting and the excited state energy landscape of LH2 in the native membrane environment.
Collapse
Affiliation(s)
- Sara C Massey
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Po-Chieh Ting
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Shu-Hao Yeh
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
- Qatar Environment and Energy Research Institute , Hamad Bin Khalifa University , Qatar Foundation, Doha , Qatar
| | - Peter D Dahlberg
- Graduate Program in the Biophysical Sciences, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Sara H Sohail
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Marco A Allodi
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Elizabeth C Martin
- Department of Molecular Biology and Biotechnology , University of Sheffield , Firth Court, Western Bank, Sheffield S10 2TN , United Kingdom
| | - Sabre Kais
- Department of Chemistry , Purdue University , West Lafayette , Indiana 47907 , United States
| | - C Neil Hunter
- Department of Molecular Biology and Biotechnology , University of Sheffield , Firth Court, Western Bank, Sheffield S10 2TN , United Kingdom
| | - Gregory S Engel
- Department of Chemistry, Institute for Biophysical Dynamics, and the James Franck Institute , The University of Chicago , Chicago , Illinois 60637 , United States
| |
Collapse
|
47
|
Kunsel T, Tiwari V, Matutes YA, Gardiner AT, Cogdell RJ, Ogilvie JP, Jansen TLC. Simulating Fluorescence-Detected Two-Dimensional Electronic Spectroscopy of Multichromophoric Systems. J Phys Chem B 2019; 123:394-406. [PMID: 30543283 PMCID: PMC6345114 DOI: 10.1021/acs.jpcb.8b10176] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Indexed: 11/28/2022]
Abstract
We present a theory for modeling fluorescence-detected two-dimensional electronic spectroscopy of multichromophoric systems. The theory is tested by comparison of the predicted spectra of the light-harvesting complex LH2 with experimental data. A qualitative explanation of the strong cross-peaks as compared to conventional two-dimensional electronic spectra is given. The strong cross-peaks are attributed to the clean ground-state signal that is revealed when the annihilation of exciton pairs created on the same LH2 complex cancels oppositely signed signals from the doubly excited state. This annihilation process occurs much faster than the nonradiative relaxation. Furthermore, the line shape difference is attributed to slow dynamics, exciton delocalization within the bands, and intraband exciton-exciton annihilation. This is in line with existing theories presented for model systems. We further propose the use of time-resolved fluorescence-detected two-dimensional spectroscopy to study state-resolved exciton-exciton annihilation.
Collapse
Affiliation(s)
- Tenzin Kunsel
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Vivek Tiwari
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Yassel Acosta Matutes
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | - Richard J. Cogdell
- Institute
for Molecular Biology, University of Glasgow, Glasgow G12 8TA, U.K.
| | - Jennifer P. Ogilvie
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Thomas L. C. Jansen
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| |
Collapse
|
48
|
Pavel M, Rienk VG. Interplay of disorder and delocalization in photosynthetic light harvesting. Curr Opin Chem Biol 2018; 47:1-6. [PMID: 29957484 DOI: 10.1016/j.cbpa.2018.06.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Accepted: 06/04/2018] [Indexed: 10/28/2022]
Abstract
Photosystems, the machines of photosynthesis, are highly complex and energetically disordered pigment-protein structures. Yet, they perform their function, be it highly efficient energy transfer and charge separation or the ability to switch between light-harvesting and photoprotective states, extremely well. In this opinioned review we describe the interplay of disorder and exciton delocalization in photosynthetic light harvesting. By discussing recent research advances on grounds of well-established concepts, we demonstrate that not only is the excitation delocalization a robust phenomenon, but that it in fact enables the light-harvesting function in the disordered environment.
Collapse
Affiliation(s)
- Malý Pavel
- Faculty of Science, Vrije Universiteit Amsterdam, Netherlands; Faculty of Mathematics and Physics, Charles University, Prague, Czechia
| | | |
Collapse
|
49
|
Caycedo-Soler F, Lim J, Oviedo-Casado S, van Hulst NF, Huelga SF, Plenio MB. Theory of Excitonic Delocalization for Robust Vibronic Dynamics in LH2. J Phys Chem Lett 2018; 9:3446-3453. [PMID: 29863872 DOI: 10.1021/acs.jpclett.8b00933] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Nonlinear spectroscopy has revealed long-lasting oscillations in the optical response of a variety of photosynthetic complexes. Different theoretical models that involve the coherent coupling of electronic (excitonic) or electronic-vibrational (vibronic) degrees of freedom have been put forward to explain these observations. The ensuing debate concerning the relevance of either mechanism may have obscured their complementarity. To illustrate this balance, we quantify how the excitonic delocalization in the LH2 unit of Rhodopseudomonas acidophila purple bacterium leads to correlations of excitonic energy fluctuations, relevant coherent vibronic coupling, and importantly, a decrease in the excitonic dephasing rates. Combining these effects, we identify a feasible origin for the long-lasting oscillations observed in fluorescent traces from time-delayed two-pulse single-molecule experiments performed on this photosynthetic complex and use this approach to discuss the role of this complementarity in other photosynthetic systems.
Collapse
Affiliation(s)
- Felipe Caycedo-Soler
- Institute of Theoretical Physics and Integrated Quantum Science and Technology IQST , University of Ulm , Albert-Einstein-Allee 11 , D-89069 Ulm , Germany
| | - James Lim
- Institute of Theoretical Physics and Integrated Quantum Science and Technology IQST , University of Ulm , Albert-Einstein-Allee 11 , D-89069 Ulm , Germany
| | - Santiago Oviedo-Casado
- Departmento de Física Aplicada , Universidad Politécnica de Cartagena , 30202 Cartagena , Spain
| | - Niek F van Hulst
- ICFO - Institut de Ciencies Fotoniques , The Barcelona Institute of Science and Technology , 08860 Castelldefels, Barcelona , Spain
- ICREA - Institució Catalana de Recerca i Estudis Avançats , 08010 Barcelona , Spain
| | - Susana F Huelga
- Institute of Theoretical Physics and Integrated Quantum Science and Technology IQST , University of Ulm , Albert-Einstein-Allee 11 , D-89069 Ulm , Germany
| | - Martin B Plenio
- Institute of Theoretical Physics and Integrated Quantum Science and Technology IQST , University of Ulm , Albert-Einstein-Allee 11 , D-89069 Ulm , Germany
| |
Collapse
|
50
|
Hestand NJ, Spano FC. Expanded Theory of H- and J-Molecular Aggregates: The Effects of Vibronic Coupling and Intermolecular Charge Transfer. Chem Rev 2018; 118:7069-7163. [PMID: 29664617 DOI: 10.1021/acs.chemrev.7b00581] [Citation(s) in RCA: 727] [Impact Index Per Article: 121.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The electronic excited states of molecular aggregates and their photophysical signatures have long fascinated spectroscopists and theoreticians alike since the advent of Frenkel exciton theory almost 90 years ago. The influence of molecular packing on basic optical probes like absorption and photoluminescence was originally worked out by Kasha for aggregates dominated by Coulombic intermolecular interactions, eventually leading to the classification of J- and H-aggregates. This review outlines advances made in understanding the relationship between aggregate structure and photophysics when vibronic coupling and intermolecular charge transfer are incorporated. An assortment of packing geometries is considered from the humble molecular dimer to more exotic structures including linear and bent aggregates, two-dimensional herringbone and "HJ" aggregates, and chiral aggregates. The interplay between long-range Coulomb coupling and short-range charge-transfer-mediated coupling strongly depends on the aggregate architecture leading to a wide array of photophysical behaviors.
Collapse
Affiliation(s)
- Nicholas J Hestand
- Department of Chemistry , Temple University , Philadelphia , Pennsylvania 19122 , United States
| | - Frank C Spano
- Department of Chemistry , Temple University , Philadelphia , Pennsylvania 19122 , United States
| |
Collapse
|