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Zhu N, Qian Y, Song L, Yu Q, Sheng H, Li Y, Zhu X. Regulating Leaf Photosynthesis and Soil Microorganisms through Controlled-Release Nitrogen Fertilizer Can Effectively Alleviate the Stress of Elevated Ambient Ozone on Winter Wheat. Int J Mol Sci 2024; 25:9381. [PMID: 39273328 PMCID: PMC11394819 DOI: 10.3390/ijms25179381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Revised: 08/27/2024] [Accepted: 08/28/2024] [Indexed: 09/15/2024] Open
Abstract
The mitigation mechanisms of a kind of controlled-release nitrogen fertilizer (sulfur-coated controlled-release nitrogen fertilizer, SCNF) in response to O3 stress on a winter wheat (Triticum aestivum L.) variety (Nongmai-88) were studied in crop physiology and soil biology through the ozone-free-air controlled enrichment (O3-FACE) simulation platform and soil microbial metagenomics. The results showed that SCNF could not delay the O3-induced leaf senescence of winter wheat but could enhance the leaf size and photosynthetic function of flag leaves, increase the accumulation of nutrient elements, and lay the foundation for yield by regulating the release rate of nitrogen (N). By regulating the soil environment, SCNF could maintain the diversity and stability of soil bacterial and archaeal communities, but there was no obvious interaction with the soil fungal community. By alleviating the inhibition effects of O3 on N-cycling-related genes (ko00910) of soil microorganisms, SCNF improved the activities of related enzymes and might have great potential in improving soil N retention. The results demonstrated the ability of SCNF to improve leaf photosynthetic function and increase crop yield under O3-polluted conditions in the farmland ecosystem, which may become an effective nitrogen fertilizer management measure to cope with the elevated ambient O3 and achieve sustainable production.
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Affiliation(s)
- Nanyan Zhu
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225000, China
- College of JunCao Science and Ecology (College of Carbon Neutrality), Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Jiangsu Key Laboratory of Crop Genomics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology, College of Agricultural, Yangzhou University, Yangzhou 225000, China
| | - Yinsen Qian
- Jiangsu Key Laboratory of Crop Genomics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology, College of Agricultural, Yangzhou University, Yangzhou 225000, China
| | - Lingqi Song
- College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225009, China
| | - Qiaoqiao Yu
- Jiangsu Key Laboratory of Crop Genomics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology, College of Agricultural, Yangzhou University, Yangzhou 225000, China
| | - Haijun Sheng
- College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225009, China
| | - Ying Li
- Jiangsu Key Laboratory of Crop Genomics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology, College of Agricultural, Yangzhou University, Yangzhou 225000, China
- Department of Biology, Hong Kong Baptist University, Hong Kong 999077, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
| | - Xinkai Zhu
- Jiangsu Key Laboratory of Crop Genomics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology, College of Agricultural, Yangzhou University, Yangzhou 225000, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, The Ministry of Education of China, Yangzhou University, Yangzhou 225009, China
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Pausch J, Holz M, Zhu B, Cheng W. Rhizosphere priming promotes plant nitrogen acquisition by microbial necromass recycling. PLANT, CELL & ENVIRONMENT 2024; 47:1987-1996. [PMID: 38369964 DOI: 10.1111/pce.14858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 02/02/2024] [Accepted: 02/04/2024] [Indexed: 02/20/2024]
Abstract
Nitrogen availability in the rhizosphere relies on root-microorganism interactions, where root exudates trigger soil organic matter (SOM) decomposition through the rhizosphere priming effect (RPE). Though microbial necromass contribute significantly to organically bound soil nitrogen (N), the role of RPEs in regulating necromass recycling and plant nitrogen acquisition has received limited attention. We used 15N natural abundance as a proxy for necromass-N since necromass is enriched in 15N compared to other soil-N forms. We combined studies using the same experimental design for continuous 13CO2 labelling of various plant species and the same soil type, but considering top- and subsoil. RPE were quantified as difference in SOM-decomposition between planted and unplanted soils. Results showed higher plant N uptake as RPEs increased. The positive relationship between 15N-enrichment of shoots and roots and RPEs indicated an enhanced necromass-N turnover by RPE. Moreover, our data revealed that RPEs were saturated with increasing carbon (C) input via rhizodeposition in topsoil. In subsoil, RPEs increased linearly within a small range of C input indicating a strong effect of root-released C on decomposition rates in deeper soil horizons. Overall, this study confirmed the functional importance of rhizosphere C input for plant N acquisition through enhanced necromass turnover by RPEs.
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Affiliation(s)
- Johanna Pausch
- Agroecology, BayCEER, University of Bayreuth, Bayreuth, Bayern, Germany
| | - Maire Holz
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | - Biao Zhu
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Weixin Cheng
- Department of Environmental Studies, University of California, Santa Cruz, California, USA
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Zhang Y, Ren Y, Zhou S, Ning X, Wang X, Yang Y, Sun S, Vinay N, Bahn M, Han J, Liu Y, Xiong Y, Liao Y, Mo F. Spatio-temporal microbial regulation of aggregate-associated priming effects under contrasting tillage practices. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 925:171564. [PMID: 38460685 DOI: 10.1016/j.scitotenv.2024.171564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/24/2024] [Accepted: 03/05/2024] [Indexed: 03/11/2024]
Abstract
Tillage intensity significantly influences the heterogeneous distribution and dynamic changes of soil microorganisms, consequently shaping spatio-temporal patterns of SOC decomposition. However, little is known about the microbial mechanisms by which tillage intensity regulates the priming effect (PE) dynamics in heterogeneous spatial environments such as aggregates. Herein, a microcosm experiment was established by adding 13C-labeled straw residue to three distinct aggregate-size classes (i.e., mega-, macro-, and micro-aggregates) from two long-term contrasting tillage histories (no-till [NT] and conventional plow tillage [CT]) for 160 days to observe the spatio-temporal variations in PE. Metagenomic sequencing and Fourier transform mid-infrared techniques were used to assess the relative importance of C-degrading functional genes, microbial community succession, and SOC chemical composition in the aggregate-associated PE dynamics during straw decomposition. Spatially, straw addition induced a positive PE for all aggregates, with stronger PE occurring in larger aggregates, especially in CT soil compared to NT soil. Larger aggregates have more unique microbial communities enriched in genes for simple C degradation (e.g., E5.1.3.6, E2.4.1.7, pmm-pgm, and KduD in Nitrosospeera and Burkholderia), contributing to the higher short-term PE; however, CT soils harbored more genes for complex C degradation (e.g., TSTA3, fcl, pmm-pgm, and K06871 in Gammaproteobacteria and Phycicoccus), supporting a stronger long-term PE. Temporally, soil aggregates played a significant role in the early-stage PEs (i.e., < 59 days after residue addition) through co-metabolism and nitrogen (N) mining, as evidenced by the increased microbial biomass C and dissolved organic C (DOC) and reduced inorganic N with increasing aggregate-size class. At a later stage, however, the legacy effect of tillage histories controlled the PEs via microbial stoichiometry decomposition, as suggested by the higher DOC-to-inorganic N and DOC-to-available P stoichiometries in CT than NT. Our study underscores the importance of incorporating both spatial and temporal microbial dynamics for a comprehensive understanding of the mechanisms underlying SOC priming, especially in the context of long-term contrasting tillage practices.
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Affiliation(s)
- Yeye Zhang
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Yunfei Ren
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Shenglin Zhou
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Xiaoyu Ning
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Xiukang Wang
- College of Life Sciences, Yan'an University, Yan'an 716000, PR China
| | - Yanming Yang
- College of Agronomy, Inner Mongolia Agricultural University, Hohhot 010019, PR China
| | - Shikun Sun
- College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Nangia Vinay
- International Center for Agricultural Research in the Dry Areas (ICARDA), P.O. Box 6299-10112, Rabat, Morocco
| | - Michael Bahn
- Department of Ecology, University of Innsbruck, Innsbruck 6020, Austria
| | - Juan Han
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Yang Liu
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Youcai Xiong
- State Key Laboratory of Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou 730000, PR China
| | - Yuncheng Liao
- Collage of Agronomy, Shanxi Agricultural University, Taigu, Jinzhong, 030800, PR China
| | - Fei Mo
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China.
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Yang Q, Liu Z, Bai E. Comparison of carbon and nitrogen accumulation rate between bog and fen phases in a pristine peatland with the fen-bog transition. GLOBAL CHANGE BIOLOGY 2023; 29:6350-6366. [PMID: 37602716 DOI: 10.1111/gcb.16915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Accepted: 07/17/2023] [Indexed: 08/22/2023]
Abstract
Long-term carbon and nitrogen dynamics in peatlands are affected by both vegetation production and decomposition processes. Here, we examined the carbon accumulation rate (CAR), nitrogen accumulation rate (NAR) and δ13 C, δ15 N of plant residuals in a peat core dated back to ~8500 cal year BP in a temperate peatland in Northeast China. Impacted by the tephra during 1160 and 789 cal year BP and climate change, the peatland changed from a fen dominated by vascular plants to a bog dominated by Sphagnum mosses. We used the Clymo model to quantify peat addition rate and decay constant for acrotelm and catotelm layers during both bog and fen phases. Our studied peatland was dominated by Sphagnum fuscum during the bog phase (789 to -59 cal year BP) and lower accumulation rates in the acrotelm layer was found during this phase, suggesting the dominant role of volcanic eruption in the CAR of the peat core. Both mean CAR and NAR were higher during the bog phase than during the fen phase in our study, consistent with the results of the only one similar study in the literature. Because the input rate of organic matter was considered to be lower during the bog phase, the decomposition process must have been much lower during the bog phase than during the fen phase and potentially controlled CAR and NAR. During the fen phase, CAR was also lower under higher temperature and summer insolation, conditions beneficial for decomposition. δ15 N of Sphagnum hinted that nitrogen fixation had a positive effect on nitrogen accumulation, particular in recent decades. Our study suggested that decomposition is more important for carbon and nitrogen sequestration than production in peatlands in most conditions and if future climate changes or human disturbance increase decomposition rate, carbon sequestration in peatlands will be jeopardized.
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Affiliation(s)
- Qiannan Yang
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education, School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Ziping Liu
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education, School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Edith Bai
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education, School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
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5
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Zhu N, Yu Q, Song L, Sheng H. The Inhibiting Effects of High-Dose Biochar Application on Soil Microbial Metagenomics and Rice ( Oryza sativa L.) Production. Int J Mol Sci 2023; 24:15043. [PMID: 37894726 PMCID: PMC10606461 DOI: 10.3390/ijms242015043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 10/07/2023] [Accepted: 10/09/2023] [Indexed: 10/29/2023] Open
Abstract
Biochar is usually considered as an organic improver which can improve soil and increase crop yields. However, the unrestricted application of biochar to normal-fertility farmland will cause chemical stress on crops and affect agricultural production. At present, the effects and mechanisms of high-dose applications of biochar on rice (Oryza sativa L.) production and soil biological characteristics have not been fully studied. In this greenhouse pot experiment, combined with soil microbial metagenomics, three treatments in triplicates were conducted to explore the responses of rice production, soil chemical properties, and soil biological properties to high-dose applications of biochar (5%, w/w) prepared using peanut waste (peanut hulls and straw). The results show that peanut hulls, with a loose texture and pore structure, are a raw material with stronger effects for preparing biochar than peanut straw in terms of its physical structure. In a rice monoculture system, high-dose applications of biochar (5%, w/w) can slightly increase the grains per spike, while significantly inhibiting the spike number per pot and the percentage of setting. High-dose applications of biochar also have significant negative effects on the diversity and stability of soil bacterial and archaeal communities. Moreover, the microbial metabolism and nutrient cycling processes are also significantly affected by changing the soil carbon/nitrogen ratio. This study discusses the response mechanisms of rice production and soil biology to high-dose biochar applications, and complements the understanding of irrational biochar application on agricultural production and land sustainability.
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Affiliation(s)
- Nanyan Zhu
- College of Animal Science and Technology, Yangzhou University, Yangzhou 225000, China;
| | - Qiaoqiao Yu
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou 225000, China;
| | - Lingqi Song
- College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225000, China;
| | - Haijun Sheng
- College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225000, China;
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Liu X, Chen Q, Zhang H, Zhang J, Chen Y, Yao F, Chen Y. Effects of exogenous organic matter addition on agricultural soil microbial communities and relevant enzyme activities in southern China. Sci Rep 2023; 13:8045. [PMID: 37198213 DOI: 10.1038/s41598-023-33498-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 04/13/2023] [Indexed: 05/19/2023] Open
Abstract
Soil microbial community composition plays a key role in the decomposition of organic matter, while the quality of exogenous organic matter (EOM: rice straw, roots and pig manure) can influence soil chemical and biological properties. However, the evidences of the effect of combination of crop residues and pig manure on the changes in soil microbial community and enzymes activities are scarce. A greenhouse pot experiment was conducted to investigate the potential effect of EOM by analyzing soil properties, enzyme activities and microbial communities. The experiment consisted of eight treatments: CK (control), S (1% (w/w) rice straw), R (1% (w/w) rice root), SR (1% (w/w) rice straw + 1% (w/w) rice root), and added 1% (w/w) pig manure to CK, S, R and SR, respectively. Results showed that the straw treatment significantly increased the microbial biomass (carbon and nitrogen) and total carbon and nitrogen contents, cellulase and β-1,4-glucosidase activities, bacteria (i.e., gram-positive bacteria and gram-negative bacteria) PLFAs contents relative to CK regardless of whether pig manure was added. Moreover, the interaction between crop residues (e.g., straw and roots) and pig manure significantly influenced the contents of microbial biomass nitrogen and microbial biomass phosphorus, and the ratio of gram-positive bacteria to gram-negative bacteria. Redundance analysis confirmed that pH, nitrate nitrogen, ammonium nitrogen and dissolve organic carbon contents were significantly associated with soil microbial community under crop residues without pig manure addition. Furthermore, the experiment results showed that pig manure application not only provided more abundant nutrients (C, N and P) but also induced higher microbial and enzymatic activity compared with no pig manure addition. Our findings suggest that the combination of above-ground straw and pig manure is a better option for improving the functions of soil ecosystem.
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Affiliation(s)
- Xing Liu
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Qi Chen
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Huicheng Zhang
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Jiaen Zhang
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China.
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China.
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China.
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou, 510642, China.
| | - Yuting Chen
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Fucheng Yao
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Yingtong Chen
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, 510642, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
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Sun Y, Li X, Li X, Wang J. Deciphering the Fingerprint of Dissolved Organic Matter in the Soil Amended with Biodegradable and Conventional Microplastics Based on Optical and Molecular Signatures. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:15746-15759. [PMID: 36301071 DOI: 10.1021/acs.est.2c06258] [Citation(s) in RCA: 55] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Biodegradable polymers are promoted as promising alternatives for conventional non-degradable plastics, but they may also negatively impact soil ecosystems. Here, we estimated the effects of biodegradable (polylactide (PLA) and polybutylene succinate (PBS)) and non-biodegradable (polyethylene (PE) and polystyrene (PS)) microplastics at a concentration of 1% (w/w) on dissolved organic matter (DOM) in two soil types, a black soil (BS) and a yellow soil (YS), by using fluorescence excitation-emission matrix spectroscopy and ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). PBS significantly increased the contents of soil dissolved organic carbon (DOC) and the relative intensities of protein-like components. The turnover rates of soil DOM were statistically higher in PBS treatments (0.106 and 0.196, p < 0.001) than those in other microplastic groups. The FT-ICR-MS results indicated that more labile-active DOM molecules were preferentially obtained in biodegradable microplastic treatments, which may be attributed to the polymer degradation. The conventional microplastics showed no significant effects on the optical characteristics but changed the molecular compositions of the soil DOM. More labile DOM molecules were observed in BS samples treated with PE compared to the control, while the conventional microplastics decreased the DOM lability in YS soil. The distinct priming effects of plastic-leached DOM may trigger the DOM changes in different soils. This study provided important information for further understanding the impact of microplastics on soil carbon processes.
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Affiliation(s)
- Yuanze Sun
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Xinfei Li
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Xiaomin Li
- Institute of Quality Standard and Testing Technology for Agro-Products, The Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Jie Wang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
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Yang J, Liang X, Jiang N, Huang Z, Mou F, Zu Y, Li Y. Adsorption Characteristics of Modified Eucalyptus Sawdust for Cadmium and Arsenic and Its Potential for Soil Remediation. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2022; 108:1056-1063. [PMID: 35034137 DOI: 10.1007/s00128-021-03455-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Accepted: 12/30/2021] [Indexed: 06/14/2023]
Abstract
In order to explore the utilization of Eucalyptus sawdust (C) and develop its remediation potential in cadmium and arsenic contaminated soil, Eucalyptus sawdust were modified by FeCl3 and NaOH coprecipitation (MC). Characterization technology and pot experiment were used to explore the adsorption mechanism of cadmium and arsenic by MC and the effect of soil remediation. The results showed that iron oxide was loaded on the surface of Eucalyptus sawdust and destroyed the semi fiber structure. The adsorption mechanisms of cadmium and arsenic included electrostatic attraction, precipitation, complexation, redox. The soil pH value reduced by 0.12-0.18 units with 0.25%-1% ratio of application rates of MC to soil weight treatment; The contents of available cadmium and arsenic were reduced by 18%-25% and 12%-18%; MC could promote the transformation of Cd and As from highly active formation to low active formation and had a good application prospect for Cd and As compound pollution remediation.
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Affiliation(s)
- Jingmin Yang
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Xinran Liang
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Na Jiang
- College of Animal Science and Technology, Yunnan Agricultural University, Kunming, 650201, China
| | - Zhihong Huang
- Shengqing Environmental Protection Co., Ltd, Kunming, China
| | - Fengli Mou
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Yanqun Zu
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China.
| | - Yuan Li
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
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9
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Shu X, Zou Y, Shaw LJ, Todman L, Tibbett M, Sizmur T. Applying cover crop residues as diverse mixtures increases initial microbial assimilation of crop residue-derived carbon. EUROPEAN JOURNAL OF SOIL SCIENCE 2022; 73:e13232. [PMID: 35909880 PMCID: PMC9311145 DOI: 10.1111/ejss.13232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Revised: 02/28/2022] [Accepted: 03/04/2022] [Indexed: 06/12/2023]
Abstract
Increasing the diversity of crops grown in arable soils delivers multiple ecological functions. Whether mixtures of residues from different crops grown in polyculture contribute to microbial assimilation of carbon (C) to a greater extent than would be expected from applying individual residues is currently unknown. In this study, we used 13C isotope labelled cover crop residues (buckwheat, clover, radish, and sunflower) to track microbial assimilation of plant residue-derived C using phospholipid fatty acid (PLFA) analysis. We also quantified microbial assimilation of C derived from the soil organic matter (SOM) because fresh residue inputs also prime the decomposition of SOM. To consider the initial stages of residue decomposition, and preclude microbial turnover, we compared a quaternary mixture of residues with the average effect of their four components 1 day after incorporation. Our results show that the microbial biomass carbon (MBC) in the treatment receiving the mixed residue was significantly greater, by 132% (3.61 μg C g-1), than the mean plant residue-derived MBC in treatments receiving the four individual components of the mixture. However, there was no evidence that the mixture resulted in any additional assimilation of C derived from native SOM than the average observed in individual residue treatments. We surmise that, during the initial stages of crop residue decomposition, a greater biodiversity of residues increases microbial assimilation to a greater extent than would be expected from applying individual residues either due to faster decomposition or greater carbon use efficiency (CUE). This might be facilitated by functional complementarity in the soil microbiota, permitted by a greater diversity of substrates, reducing competition for any single substrate. Therefore, growing and incorporating crop polycultures (e.g., cover crop mixtures) could be an effective method to increase microbial C assimilation in the early stages of cover crop decomposition. Highlights The effect of mixing crop residues on assimilation of C by soil microbial biomass was investigated.The study is important due to recent interest in diverse cover crop mixtures for arable systems.Mixing crop residues enhanced the assimilation of plant residue-derived C into microbial biomass.Growing and incorporating cover crop polycultures may enhance C storage in arable soils.
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Affiliation(s)
- Xin Shu
- Soil Research Centre, Department of Geography and Environmental ScienceUniversity of ReadingReadingUK
| | - Yiran Zou
- Soil Research Centre, Department of Geography and Environmental ScienceUniversity of ReadingReadingUK
| | - Liz J. Shaw
- Soil Research Centre, Department of Geography and Environmental ScienceUniversity of ReadingReadingUK
| | - Lindsay Todman
- Soil Research Centre, Department of Sustainable Land Management, School of Agriculture, Policy and DevelopmentUniversity of ReadingReadingUK
| | - Mark Tibbett
- Soil Research Centre, Department of Sustainable Land Management, School of Agriculture, Policy and DevelopmentUniversity of ReadingReadingUK
| | - Tom Sizmur
- Soil Research Centre, Department of Geography and Environmental ScienceUniversity of ReadingReadingUK
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Understanding the Priming Effect and the Routes and Stocks of C in Incubated Soil with Residue Inputs. HORTICULTURAE 2022. [DOI: 10.3390/horticulturae8020154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The priming effect is a strong short-term change of organic matter decomposition that can accelerate or slow residue decomposition, and release or immobilize a large amount of carbon (C) and nitrogen (N) in soil. Our goal here was to (i) monitor the influence of residue additions in stocks of C and N in residues and soil (ii) and identify the main routes of C stabilization and the priming effect in soil. An incubation study was run with residue additions of high C:N (brachiaria and sugarcane) and low C:N (soybean) in soil. CO2 emissions, stocks of C (humic substance; labile C and C mic) and N (soil and residues) were monitored for 50 days, and the priming effect and route of C were calculated. Results showed that after incubation the final stocks of humin increased (31%), while there were reductions of humic (54%) and fulvic acids (42%). The stocks of soil total C and N were constant, while the residue C was decreased. The residues with high C:N immobilized N, while there was a decrease of N in residues with low C:N. There was a positive priming effect and a C stabilization route concentrated from C mic to humic substances with the addition of low C:N, while inputs of high C:N diversified the C stabilization routes from C mic or labile C to humic substances. The C routes were intense because the study was run in control conditions with a loam soil and adequate conditions of water, oxygen, and temperature.
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11
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Soil Water Retention as Affected by Management Induced Changes of Soil Organic Carbon: Analysis of Long-Term Experiments in Europe. LAND 2021. [DOI: 10.3390/land10121362] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Soil water retention (SWR) is an important soil property related to soil structure, texture, and organic matter (SOM), among other properties. Agricultural management practices affect some of these properties in an interdependent way. In this study, the impact of management-induced changes of soil organic carbon (SOC) on SWR is evaluated in five long-term experiments in Europe (running from 8 up to 54 years when samples were taken). Topsoil samples (0–15 cm) were collected and analysed to evaluate the effects of three different management categories, i.e., soil tillage, the addition of exogenous organic materials, the incorporation of crop residues affecting SOC and water content under a range of matric potentials. Changes in the total SOC up to 10 g C kg−1 soil (1%) observed for the different management practices, do not cause statistically significant differences in the SWR characteristics as expected. The direct impact of the SOC on SWR is consistent but negligible, whereas the indirect impact of SOC in the higher matric potentials, which are mainly affected by soil structure and aggregate composition, prevails. The different water content responses under the various matric potentials to SOC changes for each management group implies that one conservation measure alone has a limited effect on SWR and only a combination of several practices that lead to better soil structure, such as reduced soil disturbances combined with increased SOM inputs can lead to better water holding capacity of the soil.
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Decomposition of peatland DOC affected by root exudates is driven by specific r and K strategic bacterial taxa. Sci Rep 2021; 11:18677. [PMID: 34548501 PMCID: PMC8455546 DOI: 10.1038/s41598-021-97698-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 08/26/2021] [Indexed: 02/08/2023] Open
Abstract
In peatlands, decomposition of organic matter is limited by harsh environmental conditions and low decomposability of the plant material. Shifting vegetation composition from Sphagnum towards vascular plants is expected in response to climate change, which will lead to increased root exudate flux to the soil and stimulation of microbial growth and activity. We aimed to evaluate the effect of root exudates on the decomposition of recalcitrant dissolved organic carbon (DOC) and to identify microorganisms involved in this process. The exudation was mimicked by an addition of a mixture of 13C labelled compounds into the recalcitrant DOC in two realistic levels; 2% and 5% of total DOC and peatland porewater with added root exudates was incubated under controlled conditions in the lab. The early stage of incubation was characterized by a relative increase of r-strategic bacteria mainly from Gammaproteobacteria and Bacteriodetes phyla within the microbial community and their preferential use of the added compounds. At the later stage, Alphaproteobacteria and Acidobacteria members were the dominating phyla, which metabolized both the transformed 13C compounds and the recalcitrant DOC. Only higher exudate input (5% of total DOC) stimulated decomposition of recalcitrant DOC compared to non-amended control. The most important taxa with a potential to decompose complex DOC compounds were identified as: Mucilaginibacter (Bacteriodetes), Burkholderia and Pseudomonas (Gammaproteobacteria) among r-strategists and Bryocella and Candidatus Solibacter (Acidobacteria) among K-strategists. We conclude that increased root exudate inputs and their increasing C/N ratio stimulate growth and degradation potential of both r-strategic and K-strategic bacteria, which make the system more dynamic and may accelerate decomposition of peatland recalcitrant DOC.
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Metagenomic Study of the Community Structure and Functional Potentials in Maize Rhizosphere Microbiome: Elucidation of Mechanisms behind the Improvement in Plants under Normal and Stress Conditions. SUSTAINABILITY 2021. [DOI: 10.3390/su13148079] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The community of microbes in the rhizosphere region is diverse and contributes significantly to plant growth and crop production. Being an important staple and economic crop, the maize rhizosphere microbiota has been studied in the past using culture-dependent techniques. However, these limited culturing methods often do not help in understanding the complex community of microbes in the rhizosphere. Moreover, the vital biogeochemical processes carried out by these organisms are yet to be fully characterized. Herein, shotgun metagenomics, which enables the holistic study of several microbial environments, was employed to examine the community structure and functional potentials of microbes in the maize rhizosphere and to assess the influence of environmental variables on these. The dominant microbial phyla found in the soil environments include Actinobacteria, Microsporidia, Bacteroidetes, Thaumarchaeota, Proteobacteria and Firmicutes. Carbohydrate metabolism, protein metabolism and stress metabolism constitute the major functional categories in the environments. The beta diversity analysis indicated significant differences (p = 0.01) in the community structure and functional categories across the samples. A correlation was seen between the physical and chemical properties of the soil, and the structural and functional diversities. The canonical correspondence analysis carried out showed that phosphorus, N-NO3, potassium and organic matter were the soil properties that best influenced the structural and functional diversities of the soil microbes. It can be inferred from this study that the maize rhizosphere is a hotspot for microorganisms of agricultural and biotechnological importance which can be used as bioinoculants for sustainable agriculture.
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Tan B, Li Y, Liu T, Tan X, He Y, You X, Leong KH, Liu C, Li L. Response of Plant Rhizosphere Microenvironment to Water Management in Soil- and Substrate-Based Controlled Environment Agriculture (CEA) Systems: A Review. FRONTIERS IN PLANT SCIENCE 2021; 12:691651. [PMID: 34456936 PMCID: PMC8385539 DOI: 10.3389/fpls.2021.691651] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 07/16/2021] [Indexed: 05/06/2023]
Abstract
As natural agroecology deteriorates, controlled environment agriculture (CEA) systems become the backup support for coping with future resource consumption and potential food crises. Compared with natural agroecology, most of the environmental parameters of the CEA system rely on manual management. Such a system is dependent and fragile and prone to degradation, which includes harmful bacteria proliferation and productivity decline. Proper water management is significant for constructing a stabilized rhizosphere microenvironment. It has been proved that water is an efficient tool for changing the availability of nutrients, plant physiological processes, and microbial communities within. However, for CEA issues, relevant research is lacking at present. The article reviews the interactive mechanism between water management and rhizosphere microenvironments from the perspectives of physicochemical properties, physiological processes, and microbiology in CEA systems. We presented a synthesis of relevant research on water-root-microbes interplay, which aimed to provide detailed references to the conceptualization, research, diagnosis, and troubleshooting for CEA systems, and attempted to give suggestions for the construction of a high-tech artificial agricultural ecology.
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Affiliation(s)
- Bo Tan
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
| | - Yihan Li
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
| | - Tiegang Liu
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
| | - Xiao Tan
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
| | - Yuxin He
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
| | - Xueji You
- Department of Hydraulic Engineering, College of Civil Engineering, Tongji University, Shanghai, China
- Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin, Austin, TX, United States
| | - Kah Hon Leong
- Department of Environmental Engineering, Faculty of Engineering and Green Technology, Universiti Tunku Abdul Rahman, Kampar, Malaysia
| | - Chao Liu
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
- *Correspondence: Chao Liu,
| | - Longguo Li
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu, China
- Longguo Li,
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15
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Yu G, Zhao H, Chen J, Zhang T, Cai Z, Zhou G, Li Z, Qiu Z, Wu Z. Soil microbial community dynamics mediate the priming effects caused by in situ decomposition of fresh plant residues. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 737:139708. [PMID: 32474301 DOI: 10.1016/j.scitotenv.2020.139708] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 05/19/2020] [Accepted: 05/23/2020] [Indexed: 06/11/2023]
Abstract
Extreme climate events always leave numerous fresh plant materials (FOM) in forests, thus increasing the input of carbon (C) resources to soil system. The input of exogenous C may accelerate or inhibit the decomposition of soil organic carbon (SOC), which is defined as the positive or negative priming effect (PE), respectively. However, the characteristics and microbial mechanisms of PE caused by FOM remain unknown. A 110-day in situ soil incubation experiment was conducted in a subtropical forest, with 13C-labeled fresh leaves from four native species (Castanopsis fissa, CF; Pinus massoniana, PM; Machilus chekiangensis, MC; and Castanopsis chinensis, CC) serving as the FOM respectively. We measured the CO2 effluxes derived from 13C-labeled FOM and soil, and the composition and diversity of soil bacterial and fungal communities throughout the incubation to explore the correlations between PE and microbial attributes. As a result, the PE caused by FOM inputs were negative initially but became positive after 61 d. The FOM decomposition rate was positively related to PE intensity, and there was a significant difference between coniferous and broadleaved species in the middle period of the study. More than 77% of the total C lost from FOM was emitted as CO2, indicating that FOM-C serves as an energy resource for soil microbes. The α-diversity of the bacterial community at genus-level showed significantly positive correlation with PE at 24 d, and the composition of bacterial community at OTU-level had a marked relationship with the PE between 24-110 d. The relationship between fungal community diversity and composition with PE was only observed at 7 and 110 d, respectively. This study firstly investigated the patterns of PE resulted from numerous FOM input, and the results suggested that soil bacterial community, in particular the Actinobacteria phyla, played a more important role in triggering such PEs than fungal community.
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Affiliation(s)
- Guangcan Yu
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Houben Zhao
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Jie Chen
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Tianlin Zhang
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Zhanglin Cai
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Guangyi Zhou
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Zhaojia Li
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Zhijun Qiu
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China
| | - Zhongmin Wu
- Research Institute of Tropical Forestry, Chinese Academy of Forestry, Longdong, Guangzhou 510520, PR China.
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16
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Metagenomic profiling of bacterial diversity and community structure in termite mounds and surrounding soils. Arch Microbiol 2020; 202:2697-2709. [PMID: 32725600 DOI: 10.1007/s00203-020-01994-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Revised: 06/06/2020] [Accepted: 07/21/2020] [Indexed: 10/23/2022]
Abstract
The study focuses on analysis of the compositional and diversity of bacteria in termite mound soils in comparison with the surrounding soils to verify the assertion that the high nutrient concentrations in termite mound soils influence a complex diversity of microorganisms. Here, whole DNA was extracted from soil samples collected from termite mounds and their surrounding soils which were 10 m apart and subsequently, sequenced using shotgun metagenomic approach. Our findings showed that both environments have several soil bacterial phyla in common. However, Proteobacteria and Actinobacteria significantly dominated the termite mound soils and the surrounding soils, respectively, with Tenericutes peculiar to only the termite mound soils. Furthermore, Bergeyella, Gloeothece, Thalassospira, and Glaciecola genera were exclusively identified in the termite mound soil samples. Diversity analysis showed that bacterial composition was different among the four sites (phyla level). This study also revealed a lot of unclassified groups of bacteria and this could point to the presence of potentially novel species. The differences observed in the bacterial structure and diversity from this study may be ascribed to variances in the physicochemical nature existing between the two environments. Mapping out schemes to culture these unclassified groups of bacteria discovered from this study would possibly set the platform for the discovery of novel bacteria for biotechnological applications.
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Raes EJ, Karsh K, Kessler AJ, Cook PLM, Holmes BH, van de Kamp J, Bodrossy L, Bissett A. Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries? Front Microbiol 2020; 11:1261. [PMID: 32655525 PMCID: PMC7325967 DOI: 10.3389/fmicb.2020.01261] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 05/18/2020] [Indexed: 11/13/2022] Open
Abstract
Increasing nitrogen (N) loads present a threat to estuaries, which are among the most heavily populated and perturbed parts of the world. N removal is largely mediated by the sediment microbial process of denitrification, in direct competition to dissimilatory nitrate reduction to ammonium (DNRA), which recycles nitrate to ammonium. Molecular proxies for N pathways are increasingly measured and analyzed, a major question in microbial ecology, however, is whether these proxies can add predictive power around the fate of N. We analyzed the diversity and community composition of sediment nirS and nrfA genes in 11 temperate estuaries, covering four types of land use in Australia, and analyzed how these might be used to predict N removal. Our data suggest that sediment microbiomes play a central role in controlling the magnitude of the individual N removal rates in the 11 estuaries. Inclusion, however, of relative gene abundances of 16S, nirS, nrfA, including their ratios did not improve physicochemical measurement-based regression models to predict rates of denitrification or DNRA. Co-occurrence network analyses of nirS showed a greater modularity and a lower number of keystone OTUs in pristine sites compared to urban estuaries, suggesting a higher degree of niche partitioning in pristine estuaries. The distinctive differences between the urban and pristine network structures suggest that the nirS gene could be a likely gene candidate to understand the mechanisms by which these denitrifying communities form and respond to anthropogenic pressures.
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Affiliation(s)
- Eric J Raes
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
| | - Kristen Karsh
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
| | - Adam J Kessler
- School of Earth, Atmosphere and Environment, Monash University, Melbourne, VIC, Australia
| | - Perran L M Cook
- Water Studies Centre, School of Chemistry, Monash University, Melbourne, VIC, Australia
| | - Bronwyn H Holmes
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
| | - Jodie van de Kamp
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
| | - Levente Bodrossy
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
| | - Andrew Bissett
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Hobart, TAS, Australia
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18
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Menichetti L, Ågren GI, Barré P, Moyano F, Kätterer T. Generic parameters of first-order kinetics accurately describe soil organic matter decay in bare fallow soils over a wide edaphic and climatic range. Sci Rep 2019; 9:20319. [PMID: 31889048 PMCID: PMC6937324 DOI: 10.1038/s41598-019-55058-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 11/19/2019] [Indexed: 12/17/2022] Open
Abstract
The conventional soil organic matter (SOM) decay paradigm considers the intrinsic quality of SOM as the dominant decay limitation with the result that it is modelled using simple first-order decay kinetics. This view and modelling approach is often criticized for being too simplistic and unreliable for predictive purposes. It is still under debate if first-order models can correctly capture the variability in temporal SOM decay observed between different agroecosystems and climates. To address this question, we calibrated a first-order model (Q) on six long-term bare fallow field experiments across Europe. Following conventional SOM decay theory, we assumed that parameters directly describing SOC decay (rate of SOM quality change and decomposer metabolism) are thermodynamically constrained and therefore valid for all sites. Initial litter input quality and edaphic interactions (both local by definition) and microbial efficiency (possibly affected by nutrient stoichiometry) were instead considered site-specific. Initial litter input quality explained most observed kinetics variability, and the model predicted a convergence toward a common kinetics over time. Site-specific variables played no detectable role. The decay of decades-old SOM seemed mostly influenced by OM chemistry and was well described by first order kinetics and a single set of general kinetics parameters.
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Affiliation(s)
- Lorenzo Menichetti
- Department of Ecology, Swedish University of Agricultural Sciences (SLU), Box 7044, 75007, Uppsala, Sweden.
| | - Göran I Ågren
- Department of Ecology, Swedish University of Agricultural Sciences (SLU), Box 7044, 75007, Uppsala, Sweden
| | - Pierre Barré
- Laboratoire de Geólogie de l'ENS, PSL Research University - CNRS UMR8538, 75005, Paris, France
| | - Fernando Moyano
- Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
| | - Thomas Kätterer
- Department of Ecology, Swedish University of Agricultural Sciences (SLU), Box 7044, 75007, Uppsala, Sweden
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Yu X, Chao L, Zhang W, Chen L, Yang Q, Zhang G, Wang S. Effects of inorganic nitrogen and litters of Masson Pine on soil organic carbon decomposition. PLoS One 2019; 14:e0222973. [PMID: 31557199 PMCID: PMC6763213 DOI: 10.1371/journal.pone.0222973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 09/11/2019] [Indexed: 11/18/2022] Open
Abstract
Soil organic matter (SOM) mineralization represents one of the largest fluxes in the global carbon cycle. Numerous studies have shown that soil organic carbon decomposition was largely changed owing to the addition of litter, however very few studies have focused on the role of plant organs in the priming effects (PEs). Here, we studied the effects of different Pinus massoniana organs (fresh leaf, leaf litter, twigs, absorptive fine roots, and transport fine roots) on C4 soil respiration by applying the 13C isotopic natural abundance method. Results showed that the effects of plant organs on PEs were significantly different at the end of 210 days incubation, which can be ascribed to contrasting organs traits especially non-structural carbohydrates and water-soluble compounds. Transport fine roots and fresh leaf induced positive PE, whereas absorptive fine roots induced negative PE. Leaf litter did not change the native SOC decomposition. Plant organ addition can change the microbial community and result in the reduction of bacteria-to-fungi ratio. Our results suggest that with regard to determining the PE of the entire ecosystem, using fresh leaf to represent leaf litter and aboveground to represent underground is implausible.
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Affiliation(s)
- Xin Yu
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Lin Chao
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Weidong Zhang
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Huitong Experimental Station of Forest Ecology, Chinese Academy of Sciences, Huitong, China
- * E-mail: (WZ); (SW)
| | - Longchi Chen
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Huitong Experimental Station of Forest Ecology, Chinese Academy of Sciences, Huitong, China
| | - Qingpeng Yang
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Huitong Experimental Station of Forest Ecology, Chinese Academy of Sciences, Huitong, China
| | - Guangjie Zhang
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Silong Wang
- Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
- Huitong Experimental Station of Forest Ecology, Chinese Academy of Sciences, Huitong, China
- * E-mail: (WZ); (SW)
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20
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Ghimire R, Bista P, Machado S. Long-term Management Effects and Temperature Sensitivity of Soil Organic Carbon in Grassland and Agricultural Soils. Sci Rep 2019; 9:12151. [PMID: 31434925 PMCID: PMC6704134 DOI: 10.1038/s41598-019-48237-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 07/31/2019] [Indexed: 11/21/2022] Open
Abstract
Soil organic carbon (SOC) is integral to soil health and agroecosystem resilience. Despite much research, understanding of temperature sensitivity of SOC under long-term agricultural management is very limited. The main objective of this study was to evaluate SOC and nitrogen (N) dynamics under grasslands and winter wheat (Triticum aestivum L)-based crop rotations in the inland Pacific Northwest (IPNW), USA, and measure SOC mineralization under ambient and elevated incubation temperatures. Soil samples were collected from 0–10 and 10–20 cm depths from an undisturbed grassland (GP), winter wheat-pea (Pisum sativum L) rotations under conventional tillage (WP-CT) and no-tillage (WP-NT), and winter wheat-fallow rotation under conventional tillage (WF-CT) and analyzed for SOC and N pools. Soil samples were incubated at 20 °C and 30 °C for 10 weeks, and SOC mineralization rates were estimated using the first order kinetic model. The GP had the greatest amounts of SOC, total N (TN), and microbial biomass carbon (MBC) and WP rotations had higher inorganic N content than other treatments. The SOC mineralization at elevated incubation temperature was 72–177% more than at the ambient temperature, and the greatest effect was observed in GP. The SOC storage under a given management did not have consistent effects on soil carbon (C) and N mineralization under elevated temperature. However, soil disturbance under WP-CT and WF-CT accelerated SOC mineralization leading to soil C loss. Reducing tillage, integrating legumes into crop rotations, and growing perennial grasses could minimize SOC loss and have the potential to improve soil health and agroecosystem resilience under projected climate warming.
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Affiliation(s)
- Rajan Ghimire
- New Mexico State University, Agricultural Science Center, Clovis, NM, USA.
| | - Prakriti Bista
- Oregon State University, Columbia Basin Agricultural Research Center, Pendleton, OR, USA
| | - Stephen Machado
- Oregon State University, Columbia Basin Agricultural Research Center, Pendleton, OR, USA
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21
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Figueiredo V, Enrich-Prast A, Rütting T. Evolution of nitrogen cycling in regrowing Amazonian rainforest. Sci Rep 2019; 9:8538. [PMID: 31189968 PMCID: PMC6561906 DOI: 10.1038/s41598-019-43963-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 04/12/2019] [Indexed: 11/16/2022] Open
Abstract
Extensive regions of tropical forests are subjected to high rates of deforestation and forest regrowth and both are strongly affect soil nutrient cycling. Nitrogen (N) dynamics changes during forest regrowth and the recovery of forests and functioning similar to pristine conditions depends on sufficient N availability. We show that, in a chronosequence of Amazonian forests, gross nitrification and, as a result, nitrate-to-ammonium (NO3-: NH4+) ratio were lower in all stages of regrowing forests (10 to 40 years) compared to pristine forest. This indicates the evolution of a more conservative and closed N cycle with reduced risk for N leaking out of the ecosystem in regrowing forests. Furthermore, our results indicate that mineralization and nitrification are decoupled in young regrowing forests (10 years), such as that high gross mineralization is accompanied by low gross nitrification, demonstrating a closed N cycle that at the same time maintains N supply for forest regrowth. We conclude that the status of gross nitrification in disturbed soil is a key process to understand the mechanisms of and time needed for tropical forest recovery.
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Affiliation(s)
- Viviane Figueiredo
- Department of Botany, University Federal of Rio de Janeiro, 21941-971 Avenida Carlos Chagas Filho, Rio de Janeiro, Brazil
- Postgraduate Program in Geochemistry, University Federal Fluminense, 24020-007 Outeiro de São João Batista, Niterói, Brazil
- Postgraduate Program in Biotechnology, University Federal of Rio de Janeiro, 21941-971 Avenida Carlos Chagas Filho, Rio de Janeiro, Brazil
| | - Alex Enrich-Prast
- Department of Botany, University Federal of Rio de Janeiro, 21941-971 Avenida Carlos Chagas Filho, Rio de Janeiro, Brazil.
- Postgraduate Program in Geochemistry, University Federal Fluminense, 24020-007 Outeiro de São João Batista, Niterói, Brazil.
- Postgraduate Program in Biotechnology, University Federal of Rio de Janeiro, 21941-971 Avenida Carlos Chagas Filho, Rio de Janeiro, Brazil.
- Department of Environmental Change, Linköping University, 58183, Linköping, Sweden.
| | - Tobias Rütting
- Department of Earth Sciences, University of Gothenburg, 405 30, Gothenburg, Sweden
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22
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Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter. PLoS One 2019; 14:e0216730. [PMID: 31095604 PMCID: PMC6522013 DOI: 10.1371/journal.pone.0216730] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 04/28/2019] [Indexed: 12/02/2022] Open
Abstract
Priming effects (PEs) are defined as short-term changes in the turnover of soil organic matter (SOM) caused by the addition of easily degradable organic compounds to the soil. PEs are ubiquitous but the direction (acceleration or retardation of SOM decomposition) and magnitude are not easy to predict. It has been suggested that the ratio between the amount of added PE-triggering substrate to the size of initial soil microbial biomass is an important factor influencing PEs. However, this is mainly based on comparison of different studies and not on direct experimentation. The aim of the current study is to examine the impact of glucose-to-microbial biomass ratios on PEs for three different ecosystems. We did this by adding three different amounts of 13C-glucose with or without addition of mineral N (NH4NO3) to soils collected from arable lands, grasslands and forests. The addition of 13C-glucose was equivalent to 15%, 50% and 200% of microbial biomass C. After one month of incubation, glucose had induced positive PEs for almost all the treatments, with differences in magnitude related to the soil origin and the amount of glucose added. For arable and forest soils, the primed C increased with increasing amount of glucose added, whereas for grassland soils this relationship was negative. We found positive correlations between glucose-derived C and primed C and the strength of these correlations was different among the three ecosystems considered. Generally, additions of mineral N next to glucose (C:N = 15:1) had little effect on the flux of substrate-derived C and primed C. Overall, our study does not support the hypothesis that the trigger-substrate to microbial biomass ratio can be an important predictor of PEs. Rather our results indicate that the amount of energy obtained from decomposing trigger substrates is an important factor for the magnitude of PEs.
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Shinoda K, Yano M, Yoh M, Yoshida M, Makabe A, Yamagata Y, Houlton BZ, Koba K. Control of the Nitrogen Isotope Composition of the Fungal Biomass: Evidence of Microbial Nitrogen Use Efficiency. Microbes Environ 2019; 34:5-12. [PMID: 30555122 PMCID: PMC6440729 DOI: 10.1264/jsme2.me18082] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Accepted: 10/19/2018] [Indexed: 11/15/2022] Open
Abstract
Changes in 15N/14N in the soil microbial biomass during nitrogen (N) mineralization have been hypothesized to influence 15N/14N in soil organic matter among ecosystem sites. However, a direct experimental test of this mechanism has not yet been performed. To evaluate the potential control of microbial N mineralization on the natural N isotope composition, we cultured fungi (Aspergillus oryzae) in five types of media of varying C:N ratios of 5, 10, 30, 50, and 100 for 4 d, and tracked changes in δ15N in the microbial biomass, NH4+, and dissolved organic N (DON: glycine) over the course of the experiment. High rates of NH4+ excretion from A. oryzae were accompanied by an increase in δ15N in the microbial biomass in low C:N media (i.e., C/N<30). In contrast, NH4+ was strongly retained in higher C/N treatments with only minor (i.e., <1 ‰) changes being detected in δ15N in the microbial biomass. Differences in δ15N in the microbial biomass were attributed to the loss of low-δ15N NH4+ in low, but not high C/N substrates. We also detected a negative linear correlation between microbial nitrogen use efficiency (NUE) and Δ15N (δ15N-biomass-δ15N-glycine). These results suggest an isotope effect during NH4+ excretion in relatively N-repleted environments in which microbial NUE is low, which may explain the vertical patterns of organic matter δ15N in soil profiles.
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Affiliation(s)
- Kazuki Shinoda
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
| | - Midori Yano
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
- Center for Ecological Research, Kyoto UniversityShiga, 520–2113Japan
| | - Muneoki Yoh
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
| | - Makoto Yoshida
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
| | - Akiko Makabe
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
- Project Team for Development of New-generation Research Protocol for Submarine Resources, Japan Agency for Marine-Earth Science and TechnologyKanagawa, 237–0061Japan
| | - Yohei Yamagata
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
| | - Benjamin Z. Houlton
- Department of Land Air and Water Resources, University of CaliforniaDavis, California 95616USA
| | - Keisuke Koba
- Institute of Agriculture, Tokyo University of Agriculture and TechnologyTokyo, 183–8509Japan
- Center for Ecological Research, Kyoto UniversityShiga, 520–2113Japan
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24
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Three-Source Partitioning of Methane Emissions from Paddy Soil: Linkage to Methanogenic Community Structure. Int J Mol Sci 2019; 20:ijms20071586. [PMID: 30934889 PMCID: PMC6479939 DOI: 10.3390/ijms20071586] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 03/21/2019] [Accepted: 03/25/2019] [Indexed: 11/17/2022] Open
Abstract
Identification of the carbon (C) sources of methane (CH4) and methanogenic community structures after organic fertilization may provide a better understanding of the mechanism that regulate CH4 emissions from paddy soils. Based on our previous field study, a pot experiment with isotopic 13C labelling was designed in this study. The objective was to investigate the main C sources for CH4 emissions and the key environmental factor with the application of organic fertilizer in paddies. Results indicated that 28.6%, 64.5%, 0.4%, and 6.5% of 13C was respectively distributed in CO2, the plants, soil, and CH4 at the rice tillering stage. In total, organically fertilized paddy soil emitted 3.51 kg·CH4 ha−1 vs. 2.00 kg·CH4 ha−1 for the no fertilizer treatment. Maximum CH4 fluxes from organically fertilized (0.46 mg·m−2·h−1) and non-fertilized (0.16 mg·m−2·h−1) soils occurred on day 30 (tillering stage). The total percentage of CH4 emissions derived from rice photosynthesis C was 49%, organic fertilizer C < 0.34%, and native soil C > 51%. Therefore, the increased CH4 emissions from paddy soil after organic fertilization were mainly derived from native soil and photosynthesis. The 16S rRNA sequencing showed Methanosarcina (64%) was the dominant methanogen in paddy soil. Organic fertilization increased the relative abundance of Methanosarcina, especially in rhizosphere. Additionally, Methanosarcina sp. 795 and Methanosarcina sp. 1H1 co-occurred with Methanobrevibacter sp. AbM23, Methanoculleus sp. 25XMc2, Methanosaeta sp. HA, and Methanobacterium sp. MB1. The increased CH4 fluxes and labile methanogenic community structure in organically fertilized rice soil were primarily due to the increased soil C, nitrogen, potassium, phosphate, and acetate. These results highlight the contributions of native soil- and photosynthesis-derived C in paddy soil CH4 emissions, and provide basis for more complex investigations of the pathways involved in ecosystem CH4 processes.
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25
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Zhao S, Zhang S. Linkages between straw decomposition rate and the change in microbial fractions and extracellular enzyme activities in soils under different long-term fertilization treatments. PLoS One 2018; 13:e0202660. [PMID: 30208063 PMCID: PMC6135362 DOI: 10.1371/journal.pone.0202660] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Accepted: 08/07/2018] [Indexed: 11/18/2022] Open
Abstract
In order to study the linkages between straw decomposition rate and the change in soil biological properties after straw addition to different fertilized soils, we collected soils from three long-term fertilization treatments (no-fertilizer, CK; nitrogen, phosphorus, and potassium fertilizers, NPK; NPK plus straw (S), NPKS), and incubated maize straw with these soils at 25°C for 75 days. The average straw carbon dioxide (CO2) emission rate in the CK+straw (S), NPK+S, and NPKS+S treatments was 0.58±0.51, 0.66±0.53, and 0.74±0.58 μg C g-1soil h-1, respectively. The average increase in the contents of fungi, bacteria, and Actinomycetes under straw addition treatments than the control soils (CK, NPK, and NPKS, respectively) changed in the order of CK+S≤NPK+S <NPKS+S, while bacteria and Actinomycetes peaked later in the CK+SthanNPK+S and NPKS+S treatments. Bacterial abundance unchanged, Actinomycetes abundance decreased, but fungal abundance significantly increased in soils after straw addition. The average increase in the activities of β-glucosidase (BG), β-D-cellobiosidase (CB), and β-xylosidase (XYL) differed as: CK+S<NPK+S ≤ NPKS+S, and the highest activities and increments of them occurred later in the CK+S than NPK+S and NPKS+S treatments. Straw CO2 emission rate was poorly correlated with changes in the contents of microbial fractions across all straw addition treatments, but it was significant positively correlated with the increased activities of BG, CB, and XYL under the NPK+S and NPKS+S treatments. Our results indicated that chemical fertilization and straw return soils differently increased straw decomposition because of the different increases in microbial fractions and soil enzyme activities when compared to the no-fertilizer soil, and the decomposition process was more closely correlated with C-obtaining enzymes than microbial fractions.
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Affiliation(s)
- Shicheng Zhao
- Ministry of Agriculture Key Laboratory of Plant Nutrition and Fertilizer, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, PR China
- * E-mail:
| | - Shuiqing Zhang
- Institute of Plant Nutrition and Environmental Resources Science, Henan Academy of Agricultural Sciences, Zhengzhou, PR China
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26
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Fang Y, Nazaries L, Singh BK, Singh BP. Microbial mechanisms of carbon priming effects revealed during the interaction of crop residue and nutrient inputs in contrasting soils. GLOBAL CHANGE BIOLOGY 2018; 24:2775-2790. [PMID: 29603502 DOI: 10.1111/gcb.14154] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Revised: 02/21/2018] [Accepted: 03/06/2018] [Indexed: 06/08/2023]
Abstract
Agronomic practices such as crop residue return and additional nutrient supply are recommended to increase soil organic carbon (SOC) in arable farmlands. However, changes in the priming effect (PE) on native SOC mineralization in response to integrated inputs of residue and nutrients are not fully known. This knowledge gap along with a lack of understanding of microbial mechanisms hinders the ability to constrain models and to reduce the uncertainty to predict carbon (C) sequestration potential. Using a 13 C-labeled wheat residue, this 126-day incubation study examined the dominant microbial mechanisms that underpin the PE response to inputs of wheat residue and nutrients (nitrogen, phosphorus and sulfur) in two contrasting soils. The residue input caused positive PE through "co-metabolism," supported by increased microbial biomass, C and nitrogen (N) extracellular enzyme activities (EEAs), and gene abundance of certain microbial taxa (Eubacteria, β-Proteobacteria, Acidobacteria, and Fungi). The residue input could have induced nutrient limitation, causing an increase in the PE via "microbial nutrient mining" of native soil organic matter, as suggested by the low C-to-nutrient stoichiometry of EEAs. At the high residue, exogenous nutrient supply (cf. no-nutrient) initially decreased positive PE by alleviating nutrient mining, which was supported by the low gene abundance of Eubacteria and Fungi. However, after an initial decrease in PE at the high residue with nutrients, the PE increased to the same magnitude as without nutrients over time. This suggests the dominance of "microbial stoichiometry decomposition," supported by higher microbial biomass and EEAs, while Eubacteria and Fungi increased over time, at the high residue with nutrients cf. no-nutrient in both soils. Our study provides novel evidence that different microbial mechanisms operate simultaneously depending on organic C and nutrient availability in a residue-amended soil. Our results have consequences for SOC modeling and integrated nutrient management employed to increase SOC in arable farmlands.
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Affiliation(s)
- Yunying Fang
- NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, Australia
| | - Loïc Nazaries
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Penrith, NSW, Australia
| | - Bhupinder Pal Singh
- NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, Australia
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Barreto C, Lindo Z. Drivers of decomposition and the detrital invertebrate community differ across a hummock-hollow microtopology in Boreal peatlands. ECOSCIENCE 2017. [DOI: 10.1080/11956860.2017.1412282] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Carlos Barreto
- Department of Biology, University of Western Ontario, London, Canada
| | - Zoë Lindo
- Department of Biology, University of Western Ontario, London, Canada
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28
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Gross A, Angert A. Use of 13 C- and phosphate 18 O-labeled substrate for studying phosphorus and carbon cycling in soils: a proof of concept. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2017; 31:969-977. [PMID: 28370540 DOI: 10.1002/rcm.7863] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2017] [Revised: 03/21/2017] [Accepted: 03/24/2017] [Indexed: 06/07/2023]
Abstract
RATIONALE Stable isotope tracers are commonly used to track the transformations of organic carbon (C) and nitrogen (N) in soils but they have not been used to follow coupled cycles of phosphorus (P) and C because P has only one stable isotope. METHODS A novel dually labeled substrate, composed of a 13 C-labeled glucose backbone attached to a phosphate group with known δ18 OP value, was used to follow the fate of C and P derived from the same compound. The substrate was amended to soils from two natural oak forests, differing in their P levels, and the δ13 C values of respired CO2 and the δ18 OP values of soil bioavailable P were measured. RESULTS The δ18 OP values of the phosphate accumulated in the soil deviated from the expected value of P that is released from phosphomonoesters by enzymatic reactions (3.7 ‰) and were driven towards isotopic equilibrium with soil water (21.1 ‰), a process which is produced as part of microbial metabolism. This suggests that the substrate's P passed through the microbial biomass before accumulating in the soil, reflecting the rapid microbial turnover rate of the added P. A higher fraction of the substrate-C was respired in the higher P soil by the end of the incubation (20.3 % in comparison with 9.1 % in the lower P soil), indicating stronger energy limitation in the higher P soils. The higher 13 C glucose respiration in the higher P soil also triggered a stronger priming effect than in the lower P soil. CONCLUSIONS Our approach demonstrates that 13 C- and P-18 O-dually labeled tracers provide invaluable data on the fate of organic P and C in soils. We encourage biogeochemists and soil scientists to develop similar tracers of this kind. Copyright © 2017 John Wiley & Sons, Ltd.
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Affiliation(s)
- Avner Gross
- The Institute of Earth Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Alon Angert
- The Institute of Earth Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
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29
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Morrissey EM, Mau RL, Schwartz E, McHugh TA, Dijkstra P, Koch BJ, Marks JC, Hungate BA. Bacterial carbon use plasticity, phylogenetic diversity and the priming of soil organic matter. ISME JOURNAL 2017; 11:1890-1899. [PMID: 28387774 DOI: 10.1038/ismej.2017.43] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Revised: 02/06/2017] [Accepted: 02/14/2017] [Indexed: 12/26/2022]
Abstract
Microorganisms perform most decomposition on Earth, mediating carbon (C) loss from ecosystems, and thereby influencing climate. Yet, how variation in the identity and composition of microbial communities influences ecosystem C balance is far from clear. Using quantitative stable isotope probing of DNA, we show how individual bacterial taxa influence soil C cycling following the addition of labile C (glucose). Specifically, we show that increased decomposition of soil C in response to added glucose (positive priming) occurs as a phylogenetically diverse group of taxa, accounting for a large proportion of the bacterial community, shift toward additional soil C use for growth. Our findings suggest that many microbial taxa exhibit C use plasticity, as most taxa altered their use of glucose and soil organic matter depending upon environmental conditions. In contrast, bacteria that exhibit other responses to glucose (reduced growth or reliance on glucose for additional growth) clustered strongly by phylogeny. These results suggest that positive priming is likely the prototypical response of bacteria to sustained labile C addition, consistent with the widespread occurrence of the positive priming effect in nature.
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Affiliation(s)
- Ember M Morrissey
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV, USA
| | - Rebecca L Mau
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA
| | - Egbert Schwartz
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Theresa A McHugh
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Department of Biological Sciences, Colorado Mesa University, Grand Junction, CO, USA
| | - Paul Dijkstra
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Benjamin J Koch
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA
| | - Jane C Marks
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Bruce A Hungate
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.,Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
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30
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Qiao N, Xu X, Hu Y, Blagodatskaya E, Liu Y, Schaefer D, Kuzyakov Y. Carbon and nitrogen additions induce distinct priming effects along an organic-matter decay continuum. Sci Rep 2016; 6:19865. [PMID: 26806914 PMCID: PMC4726261 DOI: 10.1038/srep19865] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Accepted: 10/30/2015] [Indexed: 12/19/2022] Open
Abstract
Decomposition of organic matter (OM) in soil, affecting carbon (C) cycling and climate feedbacks, depends on microbial activities driven by C and nitrogen (N) availability. However, it remains unknown how decomposition of various OMs vary across global supplies and ratios of C and N inputs. We examined OM decomposition by incubating four types of OM (leaf litter, wood, organic matter from organic and mineral horizons) from a decay continuum in a subtropical forest at Ailao Mountain, China with labile C and N additions. Decomposition of wood with high C:N decreased for 3.9 to 29% with these additions, while leaf decomposition was accelerated only within a narrow C:N range of added C and N. Decomposition of OM from organic horizon was accelerated by high C:N and suppressed by low C:N, but mineral soil was almost entirely controlled by high C:N. These divergent responses to C and N inputs show that mechanisms for priming (i.e. acceleration or retardation of OM decomposition by labile inputs) vary along this decay continuum. We conclude that besides C:N ratios of OM, those of labile inputs control the OM decay in the litter horizons, while energy (labile C) regulates decomposition in mineral soil. This suggests that OM decomposition can be predicted from its intrinsic C:N ratios and those of labile inputs.
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Affiliation(s)
- Na Qiao
- Key Laboratory of Tropical Forest Ecology, Chinese Academy of Sciences, Xishuangbanna Tropical Botanical Garden, Menglun, Mengla, Yunnan 666303, China.,Graduate School of the Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Xingliang Xu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 11A Datun Road, Chaoyang District, Beijing 100101, China
| | - Yuehua Hu
- Key Laboratory of Tropical Forest Ecology, Chinese Academy of Sciences, Xishuangbanna Tropical Botanical Garden, Menglun, Mengla, Yunnan 666303, China
| | - Evgenia Blagodatskaya
- Department of Soil Science of Temperate Ecosystems, and Department of Agricultural Soil Science, University of Göttingen, Göttingen, Germany.,Institute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Institutskaya, 26 Pushchino, Moscow Region, Russia, 142290
| | - Yongwen Liu
- Key Laboratory for Earth Surface Processes, Ministry of Education, Peking University, Beijing 100871, China
| | - Douglas Schaefer
- Key Laboratory of Tropical Forest Ecology, Chinese Academy of Sciences, Xishuangbanna Tropical Botanical Garden, Menglun, Mengla, Yunnan 666303, China
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, and Department of Agricultural Soil Science, University of Göttingen, Göttingen, Germany
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