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Nieto EE, Jurburg SD, Steinbach N, Festa S, Morelli IS, Coppotelli BM, Chatzinotas A. DNA stable isotope probing reveals the impact of trophic interactions on bioaugmentation of soils with different pollution histories. MICROBIOME 2024; 12:146. [PMID: 39113100 PMCID: PMC11305082 DOI: 10.1186/s40168-024-01865-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 06/26/2024] [Indexed: 08/10/2024]
Abstract
BACKGROUND Bioaugmentation is considered a sustainable and cost-effective methodology to recover contaminated environments, but its outcome is highly variable. Predation is a key top-down control mechanism affecting inoculum establishment, however, its effects on this process have received little attention. This study focused on the impact of trophic interactions on bioaugmentation success in two soils with different pollution exposure histories. We inoculated a 13C-labelled pollutant-degrading consortium in these soils and tracked the fate of the labelled biomass through stable isotope probing (SIP) of DNA. We identified active bacterial and eukaryotic inoculum-biomass consumers through amplicon sequencing of 16S rRNA and 18S rRNA genes coupled to a novel enrichment factor calculation. RESULTS Inoculation effectively increased PAH removal in the short-term, but not in the long-term polluted soil. A decrease in the relative abundance of the inoculated genera was observed already on day 15 in the long-term polluted soil, while growth of these genera was observed in the short-term polluted soil, indicating establishment of the inoculum. In both soils, eukaryotic genera dominated as early incorporators of 13C-labelled biomass, while bacteria incorporated the labelled biomass at the end of the incubation period, probably through cross-feeding. We also found different successional patterns between the two soils. In the short-term polluted soil, Cercozoa and Fungi genera predominated as early incorporators, whereas Ciliophora, Ochrophyta and Amoebozoa were the predominant genera in the long-term polluted soil. CONCLUSION Our results showed differences in the inoculum establishment and predator community responses, affecting bioaugmentation efficiency. This highlights the need to further study predation effects on inoculum survival to increase the applicability of inoculation-based technologies. Video Abstract.
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Affiliation(s)
- Esteban E Nieto
- Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET), CINDEFI (UNLP, CCT-La Plata Street 50 N°227, 1900, La Plata, Argentina.
- Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
| | - Stephanie D Jurburg
- Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Nicole Steinbach
- Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
| | - Sabrina Festa
- Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET), CINDEFI (UNLP, CCT-La Plata Street 50 N°227, 1900, La Plata, Argentina
| | - Irma S Morelli
- Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET), CINDEFI (UNLP, CCT-La Plata Street 50 N°227, 1900, La Plata, Argentina
- Comisión de Investigaciones Científicas de La Provincia de Buenos Aires, La Plata, Argentina
| | - Bibiana M Coppotelli
- Centro de Investigación y Desarrollo en Fermentaciones Industriales, CONICET), CINDEFI (UNLP, CCT-La Plata Street 50 N°227, 1900, La Plata, Argentina
| | - Antonis Chatzinotas
- Department of Applied Microbial Ecology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
- Institute of Biology, Leipzig University, Leipzig, Germany.
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
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Golikova E, Varfolomeeva MA, Kursheva A, Morgunova I, Aristov D, Renaud PE, Granovitch A, Korsun S. Measuring ecological quality status in low-diversity Arctic intertidal foraminiferal assemblages using a diversity-based index. MARINE POLLUTION BULLETIN 2024; 203:116473. [PMID: 38820879 DOI: 10.1016/j.marpolbul.2024.116473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 05/04/2024] [Accepted: 05/04/2024] [Indexed: 06/02/2024]
Abstract
EcoQS assessment of the marine intertidal zone based on its fauna is challenging because the assemblages have a low diversity and consist of stress tolerant species. The new approach we propose is to pool foraminiferal diversity (effective number of species exp(H'bc)) across the whole intertidal zone including the salt marsh and tidal flat. In seven fjordheads studied in northern Fennoscandia, polycyclic aromatic hydrocarbon (PAH) concentrations indicated low levels of pollution (EcoQSPAH Excellent to Moderate). Jadammina or Balticammina dominated the salt marsh, Elphidium albiumbilicatum, Elphidium williamsoni, Elphidium clavatum, and Buccella frigida occurred in the tidal flat. Ovammina opaca thrived in both belts. While foraminiferal test abnormalities are often proposed to measure pollution impacts, we did not detect any correlation with PAHs. EcoQS based on foraminiferal diversity (EcoQSforam Excellent to Good) matched EcoQS based on PAHs suggesting that pooled foraminiferal diversity reliably measures intertidal EcoQS.
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Affiliation(s)
- Elena Golikova
- Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia.
| | - Marina A Varfolomeeva
- Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia
| | - Anna Kursheva
- Academician I.S. Gramberg All-Russian Scientific Research Institute for Geology and Mineral Resources of the Ocean (FSBI "VNIIOkeangeologia"), 190121, Angliyskiy Av. 1, St. Petersburg, Russia
| | - Inna Morgunova
- Academician I.S. Gramberg All-Russian Scientific Research Institute for Geology and Mineral Resources of the Ocean (FSBI "VNIIOkeangeologia"), 190121, Angliyskiy Av. 1, St. Petersburg, Russia
| | - Dmitry Aristov
- Zoological Institute, Russian Academy of Sciences, Universitetskaya emb. 1, St. Petersburg 199034, Russia
| | - Paul E Renaud
- Akvaplan-niva, Fram Centre for Climate and Environment, N-9296 Tromsø, Norway
| | - Andrei Granovitch
- Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia
| | - Sergei Korsun
- Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia; Shirshov Institute of Oceanology, Russian Academy of Sciences, Nakhimovskiy pr. 36, 117997 Moscow, Russia
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Du J, Jia T, Liu J, Chai B. Relationships among protozoa, bacteria and fungi in polycyclic aromatic hydrocarbon-contaminated soils. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 270:115904. [PMID: 38181605 DOI: 10.1016/j.ecoenv.2023.115904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 12/16/2023] [Accepted: 12/27/2023] [Indexed: 01/07/2024]
Abstract
Soil bacterial and fungal communities play key roles in the degradation of organic contaminants, and their structure and function are regulated by bottom-up and top-down factors. Microbial ecological effects of polycyclic aromatic hydrocarbons (PAHs) and trophic interactions among protozoa and bacteria/fungi in PAH-polluted soils have yet to be determined. We investigated the trophic interactions and structure of the microbiome in PAH-contaminated wasteland and farmland soils. The results indicated that the total concentration of the 16 PAHs (∑PAHs) was significantly correlated with the Shannon index, NMDS1 and the relative abundances of bacteria, fungi and protozoa (e.g., Pseudofungi) in the microbiome. Structural equation modelling and linear fitting demonstrated cascading relationships among PAHs, protozoan and bacterial/fungal communities in terms of abundance and diversity. Notably, individual PAHs were significantly correlated with microbe-grazing protozoa at the genus level, and the abundances of these organisms were significantly correlated with those of PAH-degrading bacteria and fungi. Bipartite networks and linear fitting indicated that protozoa indirectly modulate PAH degradation by regulating PAH-degrading bacterial and fungal communities. Therefore, protozoa might be involved in regulating the microbial degradation of PAHs by predation in contaminated soil.
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Affiliation(s)
- Jingqi Du
- Shanxi Key Laboratory of Ecological Restoration on the Loess Plateau, Institute of the Loess Plateau, Shanxi University, Taiyuan, China; Department of Life Sciences, Lyuliang University, Lyuliang, China
| | - Tong Jia
- Shanxi Key Laboratory of Ecological Restoration on the Loess Plateau, Institute of the Loess Plateau, Shanxi University, Taiyuan, China
| | - Jinxian Liu
- Shanxi Key Laboratory of Ecological Restoration on the Loess Plateau, Institute of the Loess Plateau, Shanxi University, Taiyuan, China
| | - Baofeng Chai
- Shanxi Key Laboratory of Ecological Restoration on the Loess Plateau, Institute of the Loess Plateau, Shanxi University, Taiyuan, China.
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Oliveira Dos Anjos TB, Abel S, Lindehoff E, Bradshaw C, Sobek A. Assessing the effects of a mixture of hydrophobic contaminants on the algae Rhodomonas salina using the chemical activity concept. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2023; 265:106742. [PMID: 37977012 DOI: 10.1016/j.aquatox.2023.106742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 10/14/2023] [Accepted: 10/29/2023] [Indexed: 11/19/2023]
Abstract
The production and release of chemicals from human activities are on the rise. Understanding how the aquatic environment is affected by the presence of an unknown number of chemicals is lacking. We employed the chemical activity concept to assess the combined effects of hydrophobic organic contaminants on the phytoplankton species Rodomonas salina. Chemical activity is additive, and refers to the relative saturation of a chemical in the studied matrix. The growth of R. salina was affected by chemical activity, following a chemical activity-response curve, resulting in an Ea50 value of 0.078, which falls within the baseline toxicity range observed in earlier studies. The chlorophyll a content exhibited both increases and decreases with rising chemical activity, with the increase possibly linked to an antioxidant mechanism. Yet, growth inhibition provided more sensitive and robust responses compared to photosynthesis-related endpoints; all measured endpoints correlated with increased chemical activity. Growth inhibition is an ecologically relevant endpoint and integrates thermodynamic principles such as membrane disruption. Our study utilized passive dosing, enabling us to control exposure and determine activities in both the medium and the algae. The concept of chemical activity and our results can be extended to other neutral chemical groups as effects of chemical activity remain independent of the mixture composition.
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Affiliation(s)
| | - Sebastian Abel
- Department of Environmental Science, Stockholm University, Stockholm, Sweden
| | - Elin Lindehoff
- Department of Biology and Environmental Science, Linnaeus University, Kalmar, Sweden
| | - Clare Bradshaw
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Anna Sobek
- Department of Environmental Science, Stockholm University, Stockholm, Sweden
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Zeng X, Sun L, Ling X, Jiang Y, Shen J, Liang L, Zhang X. Comprehensive analysis identifies novel targets of gemcitabine to improve chemotherapy treatment strategies for colorectal cancer. Front Endocrinol (Lausanne) 2023; 14:1170526. [PMID: 37664836 PMCID: PMC10471186 DOI: 10.3389/fendo.2023.1170526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 07/04/2023] [Indexed: 09/05/2023] Open
Abstract
Background Gemcitabine (GEM) is a second-line anticancer drug of choice for some colorectal cancer (CRC) patients, and GEM inability to be commonly available in the clinic due to the lack of clarity of the exact action targets. Methods The half maximal inhibitory concentration (IC50) of GEM treatment for 42 CRC cell lines were accessed from the Genomics of Drug sensitivity in Cancer (GDSC) database. High-throughput sequencing data of CRC patients were captured in The Cancer Genome Atlas (TCGA) and Weighted correlation network analysis (WGCNA) was conducted. Pearson correlations were derived for GEM potency-related genes. Differential analysis was conducted in the TCGA cohort to obtain CRC development-related genes (CDRGs), and univariate COX model analysis was performed on CDRGs overlapping with GEM potency-related genes to obtain CDRGs affecting CRC prognosis. Hub genes affecting GEM potency were identified by Spearman correlation. Results CALB2 and GPX3 were identified as potential targets for GEM treatment of CRC via prognostic analysis, which we also observed to be elevated with elevated clinical stage in CRC patients. The enhanced expression of CALB2 and GPX3 genes identified in the pathway analysis might inhibit the body metabolism as well as activate immune and inflammation related pathways. In addition, we found that CALB2 and GPX3 could also be considered as prognostic biomarkers in pan-cancer. Finally, we found that CALB2 and GPX3 were remarkably associated with the drug sensitivity of MG-132, Dasatinib, Shikonin, Midostaurin, MS-275, and Z-LNle-CHO, which were expected to be the drugs of choice for GEM combination. Conclusion CALB2 and GPX3 represent prognostic biomarkers for CRC and they might be potential action targets for GEM. Our study offered innovative ideas for GEM administration strategies.
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Affiliation(s)
- Xinxin Zeng
- Second Department of Oncology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
| | - Liyue Sun
- Second Department of Oncology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
| | - Xiaomei Ling
- Medical Research Center, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
| | - Yuying Jiang
- Second Department of Oncology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
- Department of Radiation Oncology, Guangdong Medical University, Zhanjiang, China
| | - Ju Shen
- Second Department of Oncology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
- Department of Radiation Oncology, Guangdong Medical University, Zhanjiang, China
| | - Lei Liang
- Guangdong Engineering Research Center of Chinese Medicine & Disease Susceptibility, School of Traditional Chinese Medicine, Jinan University, Guangzhou, China
| | - Xuhui Zhang
- Second Department of Oncology, The Affiliated Guangdong Second Provincial General Hospital of Jinan University, Guangzhou, China
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Wu S, Dong Y, Deng Y, Cui L, Zhuang X. Protistan consumers and phototrophs are more sensitive than bacteria and fungi to pyrene exposure in soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 822:153539. [PMID: 35104532 DOI: 10.1016/j.scitotenv.2022.153539] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 01/09/2022] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
The levels of organic pollutants, in particular polycyclic aromatic hydrocarbons (PAHs), are increasing worldwide, yet we lack clarity on how these pollutants affect microbial communities of different trophic levels, including protists, fungi, and bacteria. Herein, we conducted soil microcosm incubation experiments to investigate the effects of pyrene, a typical PAH, on microbial communities along concentration gradients from 0 to 500 mg kg-1 soil. Protistan communities were more sensitive to pollutants than fungal and bacterial communities, and protistan consumers and phototrophs were the dominant trophic functional groups. In addition, by assessing changes in the diversity and structure of the soil microbiome and ecological networks, we found that the microbial communities, including the protistan community and the two trophic communities composed of protists and their prey, were destabilized with increasing stress and pyrene concentrations. We identified links and complicated relationships between phototrophs, bacteria, and consumers in food webs, which explain the importance of protists in stabilizing the microbial community. Collectively, our work provides novel evidence that protists are considerably sensitive to pollution stress, and caution should be exercised in future evaluations of the protistan and multitrophic communities in polluted soil ecosystems.
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Affiliation(s)
- Shanghua Wu
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuzhu Dong
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ye Deng
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lijuan Cui
- Institute of Wetland Research, Chinese Academy of Forestry, Beijing 100091, China; Beijing Key Laboratory of Wetland Ecological Function and Restoration, Beijing 100091, China
| | - Xuliang Zhuang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China; Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.
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7
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Wu C, Chao Y, Shu L, Qiu R. Interactions between soil protists and pollutants: An unsolved puzzle. JOURNAL OF HAZARDOUS MATERIALS 2022; 429:128297. [PMID: 35077968 DOI: 10.1016/j.jhazmat.2022.128297] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 01/13/2022] [Accepted: 01/15/2022] [Indexed: 06/14/2023]
Abstract
Soil protists are essential but often overlooked in soils, although they play crucial functional roles in the terrestrial ecosystem. While soil protists have drawn increased attention to their functional role in soils, their interaction with soil pollutants remains unresolved. This review provides a first overview of the current understanding of interactions between soil protists and major pollutants (heavy metals, organic pollutants, nanoparticles, and soil pathogens). We summarize how soil pollutants affect protists and vice versa, showing that we are just beginning to understand their complex interactions. In addition, we identify five research gaps, including hidden diversity, adaptive mechanisms, species interactions, soil bioindicators and environmental applications, and we hope that our review will help promote and build research guidelines for the future. In conclusion, a better understanding of soil pollutant-protist interactions will significantly increase our knowledge of the pollution ecology in the soil and how soil organisms respond and adapt to environmental pollution, which will contribute to the bioremediation and environmental applications of protists in soil.
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Affiliation(s)
- Chenyuan Wu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, China
| | - Yuanqing Chao
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, China
| | - Longfei Shu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, China; Environmental Microbiomics Research Center, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China.
| | - Rongliang Qiu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, China; Guangdong Laboratory for Lingnan Modern Agriculture, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China.
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Gorovtsov A, Demin K, Sushkova S, Minkina T, Grigoryeva T, Dudnikova T, Barbashev A, Semenkov I, Romanova V, Laikov A, Rajput V, Kocharovskaya Y. The effect of combined pollution by PAHs and heavy metals on the topsoil microbial communities of Spolic Technosols of the lake Atamanskoe, Southern Russia. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2022; 44:1299-1315. [PMID: 34528142 DOI: 10.1007/s10653-021-01059-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
The contamination with organic and inorganic pollutants changes significantly soil microbial community structure. These shifts indicate anthropogenic pressure and help to discover new possibilities for soil remediation. In this study, the microbial community structure of Spolic Technosols formed at the territory of a former industrial sludge reservoir near the Kamensk-Shakhtinsky (Southern Russia) was studied using a metagenomics approach. The studied soils contain high concentrations of heavy metals (HM) (up to 72,900 mg kg-1) and 16 priority polycyclic aromatic hydrocarbons (PAHs) (up to 6670 mg kg-1). Its microbial communities demonstrate an excellent adaptability level reflected in their complexity and diversity. As shown by the high values of alpha diversity indices (Shannon values up to 10.1, Chao1 values from 1430 to 4273), instead of decreasing quantitatively and qualitatively on the systemic level, microbial communities tend to undergo complex redistribution. Regardless of contamination level, the share of Actinobacteria and Proteobacteria was consistently high and varied from 20 to 50%. Following the results of the Mann-Whitney U test, there were significant changes of less abundant phyla. The abundance of oligotrophic bacteria from Gemmatimonadetes and Verrucomicrobia phyla and autotrophic bacteria (e.g., Nitrospira) decreased due to the high PAH's level. And abundance of Firmicutes and amoebae-associated bacteria such as TM6 and soil Chlamydia increased in highly contaminated plots. In the Spolic Technosols studied, the influence of factors on the microbial community composition decreased from PAHs concentration to soil characteristics (organic carbon content) and phylum-phylum interactions. The high concentrations of HMs influenced weakly on the microbial community composition.
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Affiliation(s)
- Andrey Gorovtsov
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | - Konstantin Demin
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | - Svetlana Sushkova
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090.
| | - Tatiana Minkina
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | | | - Tamara Dudnikova
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | - Andrey Barbashev
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | - Ivan Semenkov
- Lomonosov Moscow State University, Moscow, Russian Federation, 119991
| | | | | | - Vishnu Rajput
- Southern Federal University, Rostov-on-Don, Russian Federation, 344090
| | - Yulia Kocharovskaya
- Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Pushchino, Moscow region, Russian Federation, 142290
- The Federal State Budget Educational Institution of Higher Education, Pushchino State Institute of Natural Science, Pushchino, Moscow region, Russian Federation, 142290
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Birch H, Sjøholm KK, Dechesne A, Sparham C, van Egmond R, Mayer P. Biodegradation Kinetics of Fragrances, Plasticizers, UV Filters, and PAHs in a Mixture─Changing Test Concentrations over 5 Orders of Magnitude. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:293-301. [PMID: 34936331 DOI: 10.1021/acs.est.1c05583] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Biodegradation of organic chemicals emitted to the environment is carried out by mixed microbial communities growing on multiple natural and xenobiotic substrates at low concentrations. This study aims to (1) perform simulation type biodegradation tests at a wide range of mixture concentrations, (2) determine the concentration effect on the biodegradation kinetics of individual chemicals, and (3) link the mixture concentration and degradation to microbial community dynamics. Two hundred ninety-four parallel test systems were prepared using wastewater treatment plant effluent as inoculum and passive dosing to add a mixture of 19 chemicals at 6 initial concentration levels (ng/L to mg/L). After 1-30 days of incubation at 12 °C, abiotic and biotic test systems were analyzed using arrow solid phase microextraction and GC-MS/MS. Biodegradation kinetics at the highest test concentrations were delayed for several test substances but enhanced for the reference chemical naphthalene. Test concentration thus shifted the order in which chemicals were degraded. 16S rRNA gene amplicon sequencing indicated that the highest test concentration (17 mg C/L added) supported the growth of the genera Acidovorax, Novosphingobium, and Hydrogenophaga, whereas no such effect was observed at lower concentrations. The chemical and microbial results confirm that too high mixture concentrations should be avoided when aiming at determining environmentally relevant biodegradation data.
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Affiliation(s)
- Heidi Birch
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark
| | - Karina Knudsmark Sjøholm
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark
| | - Arnaud Dechesne
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark
| | - Chris Sparham
- Safety & Environmental Assurance Centre, Unilever, Bedford MK44 1LQ, U.K
| | - Roger van Egmond
- Safety & Environmental Assurance Centre, Unilever, Bedford MK44 1LQ, U.K
| | - Philipp Mayer
- Department of Environmental Engineering, Technical University of Denmark, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark
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Møller MT, Birch H, Sjøholm KK, Hammershøj R, Jenner K, Mayer P. Biodegradation of an essential oil UVCB - Whole substance testing and constituent specific analytics yield biodegradation kinetics of mixture constituents. CHEMOSPHERE 2021; 278:130409. [PMID: 34126677 DOI: 10.1016/j.chemosphere.2021.130409] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 03/01/2021] [Accepted: 03/22/2021] [Indexed: 05/20/2023]
Abstract
Testing and assessing the persistency, bioaccumulative and toxic properties of UVCBs (substances of Unknown or Variable composition, Complex reaction products or Biological materials) pose major technical and analytical challenges. The main aim of this study was to combine whole substance biodegradation testing with constituent specific analytics for determining primary biodegradation kinetics of the main UVCB constituents. An additional aim was to link the primary biodegradation kinetics of the main constituents to the bioaccumulation potential and baseline toxicity potential of the UVCB. Two closed biodegradation experiments were conducted using similar test systems but different analyses. The model substance, cedarwood Virginia oil, was tested at a low concentration and wastewater treatment plant effluent served as inoculum. We used microvolume solvent spiking for a quantitative mass transfer of the UVCB, while avoiding that co-solvent degradation would lead to anaerobic conditions. The biodegradation of UVCB constituents was determined with automated solid-phase microextraction coupled to GC-MS/MS using targeted analysis for main constituents and non-targeted analysis for minor constituents and non-polar degradation products. Primary biodegradation kinetics of main constituents, accounting for 73% w/w of the mixture, were successfully determined with degradation rate constants ranging from 0.09 to 0.25 d-1. Minor constituents were also degraded and non-polar degradation products were not observed. Finally, the bioaccumulation potential and baseline toxicity potential of the mixture at test start were calculated and both parameters decreased then substantially. The strength of the new approach is the possibility of biodegradation testing of a whole UVCB at low concentration while generating constituent specific biodegradation kinetics.
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Affiliation(s)
- Mette Torsbjerg Møller
- Technical University of Denmark, Department of Environmental Engineering, Building 115, 2800 Kgs, Lyngby, Denmark
| | - Heidi Birch
- Technical University of Denmark, Department of Environmental Engineering, Building 115, 2800 Kgs, Lyngby, Denmark
| | - Karina Knudsmark Sjøholm
- Technical University of Denmark, Department of Environmental Engineering, Building 115, 2800 Kgs, Lyngby, Denmark
| | - Rikke Hammershøj
- Technical University of Denmark, Department of Environmental Engineering, Building 115, 2800 Kgs, Lyngby, Denmark
| | | | - Philipp Mayer
- Technical University of Denmark, Department of Environmental Engineering, Building 115, 2800 Kgs, Lyngby, Denmark.
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Yang Y, Chen Z, Zhang J, Wu S, Yang L, Chen L, Shao Y. The challenge of micropollutants in surface water of the Yangtze River. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 780:146537. [PMID: 33774309 DOI: 10.1016/j.scitotenv.2021.146537] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Revised: 03/10/2021] [Accepted: 03/12/2021] [Indexed: 06/12/2023]
Abstract
The Yangtze River, the third largest river and supporting nearly one-third of Chinese population, has been severely polluted in recent decades. Among the numerous pollutants, organic micropollutants, as one kind of important emerging contaminants, are currently key contaminants of concern. However, few studies have focused on their mixture environmental impacts, especially for the complex environmental mixtures. In the current study, four categories of organic micropollutants, including 16 polycyclic aromatic hydrocarbons (PAHs), 32 polychlorinated biphenyls (PCBs), 27 organochlorine pesticides (OCPs) and 20 pharmaceutical and personal care products (PPCPs) are analyzed in 10 study sites on the Yangtze River. Subsequently, comprehensive risk assessment for micropollutant mixtures was conducted by risk quotient based on the sum of PEC/PNEC values (RQMEC/PNEC) and risk quotient based on the toxic units (RQSTU). The mixture risk evaluation based on the detected environmental concentrations indicates that micropollutant mixtures in surface water of the Yangtze River exhibited relative high risks for aquatic organisms. The observed results revealed that mixture risk assessments have to consider the complexity of environmental samples; PCBs dominated main mixture risks in the upper stream; PAHs contributed major comprehensive risks in the middle stream; and OCPs were the key micropollutants in the downstream. The outcomes of the present study here can serve for pollution control in the Yangtze River, which provide the scientific underpinnings and regulatory reference for risk management and river protection.
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Affiliation(s)
- Yinjie Yang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China
| | - Zhongli Chen
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China
| | - Jialing Zhang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China
| | - Siqi Wu
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China
| | - Li Yang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China
| | - Lin Chen
- Department of Otorhinolaryngology, The first Hospital Affiliated to Army Medical University (Southwest Hospital), Chongqing 400038, PR China
| | - Ying Shao
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, College of Environment and Ecology, Chongqing University, Chongqing 400030, PR China.
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Parkerton TF, Letinski DJ, Febbo EJ, Butler JD, Sutherland CA, Bragin GE, Hedgpeth BM, Kelley BA, Redman AD, Mayer P, Camenzuli L, Vaiopoulou E. Assessing toxicity of hydrophobic aliphatic and monoaromatic hydrocarbons at the solubility limit using novel dosing methods. CHEMOSPHERE 2021; 265:129174. [PMID: 33340835 DOI: 10.1016/j.chemosphere.2020.129174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 11/23/2020] [Accepted: 11/28/2020] [Indexed: 06/12/2023]
Abstract
Reliable delineation of aquatic toxicity cut-offs for poorly soluble hydrocarbons is lacking. In this study, vapor and passive dosing methods were applied in limit tests with algae and daphnids to evaluate the presence or absence of chronic effects at exposures corresponding to the water solubility for representative hydrocarbons from five structural classes: branched alkanes, mono, di, and polynaphthenic (cyclic) alkanes and monoaromatic naphthenic hydrocarbons (MANHs). Algal growth rate and daphnid immobilization, growth and reproduction served as the chronic endpoints investigated. Results indicated that the dosing methods applied were effective for maintaining mean measured exposure concentrations within a factor of two or higher of the measured water solubility of the substances investigated. Chronic effects were not observed for hydrocarbons with an aqueous solubility below approximately 5 μg/L. This solubility cut-off corresponds to structures consisting of 13-14 carbons for branched and cyclic alkanes and 16-18 carbons for MANHs. These data support reliable hazard and risk evaluation of hydrocarbon classes that comprise petroleum substances and the methods described have broad applicability for establishing empirical solubility cut-offs for other classes of hydrophobic substances. Future work is needed to understand the role of biotransformation on the observed presence or absence of toxicity in chronic tests.
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Affiliation(s)
- Thomas F Parkerton
- ExxonMobil Biomedical Sciences, Spring, TX, USA; Concawe, Environmental Management Group, Brussels, Belgium
| | | | | | | | | | | | | | | | - Aaron D Redman
- ExxonMobil Petroleum and Chemical, Machelen, Belgium; Concawe, Environmental Management Group, Brussels, Belgium
| | - Philipp Mayer
- Department of Environmental Engineering, Technical University of Denmark, Lyngby, Denmark
| | - Louise Camenzuli
- ExxonMobil Petroleum and Chemical, Machelen, Belgium; Concawe, Environmental Management Group, Brussels, Belgium
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Hammershøj R, Sjøholm KK, Birch H, Brandt KK, Mayer P. Biodegradation kinetics testing of two hydrophobic UVCBs - potential for substrate toxicity supports testing at low concentrations. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2020; 22:2172-2180. [PMID: 33000828 DOI: 10.1039/d0em00288g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The biodegradation kinetics of UVCB substances (unknown or variable composition, complex reaction products or biological materials) should be determined below the solubility limit to avoid experimental artefacts by the non-dissolved mixture. Recently, we reported delayed biodegradation kinetics of single petroleum hydrocarbons even at concentrations just below the solubility limit and attributed this to toxicity. The present study aimed to determine the concentration effect on biodegradation kinetics for constituents in two UVCBs, using surface water from a rural stream as the inoculum. Parallel biodegradation tests of diesel and lavender oil were conducted at concentrations just below the solubility limit and two orders of magnitude lower. The biodegradation kinetics of diesel oil constituents were generally similar at the two concentrations, which coincided with the stimulation of bacterial productivity (growth) at both concentrations, determined by [3H]leucine incorporation. By contrast, the biodegradation of lavender oil constituents was significantly delayed or even halted at the high test concentration. This was consistent with lavender oil stimulating bacterial growth at low concentration but inhibiting it at high concentration. The delayed biodegradation kinetics of lavender oil constituents at high concentration was best explained by mixture toxicity near the solubility limit. Consequently, biodegradation testing of hydrophobic UVCBs should be conducted at low, environmentally relevant concentrations ensuring that mixture toxicity does not affect the biodegradation kinetics.
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Affiliation(s)
- Rikke Hammershøj
- Technical University of Denmark, Department of Environmental Engineering, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark.
| | - Karina K Sjøholm
- Technical University of Denmark, Department of Environmental Engineering, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark.
| | - Heidi Birch
- Technical University of Denmark, Department of Environmental Engineering, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark.
| | - Kristian K Brandt
- University of Copenhagen, Department of Plant and Environmental Sciences, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Philipp Mayer
- Technical University of Denmark, Department of Environmental Engineering, Bygningstorvet, Building 115, 2800 Kgs. Lyngby, Denmark.
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