1
|
Ullah R, Farias J, Feyissa BA, Tsui MTK, Chow A, Williams C, Karanfil T, Ligaba-Osena A. Combined effects of polyamide microplastic and sulfamethoxazole in modulating the growth and transcriptome profile of hydroponically grown rice (Oryza sativa L.). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 952:175909. [PMID: 39233070 DOI: 10.1016/j.scitotenv.2024.175909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Revised: 08/28/2024] [Accepted: 08/28/2024] [Indexed: 09/06/2024]
Abstract
The use of reclaimed water from wastewater treatment plants for irrigation has a risk of introducing micropollutants such as microplastics (MPs) and antimicrobials (AMs) into the agroecosystem. This study was conducted to investigate the effects of single and combined treatment of 0.1 % polyamide (PA ∼15 μm), and varying sulfamethoxazole (SMX) levels 0, 10, 50, and 150 mg/L on rice seedlings (Oryza sativa L.) for 12 days. The study aimed to assess the impact of these contaminants on the morphological, physiological, and biochemical parameters of the rice plants. The findings revealed that rice seedlings were not sensitive to PA alone. However, SMX alone or in combination with PA, significantly inhibited shoot and root growth, total biomass, and affected photosynthetic pigments. Higher concentrations of SMX increased antioxidant enzyme activity, indicating oxidative stress. The roots had a higher SMX content than the shoots, and the concentration of minerals such as iron, copper, and magnesium were reduced in roots treated with SMX. RNA-seq analysis showed changes in the expression of genes related to stress, metabolism, and transport in response to the micropollutants. Overall, this study provides valuable insights on the combined impacts of MPs and AMs on food crops, the environment, and human health in future risk assessments and management strategies in using reclaimed water.
Collapse
Affiliation(s)
- Raza Ullah
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA
| | - Julia Farias
- USDA-ARS, US Arid Land Agricultural Research Center, 21881 N. Cardon Ln, Maricopa, AZ 85138, USA
| | | | - Martin Tsz-Ki Tsui
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA; School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, New Territories, China; Earth and Environmental Sciences Program, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, China
| | - Alex Chow
- Earth and Environmental Sciences Program, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, China
| | - Clinton Williams
- USDA-ARS, US Arid Land Agricultural Research Center, 21881 N. Cardon Ln, Maricopa, AZ 85138, USA
| | - Tanju Karanfil
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC 29634, USA
| | - Ayalew Ligaba-Osena
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA.
| |
Collapse
|
2
|
Seregin IV, Kozhevnikova AD. The Role of Low-Molecular-Weight Organic Acids in Metal Homeostasis in Plants. Int J Mol Sci 2024; 25:9542. [PMID: 39273488 PMCID: PMC11394999 DOI: 10.3390/ijms25179542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 08/02/2024] [Accepted: 08/21/2024] [Indexed: 09/15/2024] Open
Abstract
Low-molecular-weight organic acids (LMWOAs) are essential O-containing metal-binding ligands involved in maintaining metal homeostasis, various metabolic processes, and plant responses to biotic and abiotic stress. Malate, citrate, and oxalate play a crucial role in metal detoxification and transport throughout the plant. This review provides a comparative analysis of the accumulation of LMWOAs in excluders, which store metals mainly in roots, and hyperaccumulators, which accumulate metals mainly in shoots. Modern concepts of the mechanisms of LMWOA secretion by the roots of excluders and hyperaccumulators are summarized, and the formation of various metal complexes with LMWOAs in the vacuole and conducting tissues, playing an important role in the mechanisms of metal detoxification and transport, is discussed. Molecular mechanisms of transport of LMWOAs and their complexes with metals across cell membranes are reviewed. It is discussed whether different endogenous levels of LMWOAs in plants determine their metal tolerance. While playing an important role in maintaining metal homeostasis, LMWOAs apparently make a minor contribution to the mechanisms of metal hyperaccumulation, which is associated mainly with root exudates increasing metal bioavailability and enhanced xylem loading of LMWOAs. The studies of metal-binding compounds may also contribute to the development of approaches used in biofortification, phytoremediation, and phytomining.
Collapse
Affiliation(s)
- Ilya V Seregin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya st., 35, Moscow 127276, Russia
| | - Anna D Kozhevnikova
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya st., 35, Moscow 127276, Russia
| |
Collapse
|
3
|
Singh D, Tripathi A, Mitra R, Bhati J, Rani V, Taunk J, Singh D, Yadav RK, Siddiqui MH, Pal M. Genome-wide identification of MATE and ALMT genes and their expression profiling in mungbean (Vigna radiata L.) under aluminium stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 280:116558. [PMID: 38850702 DOI: 10.1016/j.ecoenv.2024.116558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 06/03/2024] [Accepted: 06/04/2024] [Indexed: 06/10/2024]
Abstract
The Multidrug and toxic compound extrusion (MATE) and aluminium activated malate transporter (ALMT) gene families are involved in response to aluminium (Al) stress. In this study, we identified 48 MATE and 14 ALMT gene families in Vigna radiata genome and classified into 5 (MATE) and 3 (ALMT) clades by phylogenetic analysis. All the VrMATE and VrALMT genes were distributed across mungbean chromosomes. Tandem duplication was the main driving force for evolution and expansion of MATE gene family. Collinearity of mungbean with soybean indicated that MATE gene family is closely linked to Glycine max. Eight MATE transporters in clade 2 were found to be associated with previously characterized Al tolerance related MATEs in various plant species. Citrate exuding motif (CEM) was present in seven VrMATEs of clade 2. Promoter analysis revealed abundant plant hormone and stress responsive cis-elements. Results from quantitative real time-polymerase chain reaction (qRT-PCR) revealed that VrMATE19, VrMATE30 and VrALMT13 genes were markedly up-regulated at different time points under Al stress. Overall, this study offers a new direction for further molecular characterization of the MATE and ALMT genes in mungbean for Al tolerance.
Collapse
Affiliation(s)
- Dharmendra Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India.
| | - Ankita Tripathi
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Raktim Mitra
- Division of Plant Physiology, ICAR, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Jyotika Bhati
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi 110012, India
| | - Varsha Rani
- Department of Agriculture, Meerut Institute of Technology, Meerut 250103, India
| | - Jyoti Taunk
- Division of Plant Physiology, ICAR, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Deepti Singh
- Department of Botany, Meerut College, Meerut 250103, India
| | - Rajendra Kumar Yadav
- Department of Genetics and Plant Breeding, Chandra Shekhar Azad University of Agriculture and Technology, Kanpur 208002, India
| | - Manzer H Siddiqui
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Madan Pal
- Division of Plant Physiology, ICAR, Indian Agricultural Research Institute, New Delhi 110012, India
| |
Collapse
|
4
|
Gao P, Han R, Xu H, Wei Y, Yu Y. Identification of MATE Family and Characterization of GmMATE13 and GmMATE75 in Soybean's Response to Aluminum Stress. Int J Mol Sci 2024; 25:3711. [PMID: 38612522 PMCID: PMC11011378 DOI: 10.3390/ijms25073711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 03/22/2024] [Accepted: 03/23/2024] [Indexed: 04/14/2024] Open
Abstract
The multidrug and toxic compound extrusion (MATE) proteins are coding by a secondary transporter gene family, and have been identified to participate in the modulation of organic acid exudation for aluminum (Al) resistance. The soybean variety Glycine max "Tamba" (TBS) exhibits high Al tolerance. The expression patterns of MATE genes in response to Al stress in TBS and their specific functions in the context of Al stress remain elusive. In this study, 124 MATE genes were identified from the soybean genome. The RNA-Seq results revealed significant upregulation of GmMATE13 and GmMATE75 in TBS upon exposure to high-dose Al3+ treatment and both genes demonstrated sequence homology to citrate transporters of other plants. Subcellular localization showed that both proteins were located in the cell membrane. Transgenic complementation experiments of Arabidopsis mutants, atmate, with GmMATE13 or GmMATE75 genes enhanced the Al tolerance of the plant due to citrate secretion. Taken together, this study identified GmMATE13 and GmMATE75 as citrate transporter genes in TBS, which could improve citrate secretion and enhance Al tolerance. Our findings provide genetic resources for the development of plant varieties that are resistant to Al toxicity.
Collapse
Affiliation(s)
- Pengxiang Gao
- Center for Plant Environmental Sensing, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China;
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China
| | - Rongrong Han
- College of Animal Science and Technology, Southwest University, Chongqing 400715, China; (R.H.); (H.X.); (Y.Y.)
| | - Hui Xu
- College of Animal Science and Technology, Southwest University, Chongqing 400715, China; (R.H.); (H.X.); (Y.Y.)
| | - Yunmin Wei
- Center for Plant Environmental Sensing, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China;
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China
- College of Animal Science and Technology, Southwest University, Chongqing 400715, China; (R.H.); (H.X.); (Y.Y.)
| | - Yongxiong Yu
- College of Animal Science and Technology, Southwest University, Chongqing 400715, China; (R.H.); (H.X.); (Y.Y.)
| |
Collapse
|
5
|
Zheng Z, Gao J, Wang C, Peng H, Zeng J, Chen F. Genome-wide identification and expression pattern analysis of the MATE gene family in carmine radish (Raphanus sativus L.). Gene 2023; 887:147734. [PMID: 37625557 DOI: 10.1016/j.gene.2023.147734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 08/09/2023] [Accepted: 08/22/2023] [Indexed: 08/27/2023]
Abstract
Carmine radish (Raphanus sativus L.) is famousforcontaininganaturalredpigment(redradishpigment) that grown in Fuling, Chongqing City, China. MATE (multidrug and toxic compound extrusion), as an integral member of the multidrug efflux transporter family, has various functions in plants. However, noinformationhasbeenavailableaboutcharacteristicsoftheMATEgenefamily in carmine radish. In this study, total of 85 candidate MATE gene family members classifiedinto 4 groups were identified and foundtobewidelyandrandomlydistributedindifferent genome. Synteny analysis revealed that twenty-one segmental and ten tandem duplications acted as important regulators for the expansion of RsMATE genes. The Ka/Ks ratios of RsMATE indicated that RsMATE may have undergone intense purification in the radish genome. Cis-acting element analysis of RsMATE in the promoter region indicated that RsMATE were mainly related to the abiotic stress response and phytohormone. Quantitative real-time polymerase chain reaction (qRT-PCR) showed that RsMATE40-b, RsMATE16-b and RsMATE13-a genes were significantly expressed under ABA (abscisic acid) and NaCl stress treatments respectively. In addition, the expression patterns of fifteen key RsMATE genes were investigated in 'XCB' (Xichangbai) and 'HX' (Hongxin) roots under Cadmium (Cd) stress for different treatment times using qRT-PCR, of those, RsMATE49-b, RsMATE33 and RsMATE26 transcripts were strongly altered at different time points in XCB responsive to Cd stress,compared to HX. This study will provide valuable insights for studying the functional characterization of the MATE gene in carmine radish and other plants.
Collapse
Affiliation(s)
- Zhangfei Zheng
- School of Biological and Food Engineering, Chongqing Three Gorges University, WanZhou, 404100 Chongqing, China; School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China
| | - Jian Gao
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China.
| | - Chuanyi Wang
- School of Biological and Food Engineering, Chongqing Three Gorges University, WanZhou, 404100 Chongqing, China; School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China
| | - Hua Peng
- Research Centre for Tourism Agriculture Development, Sichuan Tourism College, Chengdu 610100, Sichuan, China
| | - Jing Zeng
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China
| | - Fabo Chen
- School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China
| |
Collapse
|
6
|
Yan L, Riaz M, Li S, Cheng J, Jiang C. Harnessing the power of exogenous factors to enhance plant resistance to aluminum toxicity; a critical review. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 203:108064. [PMID: 37783071 DOI: 10.1016/j.plaphy.2023.108064] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 09/11/2023] [Accepted: 09/27/2023] [Indexed: 10/04/2023]
Abstract
Aluminum (Al) is the most prevalent element in the earth crust and is toxic to plants in acidic soils. However, plants can address Al toxicity through external exclusion (which prevents Al from entering roots) and internal detoxification (which counterbalances the toxic-Al absorbed by roots). Nowadays, certain categories of exogenously added regulatory factors (EARF), such as nutritional elements, organic acids, amino acids, phytohormones, or biochar, etc. play a critical role in reducing the bioavailability/toxicity of Al in plants. Numerous studies suggest that regulating factors against Al toxicity mediate the expression of Al-responsive genes and transcription factors, thereby regulating the secretion of organic acids, alkalizing rhizosphere pH, modulating cell wall (CW) modifications, improving antioxidant defense systems, and promoting the compartmentalization of non-toxic Al within intracellular. This review primarily discusses recent and older published papers to demonstrate the basic concepts of Al phytotoxicity. Furthermore, we provide a comprehensive explanation of the crucial roles of EARF-induced responses against Al toxicity in plants. This information may serve as a foundation for improving plant resistance to Al and enhancing the growth of susceptible species in acidic soils. And this review holds significant theoretical significance for EARF to improve the quality of acidic soils cultivated land, increase crop yield and quality, and ensure food security.
Collapse
Affiliation(s)
- Lei Yan
- Institute of Biomedical Engineering, College of Life Science, Qingdao University, Qingdao, 266071, China.
| | - Muhammad Riaz
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei, 430070, China; College of Resources and Environment, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.
| | - Shuang Li
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.
| | - Jin Cheng
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.
| | - Cuncang Jiang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.
| |
Collapse
|
7
|
Liu Q, Cheng L, Nian H, Jin J, Lian T. Linking plant functional genes to rhizosphere microbes: a review. PLANT BIOTECHNOLOGY JOURNAL 2023; 21:902-917. [PMID: 36271765 PMCID: PMC10106864 DOI: 10.1111/pbi.13950] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/09/2022] [Accepted: 10/16/2022] [Indexed: 05/04/2023]
Abstract
The importance of rhizomicrobiome in plant development, nutrition acquisition and stress tolerance is unquestionable. Relevant plant genes corresponding to the above functions also regulate rhizomicrobiome construction. Deciphering the molecular regulatory network of plant-microbe interactions could substantially contribute to improving crop yield and quality. Here, the plant gene-related nutrient uptake, biotic and abiotic stress resistance, which may influence the composition and function of microbial communities, are discussed in this review. In turn, the influence of microbes on the expression of functional plant genes, and thereby plant growth and immunity, is also reviewed. Moreover, we have specifically paid attention to techniques and methods used to link plant functional genes and rhizomicrobiome. Finally, we propose to further explore the molecular mechanisms and signalling pathways of microbe-host gene interactions, which could potentially be used for managing plant health in agricultural systems.
Collapse
Affiliation(s)
- Qi Liu
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro‐BioresourcesSouth China Agricultural UniversityGuangzhouChina
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of AgricultureSouth China Agricultural UniversityGuangzhouChina
| | - Lang Cheng
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro‐BioresourcesSouth China Agricultural UniversityGuangzhouChina
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of AgricultureSouth China Agricultural UniversityGuangzhouChina
| | - Hai Nian
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro‐BioresourcesSouth China Agricultural UniversityGuangzhouChina
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of AgricultureSouth China Agricultural UniversityGuangzhouChina
| | - Jian Jin
- Northeast Institute of Geography and AgroecologyChinese Academy of SciencesHarbinChina
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscienceLa Trobe UniversityBundooraVictoriaAustralia
| | - Tengxiang Lian
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro‐BioresourcesSouth China Agricultural UniversityGuangzhouChina
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of AgricultureSouth China Agricultural UniversityGuangzhouChina
| |
Collapse
|
8
|
Wang J, Su C, Cui Z, Huang L, Gu S, Jiang S, Feng J, Xu H, Zhang W, Jiang L, Zhao M. Transcriptomics and metabolomics reveal tolerance new mechanism of rice roots to Al stress. Front Genet 2023; 13:1063984. [PMID: 36704350 PMCID: PMC9871393 DOI: 10.3389/fgene.2022.1063984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 12/15/2022] [Indexed: 01/12/2023] Open
Abstract
The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes Os02g0770800 and Os06g0521900 may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants.
Collapse
|
9
|
Islam NS, Duwadi K, Chen L, Pajak A, McDowell T, Marsolais F, Dhaubhadel S. Global analysis of common bean multidrug and toxic compound extrusion transporters (PvMATEs): PvMATE8 and pinto bean seed coat darkening. FRONTIERS IN PLANT SCIENCE 2022; 13:1046597. [PMID: 36438155 PMCID: PMC9686396 DOI: 10.3389/fpls.2022.1046597] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 10/21/2022] [Indexed: 06/16/2023]
Abstract
In common bean (Phaseolus vulgaris L.), postharvest seed coat darkening is an undesirable trait that affects crop value. The increased accumulation of proanthocyanidins (PAs) in the seed coat results in darker seeds in many market classes of colored beans after harvest. The precursors of PAs are synthesized in the cytoplasm, and subsequently get glycosylated and then transported to the vacuoles where polymerization occurs. Thus, vacuolar transporters play an important role in the accumulation of PAs. Here, we report that common bean genome contains 59 multidrug and toxic compound extrusion genes (PvMATEs). Phylogenetic analysis of putative PvMATEs with functionally characterized MATEs from other plant species categorized them into substrate-specific clades. Our data demonstrate that a vacuolar transporter PvMATE8 is expressed at a higher level in the pinto bean cultivar CDC Pintium (regular darkening) compared to 1533-15 (slow darkening). PvMATE8 localizes in the vacuolar membrane and rescues the PA deficient (tt12) mutant phenotype in Arabidopsis thaliana. Analysis of PA monomers in transgenic seeds together with wild-type and mutants suggests a possible feedback regulation of PA biosynthesis and accumulation. Identification of PvMATE8 will help better understand the mechanism of PA accumulation in common bean.
Collapse
Affiliation(s)
- Nishat S. Islam
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Kishor Duwadi
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
| | - Ling Chen
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
| | - Aga Pajak
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
| | - Tim McDowell
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
| | - Frédéric Marsolais
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Sangeeta Dhaubhadel
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
- Department of Biology, University of Western Ontario, London, ON, Canada
| |
Collapse
|
10
|
Wang Z, Liu Y, Cui W, Gong L, He Y, Zhang Q, Meng X, Yang Z, You J. Characterization of GmMATE13 in its contribution of citrate efflux and aluminum resistance in soybeans. FRONTIERS IN PLANT SCIENCE 2022; 13:1027560. [PMID: 36340364 PMCID: PMC9634752 DOI: 10.3389/fpls.2022.1027560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 09/27/2022] [Indexed: 06/16/2023]
Abstract
Citrate exudation mediated by a citrate transporter of the MATE protein family is critical for resisting aluminum (Al) toxicity in soybeans. However, the expression patterns of citrate transporter genes differ under Al stress. Thus, exploring the responsive pattern of GmMATEs in response to Al stress is of great importance to understand the Al resistance mechanism in soybeans. In the present study, the phylogenetic analysis, transcriptionally expressed pattern, and function of GmMATE13 were investigated. The results show that soybean GmMATE13 is highly homologous to known citrate transporter proteins from other plants. Under Al exposure, the transcript abundance of GmMATE13 was increased during a 24 h Al treatment period. The expression of GmMATE13 is specifically induced by Al exposure, but not by the status of Fe, Cu, Cd, or La. Moreover, it was also highly increased when soybean seedlings were grown on acidic soil with a high Al content. Subcellular localization showed that GmMATE13 was localized on the plasma membrane when it was transiently expressed in Arabidopsis protoplasts. Investigation of tissue localization of GmMATE13 expression by investigating GUS activity staining under control of the GmMATE13 promoter showed that it was mainly expressed in the central cylinder in the root tips of the soybean under Al-free conditions, yet extended to cortical and epidermis cells under Al stress. Finally, overexpressing GmMATE13 in soybean hairy roots enhanced Al resistance by increasing citrate efflux. Collectively, we conclude that GmMATE13 is a promising candidate to improve the resistance of soybean to Al toxicity in acidic soil.
Collapse
|
11
|
Zhang L, Dong D, Wang J, Wang Z, Zhang J, Bai RY, Wang X, Rubio Wilhelmi MDM, Blumwald E, Zhang N, Guo YD. A zinc finger protein SlSZP1 protects SlSTOP1 from SlRAE1-mediated degradation to modulate aluminum resistance. THE NEW PHYTOLOGIST 2022; 236:165-181. [PMID: 35739643 DOI: 10.1111/nph.18336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
In acidic soils, aluminum (Al) toxicity is the main factor inhibiting plant root development and reducing crops yield. STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) was a critical factor in detoxifying Al stress. Under Al stress, STOP1 expression was not induced, although STOP1 protein accumulated, even in the presence of RAE1 (STOP1 DEGRADATION E3-LIGASE). How the Al stress triggers and stabilises the accumulation of STOP1 is still unknown. Here, we characterised SlSTOP1-interacting zinc finger protein (SlSZP1) using a yeast-two-hybrid screening, and generated slstop1, slszp1 and slstop1/slszp1 knockout mutants using clustered regularly interspaced short palindromic repeats (CRISPR) in tomato. SlSZP1 is induced by Al stress but it is not regulated by SlSTOP1. The slstop1, slszp1 and slstop1/slszp1 knockout mutants exhibited hypersensitivity to Al stress. The expression of SlSTOP1-targeted genes, such as SlRAE1 and SlASR2 (ALUMINUM SENSITIVE), was inhibited in both slstop1 and slszp1 mutants, but not directly regulated by SlSZP1. Furthermore, the degradation of SlSTOP1 by SlRAE1 was prevented by SlSZP1. Al stress increased the accumulation of SlSTOP1 in wild-type (WT) but not in slszp1 mutants. The overexpression of either SlSTOP1 or SlSZP1 did not enhance plant Al resistance. Altogether, our results show that SlSZP1 is an important factor for protecting SlSTOP1 from SlRAE1-mediated degradation.
Collapse
Affiliation(s)
- Lei Zhang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Danhui Dong
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Jinfang Wang
- National Watermelon and Melon Improvement Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097, China
| | - Zhirong Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Jiaojiao Zhang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Ru-Yue Bai
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| | - Xuewei Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| | | | - Eduardo Blumwald
- Department of Plant Sciences, University of California, Davis, CA, 95616, USA
| | - Na Zhang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Sanya Institute of China Agricultural University, Sanya, 572000, China
| | - Yang-Dong Guo
- College of Horticulture, China Agricultural University, Beijing, 100193, China
| |
Collapse
|
12
|
Du H, Raman H, Kawasaki A, Perera G, Diffey S, Snowdon R, Raman R, Ryan PR. A genome-wide association study (GWAS) identifies multiple loci linked with the natural variation for Al 3+ resistance in Brassica napus. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:845-860. [PMID: 35753342 DOI: 10.1071/fp22073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
Acid soils limit yields of many important crops including canola (Brassica napus ), Australia's third largest crop. Aluminium (Al3+ ) stress is the main cause of this limitation primarily because the toxic Al3+ present inhibits root growth. Breeding programmes do not target acid-soil tolerance in B. napus because genetic variation and convincing quantitative trait loci have not been reported. We conducted a genome-wide association study (GWAS) using the BnASSYST diversity panel of B. napus genotyped with 35 729 high-quality DArTseq markers. We screened 352 B. napus accessions in hydroponics with and without a toxic concentration of AlCl3 (12μM, pH 4.3) for 12days and measured shoot biomass, root biomass, and root length. By accounting for both population structure and kinship matrices, five significant quantitative trait loci for different measures of resistance were identified using incremental Al3+ resistance indices. Within these quantitative trait locus regions of B. napus , 40 Arabidopsis thaliana gene orthologues were identified, including some previously linked with Al3+ resistance. GWAS analysis indicated that multiple genes are responsible for the natural variation in Al3+ resistance in B. napus . The results provide new genetic resources and markers to enhance that Al3+ resistance of B. napus germplasm via genomic and marker-assisted selection.
Collapse
Affiliation(s)
- Hanmei Du
- CSIRO Agriculture and Food, Canberra, ACT 2601, Australia; and Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China, Maize Research Institute, Sichuan Agricultural University, Chengdu, China
| | - Harsh Raman
- NSW Department of Primary Industries, Wagga Wagga, NSW 2650, Australia
| | - Akitomo Kawasaki
- CSIRO Agriculture and Food, Canberra, ACT 2601, Australia; and NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Advanced Gene Technology Centre, Menangle, NSW 2568, Australia
| | - Geetha Perera
- CSIRO Agriculture and Food, Canberra, ACT 2601, Australia
| | | | - Rod Snowdon
- Justus Liebig University, Department of Plant Breeding Institute, Giessen 35391, Germany
| | - Rosy Raman
- NSW Department of Primary Industries, Wagga Wagga, NSW 2650, Australia
| | - Peter R Ryan
- CSIRO Agriculture and Food, Canberra, ACT 2601, Australia
| |
Collapse
|
13
|
Liu S, Li Y, Fang H, Huang B, Zhao C, Sun C, Li S, Chen K. Genome-wide identification and expression analysis of MATE gene family in citrus fruit (Citrus clementina). Genomics 2022; 114:110446. [PMID: 35953015 DOI: 10.1016/j.ygeno.2022.110446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 07/10/2022] [Accepted: 08/03/2022] [Indexed: 11/04/2022]
Abstract
Multidrug and toxic compound extrusion (MATE) proteins are a class of secondary active multidrug transporters. In plants, this family has significantly expanded and is involved in numerous plant physiological processes. Although MATE proteins have been identified in an increasing number of species, the understanding about this family in citrus remains unclear. In this study, a total of 69 MATE transporters were identified in the citrus genome (Citrus clementina) and classified into four groups by phylogenetic analysis. Tandem and segmental duplication events were the main causes of the citrus MATE family expansion. RNA-seq and qRT-PCR analyses were performed during citrus fruit development. The results indicated that CitMATE genes showed specific expression profiles in citrus peels and flesh at different developmental stages. Combined with the variations of flavonoids and citrate levels in citrus fruit, we suggested that CitMATE43 and CitMATE66 may be involved in the transport process of flavonoids and citrate in citrus fruit, respectively. In addition, two flavonoids positive regulators, CitERF32 and CitERF33, both directly bind to and activated the CitMATE43 promoter. Our results provide comprehensive information on citrus MATE genes and valuable understanding for the flavonoids and citrate metabolism in citrus fruit.
Collapse
Affiliation(s)
- Shengchao Liu
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Yinchun Li
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Heting Fang
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Boyu Huang
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Chenning Zhao
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Chongde Sun
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| | - Shaojia Li
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China.
| | - Kunsong Chen
- College of Agriculture & Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China; The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, PR China
| |
Collapse
|
14
|
Han M, Yang H, Yu G, Jiang P, You S, Zhang L, Lin H, Liu J, Shu Y. Application of Non-invasive Micro-test Technology (NMT) in environmental fields: A comprehensive review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 240:113706. [PMID: 35659702 DOI: 10.1016/j.ecoenv.2022.113706] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 05/22/2022] [Accepted: 05/24/2022] [Indexed: 06/15/2023]
Abstract
Non-invasive Micro-test Technology (NMT) is a selective microelectrode technique which can detect the flux rates and three-dimensional motion directions of ions or molecules into and out of living organisms in situ without damaging the sample. It has the advantages of maintaining sample integrity, high temporal and spatial resolution, and being able to measure multiple sites simultaneously. In this paper we provide a comprehensive review on the development of NMT in recent years. Its principles, characteristics, and the differences with other microelectrode techniques are introduced. We discuss the applications of NMT in the field of phytoremediation, plant resistance, water quality monitoring, and toxicity mechanisms of heavy metals on organisms. Furthermore, the challenges and future prospects of NMT in the environmental field are presented.
Collapse
Affiliation(s)
- Mengxuan Han
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China
| | - Huan Yang
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China
| | - Guo Yu
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China.
| | - Pingping Jiang
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China
| | - Shaohong You
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China; Technical Innovation Center of Mine Geological Environmental Restoration Engineering in Southern Karst Area, MNR, Guilin, China.
| | - Lei Zhang
- Department of Civil and Environmental Engineering, University of Alberta, Edmonton, Canada
| | - Hua Lin
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China
| | - Jie Liu
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China; Technical Innovation Center of Mine Geological Environmental Restoration Engineering in Southern Karst Area, MNR, Guilin, China
| | - Yi Shu
- Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin, China
| |
Collapse
|
15
|
Baloch FS, Nadeem MA, Sönmez F, Habyarimana E, Mustafa Z, Karaköy T, Cömertpay G, Alsaleh A, Çiftçi V, Sun S, Chung G, Chung YS. Magnesium- a Forgotten Element: Phenotypic Variation and Genome Wide Association Study in Turkish Common Bean Germplasm. Front Genet 2022; 13:848663. [PMID: 35586571 PMCID: PMC9108430 DOI: 10.3389/fgene.2022.848663] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 02/21/2022] [Indexed: 11/16/2022] Open
Abstract
Magnesium (Mg) is the fourth most abundant element in the human body and plays the role of cofactor for more than 300 enzymatic reactions. In plants, Mg is involved in various key physiological and biochemical processes like growth, development, photophosphorylation, chlorophyll formation, protein synthesis, and resistance to biotic and abiotic stresses. Keeping in view the importance of this element, the present investigation aimed to explore the Mg contents diversity in the seeds of Turkish common bean germplasm and to identify the genomic regions associated with this element. A total of 183 common bean accessions collected from 19 provinces of Turkey were used as plant material. Field experiments were conducted according to an augmented block design during 2018 in two provinces of Turkey, and six commercial cultivars were used as a control group. Analysis of variance depicted that Mg concentration among common bean accessions was statistically significant (p < 0.05) within each environment, however genotype × environment interaction was non-significant. A moderate level (0.60) of heritability was found in this study. Overall mean Mg contents for both environments varied from 0.33 for Nigde-Dermasyon to 1.52 mg kg−1 for Nigde-Derinkuyu landraces, while gross mean Mg contents were 0.92 mg kg−1. At the province level, landraces from Bolu were rich while the landraces from Bitlis were poor in seed Mg contents respectively. The cluster constellation plot divided the studied germplasm into two populations on the basis of their Mg contents. Marker-trait association was performed using a mixed linear model (Q + K) with a total of 7,900 DArTseq markers. A total of six markers present on various chromosomes (two at Pv01, and one marker at each chromosome i.e., Pv03, Pv07, Pv08, Pv11) showed statistically significant association for seed Mg contents. Among these identified markers, the DArT-3367607 marker present on chromosome Pv03 contributed to maximum phenotypic variation (7.5%). Additionally, this marker was found within a narrow region of previously reported markers. We are confident that the results of this study will contribute significantly to start common bean breeding activities using marker assisted selection regarding improved Mg contents.
Collapse
Affiliation(s)
- Faheem Shehzad Baloch
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
- *Correspondence: Faheem Shehzad Baloch, ; Yong Suk Chung,
| | - Muhammad Azhar Nadeem
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Ferit Sönmez
- Department of Seed Science and Technology, Faculty of Agriculture, Bolu Abant Izzet Baysal University, Bolu, Turkey
| | - Ephrem Habyarimana
- International Crops Research Institute for the Semi-Arid Tropics, Patancheru, India
| | - Zemran Mustafa
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Tolga Karaköy
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Gönül Cömertpay
- Eastern Mediterranean Agricultural Research Institute, Adana, Turkey
| | - Ahmad Alsaleh
- Molecular Genetic Laboratory, Science and Technology Application and Research Center, Institute for Hemp Research, Yozgat Bozok University, Yozgat, Turkey
| | - Vahdettin Çiftçi
- Department of Field Crops, Faculty of Agriculture, Bolu Abant Izzet Baysal University, Bolu, Turkey
| | - Sangmi Sun
- Department of Biotechnology, Chonnam National University, Chonnam, South Korea
| | - Gyuhwa Chung
- Department of Biotechnology, Chonnam National University, Chonnam, South Korea
| | - Yong Suk Chung
- Department of Plant Resources and Environment, Jeju National University, Jeju, South Korea
- *Correspondence: Faheem Shehzad Baloch, ; Yong Suk Chung,
| |
Collapse
|
16
|
Amiloride is a suitable fluorescent substrate for the study of the drug transporter human multidrug and toxin extrusion 1 (MATE1). Biochem Biophys Res Commun 2022; 592:113-118. [PMID: 35042121 DOI: 10.1016/j.bbrc.2022.01.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 01/06/2022] [Indexed: 11/24/2022]
Abstract
Human multidrug and toxin extrusion 1 (MATE1; SLC47A1) is highly expressed in the kidneys and the liver. It plays a significant role in drug and endogenous compound disposition, and therefore, a rapid evaluation of its inhibition is important for drug development and for the understanding of renal and hepatic physiology. Amiloride is a potassium-sparing diuretic used for treating hypertension; it also demonstrates strong fluorescence in organic solvent or detergent solutions. In this study, we investigated the transport characteristics of amiloride by human MATE1. Cellular accumulation of amiloride was evaluated in control vector- or MATE1-transfected HEK293 cells. Cells were lysed with 1% sodium dodecyl sulfate, and fluorescence was measured using a microplate reader at wavelengths of 364ex and 409em. With ammonium prepulse-induced intracellular acidification, MATE1 transported amiloride at an extracellular pH of 7.4. The uptake demonstrated an overshoot phenomenon and saturated, with the Km and Vmax being 23.5 μM and 1.01 nmol/mg/min, respectively. MATE1-mediated amiloride transport also presented with a bell-shaped pH profile that reached a maximum pH value of 7.4. The inhibitor sensitivity of MATE1-facilitated amiloride transport was similar to those of known substrates, such as tetraethylammonium and metformin. Among the tested inhibitors, pyrimethamine demonstrated the most potent inhibition with an IC50 value of 0.266 μM. Furthermore, MATE1 was found to be inhibited by fampridine, which was previously considered to be a non-inhibitor of MATE1. This study demonstrates that amiloride is a suitable fluorescent substrate for the in vitro study of the transport activity of MATE1.
Collapse
|
17
|
Lin Y, Liu G, Xue Y, Guo X, Luo J, Pan Y, Chen K, Tian J, Liang C. Functional Characterization of Aluminum (Al)-Responsive Membrane-Bound NAC Transcription Factors in Soybean Roots. Int J Mol Sci 2021; 22:12854. [PMID: 34884659 PMCID: PMC8657865 DOI: 10.3390/ijms222312854] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 11/17/2021] [Accepted: 11/20/2021] [Indexed: 11/16/2022] Open
Abstract
The membrane-bound NAC transcription (NTL) factors have been demonstrated to participate in the regulation of plant development and the responses to multiple environmental stresses. This study is aimed to functionally characterize soybean NTL transcription factors in response to Al-toxicity, which is largely uncharacterized. The qRT-PCR assays in the present study found that thirteen out of fifteen GmNTL genes in the soybean genome were up-regulated by Al toxicity. However, among the Al-up-regulated GmNTLs selected from six duplicate gene pairs, only overexpressing GmNTL1, GmNTL4, and GmNTL10 could confer Arabidopsis Al resistance. Further comprehensive functional characterization of GmNTL4 showed that the expression of this gene in response to Al stress depended on root tissues, as well as the Al concentration and period of Al treatment. Overexpression of GmNTL4 conferred Al tolerance of transgenic Arabidopsis in long-term (48 and 72 h) Al treatments. Moreover, RNA-seq assay identified 517 DEGs regulated by GmNTL4 in Arabidopsis responsive to Al stress, which included MATEs, ALMTs, PMEs, and XTHs. These results suggest that the function of GmNTLs in Al responses is divergent, and GmNTL4 might confer Al resistance partially by regulating the expression of genes involved in organic acid efflux and cell wall modification.
Collapse
Affiliation(s)
- Yan Lin
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Guoxuan Liu
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Yingbing Xue
- Department of Resources and Environmental Sciences, College of Chemistry and Environment, Guangdong Ocean University, Zhanjiang 524088, China;
| | - Xueqiong Guo
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Jikai Luo
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Yaoliang Pan
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Kang Chen
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Jiang Tian
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Cuiyue Liang
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| |
Collapse
|
18
|
Du H, Ryan PR, Liu C, Li H, Hu W, Yan W, Huang Y, He W, Luo B, Zhang X, Gao S, Zhou S, Zhang S. ZmMATE6 from maize encodes a citrate transporter that enhances aluminum tolerance in transgenic Arabidopsis thaliana. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 311:111016. [PMID: 34482919 DOI: 10.1016/j.plantsci.2021.111016] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 07/11/2021] [Accepted: 08/03/2021] [Indexed: 06/13/2023]
Abstract
The yields of cereal crops grown on acidic soils are often reduced by aluminum (Al) toxicity because the prevalence of toxic Al3+ cations increases as pH falls below 5.0. The Al-dependent release of citrate from resistant lines of maize is controlled by ZmMATE1 which encodes a multidrug and toxic compound extrusion (MATE) transporter protein. ZmMATE6 is another member of this family in maize whose expression is also increased by Al treatment. We investigated the function of this gene in more detail to determine whether it also contributes to Al resistance. Quantitative RT-PCR measurements found that ZmMATE6 was expressed in the roots and leaves of Al-resistant and sensitive inbred lines. Treatment with Al induced ZmMATE6 expression in all tissues but several other divalent or trivalent cations tested had no effect on expression. This expression pattern and the induction by Al treatment was confirmed in ZmMATE6 promoter-β-glucuronidase fusion lines. Heterogeneous expression of ZmMATE6 displayed a greater Al-activated release of citrate from the roots and was significantly resistant to Al toxicity than controls. This was associated with reduced accumulation of Al in the root tissues. Our results demonstrated that ZmMATE6 expression is induced by Al and functions as a citrate transporter.
Collapse
Affiliation(s)
- Hanmei Du
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Peter R Ryan
- CSIRO Agriculture and Food, GPO Box 1700, Canberra, ACT 2601, Australia
| | - Chan Liu
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Hongjie Li
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Wanpeng Hu
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Weina Yan
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Ying Huang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Wenzhu He
- Crop Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China
| | - Bowen Luo
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Xiao Zhang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Shibin Gao
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Shufeng Zhou
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Suzhi Zhang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Wenjiang, 611130, China.
| |
Collapse
|
19
|
Citric Acid-Mediated Abiotic Stress Tolerance in Plants. Int J Mol Sci 2021; 22:ijms22137235. [PMID: 34281289 PMCID: PMC8268203 DOI: 10.3390/ijms22137235] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 06/26/2021] [Accepted: 06/27/2021] [Indexed: 01/07/2023] Open
Abstract
Several recent studies have shown that citric acid/citrate (CA) can confer abiotic stress tolerance to plants. Exogenous CA application leads to improved growth and yield in crop plants under various abiotic stress conditions. Improved physiological outcomes are associated with higher photosynthetic rates, reduced reactive oxygen species, and better osmoregulation. Application of CA also induces antioxidant defense systems, promotes increased chlorophyll content, and affects secondary metabolism to limit plant growth restrictions under stress. In particular, CA has a major impact on relieving heavy metal stress by promoting precipitation, chelation, and sequestration of metal ions. This review summarizes the mechanisms that mediate CA-regulated changes in plants, primarily CA’s involvement in the control of physiological and molecular processes in plants under abiotic stress conditions. We also review genetic engineering strategies for CA-mediated abiotic stress tolerance. Finally, we propose a model to explain how CA’s position in complex metabolic networks involving the biosynthesis of phytohormones, amino acids, signaling molecules, and other secondary metabolites could explain some of its abiotic stress-ameliorating properties. This review summarizes our current understanding of CA-mediated abiotic stress tolerance and highlights areas where additional research is needed.
Collapse
|
20
|
Ali E, Saand MA, Khan AR, Shah JM, Feng S, Ming C, Sun P. Genome-wide identification and expression analysis of detoxification efflux carriers (DTX) genes family under abiotic stresses in flax. PHYSIOLOGIA PLANTARUM 2021; 171:483-501. [PMID: 32270877 DOI: 10.1111/ppl.13105] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 03/31/2020] [Accepted: 04/04/2020] [Indexed: 05/19/2023]
Abstract
The detoxification efflux carriers (DTX)/multidrug and toxic compound extrusion (MATE) transporters encompass an ancient gene family of secondary transporters involved in the process of plant detoxification. A genome-wide analysis of these transporters was carried out in order to better understand the transport of secondary metabolites in flaxseed genome (Linum usitassimum). A total of 73 genes coding for DTX/MATE transporters were identified. Gene structure, protein domain and motif organization were found to be notably conserved over the distinct phylogenetic groups, showing the evolutionary significant role of each class. Gene ontology (GO) annotation revealed a link to transporter activities, response to stimulus and localizations. The presence of various hormone and stress-responsive cis-regulatory elements in promoter regions could be directly correlated with the alteration of their transcripts. Tertiary structure showed conservation for pore size and constrains in the pore, which indicate their involvement in the exclusion of toxic substances from the cell. MicroRNA target analysis revealed that LuDTXs genes were targeted by different classes of miRNA families. Twelve LuDTX genes were chosen for further quantitative real-time polymerase chain reaction analysis in response to cold, salinity and cadmium stress at 0, 6, 12 and 24 hours after treatment. Altogether, the identified members of the DTX gene family, their expression profile, phylogenetic and miRNAs analysis might provide opportunities for future functional validation of this important gene family in flax.
Collapse
Affiliation(s)
- Essa Ali
- Department of Food Science and Technology, Zhejiang University of Technology, Zhejiang, 310014, China
| | - Mumtaz Ali Saand
- Department of Botany, Shah Abdul Latif University, Sindh, 66020, Pakistan
- Hainan Key Laboratory of Tropical Oil Crops Biology/Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, 571339, China
| | - Ali Raza Khan
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | | | - Simin Feng
- Department of Food Science and Technology, Zhejiang University of Technology, Zhejiang, 310014, China
| | - Cai Ming
- Department of Food Science and Technology, Zhejiang University of Technology, Zhejiang, 310014, China
| | - Peilong Sun
- Department of Food Science and Technology, Zhejiang University of Technology, Zhejiang, 310014, China
| |
Collapse
|
21
|
Recent Advances in Understanding Mechanisms of Plant Tolerance and Response to Aluminum Toxicity. SUSTAINABILITY 2021. [DOI: 10.3390/su13041782] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Aluminum (Al) toxicity is a major environmental stress that inhibits plant growth and development. There has been impressive progress in recent years that has greatly increased our understanding of the nature of Al toxicity and its mechanisms of tolerance. This review describes the transcription factors (TFs) and plant hormones involved in the adaptation to Al stress. In particular, it discusses strategies to confer plant resistance to Al stress, such as transgenic breeding, as well as small molecules and plant growth-promoting rhizobacteria (PGPRs) to alleviate Al toxicity. This paper provides a theoretical basis for the enhancement of plant production in acidic soils.
Collapse
|
22
|
Ogbonna AC, Braatz de Andrade LR, Rabbi IY, Mueller LA, Jorge de Oliveira E, Bauchet GJ. Large-scale genome-wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:754-770. [PMID: 33164279 PMCID: PMC7898387 DOI: 10.1111/tpj.15071] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 10/18/2020] [Accepted: 10/28/2020] [Indexed: 05/11/2023]
Abstract
Manihot esculenta (cassava) is a root crop originating from South America that is a major staple in the tropics, including in marginal environments. This study focused on South American and African germplasm and investigated the genetic architecture of hydrogen cyanide (HCN), a major component of root quality. HCN, representing total cyanogenic glucosides, is a plant defense component against herbivory but is also toxic for human consumption. We genotyped 3354 landraces and modern breeding lines originating from 26 Brazilian states and 1389 individuals were phenotypically characterized across multi-year trials for HCN. All plant material was subjected to high-density genotyping using genotyping by sequencing. We performed genome-wide association mapping to characterize the genetic architecture and gene mapping of HCN. Field experiments revealed strong broad- and narrow-sense trait heritability (0.82 and 0.41, respectively). Two major loci were identified, encoding for an ATPase and a MATE protein, and contributing up to 7 and 30% of the HCN concentration in roots, respectively. We developed diagnostic markers for breeding applications, validated trait architecture consistency in African germplasm and investigated further evidence for the domestication of sweet and bitter cassava. Fine genomic characterization revealed: (i) the major role played by vacuolar transporters in regulating HCN content; (ii) the co-domestication of sweet and bitter cassava major alleles are dependent upon geographical zone; and (iii) the major loci allele for high HCN in M. esculenta Crantz seems to originate from its ancestor, M. esculenta subsp. flabellifolia. Taken together, these findings expand our insights into cyanogenic glucosides in cassava roots and its glycosylated derivatives in plants.
Collapse
Affiliation(s)
- Alex C. Ogbonna
- Cornell University135 Plant Science BuildingIthacaNY14850USA
- Boyce Thompson Institute533 Tower RdIthacaNY14853USA
| | | | - Ismail Y. Rabbi
- International Institute of Tropical AgriculturePMB 5320, Oyo RoadIbadanOyo State200001Nigeria
| | - Lukas A. Mueller
- Cornell University135 Plant Science BuildingIthacaNY14850USA
- Boyce Thompson Institute533 Tower RdIthacaNY14853USA
| | - Eder Jorge de Oliveira
- Embrapa Mandioca e FruticulturaRua Embrapa s/nº, Caixa Postal 007Cruz das AlmasBACEP: 44380‐000Brazil
| | | |
Collapse
|
23
|
Aioub AAA, Zuo Y, Li Y, Qie X, Zhang X, Essmat N, Wu W, Hu Z. Transcriptome analysis of Plantago major as a phytoremediator to identify some genes related to cypermethrin detoxification. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:5101-5115. [PMID: 32954451 DOI: 10.1007/s11356-020-10774-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 09/08/2020] [Indexed: 06/11/2023]
Abstract
Cypermethrin (CYP) is a toxic manmade chemical compound belonging to pyrethroid insecticides contaminating the environment. Plantago major (PM) has numerous excellent advantages like high biomass yield and great stress tolerance, which make it able to increase the efficacy of phytoremediation. So far, no study has directly or indirectly made a transcriptome analysis (RNA-seq) of PM under CYP stress. The aim of this study is to identify the genes in PM related to CYP detoxification (10 μg mL-1) and compared with control. In this study, BGISEQ-500 high-throughput sequencing technology independently developed by BGI was used to sequence the transcriptome of P. major. Six libraries were constructed including (CK_1, CK_2, and CK_3) and (CYP_1, CYP_2, and CYP_3) were sequenced for transcripts involved in CYP detoxification. Our data showed that de novo assembly generated 138,806 unigenes with an average length of 1129 bp. Analyzing the annotation results of the KEGG database between the samples revealed 37,177 differentially expressed genes (DEGs), 18,062 down- and 19,115 upregulated under CYP treatment compared with control. A set of 107 genes of cytochrome P450 (Cyt P450), 43 genes of glutathione S-transferases (GST), 25 genes of glycosyltransferases (GTs), 113 genes from ABC transporters, 21 genes from multidrug and toxin efflux (MATE), 11 genes from oligopeptide transporter (OPT), and 3 genes of metallothioneins (MT) were upregulated notably. By using quantitative real-time PCR (qRT-PCR), the results of gene expression for 12 randomly selected DEGs were confirmed, showing the different patterns of response to CYP in PM tissues. Furthermore, the enzyme activity of Cyt P450 and GST in PM under CYP stress was significantly increased in roots and leaves than in control. This study introduces a clue to understand the metabolic pathways of plants used in phytoremediation by identifying the highly expressed genes related to phytoremediation which would be utilized to enhance pesticide detoxification and reduce pollution problem.
Collapse
Affiliation(s)
- Ahmed A A Aioub
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Plant Protection Department, Faculty of Agriculture, Zagazig University, Zagazig, 44511, Egypt
| | - Yayun Zuo
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China
| | - Yankai Li
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China
| | - Xingtao Qie
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China
| | - Xianxia Zhang
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China
| | - Nariman Essmat
- Department of Pharmacology and Toxicology, Faculty of Pharmacy, Zagazig University, Zagazig, 44519, Egypt
| | - Wenjun Wu
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China
| | - Zhaonong Hu
- Institute of Pesticide Science, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
- Provincial Key Laboratory for Botanical Pesticide R & D of Shaanxi, Yangling, 712100, Shaanxi, China.
- Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Yangling, 712100, Shaanxi, China.
| |
Collapse
|
24
|
Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum. PLANTS 2020; 9:plants9111448. [PMID: 33120967 PMCID: PMC7716203 DOI: 10.3390/plants9111448] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 10/22/2020] [Accepted: 10/26/2020] [Indexed: 12/11/2022]
Abstract
Multidrug and Toxic Compound Extrusion (MATE) proteins are essential transporters that extrude metabolites and participate in plant development and the detoxification of toxins. Little is known about the MATE gene family in the Solanaceae, which includes species that produce a broad range of specialized metabolites. Here, we identified and analyzed the complement of MATE genes in pepper (Capsicum annuum) and potato (Solanum tuberosum). We classified all MATE genes into five groups based on their phylogenetic relationships and their gene and protein structures. Moreover, we discovered that tandem duplication contributed significantly to the expansion of the pepper MATE family, while both tandem and segmental duplications contributed to the expansion of the potato MATE family, indicating that MATEs took distinct evolutionary paths in these two Solanaceous species. Analysis of ω values showed that all potato and pepper MATE genes experienced purifying selection during evolution. In addition, collinearity analysis showed that MATE genes were highly conserved between pepper and potato. Analysis of cis-elements in MATE promoters and MATE expression patterns revealed that MATE proteins likely function in many stages of plant development, especially during fruit ripening, and when exposed to multiple stresses, consistent with the existence of functional differentiation between duplicated MATE genes. Together, our results lay the foundation for further characterization of pepper and potato MATE gene family members.
Collapse
|
25
|
Qiao C, Yang J, Wan Y, Xiang S, Guan M, Du H, Tang Z, Lu K, Li J, Qu C. A Genome-Wide Survey of MATE Transporters in Brassicaceae and Unveiling Their Expression Profiles under Abiotic Stress in Rapeseed. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1072. [PMID: 32825473 PMCID: PMC7569899 DOI: 10.3390/plants9091072] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 08/14/2020] [Accepted: 08/17/2020] [Indexed: 01/22/2023]
Abstract
The multidrug and toxic compound extrusion (MATE) protein family is important in the export of toxins and other substrates, but detailed information on this family in the Brassicaceae has not yet been reported compared to Arabidopsis thaliana. In this study, we identified 57, 124, 81, 85, 130, and 79 MATE genes in A. thaliana, Brassica napus, Brassica oleracea, Brassica rapa, Brassica juncea, and Brassica nigra, respectively, which were unevenly distributed on chromosomes owing to both tandem and segmental duplication events. Phylogenetic analysis showed that these genes could be classified into four subgroups, shared high similarity and conservation within each group, and have evolved mainly through purifying selection. Furthermore, numerous B. napusMATE genes showed differential expression between tissues and developmental stages and between plants treated with heavy metals or hormones and untreated control plants. This differential expression was especially pronounced for the Group 2 and 3 BnaMATE genes, indicating that they may play important roles in stress tolerance and hormone induction. Our results provide a valuable foundation for the functional dissection of the different BnaMATE homologs in B. napus and its parental lines, as well as for the breeding of more stress-tolerant B. napus genotypes.
Collapse
Affiliation(s)
- Cailin Qiao
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Jing Yang
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Yuanyuan Wan
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Sirou Xiang
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Mingwei Guan
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Hai Du
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Zhanglin Tang
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Kun Lu
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Jiana Li
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| | - Cunmin Qu
- Chongqing Engineering Research Center for Rapeseed, College of Agronomy and Biotechnology, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, China; (C.Q.); (J.Y.); (Y.W.); (S.X.); (M.G.); (H.D.); (Z.T.); (K.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400715, China
| |
Collapse
|
26
|
Upadhyay N, Kar D, Deepak Mahajan B, Nanda S, Rahiman R, Panchakshari N, Bhagavatula L, Datta S. The multitasking abilities of MATE transporters in plants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:4643-4656. [PMID: 31106838 DOI: 10.1093/jxb/erz246] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 05/14/2019] [Indexed: 05/20/2023]
Abstract
As sessile organisms, plants constantly monitor environmental cues and respond appropriately to modulate their growth and development. Membrane transporters act as gatekeepers of the cell regulating both the inflow of useful materials as well as exudation of harmful substances. Members of the multidrug and toxic compound extrusion (MATE) family of transporters are ubiquitously present in almost all forms of life including prokaryotes and eukaryotes. In bacteria, MATE proteins were originally characterized as efflux transporters conferring drug resistance. There are 58 MATE transporters in Arabidopsis thaliana, which are also known as DETOXIFICATION (DTX) proteins. In plants, these integral membrane proteins are involved in a diverse array of functions, encompassing secondary metabolite transport, xenobiotic detoxification, aluminium tolerance, and disease resistance. MATE proteins also regulate overall plant development by controlling phytohormone transport, tip growth processes, and senescence. While most of the functional characterizations of MATE proteins have been reported in Arabidopsis, recent reports suggest that their diverse roles extend to numerous other plant species. The wide array of functions exhibited by MATE proteins highlight their multitasking ability. In this review, we integrate information related to structure and functions of MATE transporters in plants. Since these transporters are central to mechanisms that allow plants to adapt to abiotic and biotic stresses, their study can potentially contribute to improving stress tolerance under changing climatic conditions.
Collapse
Affiliation(s)
- Neha Upadhyay
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
| | - Debojyoti Kar
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
| | - Bhagyashri Deepak Mahajan
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
- Cellular Organization and Signalling, National Centre for Biological Sciences (NCBS), Bengaluru, India
| | - Sanchali Nanda
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
| | - Rini Rahiman
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
- Department of Biological Sciences, National University of Singapore, Singapore
| | - Nimisha Panchakshari
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
- Department of Genetics, Ludwig Maximilians Universität, Biocenter, Germany
| | - Lavanya Bhagavatula
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
| | - Sourav Datta
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, India
| |
Collapse
|
27
|
Wang H, Ji F, Zhang Y, Hou J, Liu W, Huang J, Liang W. Interactions between hydrogen sulphide and nitric oxide regulate two soybean citrate transporters during the alleviation of aluminium toxicity. PLANT, CELL & ENVIRONMENT 2019; 42:2340-2356. [PMID: 30938457 DOI: 10.1111/pce.13555] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Accepted: 03/30/2019] [Indexed: 05/11/2023]
Abstract
Hydrogen sulphide (H2 S) is emerging as an important signalling molecule involved in plant resistance to various stresses. However, the underlying mechanism of H2 S in aluminium (Al) resistance and the crosstalk between H2 S and nitric oxide (NO) in Al stress signalling remain elusive. Citrate secretion is a wide-spread strategy for plants against Al toxicity. Here, two citrate transporter genes, GmMATE13 and GmMATE47, were identified and characterized in soybean. Functional analysis in Xenopus oocytes and transgenic Arabidopsis showed that GmMATE13 and GmMATE47 mediated citrate exudation and enhanced Al resistance. Al treatment triggered H2 S generation and citrate exudation in soybean roots. Pretreatment with an H2 S donor significantly elevated Al-induced citrate exudation, reduced Al accumulation in root tips, and alleviated Al-induced inhibition of root elongation, whereas application of an H2 S scavenger elicited the opposite effect. Furthermore, H2 S and NO mediated Al-induced GmMATE expression and plasma membrane (PM) H+ -ATPase activity and expression. Further investigation showed that NO induced H2 S production by regulating the key enzymes involved in biosynthesis and degradation of H2 S. These findings indicate that H2 S acts downstream of NO in mediating Al-induced citrate secretion through the upregulation of PM H+ -ATPase-coupled citrate transporter cotransport systems, thereby conferring plant resistance to Al toxicity.
Collapse
Affiliation(s)
- Huahua Wang
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Fang Ji
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Yangyang Zhang
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Junjie Hou
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Wenwen Liu
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Junjun Huang
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Weihong Liang
- College of Life Sciences, Henan Normal University, Xinxiang, China
| |
Collapse
|
28
|
Cao YY, Qi CD, Li S, Wang Z, Wang X, Wang J, Ren S, Li X, Zhang N, Guo YD. Melatonin Alleviates Copper Toxicity via Improving Copper Sequestration and ROS Scavenging in Cucumber. PLANT & CELL PHYSIOLOGY 2019; 60:562-574. [PMID: 30496548 DOI: 10.1093/pcp/pcy226] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 11/20/2018] [Indexed: 05/17/2023]
Abstract
Melatonin plays an important role in stress tolerance in plants. In this study, exogenous melatonin significantly alleviated the dwarf phenotype and inhibited the decrease of plant fresh weight induced by excess copper (Cu2+). Our results indicated that melatonin alleviated Cu2+ toxicity by improving Cu2+ sequestration, carbon metabolism and ROS (reactive oxygen species) scavenging, rather than by influencing the Cu2+ uptake under excess Cu2+ conditions. Transcriptome analysis showed that melatonin broadly altered gene expression under Cu2+ stress. Melatonin increased the levels of glutathione and phytochelatin to chelate excess Cu2+ and promoted cell wall trapping, thus keeping more Cu2+ in the cell wall and vacuole. Melatonin inhibited ROS production and enhanced antioxidant systems at the transcriptional level and enzyme activities, thus building a line of defense in response to excess Cu2+. The distribution of nutrient elements was recovered by melatonin which was disturbed by Cu2+. In addition, melatonin activated carbon metabolism, especially glycolysis and the pentose phosphate pathway, to generate more ATP, an intermediate for biosynthesis. Taken together, melatonin alleviated Cu2+ toxicity in cucumber via multiple mechanisms. These results will help to resolve the toxic effects of Cu2+ stress on plant growth and development. These results can be used for new strategies to solve problems associated with Cu2+ stress.
Collapse
Affiliation(s)
- Yun-Yun Cao
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Chuan-Dong Qi
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Shuangtao Li
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Zhirong Wang
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Xiaoyun Wang
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Jinfang Wang
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Shuxin Ren
- School of Agriculture, Virginia State University, Petersburg, VA, USA
| | - Xingsheng Li
- Shandong Provincial Key Laboratory of Cucurbitaceae Vegetable Biological Breeding, Shandong Huasheng Agriculture Co. Ltd, Shandong, China
| | - Na Zhang
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| | - Yang-Dong Guo
- College of Horticulture, Beijing Key Laboratory of Growth and Developmental Regulation, China Agricultural University, Beijing, China
| |
Collapse
|
29
|
Pereira JF, Ryan PR. The role of transposable elements in the evolution of aluminium resistance in plants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:41-54. [PMID: 30325439 DOI: 10.1093/jxb/ery357] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 10/02/2018] [Indexed: 05/20/2023]
Abstract
Aluminium (Al) toxicity can severely reduce root growth and consequently affect plant development and yield. A mechanism by which many species resist the toxic effects of Al relies on the efflux of organic anions (OAs) from the root apices via OA transporters. Several of the genes encoding these OA transporters contain transposable elements (TEs) in the coding sequences or in flanking regions. Some of the TE-induced mutations impact Al resistance by modifying the level and/or location of gene expression so that OA efflux from the roots is increased. The importance of genomic modifications for improving the adaptation of plants to acid soils has been raised previously, but the growing number of examples linking TEs with these changes requires highlighting. Here, we review the role of TEs in creating genetic modifications that enhance the adaptation of plants to acid soils by increasing the release of OAs from the root apices. We argue that TEs have been an important source of beneficial mutations that have co-opted OA transporter proteins with other functions to perform this role. These changes have occurred relatively recently in the evolution of many species and likely facilitated their expansion into regions with acidic soils.
Collapse
Affiliation(s)
| | - Peter R Ryan
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| |
Collapse
|
30
|
Riaz M, Yan L, Wu X, Hussain S, Aziz O, Jiang C. Mechanisms of organic acids and boron induced tolerance of aluminum toxicity: A review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 165:25-35. [PMID: 30173023 DOI: 10.1016/j.ecoenv.2018.08.087] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 08/16/2018] [Accepted: 08/23/2018] [Indexed: 05/24/2023]
Abstract
Aluminum is a major limiting abiotic factor for plant growth and productivity on acidic soils. The primary disorder of aluminum toxicity is the rapid cessation of root elongation. The root apex is the most sensitive part of this organ. Although significant literature evidence and hypothesis exist on aluminum toxicity, the explicit mechanism through which aluminum ceases root growth is still indefinable. The mechanisms of tolerance in plants have been the focus of intense research. Some plant species growing on acidic soils have developed tolerance mechanisms to overcome and mitigate aluminum toxicity, either by avoiding entry of Al3+ into roots (exclusion mechanism) or by being able to counterbalance toxic Al3+ engrossed by the root system (internal tolerance mechanism). Genes belonging to ALMT (Aluminum-activated malate transporter) and MATE (Multidrug and toxin compounds extrusion) have been identified that are involved in the aluminum-activated secretion of organic acids from roots. However, different plant species show different gene expression pattern. On the other hand, boron (B) (indispensable micronutrient) is a promising nutrient in the tolerance to aluminum toxicity. It not only hinders the adsorption of aluminum to the cell wall but also improves plant growth. This review mainly explains the critical roles of organic acid and B-induced tolerance to aluminum by summarizing the mechanisms of ALMT, MATE, internal detoxification, molecular traits and genetic engineering of crops.
Collapse
Affiliation(s)
- Muhammad Riaz
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Lei Yan
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Xiuwen Wu
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, 38040 Punjab, Pakistan
| | - Omar Aziz
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Cuncang Jiang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
| |
Collapse
|
31
|
Rahman MA, Lee SH, Ji HC, Kabir AH, Jones CS, Lee KW. Importance of Mineral Nutrition for Mitigating Aluminum Toxicity in Plants on Acidic Soils: Current Status and Opportunities. Int J Mol Sci 2018; 19:E3073. [PMID: 30297682 PMCID: PMC6213855 DOI: 10.3390/ijms19103073] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Revised: 09/27/2018] [Accepted: 09/28/2018] [Indexed: 01/24/2023] Open
Abstract
Aluminum (Al) toxicity is one of the major limitations that inhibit plant growth and development in acidic soils. In acidic soils (pH < 5.0), phototoxic-aluminum (Al3+) rapidly inhibits root growth, and subsequently affects water and nutrient uptake in plants. This review updates the existing knowledge concerning the role of mineral nutrition for alleviating Al toxicity in plants to acid soils. Here, we explored phosphorus (P) is more beneficial in plants under P-deficient, and Al toxic conditions. Exogenous P addition increased root respiration, plant growth, chlorophyll content, and dry matter yield. Calcium (Ca) amendment (liming) is effective for correcting soil acidity, and for alleviating Al toxicity. Magnesium (Mg) is able to prevent Al migration through the cytosolic plasma membrane in root tips. Sulfur (S) is recognized as a versatile element that alleviates several metals toxicity including Al. Moreover, silicon (Si), and other components such as industrial byproducts, hormones, organic acids, polyamines, biofertilizers, and biochars played promising roles for mitigating Al toxicity in plants. Furthermore, this review provides a comprehensive understanding of several new methods and low-cost effective strategies relevant to the exogenous application of mineral nutrition on Al toxicity mitigation. This information would be effective for further improvement of crop plants in acid soils.
Collapse
Affiliation(s)
- Md Atikur Rahman
- Molecular Breeding Laboratory, Grassland and Forages Division, National Institute of Animal Science, Rural Development Administration, Cheonan 31000, Korea.
| | - Sang-Hoon Lee
- Molecular Breeding Laboratory, Grassland and Forages Division, National Institute of Animal Science, Rural Development Administration, Cheonan 31000, Korea.
| | - Hee Chung Ji
- Molecular Breeding Laboratory, Grassland and Forages Division, National Institute of Animal Science, Rural Development Administration, Cheonan 31000, Korea.
| | - Ahmad Humayan Kabir
- Molecular Plant Physiology Laboratory, Department of Botany, University of Rajshahi, Rajshahi 6205, Bangladesh.
| | - Chris Stephen Jones
- Feed and Forage Biosciences, International Livestock Research Institute, P.O. Box 5689, Addis Ababa, Ethiopia.
| | - Ki-Won Lee
- Molecular Breeding Laboratory, Grassland and Forages Division, National Institute of Animal Science, Rural Development Administration, Cheonan 31000, Korea.
| |
Collapse
|
32
|
Ma Q, Yi R, Li L, Liang Z, Zeng T, Zhang Y, Huang H, Zhang X, Yin X, Cai Z, Mu Y, Cheng Y, Zeng Q, Li X, Nian H. GsMATE encoding a multidrug and toxic compound extrusion transporter enhances aluminum tolerance in Arabidopsis thaliana. BMC PLANT BIOLOGY 2018; 18:212. [PMID: 30268093 PMCID: PMC6162897 DOI: 10.1186/s12870-018-1397-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 08/27/2018] [Indexed: 05/08/2023]
Abstract
BACKGROUND Multidrug and toxic compound extrusion (MATE) transporters, which exist widely in plants, function as crucial regulators in plant resistance to aluminum (Al) toxicity by inducing citrate efflux. However, the functions of most MATE family members in soybean (Glycine soja) remain to be elucidated. RESULTS Expression pattern analysis showed that GsMATE was constitutively expressed in different soybean organs, with the highest level in root compared with those in stem, leaf and cotyledon. In addition, Al stress induced expression of GsMATE in soybean. Temporal analysis indicated that GsMATE expression was greatly enhanced by increasing concentrations of aluminum [Al3+] after short exposure, reaching the high levels detected in the BW69 (Al-resistant) and the JW81 (Al-sensitive) lines of Glycine soja of wild soybean at 6 h and 8 h, respectively. Furthermore, transient GsMATE expression in Arabidopsis protoplasts showed that GsMATE protein localized to the plasma membrane. Overexpression of GsMATE on an Arabidopsis columbia-0 (Col-0) background resulted in increased Al tolerance in transgenic plants. Analysis of hematoxylin staining showed that the roots of GsMATE transgenic lines were stained less intensely than those of the wild-type exposured to the same AlCl3 concentrations. Therefore, GsMATE enhanced the resistance of transgenic plants to Al toxicity by reducing Al accumulation in Arabidopsis roots. CONCLUSIONS In summary, our results indicate that GsMATE is responsive to aluminum stress and may participate in the regulation of sensitivity to Al toxicity in Arabidopsis. In addition, the GsMATE protein is an Al-induced citrate transporter of the MATE family and exerts an essential role in Al tolerance in Glycine soja.
Collapse
Affiliation(s)
- Qibin Ma
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Rong Yi
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Lu Li
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Zhongyi Liang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Tingting Zeng
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Yu Zhang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - He Huang
- The Experimental Teaching Center of Public Basic Courses, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Xiao Zhang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Xiangli Yin
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Zhandong Cai
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Yinghui Mu
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Yanbo Cheng
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| | - Qiaoying Zeng
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Guangdong Provincial Bioengineering Institute, Guangzhou, Guangdong 510316 People’s Republic of China
| | - Xiuping Li
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Guangdong AIB Polytechnic, Guangzhou, Guangdong 510316 People’s Republic of China
| | - Hai Nian
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro- bioresources, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
- The National Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou, Guangdong 510642 People’s Republic of China
| |
Collapse
|
33
|
Lei GJ, Yokosho K, Yamaji N, Ma JF. Two MATE Transporters with Different Subcellular Localization are Involved in Al Tolerance in Buckwheat. PLANT & CELL PHYSIOLOGY 2017; 58:2179-2189. [PMID: 29040793 DOI: 10.1093/pcp/pcx152] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2017] [Accepted: 10/04/2017] [Indexed: 05/09/2023]
Abstract
Buckwheat (Fagopyrum esculentum) shows high tolerance to aluminum (Al) toxicity, but the molecular mechanisms responsible for this high Al tolerance are still poorly understood. Here, we investigated the involvement of two MATE (multi-drug and toxic compound extrusion) genes in Al tolerance. Both FeMATE1 and FeMATE2 showed efflux transport activity for citrate, but not for oxalate when expressed in Xenopus oocytes. A transient assay with buckwheat leaf protoplasts using green fluorescent protein (GFP) fusion showed that FeMATE1 was mainly localized to the plasma membrane, whereas FeMATE2 was localized to the trans-Golgi and Golgi. The expression of FeMATE1 was induced by Al only in the roots, but that of FeMATE2 was up-regulated in both the roots and leaves. Furthermore, the expression of both genes only responded to Al toxicity, but not to other stresses including low pH, cadmium (Cd) and lanthanum (La). Heterologous expression of FeMATE1 or FeMATE2 in the Arabidopsis mutant atmate partially rescued its Al tolerance. Expression of FeMATE1 also partially recovered the Al-induced secretion of citrate in the transgenic lines, whereas expression of FeMATE2 did not complement the citrate secretion. Further physiological analysis showed that buckwheat roots also secreted citrate in addition to oxalate in response to Al in a dose-responsive manner. Taken together, our results indicate that FeMATE1 is involved in the Al-activated citrate secretion in the roots, while FeMATE2 is probably responsible for transporting citrate into the Golgi system for the internal detoxification of Al in the roots and leaves of buckwheat.
Collapse
Affiliation(s)
- Gui Jie Lei
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | - Kengo Yokosho
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | - Naoki Yamaji
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| | - Jian Feng Ma
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan
| |
Collapse
|
34
|
Santos ALD, Chaves-Silva S, Yang L, Maia LGS, Chalfun-Júnior A, Sinharoy S, Zhao J, Benedito VA. Global analysis of the MATE gene family of metabolite transporters in tomato. BMC PLANT BIOLOGY 2017; 17:185. [PMID: 29084510 PMCID: PMC5663081 DOI: 10.1186/s12870-017-1115-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Accepted: 10/09/2017] [Indexed: 05/20/2023]
Abstract
BACKGROUND Species in the Solanaceae family are known for producing plethora of specialized metabolites. In addition to biosynthesis pathways, a full comprehension of secondary metabolism must also take into account the transport and subcellular compartmentalization of substances. Here, we examined the MATE (Multidrug and Toxic Compound Extrusion, or Multi-Antimicrobial Extrusion) gene family in the tomato (Solanum lycopersicum) genome with the objective of better understanding the transport of secondary metabolites in this model species. MATE membrane effluxers encompass an ancient gene family of secondary transporters present in all kingdoms of life, but with a remarkable expansion in plants. They mediate the transport of primary and secondary metabolites using the proton motive force through several membrane systems of the cell. RESULTS We identified 67 genes coding for MATE transporters in the tomato genome, 33 of which are expressed constitutively whereas 34 are expressed in specific cell types or environmental conditions. Synteny analyses revealed bona fide paralogs and Arabidopsis orthologs. Co-expression analysis between MATE and regulatory genes revealed 78 positive and 8 negative strong associations (ρ≥|0.8|). We found no evidence of MATE transporters belonging to known metabolic gene clusters in tomato. CONCLUSIONS Altogether, our expression data, phylogenetic analyses, and synteny study provide strong evidence of functional homologies between MATE genes of tomato and Arabidopsis thaliana. Our co-expression study revealed potential transcriptional regulators of MATE genes that warrant further investigation. This work sets the stage for genome-wide functional analyses of MATE transporters in tomato and other Solanaceae species of economic relevance.
Collapse
Affiliation(s)
- Adolfo Luís Dos Santos
- Division of Plant and Soil Sciences, West Virginia University, 3425 New Agricultural Sciences Building, Morgantown, WV, 26506-6108, USA
- Plant Molecular Physiology Laboratory, Biology Department, Federal University of Lavras (UFLA), Lavras, MG, Brazil
| | - Samuel Chaves-Silva
- Division of Plant and Soil Sciences, West Virginia University, 3425 New Agricultural Sciences Building, Morgantown, WV, 26506-6108, USA
- Plant Molecular Physiology Laboratory, Biology Department, Federal University of Lavras (UFLA), Lavras, MG, Brazil
| | - Lina Yang
- Division of Plant and Soil Sciences, West Virginia University, 3425 New Agricultural Sciences Building, Morgantown, WV, 26506-6108, USA
| | - Lucas Gontijo Silva Maia
- Division of Plant and Soil Sciences, West Virginia University, 3425 New Agricultural Sciences Building, Morgantown, WV, 26506-6108, USA
| | - Antonio Chalfun-Júnior
- Plant Molecular Physiology Laboratory, Biology Department, Federal University of Lavras (UFLA), Lavras, MG, Brazil
| | - Senjuti Sinharoy
- Department of Biotechnology, University of Calcutta, Kolkata, India
| | - Jian Zhao
- State Key Laboratory of Tea Plant Biology and Utilization, College of Tea and Food Sciences, Anhui Agricultural University, Hefei, 230036, China
| | - Vagner Augusto Benedito
- Division of Plant and Soil Sciences, West Virginia University, 3425 New Agricultural Sciences Building, Morgantown, WV, 26506-6108, USA.
| |
Collapse
|
35
|
Zhang J, Wei J, Li D, Kong X, Rengel Z, Chen L, Yang Y, Cui X, Chen Q. The Role of the Plasma Membrane H +-ATPase in Plant Responses to Aluminum Toxicity. FRONTIERS IN PLANT SCIENCE 2017; 8:1757. [PMID: 29089951 PMCID: PMC5651043 DOI: 10.3389/fpls.2017.01757] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Accepted: 09/25/2017] [Indexed: 05/04/2023]
Abstract
Aluminum (Al) toxicity is a key factor limiting plant growth and crop production on acid soils. Increasing the plant Al-detoxification capacity and/or breeding Al-resistant cultivars are a cost-effective strategy to support crop growth on acidic soils. The plasma membrane H+-ATPase plays a central role in all plant physiological processes. Changes in the activity of the plasma membrane H+-ATPase through regulating the expression and phosphorylation of this enzyme are also involved in many plant responses to Al toxicity. The plasma membrane H+-ATPase mediated H+ influx may be associated with the maintenance of cytosolic pH and the plasma membrane gradients as well as Al-induced citrate efflux mediated by a H+-ATPase-coupled MATE co-transport system. In particular, modulating the activity of plasma membrane H+-ATPase through application of its activators (e.g., magnesium or IAA) or using transgenics has effectively enhanced plant resistance to Al stress in several species. In this review, we critically assess the available knowledge on the role of the plasma membrane H+-ATPase in plant responses to Al stress, incorporating physiological and molecular aspects.
Collapse
Affiliation(s)
- Jiarong Zhang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Jian Wei
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Dongxu Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Xiangying Kong
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
- Faculty of Architecture and City Planning, Kunming University of Science and Technology, Kunming, China
| | - Zed Rengel
- UWA School of Agriculture and Environment, Faculty of Science, University of Western Australia, Perth, WA, Australia
| | - Limei Chen
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Ye Yang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Xiuming Cui
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
| | - Qi Chen
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China
- UWA School of Agriculture and Environment, Faculty of Science, University of Western Australia, Perth, WA, Australia
| |
Collapse
|
36
|
Ribeiro AP, de Souza WR, Martins PK, Vinecky F, Duarte KE, Basso MF, da Cunha BADB, Campanha RB, de Oliveira PA, Centeno DC, Cançado GMA, de Magalhães JV, de Sousa CAF, Andrade AC, Kobayashi AK, Molinari HBC. Overexpression of BdMATE Gene Improves Aluminum Tolerance in Setaria viridis. FRONTIERS IN PLANT SCIENCE 2017; 8:865. [PMID: 28642761 PMCID: PMC5462932 DOI: 10.3389/fpls.2017.00865] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Accepted: 05/09/2017] [Indexed: 05/02/2023]
Abstract
Acidic soils are distributed worldwide, predominantly in tropical and subtropical areas, reaching around 50% of the arable soil. This type of soil strongly reduces crop production, mainly because of the presence of aluminum, which has its solubility increased at low pH levels. A well-known physiological mechanism used by plants to cope with Al stress involves activation of membrane transporters responsible for organic acid anions secretion from the root apex to the rhizosphere, which chelate Al, preventing its absorption by roots. In sorghum, a membrane transporter gene belonging to multidrug and toxic compound extrusion (MATE) family was identified and characterized as an aluminum-activated citrate transporter gene responsible for Al tolerance in this crop. Setaria viridis is an emerging model for C4 species and it is an important model to validate some genes for further C4 crops transformation, such as sugarcane, maize, and wheat. In the present work, Setaria viridis was used as a model plant to overexpress a newly identified MATE gene from Brachypodium distachyon (BdMATE), closely related to SbMATE, for aluminum tolerance assays. Transgenic S. viridis plants overexpressing a BdMATE presented an improved Al tolerance phenotype, characterized by sustained root growth and exclusion of aluminum from the root apex in transgenic plants, as confirmed by hematoxylin assay. In addition, transgenic plants showed higher root citrate exudation into the rhizosphere, suggesting that Al tolerance improvement in these plants could be related to the chelation of the metal by the organic acid anion. These results suggest that BdMATE gene can be used to transform C4 crops of economic importance with improved aluminum tolerance.
Collapse
Affiliation(s)
- Ana P. Ribeiro
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
- Plant Biotechnology Program, Federal University of LavrasLavras, Brazil
| | - Wagner R. de Souza
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | - Polyana K. Martins
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | - Felipe Vinecky
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | - Karoline E. Duarte
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | - Marcos F. Basso
- Genetics and Biotechnology Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | | | - Raquel B. Campanha
- Biomass and Biofuels Chemistry Laboratory, Embrapa AgroenergyBrasilia, Brazil
| | | | - Danilo C. Centeno
- Centre of Natural Sciences and Humanities, Federal University of ABCSão Bernardo do Campo, Brazil
| | - Geraldo M. A. Cançado
- Center of Genetic Engineering and Molecular Biology, Embrapa GenClima, University of Campinas, CampinasBrazil
| | | | | | - Alan C. Andrade
- Plant Biotechnology Program, Federal University of LavrasLavras, Brazil
- INOVACAFÉ, Embrapa CoffeeLavras, Brazil
| | | | | |
Collapse
|
37
|
Zhang L, Wu XX, Wang J, Qi C, Wang X, Wang G, Li M, Li X, Guo YD. BoALMT1, an Al-Induced Malate Transporter in Cabbage, Enhances Aluminum Tolerance in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2017; 8:2156. [PMID: 29410672 PMCID: PMC5787101 DOI: 10.3389/fpls.2017.02156] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 12/06/2017] [Indexed: 05/02/2023]
Abstract
Aluminum (Al) is present in approximately 50% of the arable land worldwide and is regarded as the main limiting factor of crop yield on acidic soil. Al-induced root malate efflux plays an important role in the Al tolerance of plants. Here, the aluminum induced malate transporter BoALMT1 (KF322104) was cloned from cabbage (Brassica oleracea). BoALMT1 showed higher expression in roots than in shoots. The expression of BoALMT1 was specifically induced by Al treatment, but not the trivalent cations lanthanum (La), cadmium (Cd), zinc (Zn), or copper (Cu). Subcellular localization studies were performed in onion epidermal cells and revealed that BoALMT1 was localized at the plasma membrane. Scanning Ion-selective Electrode Technique was used to analyze H+ flux. Xenopus oocytes and Arabidopsis thaliana expressing BoALMT1 excreted more H+ under Al treatment. Overexpressing BoALMT1 in transgenic Arabidopsis resulted in enhanced Al tolerance and increased malate secretion. The results suggested that BoALMT1 functions as an Al-resistant gene and encodes a malate transporter. Expressing BoALMT1 in Xenopus oocytes or A. thaliana indicated that BoALMT1 could increase malate secretion and H+ efflux to resist Al tolerance.
Collapse
Affiliation(s)
- Lei Zhang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Xin-Xin Wu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Jinfang Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Chuandong Qi
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Xiaoyun Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Gongle Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Mingyue Li
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
| | - Xingsheng Li
- Shandong Huasheng Agriculture Co. Ltd, Shandong, China
| | - Yang-Dong Guo
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing, China
- *Correspondence: Yang-Dong Guo
| |
Collapse
|
38
|
Wang L, Bei X, Gao J, Li Y, Yan Y, Hu Y. The similar and different evolutionary trends of MATE family occurred between rice and Arabidopsis thaliana. BMC PLANT BIOLOGY 2016; 16:207. [PMID: 27669820 PMCID: PMC5037600 DOI: 10.1186/s12870-016-0895-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Accepted: 07/19/2016] [Indexed: 05/02/2023]
Abstract
BACKGROUND Multidrug and toxic compound extrusion (MATE) transporter proteins are present in all organisms. Although the functions of some MATE gene family members have been studied in plants, few studies have investigated the gene expansion patterns, functional divergence, or the effects of positive selection. RESULTS Forty-five MATE genes from rice and 56 from Arabidopsis were identified and grouped into four subfamilies. MATE family genes have similar exon-intron structures in rice and Arabidopsis; MATE gene structures are conserved in each subfamily but differ among subfamilies. In both species, the MATE gene family has expanded mainly through tandem and segmental duplications. A transcriptome atlas showed considerable differences in expression among the genes, in terms of transcript abundance and expression patterns under normal growth conditions, indicating wide functional divergence in this family. In both rice and Arabidopsis, the MATE genes showed consistent functional divergence trends, with highly significant Type-I divergence in each subfamily, while Type-II divergence mainly occurred in subfamily III. The Type-II coefficients between rice subfamilies I/III, II/III, and IV/III were all significantly greater than zero, while only the Type-II coefficient between Arabidopsis IV/III subfamilies was significantly greater than zero. A site-specific model analysis indicated that MATE genes have relatively conserved evolutionary trends. A branch-site model suggested that the extent of positive selection on each subfamily of rice and Arabidopsis was different: subfamily II of Arabidopsis showed higher positive selection than other subfamilies, whereas in rice, positive selection was highest in subfamily III. In addition, the analyses identified 18 rice sites and 7 Arabidopsis sites that were responsible for positive selection and for Type-I and Type-II functional divergence; there were no common sites between rice and Arabidopsis. Five coevolving amino acid sites were identified in rice and three in Arabidopsis; these sites might have important roles in maintaining local structural stability and protein functional domains. CONCLUSIONS We demonstrate that the MATE gene family expanded through tandem and segmental duplication in both rice and Arabidopsis. Overall, the results of our analyses contribute to improved understanding of the molecular evolution and functions of the MATE gene family in plants.
Collapse
Affiliation(s)
- Lihui Wang
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| | - Xiujuan Bei
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| | - Jiansheng Gao
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| | - Yaxuan Li
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| | - Yueming Yan
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| | - Yingkao Hu
- College of Life Sciences, Capital Normal University, Beijing, 100048 China
| |
Collapse
|
39
|
Yokosho K, Yamaji N, Fujii-Kashino M, Ma JF. Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice. PLANT & CELL PHYSIOLOGY 2016; 57:976-85. [PMID: 26872836 DOI: 10.1093/pcp/pcw026] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Accepted: 01/25/2016] [Indexed: 05/22/2023]
Abstract
The multidrug and toxic compound extrusion (MATE) transporters represent a large transporter family in plants, but the role of most genes in this family has not been examined. We functionally characterized a MATE family member, OsFRDL2, in rice (Oryza sativa). OsFRDL2 showed an efflux transport activity for citrate when it was expressed in both Xenopus oocytes and cultured tobacco cells. OsFRDL2 was mainly expressed in the roots and its expression was not induced by iron (Fe) deficiency, but it was rapidly up-regulated by aluminum (Al). Furthermore, the expression of OsFRDL2 was regulated by ART1, a C2H2-type zinc-finger transcription factor for Al tolerance. OsFRDL2 protein was localized at unidentified vesicles in the cytosol, but not co-localized with either mitochondria or peroxisomes when expressed in both onion epidermal cells and cultured tobacco cells. Knockout of OsFRDL2 decreased Al-induced secretion of citrate from the roots, but did not affect the internal citrate concentration. The Al-induced inhibition of root elongation was similar between the OsFRDL2 knockout line and its wild-type rice. Knockout of OsFRDL2 did not affect the translocation of Fe from the roots to the shoots. A double mutant between osfrdl2 and osfrdl4 or osfrdl1 did not further decrease the Al-induced citrate secretion and Fe translocation compared with the single mutant. Collectively, our results indicate that although OsFRDL2 is involved in the Al-induced secretion of citrate, its contribution to high Al tolerance is relatively small in rice.
Collapse
Affiliation(s)
- Kengo Yokosho
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
| | - Naoki Yamaji
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
| | - Miho Fujii-Kashino
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
| | - Jian Feng Ma
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, 710-0046 Japan
| |
Collapse
|
40
|
Liu J, Li Y, Wang W, Gai J, Li Y. Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genomics 2016; 17:223. [PMID: 26968518 PMCID: PMC4788864 DOI: 10.1186/s12864-016-2559-8] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2016] [Accepted: 02/29/2016] [Indexed: 12/02/2022] Open
Abstract
BACKGROUND Multidrug and toxic compound extrusion (MATE) family is an important group of the multidrug efflux transporters that extrude organic compounds, transporting a broad range of substrates such as organic acids, plant hormones and secondary metabolites. However, genome-wide analysis of MATE family in plant species is limited and no such studies have been reported in soybean. RESULTS A total of 117 genes encoding MATE transporters were identified from the whole genome sequence of soybean (Glycine max), which were denominated as GmMATE1 - GmMATE117. These 117 GmMATE genes were unevenly localized on soybean chromosomes 1 to 20, with both tandem and segmental duplication events detected, and most genes showed tissue-specific expression patterns. Soybean MATE family could be classified into four subfamilies comprising ten smaller subgroups, with diverse potential functions such as transport and accumulation of flavonoids or alkaloids, extrusion of plant-derived or xenobiotic compounds, regulation of disease resistance, and response to abiotic stresses. Eight soybean MATE transporters clustered together with the previously reported MATE proteins related to aluminum (Al) detoxification and iron translocation were further analyzed. Seven stress-responsive cis-elements such as ABRE, ARE, HSE, LTR, MBS, as well as a cis-element of ART1 (Al resistance transcription factor 1), GGNVS, were identified in the upstream region of these eight GmMATE genes. Differential gene expression analysis of these eight GmMATE genes in response to Al stress helps us identify GmMATE75 as the candidate gene for Al tolerance in soybean, whose relative transcript abundance increased at 6, 12 and 24 h after Al treatment, with more fold changes in Al-tolerant than Al-sensitive cultivar, which is consistent with previously reported Al-tolerance related MATE genes. CONCLUSIONS A total of 117 MATE transporters were identified in soybean and their potential functions were proposed by phylogenetic analysis with known plant MATE transporters. The cis-elements and expression patterns of eight soybean MATE genes related to Al detoxification/iron translocation were analyzed, and GmMATE75 was identified as a candidate gene for Al tolerance in soybean. This study provides a first insight on soybean MATE family and their potential roles in soybean response to abiotic stresses especially Al toxicity.
Collapse
Affiliation(s)
- Juge Liu
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Yang Li
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Wei Wang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Junyi Gai
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| | - Yan Li
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095 China
| |
Collapse
|
41
|
Rengel Z, Bose J, Chen Q, Tripathi BN. Magnesium alleviates plant toxicity of aluminium and heavy metals. CROP AND PASTURE SCIENCE 2015; 66:1298. [PMID: 0 DOI: 10.1071/cp15284] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Magnesium (Mg) is an essential nutrient that can alleviate soilborne toxicity of many ions. This review paper critically assesses the literature on interactions and mechanisms influencing Mg alleviation of aluminium (Al) and heavy metal toxicity. Hydrated radii of Mg2+ and Al3+ are similar; therefore, these two ions compete for binding to ion transporters and other important biological molecules. In monocotyledonous species such as rice and wheat, millimolar concentrations of Mg alleviate Al toxicity, mainly by decreasing Al saturation and activity at cell wall and plasma membrane binding sites. In dicotyledonous legume species such as soybean (Glycine max), rice bean (Vigna umbellata) and broad bean (Vicia faba), micromolar concentrations of Mg may enhance biosynthesis of organic ligands and thus underpin alleviation of Al toxicity. Resistance to Al may be enhanced by increased expression of the genes coding for Mg transporters, as well as by upregulation of activity of Mg-transport proteins; intracellular Mg2+ activity may thus be increased under Al stress, which may increase the activity of H+-ATPases. In Vicia faba, Mg-related enhancement in the activity of plasma membrane H+-ATPase under Al stress was found to be due to post-translational modification (increased phosphorylation of the penultimate threonine as well as association with regulatory 14-3-3 proteins), resulting in increased resistance to Al stress. Magnesium can alleviate heavy metal stress by decreasing negative electrical potential and thus metal ion activities at the plasma membrane surface (physico-chemical competition), by enhancing activities of enzymes involved in biosynthesis of organic ligands, and by increasing vacuolar sequestration of heavy metals via increasing H+-pumping activity at the tonoplast. Future work should concentrate on characterising the role of intracellular Mg2+ homeostasis and Mg transporters in alleviating metal stress as well as in transcriptional, translational and post-translational regulation of H+-pumps and enzymes involved in biosynthesis and exudation of organic ligands.
Collapse
|
42
|
Transcriptional Regulation of Al Tolerance in Plants. ALUMINUM STRESS ADAPTATION IN PLANTS 2015. [DOI: 10.1007/978-3-319-19968-9_2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
|