Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes. A mini-review

The hidden roots of wetland methane emissions

Wetlands are the largest natural source of methane (CH4 ) globally. Climate and land use change are expected to alter CH4 emissions but current and future wetland CH4 budgets remain uncertain. One important predictor of wetland CH4 flux, plants, play an important role in providing substrates for CH4 -producing microbes, increasing CH4 consumption by oxygenating the rhizosphere, and transporting CH4 from soils to the atmosphere. Yet, there remain various mechanistic knowledge gaps regarding the extent to which plant root systems and their traits influence wetland CH4 emissions. Here, we present a novel conceptual framework of the relationships between a range of root traits and CH4 processes in wetlands. Based on a literature review, we propose four main CH4 -relevant categories of root function: gas transport, carbon substrate provision, physicochemical influences and root system architecture. Within these categories, we discuss how individual root traits influence CH4 production, consumption, and transport (PCT). Our findings reveal knowledge gaps concerning trait functions in physicochemical influences, and the role of mycorrhizae and temporal root dynamics in PCT. We also identify priority research needs such as integrating trait measurements from different root function categories, measuring root-CH4 linkages along environmental gradients, and following standardized root ecology protocols and vocabularies. Thus, our conceptual framework identifies relevant belowground plant traits that will help improve wetland CH4 predictions and reduce uncertainties in current and future wetland CH4 budgets.

A comprehensive review on methane's dual role: effects in climate change and potential as a carbon-neutral energy source

The unprecedented population and anthropogenic activity rise have challenged the future look up for shifts in global temperature and climate patterns. Anthropogenic activities such as land fillings, building dams, wetlands converting to lands, combustion of biomass, deforestation, mining, and the gas and coal industries have directly or indirectly increased catastrophic methane (CH4) emissions at an alarming rate. Methane is 25 times more potent trapping heat when compared to carbon dioxide (CO2) in the atmosphere. A rise in atmospheric methane, on a 20-year time scale, has an impact of 80 times greater than that of CO2. With increased population growth, waste generation is rising and is predicted to reach 6 Mt by 2025. CH4 emitted from landfills is a significant source that accounts for 40% of overall global methane emissions. Various mitigation and emissions reduction strategies could significantly reduce the global CH4 burden at a cost comparable to the parallel and necessary CO2 reduction measures, reversing the CH4 burden to pathways that achieve the goals of the Paris Agreement. CH4 mitigation directly benefits climate change, has collateral impacts on the economy, human health, and agriculture, and considerably supports CO2 mitigation. Utilizing the CO2 from the environment, methanogens produce methane and lower their carbon footprint. NGOs and the general public should act on time to overcome atmospheric methane emissions by utilizing the raw source for producing carbon-neutral fuel. However, more research potential is required for green energy production and to consider investigating the untapped potential of methanogens for dependable energy generation.

Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient

Estuarine wetlands harbor considerable carbon stocks, but rising sea levels could affect their ability to sequester soil carbon as well as their potential to emit methane (CH4). While sulfate loading from seawater intrusion may reduce CH4 production due to the higher energy yield of microbial sulfate reduction, existing studies suggest other factors are likely at play. Our study of 11 wetland complexes spanning a natural salinity and productivity gradient across the San Francisco Bay and Delta found that while CH4 fluxes generally declined with salinity, they were highest in oligohaline wetlands (ca. 3-ppt salinity). Methanogens and methanogenesis genes were weakly correlated with CH4 fluxes but alone did not explain the highest rates observed. Taxonomic and functional gene data suggested that other microbial guilds that influence carbon and nitrogen cycling need to be accounted for to better predict CH4 fluxes at landscape scales. Higher methane production occurring near the freshwater boundary with slight salinization (and sulfate incursion) might result from increased sulfate-reducing fermenter and syntrophic populations, which can produce substrates used by methanogens. Moreover, higher salinities can solubilize ionically bound ammonium abundant in the lower salinity wetland soils examined here, which could inhibit methanotrophs and potentially contribute to greater CH4 fluxes observed in oligohaline sediments.IMPORTANCELow-level salinity intrusion could increase CH4 flux in tidal freshwater wetlands, while higher levels of salinization might instead decrease CH4 fluxes. High CH4 emissions in oligohaline sites are concerning because seawater intrusion will cause tidal freshwater wetlands to become oligohaline. Methanogenesis genes alone did not account for landscape patterns of CH4 fluxes, suggesting mechanisms altering methanogenesis, methanotrophy, nitrogen cycling, and ammonium release, and increasing decomposition and syntrophic bacterial populations could contribute to increases in net CH4 flux at oligohaline salinities. Improved understanding of these influences on net CH4 emissions could improve restoration efforts and accounting of carbon sequestration in estuarine wetlands. More pristine reference sites may have older and more abundant organic matter with higher carbon:nitrogen compared to wetlands impacted by agricultural activity and may present different interactions between salinity and CH4. This distinction might be critical for modeling efforts to scale up biogeochemical process interactions in estuarine wetlands.

Comparative flooding tolerance of Typha latifolia and Phalaris arundinacea in wetland restoration: Insights from photosynthetic CO2 response curves, photobiology and biomass allocation

Tall helophytes such as Typha latifolia and Phalaris arundinacea often rapidly colonise after rewetting of former agricultural soil and are therefore often the first plants to contribute to the soil carbon pool. In this study we carried out a mesocosm experiment where these two species grew at three different water levels relative to the soil surface (-15 cm, 0 cm, +15 cm). After eight weeks' growth, measurements of photosynthetic CO2-response curves, stomatal conductance and chlorophyll fluorescence of photosystem II were carried out to detect flooding stress. After 10 weeks' growth, the plants were harvested and biomass production, biomass allocation and specific leaf area were determined. T. latifolia had a higher and more stable photosynthetic performance across all water level treatments, which resulted in an overall higher aboveground and belowground production than P. arundinacea. In contrast, Vcmax and Jmax decreased by 41 % and 42 %, respectively from drained to flooded conditions with signs of flooding stress as impairment of the photosynthetic apparatus. Moreover, increasing water level resulted in maintenance of aboveground organs for P. arundinacea but a decrease in allocation to belowground organs. P. arundinacea did not invest in a higher specific leaf area to counter the decreased photosynthesis under flooding. From -15 cm to 0 cm water levels, P. arundinacea showed a 68 % reduction in belowground biomass, which has negative implication for carbon retention immediately after rewetting. In contrast, recolonization of T. latifolia is likely to be a suitable contributor to the soil carbon pool due to its stable physiology and high above- and belowground biomass production at all water depths, and also likely under natural water level fluctuations. We showed that even though both species are generally considered wetland plants, they are likely to support considerably different photosynthetic carbon assimilation and soil carbon sequestration rates.

Sources and controls of greenhouse gases and heavy metals in mine water: A continuing climate legacy

Water pollution arising from abandoned coal mines, is second only to sewage as a source of freshwater pollution and in coalfield catchments mine water can be the dominant pollutant, with oxidised iron smothering the bed of receiving rivers. This study measured greenhouse gases in mine water outflows from sixteen sites across the Midland Valley in Scotland. Radiogenic and stable carbon isotopes measurements (Δ14C and δ13C) were used to determine the sources of both methane (CH4) and carbon dioxide (CO2) produced within the flooded mine environment. Concentrations of CH4-C ranged from 20 to 215 μg l-1 and CO2-C from 30 to 120 mg l-1, with CO2 accounting for 97 % of the mine water global warming potential. Methane origins included 51 % modern biogenic, 41 % thermogenic and 8 % from hydrogenotrophic methanogenesis of coal. The most significant inverse impact on biogenic CH4 concentrations was sulphate, most likely due to sulphate reducing bacteria outcompeting methanogens. Carbon dioxide origins included 64 % from the dissolution of limestone, 21 % from terrestrial organic carbon and 15 % from coal. The limestone derived CO2 was positively correlated with high sulphate concentrations, which resulted in sulphuric acid and caused the dissolution of carbonate from limestone. The mine waters experienced significant carbonate buffering becoming only slightly acidic (pH 6-7), but with significant loss of inorganic carbon. The mine waters had low dissolved oxygen (6-25 %) and high dissolved iron (2 to 65 mg l-1) and manganese (0.5 to 5 mg l-1) concentrations. Dissolved greenhouse gases from abandoned mines were estimated as 0.27 +0.31-0.18% of Scotland's global warming potential. This novel work has contributed information about the sources and controls of greenhouse gas fluxes in mine waters and identified the need to quantify and report this emissions term.

Practical Guide to Measuring Wetland Carbon Pools and Fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13157-023-01722-2.

Methane in West Siberia terrestrial seeps: Origin, transport, and metabolic pathways of production

The expansive plains of West Siberia contain globally significant carbon stocks, with Earth's most extensive peatland complex overlying the world's largest-known hydrocarbon basin. Numerous terrestrial methane seeps have recently been discovered on this landscape, located along the floodplains of the Ob and Irtysh Rivers in hotspots covering more than 2500 km2 . We articulated three hypotheses to explain the origin and migration pathways of methane within these seeps: (H1) uplift of Cretaceous-aged methane from deep petroleum reservoirs along faults and fractures, (H2) release of Oligocene-aged methane capped or trapped by degrading permafrost, and (H3) horizontal migration of Holocene-aged methane from surrounding peatlands. We tested these hypotheses using a range of geochemical tools on gas and water samples extracted from seeps, peatlands, and aquifers across the 120,000 km2 study area. Seep-gas composition, radiocarbon age, and stable isotope fingerprints favor the peatland hypothesis of seep-methane origin (H3). Organic matter in raised bogs is the primary source of seep methane, but observed variability in stable isotope composition and concentration suggest production in two divergent biogeochemical settings that support distinct metabolic pathways of methanogenesis. Comparison of these parameters in raised bogs and seeps indicates that the first is bogs, via CO2 reduction methanogenesis. The second setting is likely groundwater, where dissolved organic carbon from bogs is degraded via chemolithotrophic acetogenesis followed by acetate fermentation methanogenesis. Our findings highlight the importance of methane lateral migration in West Siberia's bog-dominated landscapes via intimate groundwater connections. The same phenomenon could occur in similar landscapes across the boreal-taiga biome, thereby making groundwater-fed rivers and springs potent methane sources.

Higher Food Yields and Lower Greenhouse Gas Emissions from Aquaculture Ponds with High-Stalk Rice Planted

Aquaculture ponds are an important artificial aquatic system for global food fish production but also are a hot spot of greenhouse gas (GHG) emissions. The GHG mitigation strategy and the underlying mechanism for aquaculture ponds are still poorly understood. In this study, we conducted a 2 year field experiment to determine the effects of planting high-stalk rice (an artificially bred emergent plant for ponds) on GHG emissions from aquaculture ponds. Our results showed that planting high-stalk rice reduced CH4 emission by 64.4% and N2O emission by 76.2% over 2 years. Planting high-stalk rice significantly increased the content of O2 and the abundance of pmoA in the sediment, thus prompting CH4 oxidation in the ponds. The reduction of N2O emission from ponds was attributed to the decreased inorganic nitrogen, amoA-B and nirS in the sediment induced by rice. Furthermore, high-stalk rice culture in the pond increased shrimp yields and gained rice yields, resulting in a significant reduction of yield-scaled global warming potential. Our findings suggest that breeding appropriate emergent aquatic plants is a potential pathway to mitigate GHG emission from aquaculture ponds with more food yields and economic benefits.

Variations in the archaeal community and associated methanogenesis in peat profiles of three typical peatland types in China

BACKGROUND

Peatlands contain about 500 Pg of carbon worldwide and play a dual role as both a carbon sink and an important methane (CH₄) source, thereby potentially influencing climate change. However, systematic studies on peat properties, microorganisms, methanogenesis, and their interrelations in peatlands remain limited, especially in China. Therefore, the present study aims to investigate the physicochemical properties, archaeal community, and predominant methanogenesis pathways in three typical peatlands in China, namely Hani (H), Taishanmiao (T), and Ruokeba (R) peatlands, and quantitively determine their CH₄ production potentials.

RESULTS

These peatlands exhibited high water content (WC) and total carbon content (TC), as well as low pH values. In addition, R exhibited a lower dissolved organic carbon concentration (DOC), as well as higher total iron content (TFe) and pH values compared to those observed in T. There were also clear differences in the archaeal community between the three peatlands, especially in the deep peat layers. The average relative abundance of the total methanogens ranged from 10 to 12%, of which Methanosarcinales and Methanomicrobiales were the most abundant in peat samples (8%). In contrast, Methanobacteriales were mainly distributed in the upper peat layer (0-40 cm). Besides methanogens, Marine Benthic Group D/Deep-Sea Hydrothermal Vent Euryarchaeotic Group 1 (MBG-D/DHVEG-1), Nitrosotaleales, and several other orders of Bathyarchaeota also exhibited high relative abundances, especially in T. This finding might be due to the unique geological conditions, suggesting high archaeal diversity in peatlands. In addition, the highest and lowest CH₄ production potentials were 2.38 and 0.22 μg g^-1 d^-1 in H and R, respectively. The distributions of the dominant methanogens were consistent with the respective methanogenesis pathways in the three peatlands. The pH, DOC, and WC were strongly correlated with CH₄ production potentials. However, no relationship was found between CH₄ production potential and methanogens, suggesting that CH₄ production in peatlands may not be controlled by the relative abundance of methanogens.

CONCLUSIONS

The results of the present study provide further insights into CH₄ production in peatlands in China, highlighting the importance of the archaeal community and peat physicochemical properties for studies on methanogenesis in distinct types of peatlands.

Vallisneria natans decreased CH4 fluxes in wetlands: Interactions among plant physiological status, nutrients and epiphytic bacterial community

Submerged macrophytes provide niches for epiphytic microbes (including aerobic methanotrophs) growth. However, little is known about the impacts of submerged macrophytes growth status and nutrients loadings on methanotroph community and methane release in wetlands. In the present study, methane fluxes, bacterial and methanotroph community in epiphytic biofilm, and environmental parameters were investigated during Vallisneria natans senescence in wetlands under low (VnL) and high (VnH) nutrients for seven weeks. Relative conductivity and concentration of H₂O₂, total chlorophyll and malondialdehyde were higher in leaves of V. natans in VnH than VnL at the same sampling time. Nutrients loading increased methane fluxes in treatments with or without (Control) macrophytes, while healthy V. natans plants reduced the methane flux and nutrients concentration in water columns. CH₄ fluxes were positively correlated to temperature and COD (p < 0.05). Methane oxidation rates were 3.04-31.68 μmol methane mg^-1 fresh weight of V. natans leaves - epiphytic biofilm within 1 h. Proteobacteria, Cyanobacteria, Bacteroidetes, Verrucomicrobia, Planctomycetes, Actinobacteria and Acidobacteria were dominant phylum in all epiphytic biofilms. The mean abundances of pmoA/16S rRNA were higher in VnL than VnH. According to Illumina sequencing results of pmoA gene, γ-proteobacteria and α-proteobacteria were the dominant methanotroph class in epiphytic biofilm from VnH and VnL, respectively. Among seven detected methanotrophic genera, Methylomonas was significantly higher in VnH than VnL. Network analysis revealed that there were much closer relationships between the environmental parameters and epiphytic bacterial community in VnH than in VnL. COD and MDA were negatively correlated with Methyloglobulus, Methylosarcina, Methylobacter and Methylocystis, but positively correlated with Methylomonas and Methylosinus. This study highlights that methanotrophs in epiphytic biofilm play important roles in methane-oxidizing, which can be affected by plant physiological status and environmental parameters.

Metagenomics Unveils Microbial Diversity and Their Biogeochemical Roles in Water and Sediment of Thermokarst Lakes in the Yellow River Source Area

Thermokarst lakes have long been recognized as biogeochemical hotspots, especially as sources of greenhouse gases. On the Qinghai-Tibet Plateau, thermokarst lakes are experiencing extensive changes due to faster warming. For a deep understanding of internal lake biogeochemical processes, we applied metagenomic analyses to investigate the microbial diversity and their biogeochemical roles in sediment and water of thermokarst lakes in the Yellow River Source Area (YRSA). Sediment microbial communities (SMCs) had lower species and gene richness than water microbial communities (WMCs). Bacteria were the most abundant component in both SMCs and WMCs with significantly different abundant genera. The functional analyses showed that both SMCs and WMCs had low potential in methanogenesis but strong in aerobic respiration, nitrogen assimilation, exopolyphosphatase, glycerophosphodiester phosphodiesterases, and polyphosphate kinase. Moreover, SMCs were enriched in genes involved in anaerobic carbon fixation, aerobic carbon fixation, fermentation, most nitrogen metabolism pathways, dissimilatory sulfate reduction, sulfide oxidation, polysulfide reduction, 2-phosphonopropionate transporter, and phosphate regulation. WMCs were enriched in genes involved in assimilatory sulfate reduction, sulfur mineralization, phosphonoacetate hydrolase, and phosphonate transport. Functional potentials suggest the differences of greenhouse gas emission, nutrient cycling, and living strategies between SMCs and WMCs. This study provides insight into the main biogeochemical processes and their properties in thermokarst lakes in YRSA, improving our understanding of the roles and fates of these lakes in a warming world.

Restoration effects of submerged macrophytes on methane production and oxidation potential of lake sediments

The restoration of submerged macrophytes is an important step in lake ecosystem restoration, during which artificially assisted measures have been widely used for macrophyte recolonization. Compared with natural restoration, the impact of artificially assisted methods on methane (CH₄) production and oxidation of lake sediments remains unclear. Therefore, after the restoration of submerged macrophytes in some parts of West Lake (Hangzhou, China), sediment samples from West Lake were collected according to restoration methods and plant coverage. The CH₄ production potential, oxidation potential, and microbial community structure in the sediment were discussed through whole-lake sample analysis and resampling verification from typical lake areas. From the analysis of the whole lake, the average daily CH₄ production potential (ADP) of artificially restored lake areas (0.12 μg g^-1 d^-1) was significantly lower than that of the naturally restored lake areas (0.52 μg g^-1 d^-1). From the resampling analysis of typical lake areas, the ADP of naturally restored lake areas was 1.8 times that of artificially restored lake areas (P < 0.01). Although there was no significant difference in the CH₄ oxidation potential between the two restoration methods, the presence of submerged macrophytes significantly increased the abundance of the dominant methanotroph Methylocaldum in the sediment, and the rate of increase in the abundance of the dominant methanotroph Methylosinus was significantly higher in artificially assisted restoration than in natural restoration. This study revealed that the artificially assisted restoration of submerged macrophytes reduced the potential for CH₄ production and increased the abundance of dominant methanotrophs in the lake sediment, which would be beneficial for the reduction of CH₄ emissions during lake ecological restoration and environmental management.

Large increases in methane emissions expected from North America's largest wetland complex

Natural methane (CH₄) emissions from aquatic ecosystems may rise because of human-induced climate warming, although the magnitude of increase is highly uncertain. Using an exceptionally large CH₄ flux dataset (~19,000 chamber measurements) and remotely sensed information, we modeled plot- and landscape-scale wetland CH₄ emissions from the Prairie Pothole Region (PPR), North America's largest wetland complex. Plot-scale CH₄ emissions were driven by hydrology, temperature, vegetation, and wetland size. Historically, landscape-scale PPR wetland CH₄ emissions were largely dependent on total wetland extent. However, regardless of future wetland extent, PPR CH₄ emissions are predicted to increase by two- or threefold by 2100 under moderate or severe warming scenarios, respectively. Our findings suggest that international efforts to decrease atmospheric CH₄ concentrations should jointly account for anthropogenic and natural emissions to maintain climate mitigation targets to the end of the century.

The effect of methane and methanol on the terrestrial ammonia-oxidizing archaeon 'Candidatus Nitrosocosmicus franklandus C13'

The ammonia monooxygenase (AMO) is a key enzyme in ammonia-oxidizing archaea, which are abundant and ubiquitous in soil environments. The AMO belongs to the copper-containing membrane monooxygenase (CuMMO) enzyme superfamily, which also contains particulate methane monooxygenase (pMMO). Enzymes in the CuMMO superfamily are promiscuous, which results in co-oxidation of alternative substrates. The phylogenetic and structural similarity between the pMMO and the archaeal AMO is well-established, but there is surprisingly little information on the influence of methane and methanol on the archaeal AMO and terrestrial nitrification. The aim of this study was to examine the effects of methane and methanol on the soil ammonia-oxidizing archaeon 'Candidatus Nitrosocosmicus franklandus C13'. We demonstrate that both methane and methanol are competitive inhibitors of the archaeal AMO. The inhibition constants (K_i ) for methane and methanol were 2.2 and 20 μM, respectively, concentrations which are environmentally relevant and orders of magnitude lower than those previously reported for ammonia-oxidizing bacteria. Furthermore, we demonstrate that a specific suite of proteins is upregulated and downregulated in 'Ca. Nitrosocosmicus franklandus C13' in the presence of methane or methanol, which provides a foundation for future studies into metabolism of one-carbon (C1) compounds in ammonia-oxidizing archaea.

Response of the common reed (Phragmites australis) to nutrient enrichment depends on the growth stage and degree of enrichment: A mesocosm experiment

Human-induced nutrient enrichment is a major stressor in aquatic ecosystems that has resulted in the alteration of ecosystem structures and functions. However, to date, relatively few studies have explored the temporal dynamics of reed biomass and morphological and biochemical traits under different nutrient levels, as well as the phenological pattern. Based on a mesocosm experiment, we monitored the aboveground and underground biomass of reed at the different plant growth stages, along with plant height, ramet and leaf number, leaf length and width, and carbohydrate and nutrient contents in different organs. We found that the significantly different ratio of aboveground to underground biomass was only observed at the late flowering stage between the slight enrichment (S-E) and heavy enrichment (H-E) groups. The start of the fast-growth phase of the aboveground part and underground part was delayed in the higher nutrient enrichment groups. The length of the fast-growth phase of the aboveground part was the same in the medium enrichment (M-E) and H-E groups and longer than that in the S-E group. For the underground part, the longest fast-growth phase was found in the S-E group (105 days), followed by the H-E and M-E groups (46 and 41 days, respectively). As the nutrient level increased, both increased and decreased values were observed for the 29 monitored morphological and biochemical traits, and the magnitude changed with the different growth stages. Moreover, different degrees of nutrient enrichment could differentially enhance or weaken the relationships among the groups between total biomass and the integrated morphological trait, between structural carbohydrate (SC) and total nitrogen (TN) contents, between total organic carbon (TOC) and TN, between total phosphorus (TP) contents, between TOC and SC contents. Our findings highlight a crucial contribution of ambient nutrient supply to temporal variation in plant biomass and phenological, morphological and biochemical traits.

Effects and oxygen-regulated mechanisms of water management on cadmium (Cd) accumulation in rice (Oryza sativa)

Irrigation has been considered an effective approach for decreasing cadmium (Cd) uptake and accumulation in rice (Oryza sativa), but increasing evidence shows that the effects of different water management strategies on Cd accumulation in rice are contradictory in different studies, and the detailed regulatory mechanisms remain unconfirmed. Most previous studies have shown that irrigation regulates Cd accumulation in rice mainly by affecting Cd bioavailability, pH and redox potential (Eh) in soil, and few reports have focused on the function of oxygen (O₂) in regulating the physiological mechanisms of rice on Cd tolerance or accumulation. Here, we concluded that irrigation affects Cd bioavailability, pH and Eh in soil mainly by regulating O₂ content. In addition, recent studies have also shown that irrigation-regulated O₂ also affects Cd accumulation in rice by affecting iron plaque (IP), the radial oxygen loss (ROL) barrier, the cell wall and mass flow in rice roots. All these results indicate that O₂ is the key factor in irrigation-regulated Cd accumulation in rice, and dramatic result variations from different irrigation experiments are due to the different rhizosphere O₂ conditions. This review will help clarify the effects and regulatory mechanisms of irrigation on Cd accumulation in rice and reveal the roles of O₂ in this process.

Large increase in CH4 emission following conversion of coastal marsh to aquaculture ponds caused by changing gas transport pathways

Methane emissions from aquatic ecosystems play an important role in global carbon cycle and climate change. Reclamation of coastal wetlands for aquaculture use has been shown to have opposite effects on sediment CH₄ production potential and CH₄ emission flux, but the underlying mechanism remained unclear. In this study, we compared sediment properties, CH₄ production potential, emission flux, and CH₄ transport pathways between a brackish marsh and the nearby reclaimed aquaculture ponds in the Min River Estuary in southeastern China. Despite that the sediment CH₄ production potential in the ponds was significantly lower than the marsh, CH₄ emission flux in the ponds (17.4 ± 2.7 mg m^-2 h^-1) was 11.9 times higher than the marsh (1.3 ±  0.2 mg m^-2 h^-1). Plant-mediated transport accounted for 75% of the total CH₄ emission in the marsh, whereas ebullition accounted for 95% of the total CH₄ emission in the ponds. CH₄ emission fluxes in both habitat types were highest in the summer. These results suggest that the increase in CH₄ emission following the conversion of brackish marsh to aquaculture ponds was not caused by increased sediment CH₄ production, but rather by eliminating rhizospheric oxidation and shifting the major transport pathway to ebullition, allowing sediment CH₄ to bypass oxidative loss. This study improves our understanding of the impacts of modification of coastal wetlands on greenhouse gas dynamics.

Sulfur and methane oxidation by a single microorganism

Wetlands are the major natural source of methane, an important greenhouse gas. The sulfur and methane cycles in wetlands are linked—e.g., a strong sulfur cycle can inhibit methanogenesis. Although there has historically been a clear distinction drawn between methane and sulfur oxidizers, here, we isolated a methanotroph that also performed respiratory oxidization of sulfur compounds. We experimentally demonstrated that thiotrophy and methanotrophy are metabolically compatible, and both metabolisms could be expressed simultaneously in a single microorganism. These findings suggest that mixotrophic methane/sulfur-oxidizing bacteria are a previously overlooked component of environmental methane and sulfur cycles. This creates a framework for a better understanding of these redox cycles in natural and engineered wetlands.

Natural and anthropogenic wetlands are major sources of the atmospheric greenhouse gas methane. Methane emissions from wetlands are mitigated by methanotrophic bacteria at the oxic–anoxic interface, a zone of intense redox cycling of carbon, sulfur, and nitrogen compounds. Here, we report on the isolation of an aerobic methanotrophic bacterium, ‘Methylovirgula thiovorans' strain HY1, which possesses metabolic capabilities never before found in any methanotroph. Most notably, strain HY1 is the first bacterium shown to aerobically oxidize both methane and reduced sulfur compounds for growth. Genomic and proteomic analyses showed that soluble methane monooxygenase and XoxF-type alcohol dehydrogenases are responsible for methane and methanol oxidation, respectively. Various pathways for respiratory sulfur oxidation were present, including the Sox–rDsr pathway and the S₄I system. Strain HY1 employed the Calvin–Benson–Bassham cycle for CO₂ fixation during chemolithoautotrophic growth on reduced sulfur compounds. Proteomic and microrespirometry analyses showed that the metabolic pathways for methane and thiosulfate oxidation were induced in the presence of the respective substrates. Methane and thiosulfate could therefore be independently or simultaneously oxidized. The discovery of this versatile bacterium demonstrates that methanotrophy and thiotrophy are compatible in a single microorganism and underpins the intimate interactions of methane and sulfur cycles in oxic–anoxic interface environments.

Can Restoration of Freshwater Mineral Soil Wetlands Deliver Nature-Based Climate Solutions to Agricultural Landscapes?

This study advances scientific understanding of the magnitude of carbon sequestration that could be achieved through conservation (securing existing carbon stocks) and restoration (creating new carbon stocks) of freshwater mineral soil wetlands on agricultural landscapes. Within an agricultural landscape in southern Ontario (Canada), 65,261 wetlands comprising 63,135 ha were lost. Of these, 6,899 wetlands comprising 5,198 ha were “easy-to-restore” wetlands, defined as wetlands that were small (&lt;0.5 ha), with no hydrological inflow or outflow, and that were drained by a drainage ditch and could be restored by plugging the drainage ditch. Within these easy-to-restore wetlands, a chronosequence of wetlands that covered a range of restoration ages [i.e., drained (0 years), 15 years, 25 years, 40 years, and intact marshes] was established to capture potential changes in rates of sedimentation and organic carbon (OC) sequestration with restoration age. Three sediment cores were collected at the center of the open-water portion of the wetland and segmented in the field. In the lab, each individual segment from each core was dried, sieved through a 2-mm mesh, weighed and analyzed for 137Cs and 210Pb radioisotopes and OC. OC stocks (35.60 Mg ha–1) and OC sequestration rates (0.89 Mg C ha–2 yr–1) in wetlands restored for 40 years were comparable to if not marginally larger than intact wetlands, suggesting that restoration promotes OC sequestration but that an initial recovery phase of up to 25 years or more is needed before returning to a pre-drainage equilibrium. An economic analysis to compare the costs and benefits of wetland conservation and restoration was then conducted. The benefit-cost analysis revealed that the financial benefits of carbon sequestration are greater than the financial costs over a 30-year time horizon for retaining wetlands but not for restoring wetlands. The breakeven costs such that wetland restoration is economically feasible based on current carbon price projections is estimated to be $17,173 CAD ha–1 over the 30-year time horizon; any wetland restoration project that costs this amount or less could be justified on economic grounds based solely on the carbon benefits. This study’s findings indicate that wetlands are important nature-based climate solutions, but that incentivizing their use through a carbon market will require either scientific innovations to reduce restoration costs or increase carbon sequestration rates, or stacking carbon benefits with other ecosystem service benefits into a comprehensive market for nature-based climate solutions.

Methanotrophs Contribute to Nitrogen Fixation in Emergent Macrophytes

Root-associated aerobic methanotroph plays an important role in reducing methane emissions from wetlands. In this study, we examined the activity of methane-dependent nitrogen fixation and active nitrogen-fixing bacterial communities on the roots of Typha angustifolia and Scirpus triqueter using a 15N-N2 feeding experiment and a cDNA-based clone library sequence of the nifH gene, respectively. A 15N-N2 feeding experiment showed that the N2 fixation rate of S. triqueter (1.74 μmol h-1 g-1 dry weight) was significantly higther than that of T. angustifolia (0.48 μmol h-1 g-1 dry weight). The presence of CH4 significantly increased the incorporation of 15N-labeled N2 into the roots of both plants, and the rate of CH4-dependent N2 fixation of S. triqueter (5.6 μmol h-1 g-1 dry weight) was fivefold higher than that of T. angustifolia (0.94 μmol h-1 g-1 dry weight). The active root-associated diazotrophic communities differed between the plant species. Diazotrophic Methylosinus of the Methylocystaceae was dominant in S. triqueter, while Rhizobium of the Rhizobiaceae was dominant in T. angustifolia. However, there were no significant differences in the copy numbers of nifH between plant species. These results suggest that N2 fixation was enhanced by the oxidation of CH4 in the roots of macrophytes grown in natural wetlands and that root-associated Methylocystacea, including Methylosinus, contribute to CH4 oxidation-dependent N2 fixation.

Methanogen Productivity and Microbial Community Composition Varies With Iron Oxide Mineralogy

Quantifying the flux of methane from terrestrial environments remains challenging, owing to considerable spatial and temporal variability in emissions. Amongst a myriad of factors, variation in the composition of electron acceptors, including metal (oxyhydr)oxides, may impart controls on methane emission. The purpose of this research is to understand how iron (oxyhydr)oxide minerals with varied physicochemical properties influence microbial methane production and subsequent microbial community development. Incubation experiments, using lake sediment as an inoculum and acetate as a carbon source, were used to understand the influence of one poorly crystalline iron oxide mineral, ferrihydrite, and two well-crystalline minerals, hematite and goethite, on methane production. Iron speciation, headspace methane, and 16S-rRNA sequencing microbial community data were measured over time. Substantial iron reduction only occurred in the presence of ferrihydrite while hematite and goethite had little effect on methane production throughout the incubations. In ferrihydrite experiments the time taken to reach the maximum methane production rate was slower than under other conditions, but methane production, eventually occurred in the presence of ferrihydrite. We suggest that this is due to ferrihydrite transformation into more stable minerals like magnetite and goethite or surface passivation by Fe(II). While all experimental conditions enriched for Methanosarcina, only the presence of ferrihydrite enriched for iron reducing bacteria Geobacter. Additionally, the presence of ferrihydrite continued to influence microbial community development after the onset of methanogenesis, with the dissimilarity between communities growing in ferrihydrite compared to no-Fe-added controls increasing over time. This work improves our understanding of how the presence of different iron oxides influences microbial community composition and methane production in soils and sediments.

Phenology is the dominant control of methane emissions in a tropical non-forested wetland

Tropical wetlands are a significant source of atmospheric methane (CH₄), but their importance to the global CH₄ budget is uncertain due to a paucity of direct observations. Net wetland emissions result from complex interactions and co-variation between microbial production and oxidation in the soil, and transport to the atmosphere. Here we show that phenology is the overarching control of net CH₄ emissions to the atmosphere from a permanent, vegetated tropical swamp in the Okavango Delta, Botswana, and we find that vegetative processes modulate net CH₄ emissions at sub-daily to inter-annual timescales. Without considering the role played by papyrus on regulating the efflux of CH₄ to the atmosphere, the annual budget for the entire Okavango Delta, would be under- or over-estimated by a factor of two. Our measurements demonstrate the importance of including vegetative processes such as phenological cycles into wetlands emission budgets of CH₄.

Tropical wetlands are a significant but understudied source of methane. Here, methane emissions were measured over three years in a perennial tropical swamp in the Okavango Delta, Botswana, finding phenology was the overarching control of emissions.

Metagenomic insights into the effects of submerged plants on functional potential of microbial communities in wetland sediments

Submerged plants in wetlands play important roles as ecosystem engineers to improve self-purification and promote elemental cycling. However, their effects on the functional capacity of microbial communities in wetland sediments remain poorly understood. Here, we provide detailed metagenomic insights into the biogeochemical potential of microbial communities in wetland sediments with and without submerged plants (i.e., Vallisneria natans). A large number of functional genes involved in carbon (C), nitrogen (N) and sulfur (S) cycling were detected in the wetland sediments. However, most functional genes showed higher abundance in sediments with submerged plants than in those without plants. Based on the comparison of annotated functional genes in the N and S cycling databases (i.e., NCycDB and SCycDB), we found that genes involved in nitrogen fixation (e.g., nifD/H/K/W), assimilatory nitrate reduction (e.g., nasA and nirA), denitrification (e.g., nirK/S and nosZ), assimilatory sulfate reduction (e.g., cysD/H/J/N/Q and sir), and sulfur oxidation (e.g., glpE, soeA, sqr and sseA) were significantly higher (corrected p < 0.05) in vegetated vs. unvegetated sediments. This could be mainly driven by environmental factors including total phosphorus, total nitrogen, and C:N ratio. The binning of metagenomes further revealed that some archaeal taxa could have the potential of methane metabolism including hydrogenotrophic, acetoclastic, and methylotrophic methanogenesis, which are crucial to the wetland methane budget and carbon cycling. This study opens a new avenue for linking submerged plants with microbial functions, and has further implications for understanding global carbon, nitrogen and sulfur cycling in wetland ecosystems.

Supplementary Information

The online version contains supplementary material available at 10.1007/s42995-021-00100-3.

Improved wetland soil organic carbon stocks of the conterminous U.S. through data harmonization

Wetland soil stocks are important global repositories of carbon (C) but are difficult to quantify and model due to varying sampling protocols, and geomorphic/spatio-temporal discontinuity. Merging scales of soil-survey spatial extents with wetland-specific point-based data offers an explicit, empirical and updatable improvement for regional and continental scale soil C stock assessments. Agency-collected and community-contributed soil datasets were compared for representativeness and bias, with the goal of producing a harmonized national map of wetland soil C stocks with error quantification for wetland areas of the conterminous United States (CONUS) identified by the USGS National Landcover Change Dataset. This allowed an empirical predictive model of SOC density to be applied across the entire CONUS using relational %OC distribution alone. A broken-stick quantile-regression model identified %OC with its relatively high analytical confidence as a key predictor of SOC density in soil segments; soils less than 6% OC (hereafter, mineral wetland soils, 85% of the dataset) had a strong linear relationship of %OC to SOC density (RMSE = 0.0059, ~4% mean RMSE) and soils greater than 6% OC (organic wetland soils, 15% of the dataset) had virtually no predictive relationship of %OC to SOC density (RMSE = 0.0348 g C cm^-3, ~56% mean RMSE). Disaggregation by vegetation type, or region did not alter the breakpoint significantly (6% OC) nor improve model accuracies for inland and tidal wetlands. Similarly, SOC stocks in tidal wetlands were related to %OC, but without a mappable product for disaggregation to improve accuracy by soil class, region or depth. Our layered, harmonized CONUS wetland soil maps revised wetland SOC stock estimates downward by 24% (9.5 vs. 12.5Pg C) with the overestimation being entirely an issue of inland, organic wetland soils, (35% lower than SSURGO-derived SOC stocks). Further, SSURGO underestimated soil carbon stocks at depth, as modeled wetland SOC stocks for organic-rich soils showed significant preservation downcore in the NWCA dataset (<3% loss between 0-30 cm and 30-100 cm depths) in contrast to mineral-rich soils (37% downcore stock loss). Future CONUS wetland soil C assessments will benefit from focused attention on improved organic wetland soil measurements, land history, and spatial representativeness.

Repeated large-scale mechanical treatment of invasive Typha under increasing water levels promotes floating mat formation and wetland methane emissions

Invasive species management typically aims to promote diversity and wildlife habitat, but little is known about how management techniques affect wetland carbon (C) dynamics. Since wetland C uptake is largely influenced by water levels and highly productive plants, the interplay of hydrologic extremes and invasive species is fundamental to understanding and managing these ecosystems. During a period of rapid water level rise in the Laurentian Great Lakes, we tested how mechanical treatment of invasive plant Typha × glauca shifts plant-mediated wetland C metrics. From 2015 to 2017, we implemented large-scale treatment plots (0.36-ha) of harvest (i.e., cut above water surface, removed biomass twice a season), crush (i.e., ran over biomass once mid-season with a tracked vehicle), and Typha-dominated controls. Treated Typha regrew with approximately half as much biomass as unmanipulated controls each year, and Typha production in control stands increased from 500 to 1500 g-dry mass m^-2 yr^-1 with rising water levels (~10 to 75 cm) across five years. Harvested stands had total in-situ methane (CH₄) flux rates twice as high as in controls, and this increase was likely via transport through cut stems because crushing did not change total CH₄ flux. In 2018, one year after final treatment implementation, crushed stands had greater surface water diffusive CH₄ flux rates than controls (measured using dissolved gas in water), likely due to anaerobic decomposition of flattened biomass. Legacy effects of treatments were evident in 2019; floating Typha mats were present only in harvested and crushed stands, with higher frequency in deeper water and a positive correlation with surface water diffusive CH₄ flux. Our study demonstrates that two mechanical treatments have differential effects on Typha structure and consequent wetland CH₄ emissions, suggesting that C-based responses and multi-year monitoring in variable water conditions are necessary to accurately assess how management impacts ecological function.

Identifying dominant environmental predictors of freshwater wetland methane fluxes across diurnal to seasonal time scales

While wetlands are the largest natural source of methane (CH₄ ) to the atmosphere, they represent a large source of uncertainty in the global CH₄ budget due to the complex biogeochemical controls on CH₄ dynamics. Here we present, to our knowledge, the first multi-site synthesis of how predictors of CH₄ fluxes (FCH4) in freshwater wetlands vary across wetland types at diel, multiday (synoptic), and seasonal time scales. We used several statistical approaches (correlation analysis, generalized additive modeling, mutual information, and random forests) in a wavelet-based multi-resolution framework to assess the importance of environmental predictors, nonlinearities and lags on FCH4 across 23 eddy covariance sites. Seasonally, soil and air temperature were dominant predictors of FCH4 at sites with smaller seasonal variation in water table depth (WTD). In contrast, WTD was the dominant predictor for wetlands with smaller variations in temperature (e.g., seasonal tropical/subtropical wetlands). Changes in seasonal FCH4 lagged fluctuations in WTD by ~17 ± 11 days, and lagged air and soil temperature by median values of 8 ± 16 and 5 ± 15 days, respectively. Temperature and WTD were also dominant predictors at the multiday scale. Atmospheric pressure (PA) was another important multiday scale predictor for peat-dominated sites, with drops in PA coinciding with synchronous releases of CH₄ . At the diel scale, synchronous relationships with latent heat flux and vapor pressure deficit suggest that physical processes controlling evaporation and boundary layer mixing exert similar controls on CH₄ volatilization, and suggest the influence of pressurized ventilation in aerenchymatous vegetation. In addition, 1- to 4-h lagged relationships with ecosystem photosynthesis indicate recent carbon substrates, such as root exudates, may also control FCH4. By addressing issues of scale, asynchrony, and nonlinearity, this work improves understanding of the predictors and timing of wetland FCH4 that can inform future studies and models, and help constrain wetland CH₄ emissions.

The impact of super-typhoon Mangkhut on sediment nutrient density and fluxes in a mangrove forest in Hong Kong

Cyclone disturbance results in mangrove foliage loss, tree mortality and other changes in ecosystem processes. However, the impact of cyclones on mangrove sediment nutrient density, sediment-air CO₂ and CH₄ fluxes and their isotopes remains largely unknown. Super-typhoon Mangkhut (maximum gust 256 km h^-1) hit Hong Kong in September 2018. We investigated the influence of the cyclone by comparing pre- and post-cyclone sediment carbon cycling processes as well as nitrogen density during an 8-month period in a mangrove forest at Ting Kok, Hong Kong. Time and/or nitrogen density are the dominant drivers of the variation of dark sediment-air CO₂ fluxes (R_d) and sediment nutrient density. Significant changes in R_d and their δ¹³CO₂ values, sediment organic carbon density (SOC) and nitrogen density (SON) occurred after the cyclone. R_d were highest one month after the cyclone (0.05 ± 0.01 mmol m^-2 min^-1) and lowest before the cyclone (8.32 ± 2.84 μmol m^-2 min^-1). δ¹³CO₂ of pre-cyclone R_d (-18.2 ± 1.7‰) was significantly higher than that of all post-cyclone fluxes (-22.9 ± 1.5‰ to -23.6 ± 1.8‰). Both SOC and SON were highest one month after the cyclone (23.05 ± 1.92 kg C m^-3, 2.42 ± 0.11 kg N m^-3, 20-40 cm). A significant positive relationship exists between R_d and SON. Sediment-air CH₄ fluxes did not show significant changes over time but along the sea-land gradient (0.28 ± 0.21 to 0.61 ± 0.22 μmol m^-2 min^-1). Cyclone disturbance results in the pulse input of litter, which may explain the significant increase in post-cyclone R_d and lower δ¹³CO₂ of R_d. With anticipated climate change-driven effects on cyclone occurrence and intensity, our data underscores the significance of incorporating the influence of cyclone disturbance in constraining the global nutrient budgets in mangroves.

Microbial Communities in Methane Cycle: Modern Molecular Methods Gain Insights into Their Global Ecology

The role of methane as a greenhouse gas in the concept of global climate changes is well known. Methanogens and methanotrophs are two microbial groups which contribute to the biogeochemical methane cycle in soil, so that the total emission of CH4 is the balance between its production and oxidation by microbial communities. Traditional identification techniques, such as selective enrichment and pure-culture isolation, have been used for a long time to study diversity of methanogens and methanotrophs. However, these techniques are characterized by significant limitations, since only a relatively small fraction of the microbial community could be cultured. Modern molecular methods for quantitative analysis of the microbial community such as real-time PCR (Polymerase chain reaction), DNA fingerprints and methods based on high-throughput sequencing together with different “omics” techniques overcome the limitations imposed by culture-dependent approaches and provide new insights into the diversity and ecology of microbial communities in the methane cycle. Here, we review available knowledge concerning the abundances, composition, and activity of methanogenic and methanotrophic communities in a wide range of natural and anthropogenic environments. We suggest that incorporation of microbial data could fill the existing microbiological gaps in methane flux modeling, and significantly increase the predictive power of models for different environments.

Filamentous green algae Spirogyra regulates methane emissions from eutrophic rivers

Excessive growth of filamentous green algae in rivers has attracted much attention due to their functional importance to primary production and carbon cycling. However, comprehensive knowledge of how filamentous green algae affect carbon cycling, especially the CH₄ emissions from river ecosystems, remains limited. In this study, incubation experiments were conducted to examine the factors regulating CH₄ emissions from a eutrophic river with dense growth of filamentous green algae Spirogyra through combinations of biogeochemical, molecular biological, and stable carbon isotope analyses. Results showed that although water dissolved oxygen (DO) in the algae+sediment (A+S) incubation groups increased up to 19 mg L^-1, average CH₄ flux of the groups was 13.09 μmol m^-2 day^-1, nearly up to two times higher than that from sediments without algae (S groups). The significant increase of sediment CH₄ oxidation potential and methanotroph abundances identified the enhancing sediment CH₄ oxidation during Spirogyra bloom. However, the increased water CH₄ concentration was consistent with depleted water [Formula: see text] and decreased apparent fractionation factor (α_app), suggesting the important contribution of Spirogyra to the oxic water CH₄ production. It can thus be concluded that high DO concentration during the algal bloom promoted the CH₄ consumption by enhancing sediment CH₄ oxidation, while algal-linked oxic water CH₄ production as a major component of water CH₄ promoted the CH₄ emissions from the river. Our study highlights the regulation of Spirogyra in aquatic CH₄ fluxes and will help to estimate accurately CH₄ emissions from eutrophic rivers with dense blooms of filamentous green algae. Graphical abstract.

Methane Levels of a River Network in Wuxi City, China and Response to Water Governance

The majority of rivers are a CH4 source that accounts for an important proportion of annual global emissions. However, CH4 evasion from urban river networks has received disproportionately less attention than their contribution. The effect of water governance on water quality and CH4 emission in urban areas remains unclear. Water quality, CH4 concentrations, and fluxes from a river network in Binhu District, Wuxi City, and their response to water governance were analyzed in this study. CH4 concentrations in the investigated rivers ranged from 0.05 μmol L−1 to 16.37 μmol L−1 (2.47 ± 4.5 μmol L−1, medium 0.23 μmol L−1), and CH4 diffusive fluxes were 75.55 ± 171.78 μmol m−2 h−1 with a medium of 6.50 μmol m−2 h−1. CH4 concentration showed a significant correlation with water quality parameters, especially for NH3–N (r = 0.84, p < 0.001). Significant differences in water quality and CH4 levels were found between sites that had conducted water management and those that continued to exhibit poor water quality. Our analysis showed that rivers under water governance have a positive tendency toward water ecological restoration, and a significant decrease in CH4 efflux to the air can be achieved after extensive and intensified water governance.

The impact of occasional drought periods on vegetation spread and greenhouse gas exchange in rewetted fens

Peatland rewetting aims at stopping the emissions of carbon dioxide (CO₂) and establishing net carbon sinks. However, in times of global warming, restoration projects must increasingly deal with extreme events such as drought periods. Here, we evaluate the effect of the European summer drought 2018 on vegetation development and the exchange of methane (CH₄) and CO₂ in two rewetted minerotrophic fens (Hütelmoor—Hte and Zarnekow—Zrk) including potential carry-over effects in the post-drought year. Drought was a major stress factor for the established vegetation but also promoted the rapid spread of new vegetation, which will likely gain a lasting foothold in Zrk. Accordingly, drought increased not only respiratory CO₂ losses but also photosynthetic CO₂ uptake. Altogether, the drought reduced the net CO₂ sink in Hte, while it stopped the persistent net CO₂ emissions of Zrk. In addition, the drought reduced CH₄ emissions in both fens, though this became most apparent in the post-drought year and suggests a lasting shift towards non-methanogenic organic matter decomposition. Occasional droughts can be beneficial for the restoration of the peatland carbon sink function if the newly grown vegetation increases CO₂ sequestration in the long term. Nonetheless, care must be taken to prevent extensive peat decay.

This article is part of the theme issue ‘Impacts of the 2018 severe drought and heatwave in Europe: from site to continental scale'.

Patterns and environmental drivers of greenhouse gas fluxes in the coastal wetlands of China: A systematic review and synthesis

Coastal wetlands play an increasingly important role in regulating greenhouse gas (GHG) fluxes and thus affecting climate change. However, the overall magnitude, trend, and environmental drivers of GHG fluxes in these wetlands of China remain uncertain. Herein, we synthesized data from 70 publications involving 187 field observations to identify patterns and drivers of GHG fluxes across coastal wetlands in China. Average methane (CH₄), nitrous oxide (N₂O) fluxes, and carbon dioxide (CO₂) emissions (ecosystem respiration) across coastal wetlands were estimated as 2.20±0.31 mg·m^-2·h^-1, 16.44±2.96 μg·m^-2·h^-1, and 388.76±42.28 mg·m^-2·h^-1, respectively. GHG emissions varied with tidal inundation, where CH₄ and CO₂ emissions during tidal inundation were lower than during ebbing. CH₄ and CO₂ emissions from wetlands decreased linearly with increasing latitude, while N₂O did not. CH₄ fluxes were positively related to air temperature and aboveground biomass, and CO₂ emissions were positively related to soil organic carbon. N₂O fluxes were lower with increasing soil pH, and CH₄ and CO₂ emissions were greater with increasing soil moisture. Based on the results of sustained-flux global warming potential and sustained-flux global cooling potential models, our paper indicate that the fluxes of CH₄ and N₂O in coastal wetlands have a positive feedback to global warming, which is mainly driven by the CH₄ emission. Our synthesis improved understanding of the roles of coastal wetlands in the ecosystem C cycle under global change. We suggest that long-term field observations of GHG fluxes across a wider range of spatiotemporal scales are urgently required to improve the prediction accuracy in GHG fluxes and the assessment of net GHG balance and its contribution to the GWP of coastal wetlands.

Effects of influent salinity on water purification and greenhouse gas emissions in lab-scale constructed wetlands

Salinity has a significant impact on the sewage treatment efficiency of constructed wetlands (CWs), as well as affecting the greenhouse gas emissions of CWs. A lab-scale CW simulation system was constructed to observe the treatment efficiency and greenhouse gas flux occurring in CWs at different influent salinities (0%, 0.5%, 1.0%, 1.5%, and 2.0%). The results show that (1) the removal rates of COD, TN, NH₄⁺-N, NO₃^--N, and TP reach the highest at salinity of 0 or 0.5%. And the lowest removal rates are all at a salinity of 2.0%. (2) The emission flux of CO₂, CH₄, and N₂O in CWs varies with an increase in salinity. The trends of CO₂ and CH₄ emission flux were consistent with those of COD reduction rate. However, it was opposite for N₂O flux to that of TN, NH₄⁺-N, and NO₃^--N removal rate. Affected by salinity, the greenhouse gas emission flux in this study is generally lower than what was reported in literature. (3) Correlation analysis showed that CO₂ and CH₄ emission fluxes were positively correlated with the COD reduction rate. N₂O emission flux was negatively correlated with the removal rates of TN, NH₄⁺-N, and NO₃^--N. The results suggest that different pollutants are inhibited by salinity to different degrees. COD is more affected by salinity than nitrogen and phosphorus, while nitrogen is more easily inhibited by salinity than phosphorus. CWs can have a high removal rate of pollutants in treating low-salinity wastewater. Although increased salinity reduces treatment efficiency of wastewater to some extent, it also inhibits the emission of CO₂ and CH₄.

Diffusive flux of CH4 and N2O from agricultural river networks: Regression tree and importance analysis

River networks in subtropical agricultural hilly region become an inconvenient greenhouse gas (GHG, methane and nitrous oxide) source because of the influence of human activities, which has caused large uncertainties for refinement of national GHG inventories and their global budget. Based on field monitoring experiments at high temporal resolution, we employed regression tree and importance analysis to identify quantitatively factors that influence the diffusive flux of GHGs to provide a scientific basis for reducing GHG emissions and controlling regional carbon and nitrogen losses. The results indicate that significant spatiotemporal variation of methane (CH₄) nitrous oxide (N₂O) diffusion occurs in all the four reaches (W1, W2, W3 and W4) of Tuojia river networks. Among them, W1 contributed lowest CH₄ (22.55 μg C m^-2 h^-1) and N₂O (5.00 μg N m^-2 h^-1) diffusive flux than the other three (P < 0.05), while W4 offered highest CH₄ (166.15 μg C m^-2 h^-1) and N₂O (30.47 μg N m^-2 h^-1) diffusive flux but with no statistically significant difference between W2 and W3 due to homogeneous extraneous nutrition loading into the two reaches. W4 also contributed largest cumulative flux of CH₄ (14.55 kg C ha^-1 yr^-1) and N₂O (2.69 kg N ha^-1 yr^-1) in Tuojia River networks (P < 0.05). Furthermore, the regression tree and importance analysis indicate that, in the anaerobic environment, dissolved oxygen saturation controlled the production and diffusion for both CH₄ and N₂O. The findings of this investigation highlighted that decision support tools provide an effective pathway to enhance the GHG mitigation technology research in agroecosystems and simultaneously shed light on the global campaign on refinement of national GHG inventories as well as regional nutrient management.

A synthesis of methane emissions from shallow vegetated coastal ecosystems

Vegetated coastal ecosystems (VCEs; i.e., mangroves, salt marshes, and seagrasses) play a critical role in global carbon (C) cycling, storing 10× more C than temperate forests. Methane (CH₄ ), a potent greenhouse gas, can form in the sediments of these ecosystems. Currently, CH₄ emissions are a missing component of VCE C budgets. This review summarizes 97 studies describing CH₄ fluxes from mangrove, salt marsh, and seagrass ecosystems and discusses factors controlling CH₄ flux in these systems. CH₄ fluxes from these ecosystems were highly variable yet they all act as net methane sources (median, range; mangrove: 279.17, -67.33 to 72,867.83; salt marsh: 224.44, -92.60 to 94,129.68; seagrass: 64.80, 1.25-401.50 µmol CH₄ m^-2 day^-1 ). Together CH₄ emissions from mangrove, salt marsh, and seagrass ecosystems are about 0.33-0.39 Tmol CH₄ -C/year-an addition that increases the current global marine CH₄ budget by more than 60%. The majority (~45%) of this increase is driven by mangrove CH₄ fluxes. While organic matter content and quality were commonly reported in individual studies as the most important environmental factors driving CH₄ flux, they were not significant predictors of CH₄ flux when data were combined across studies. Salinity was negatively correlated with CH₄ emissions from salt marshes, but not seagrasses and mangroves. Thus the available data suggest that other environmental drivers are important for predicting CH₄ emissions in vegetated coastal systems. Finally, we examine stressor effects on CH₄ emissions from VCEs and we hypothesize that future changes in temperature and other anthropogenic activites (e.g., nitrogen loading) will likely increase CH₄ emissions from these ecosystems. Overall, this review highlights the current and growing importance of VCEs in the global marine CH₄ budget.

Tolerant mechanisms to O2 deficiency under submergence conditions in plants

Wetland plants can tolerate long-term strict hypoxia and anoxic conditions and the subsequent re-oxidative stress compared to terrestrial plants. During O2 deficiency, both wetland and terrestrial plants use NAD(P)+ and ATP that are produced during ethanol fermentation, sucrose degradation, and major amino acid metabolisms. The oxidation of NADH by non-phosphorylating pathways in the mitochondrial respiratory chain is common in both terrestrial and wetland plants. As the wetland plants enhance and combine these traits especially in their roots, they can survive under long-term hypoxic and anoxic stresses. Wetland plants show two contrasting strategies, low O2 escape and low O2 quiescence strategies (LOES and LOQS, respectively). Differences between two strategies are ascribed to the different signaling networks related to phytohormones. During O2 deficiency, LOES-type plants show several unique traits such as shoot elongation, aerenchyma formation and leaf acclimation, whereas the LOQS-type plants cease their growth and save carbohydrate reserves. Many wetland plants utilize NH4+ as the nitrogen (N) source without NH4+-dependent respiratory increase, leading to efficient respiratory O2 consumption in roots. In contrast, some wetland plants with high O2 supply system efficiently use NO3- from the soil where nitrification occurs. The differences in the N utilization strategies relate to the different systems of anaerobic ATP production, the NO2--driven ATP production and fermentation. The different N utilization strategies are functionally related to the hypoxia or anoxia tolerance in the wetland plants.

TiO2 nanoparticles accelerate methanogenesis in mangrove wetlands sediment

In this study, the response of methane (CH₄) production to the addition of titanium dioxide nanoparticles (TiO₂ NPs) with three types of short-chain fatty acids (sodium acetate, sodium propionate and sodium butyrate) as carbon sources in mangrove sediment was investigated. The results showed that the maximum CH₄ formation rate increased by 45.2%, 32.7% and 48.6% and the maximum cumulative CH₄ production increased by 25.2%, 7.7% and 6.3% with the addition of TiO₂ NPs in the sodium acetate, sodium propionate and sodium butyrate systems, respectively. The microbial community analysis revealed that the electrogenic bacteria Proteiniclasticum and Pseudomonas, butyrate oxidizing bacteria Syntrophomonas and methanogens Methanobacterium and Methanosarcina were significantly enriched in the presence of TiO₂ NPs, indicating that TiO₂ NPs can enhance CH₄ production by stimulating the growth of different species of methanogens and butyrate oxidizing bacteria. The enlarged distance between microbes, the enhanced conductivity of the sediment and the typical microorganisms for direct interspecies electron transfer (DIET) with the addition of TiO₂ NPs suggest that the promoted DIET between distinct microorganisms could be another possible explanation for the improvement in CH₄ production. It can be speculated that a weaker effect on methanogenesis increases under the natural concentration of TiO₂ NPs compared with the experimental conditions; however, the amounts of TiO₂ NPs are increasing enriched in wetland environments. Therefore, the findings of this study increase current knowledge about the effect of nanomaterials on global CH₄ emissions and suggest that the discharge of wastewater containing TiO₂ NPs from the synthesis and incorporation of TiO₂ NPs in customer products needs to be monitored.

Diversity of active root-associated methanotrophs of three emergent plants in a eutrophic wetland in northern China

Root-associated aerobic methanotrophs play an important role in regulating methane emissions from the wetlands. However, the influences of the plant genotype on root-associated methanotrophic structures, especially on active flora, remain poorly understood. Transcription of the pmoA gene, encoding particulate methane monooxygenase in methanotrophs, was analyzed by reverse transcription PCR (RT-PCR) of mRNA isolated from root samples of three emergent macrophytes, including Phragmites australis, Typha angustifolia, and Schoenoplectus triqueter (syn. Scirpus triqueter L.) from a eutrophic wetland. High-throughput sequencing of pmoA based on DNA and cDNA was used to analyze the methanotrophic community. Sequencing of cDNA pmoA amplicons confirmed that the structure of active methanotrophic was not always consistent with DNA. A type I methanotroph, Methylomonas, was the most active group in P. australis, whereas Methylocystis, a type II methanotroph, was the dominant group in S. triqueter. In T. angustifolia, these two types of methanotroph existed in similar proportions. However, at the DNA level, Methylomonas was predominant in the roots of all three plants. In addition, vegetation type could have a profound impact on root-associated methanotrophic community at both DNA and cDNA levels. These results indicate that members of the genera Methylomonas (type I) and Methylocystis (type II) can significantly contribute to aerobic methane oxidation in a eutrophic wetland.

Methane emission and sulfide levels increase in tropical seagrass sediments during temperature stress: A mesocosm experiment

Climate change-induced ocean warming is expected to greatly affect carbon dynamics and sequestration in vegetated shallow waters, especially in the upper subtidal where water temperatures may fluctuate considerably and can reach high levels at low tides. This might alter the greenhouse gas balance and significantly reduce the carbon sink potential of tropical seagrass meadows. In order to assess such consequences, we simulated temperature stress during low tide exposures by subjecting seagrass plants (Thalassia hemprichii) and associated sediments to elevated midday temperature spikes (31, 35, 37, 40, and 45°C) for seven consecutive days in an outdoor mesocosm setup. During the experiment, methane release from the sediment surface was estimated using gas chromatography. Sulfide concentration in the sediment pore water was determined spectrophotometrically, and the plant's photosynthetic capacity as electron transport rate (ETR), and maximum quantum yield (Fv/Fm) was assessed using pulse amplitude modulated (PAM) fluorometry. The highest temperature treatments (40 and 45°C) had a clear positive effect on methane emission and the level of sulfide in the sediment and, at the same time, clear negative effects on the photosynthetic performance of seagrass plants. The effects observed by temperature stress were immediate (within hours) and seen in all response variables, including ETR, Fv/Fm, methane emission, and sulfide levels. In addition, both the methane emission and the size of the sulfide pool were already negatively correlated with changes in the photosynthetic rate (ETR) during the first day, and with time, the correlations became stronger. These findings show that increased temperature will reduce primary productivity and increase methane and sulfide levels. Future increases in the frequency and severity of extreme temperature events could hence reduce the climate mitigation capacity of tropical seagrass meadows by reducing CO2 sequestration, increase damage from sulfide toxicity, and induce the release of larger amounts of methane.

Where old meets new: An ecosystem study of methanogenesis in a reflooded agricultural peatland

Reflooding formerly drained peatlands has been proposed as a means to reduce losses of organic matter and sequester soil carbon for climate change mitigation, but a renewal of high methane emissions has been reported for these ecosystems, offsetting mitigation potential. Our ability to interpret observed methane fluxes in reflooded peatlands and make predictions about future flux trends is limited due to a lack of detailed studies of methanogenic processes. In this study we investigate methanogenesis in a reflooded agricultural peatland in the Sacramento Delta, California. We use the stable-and radio-carbon isotopic signatures of wetland sediment methane, ecosystem-scale eddy covariance flux observations, and laboratory incubation experiments, to identify which carbon sources and methanogenic production pathways fuel methanogenesis and how these processes are affected by vegetation and seasonality. We found that the old peat contribution to annual methane emissions was large (~30%) compared to intact wetlands, indicating a biogeochemical legacy of drainage. However, fresh carbon and the acetoclastic pathway still accounted for the majority of methanogenesis throughout the year. Although temperature sensitivities for bulk peat methanogenesis were similar between open-water (Q₁₀  = 2.1) and vegetated (Q₁₀  = 2.3) soils, methane production from both fresh and old carbon sources showed pronounced seasonality in vegetated zones. We conclude that high methane emissions in restored wetlands constitute a biogeochemical trade-off with contemporary carbon uptake, given that methane efflux is fueled primarily by fresh carbon inputs.

Microbial mechanism for enhanced methane emission in deep soil layer of Phragmites-introduced tidal marsh

The introduction of Phragmites australis is known to substantially increase methane emission in the tidal salt marsh. Previous studies suggested that enhanced carbon input by the introduction may stimulate methanogenic activity. However, the exact mechanisms and the effects of the introduction of P. australis to methane dynamics in the deep soil layer are still unclear. In this study we collected 1 m deep intact soil cores and gas samples at native Suaeda japonica- and P. australis-vegetated temperate tidal salt marshes in Suncheon Bay, Republic of Korea. Rates of methane emission and vertical distribution of soil biogeochemistry and microbial communities were analyzed to understand the relationship among chemical and microbiological properties. The introduction of P. australis significantly enhanced methane emission in sites, which was caused by increased DOC and reduced competitive inhibition between sulfate reducer and methanogens. In particular, reduced competitive inhibition between sulfate reducers and methanogens in deep soil layer may play a substantial role in the enhanced methane emission by the introduction of P. australis. Potential methane production was also significantly higher in deeper soil layers than the surface soil layer. We suggest that deep soil layer plays a critical role in the methane dynamics of tidal salt marsh which is introduced by deep root plants, such as P. australis.

Methane emissions from tree stems in neotropical peatlands

Neotropical peatlands emit large amounts of methane (CH₄ ) from the soil surface, but fluxes from tree stems in these ecosystems are unknown. In this study we investigated CH₄ emissions from five tree species in two forest types common to neotropical lowland peatlands in Panama. Methane from tree stems accounted for up to 30% of net ecosystem CH₄ emissions. Peak CH₄ fluxes were greater during the wet season when the water table was high and temperatures were lower. Emissions were greatest from the hardwood tree Campnosperma panamensis, but most species acted as emitters, with emissions declining exponentially with height along the stem for all species. Overall, species identity, stem diameter, water level, soil temperature and soil CH₄ fluxes explained 54% of the variance in stem CH₄ emissions from individual trees. On the landscape level, On the landscape level, the high emissions from C. panamensis forests resulted in that they emitted at 340 kg CH₄  d^-1 during flooded periods despite their substantially lower areal cover. We conclude that emission from tree stems is an important emission pathway for CH₄ flux from Neotropical peatlands, and that these emissions vary strongly with season and forest type.

A 1-year greenhouse gas budget of a peatland exposed to long-term nutrient infiltration and altered hydrology: high carbon uptake and methane emission

Long-term increased nutrient influx into normally nutrient-limited peatlands in combination with altered hydrological conditions may threaten a peatland's carbon storage function and affect its greenhouse gas (GHG) budget. However, in situ studies on the effects of long-term altered conditions on peatland functioning and GHG budgets are scarce. We thus quantified GHG fluxes in a peatland exposed to enhanced water level fluctuations and long-term nutrient infiltration in Ontario, Canada, via eddy-covariance and flux chamber measurements. The peatland was a prominent sink of - 680 ± 202 g carbon dioxide (CO₂) and a source of 22 ± 8 g methane (CH₄) m^-2 year^-1, resulting in a negative radiative forcing of - 80 g CO₂ eq. m^-2 y^-1. During the growing season CH₄ fluxes were constantly high (0.1 g m^-2 s^-1). Further, on three dates, we measured nitrous oxide (N₂O) fluxes and observed a small flux of 2.2 mg m^-2 day^-1 occurring during the thawing period. Taking the studied ecosystem as a model system for other peatlands exposed to long-term increased nutrient infiltration and enhanced water level fluctuations, our data suggest that such peatlands can maintain their carbon storage function and CO₂ sequestration may outweigh emissions of CH₄.

The role of wetland microorganisms in plant-litter decomposition and soil organic matter formation: a critical review

New soil organic matter (SOM) models highlight the role of microorganisms in plant litter decomposition and storage of microbial-derived carbon (C) molecules. Wetlands store more C per unit area than any other ecosystem, but SOM storage mechanisms such as aggregation and metal complexes are mostly untested in wetlands. This review discusses what is currently known about the role of microorganisms in SOM formation and C sequestrations, as well as, measures of microbial communities as they relate to wetland C cycling. Studies within the last decade have yielded new insights about microbial communities. For example, microbial communities appear to be adapted to short-term fluctuations in saturation and redox and researchers have observed synergistic pairings that in some cases run counter to thermodynamic theory. Significant knowledge gaps yet to be filled include: (i) What controls microbial access to and decomposition of plant litter and SOM? (ii) How does microbial community structure shape C fate, across different wetland types? (iii) What types of plant and microbial molecules contribute to SOM accumulation? Studies examining the active microbial community directly or that utilize multi-pronged approaches are shedding new light on microbial functional potential, however, and promise to improve wetland C models in the near future.

The transformation of macrophyte-derived organic matter to methane relates to plant water and nutrient contents

Macrophyte detritus is one of the main sources of organic carbon (OC) in inland waters, and it is potentially available for methane (CH₄) production in anoxic bottom waters and sediments. However, the transformation of macrophyte-derived OC into CH₄ has not been studied systematically, thus its extent and relationship with macrophyte characteristics remains uncertain. We performed decomposition experiments of macrophyte detritus from 10 different species at anoxic conditions, in presence and absence of a freshwater sediment, in order to relate the extent and rate of CH₄ production to the detritus water content, C/N and C/P ratios. A significant fraction of the macrophyte OC was transformed to CH₄ (mean = 7.9%; range = 0-15.0%) during the 59-d incubation, and the mean total C loss to CO₂ and CH₄ was 17.3% (range = 1.3-32.7%). The transformation efficiency of macrophyte OC to CH₄ was significantly and positively related to the macrophyte water content, and negatively to its C/N and C/P ratios. The presence of sediment increased the transformation efficiency to CH₄ from an average of 4.0% (without sediment) to 11.8%, possibly due to physicochemical conditions favorable for CH₄ production (low redox potential, buffered pH) or because sediment particles facilitate biofilm formation. The relationship between macrophyte characteristics and CH₄ production can be used by future studies to model CH₄ emission in systems colonized by macrophytes. Furthermore, this study highlights that the extent to which macrophyte detritus is mixed with sediment also affects CH₄ production.

Carbon budgets of wetland ecosystems in China

Wetlands contain a large proportion of carbon (C) in the biosphere and partly affect climate by regulating C cycles of terrestrial ecosystems. China contains Asia's largest wetlands, accounting for about 10% of the global wetland area. Although previous studies attempted to estimate C budget in China's wetlands, uncertainties remain. We conducted a synthesis to estimate C uptake and emission of wetland ecosystems in China using a dataset compiled from published literature. The dataset comprised 193 studies, including 370 sites representing coastal, river, lake and marsh wetlands across China. In addition, C stocks of different wetlands in China were estimated using unbiased data from the China Second Wetlands Survey. The results showed that China's wetlands sequestered 16.87 Pg C (315.76 Mg C/ha), accounting for about 3.8% of C stocks in global wetlands. Net ecosystem productivity, jointly determined by gross primary productivity and ecosystem respiration, exhibited annual C sequestration of 120.23 Tg C. China's wetlands had a total gaseous C loss of 173.20 Tg C per year from soils, including 154.26 Tg CO₂ -C and 18.94 Tg CH₄ -C emissions. Moreover, C stocks, uptakes and gaseous losses varied with wetland types, and were affected by geographic location and climatic factors (precipitation and temperature). Our results provide better estimation of the C budget in China's wetlands and improve understanding of their contribution to the global C cycle in the context of global climate change.