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Freitas O, Campos PRA. Understanding evolutionary rescue and parallelism in response to environmental stress. Evolution 2024; 78:1453-1463. [PMID: 38738664 DOI: 10.1093/evolut/qpae074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 05/04/2024] [Accepted: 05/09/2024] [Indexed: 05/14/2024]
Abstract
Evolutionary rescue, the process by which populations facing environmental stress avoid extinction through genetic adaptation, is a critical area of study in evolutionary biology. The order in which mutations arise and get established will be relevant to the population's rescue. This study investigates the degree of parallel evolution at the genotypic level between independent populations facing environmental stress and subject to different demographic regimes. Under density regulation, 2 regimes exist: In the first, the population can restore positive growth rates by adjusting its population size or through adaptive mutations, whereas in the second regime, the population is doomed to extinction unless a rescue mutation occurs. Analytical approximations for the likelihood of evolutionary rescue are obtained and contrasted with simulation results. We show that the initial level of maladaptation and the demographic regime significantly affect the level of parallelism. There is an evident transition between these 2 regimes. Whereas in the first regime, parallelism decreases with the level of maladaptation, it displays the opposite behavior in the rescue/extinction regime. These findings have important implications for understanding population persistence and the degree of parallelism in evolutionary responses as they integrate demographic effects and evolutionary processes.
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Affiliation(s)
- Osmar Freitas
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife, Brazil
| | - Paulo R A Campos
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife, Brazil
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2
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Freitas O, Campos PRA. The role of epistasis in evolutionary rescue. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2024; 47:49. [PMID: 39066883 DOI: 10.1140/epje/s10189-024-00445-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Accepted: 07/18/2024] [Indexed: 07/30/2024]
Abstract
The process by which adaptive evolution preserves a population threatened with extinction due to environmental changes is known as evolutionary rescue. Several factors determine the fate of those populations, including demography and genetic factors, such as standing genetic variation, gene flow, availability of de novo mutations, and so on. Despite the extensive debate about evolutionary rescue in the current literature, a study about the role of epistasis and the topography of the fitness landscape on the fate of dwindling populations is missing. In the current work, we aim to fill this gap and study the influence of epistasis on the probability of extinction of populations. We present simulation results, and analytical approximations are derived. Counterintuitively, we show that the likelihood of extinction is smaller when the degree of epistasis is higher. The reason underneath is twofold: first, higher epistasis can promote mutations of more significant phenotypic effects, but also, the incongruence between the maps genotype-phenotype and phenotype-fitness turns the fitness landscape at low epistasis more rugged, thus curbing some of its advantages.
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Affiliation(s)
- Osmar Freitas
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife, PE, 50670-901, Brazil
| | - Paulo R A Campos
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife, PE, 50670-901, Brazil.
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3
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Altinok OA. Learning from disability studies to introduce the role of the individual to naturalistic accounts of disease. MEDICINE, HEALTH CARE, AND PHILOSOPHY 2024:10.1007/s11019-024-10216-9. [PMID: 38958899 DOI: 10.1007/s11019-024-10216-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/12/2024] [Indexed: 07/04/2024]
Abstract
Disability studies have been successfully focusing on individuals' lived experiences, the personalization of goals, and the constitution of the individual in defining disease and restructuring public understandings of disability. Although they had a strong influence in the policy making and medical modeling of disease, their framework has not been translated to traditional naturalistic accounts of disease. I will argue that, using new developments in evolutionary biology (Extended Evolutionary Synthesis [EES] about questions of proper function) and behavioral ecology (Niche conformance and construction about the questions of reference classes in biostatistics accounts), the main elements of the framework of disability studies can be used to represent life histories at the conceptual level of the two main "non-normative" accounts of disease. I chose these accounts since they are related to medicine in a more descriptive way. The success of the practical aspects of disability studies this way will be communicated without causing injustice to the individual since they will represent the individuality of the patient in two main naturalistic accounts of disease: the biostatistical account and the evolutionary functional account. Although most accounts criticizing the concept of disease as value-laden do not supply a positive element, disability studies can supply a good point for descriptive extension of the concept through inclusion of epistemic agency.
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Affiliation(s)
- Ozan Altan Altinok
- Center for Ethics and Law in the Life Sciences, Leibniz University of Hannover, Otto - Brener Straße 1, Hannover, Germany.
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4
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González-Forero M. Evolutionary-developmental (evo-devo) dynamics of hominin brain size. Nat Hum Behav 2024; 8:1321-1333. [PMID: 38802541 PMCID: PMC11272587 DOI: 10.1038/s41562-024-01887-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 04/11/2024] [Indexed: 05/29/2024]
Abstract
Brain size tripled in the human lineage over four million years, but why this occurred remains uncertain. Here, to study what caused this brain expansion, I mathematically model the evolutionary and developmental (evo-devo) dynamics of hominin brain size. The model recovers (1) the evolution of brain and body sizes of seven hominin species starting from brain and body sizes of the australopithecine scale, (2) the evolution of the hominin brain-body allometry and (3) major patterns of human development and evolution. I show that the brain expansion recovered is not caused by direct selection for brain size but by its genetic correlation with developmentally late preovulatory ovarian follicles. This correlation is generated over development if individuals experience a challenging ecology and seemingly cumulative culture, among other conditions. These findings show that the evolution of exceptionally adaptive traits may not be primarily caused by selection for them but by developmental constraints that divert selection.
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Munford C. Epistolution: a new principle necessary to a learning-first theory of life. Commun Integr Biol 2024; 17:2366249. [PMID: 38873336 PMCID: PMC11174056 DOI: 10.1080/19420889.2024.2366249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Accepted: 06/04/2024] [Indexed: 06/15/2024] Open
Abstract
Biological theory assumes the organized appearance of life and the reliable recurrence of traits are due to inheritance. Natural selection acting on blind variations produces phenotypes with heritable traits, one of which may be natural learning. The aim of learning, then, is solving problems related to survival and reproduction. But what if these views confuse cause with effect? Perhaps a learning algorithm is required for any phenotype at all to arise. If so, evolution proceeds learning-first, with individuals pursuing another telos entirely. I argue that this aim may be epistemological, the drive to understand the world through an umwelt. By "understand" I mean neither association nor prediction but Karl Popper's concept of explanation through conjecture and refutation. I propose that if only genetic materials are truly heritable, not traits, then testing a successful physical theory of life will depend on building abiotic machines which can perform natural learning without the presence of any inherited materials or conditions. I name this process "epistolution," combining "epistemology" and "evolution," to distinguish it from other concepts. Epistolution is an integral consequence of any learning-first view of life, such as the Cellular Basis of Consciousness theory. This type of theory suggests that in all cells during the history of life full-blown agency, involving beliefs, intentions, and desires, generated all the phenotypes that have then been winnowed by natural selection. Unlike in other versions, I posit that the aim of agential living systems is the explanation of reality rather than inductive prediction or survival/reproduction.
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Mangalam M, Kelty-Stephen DG. Multifractal perturbations to multiplicative cascades promote multifractal nonlinearity with asymmetric spectra. Phys Rev E 2024; 109:064212. [PMID: 39020880 DOI: 10.1103/physreve.109.064212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 05/24/2024] [Indexed: 07/20/2024]
Abstract
Biological and psychological processes have been conceptualized as emerging from intricate multiplicative interactions among component processes across various spatial and temporal scales. Among the statistical models employed to approximate these intricate nonlinear interactions across scales, one prominent framework is that of cascades. Despite decades of empirical work using multifractal formalisms, several fundamental questions persist concerning the proper interpretations of multifractal evidence of nonlinear cross-scale interactivity. Does multifractal spectrum width depend on multiplicative interactions, constituent noise processes participating in those interactions, or both? We conducted numerical simulations of cascade time series featuring component noise processes characterizing a range of nonlinear temporal correlations: nonlinearly multifractal, linearly multifractal (obtained via the iterative amplitude adjusted wavelet transform of nonlinearly multifractal), phase-randomized linearity (obtained via the iterative amplitude adjustment Fourier transform of nonlinearly multifractal), and phase and amplitude randomized (obtained via shuffling of nonlinearly multifractal). Our findings show that the multiplicative interactions coordinate with the nonlinear temporal correlations of noise components to dictate emergent multifractal properties. Multiplicative cascades with stronger nonlinear temporal correlations make multifractal spectra more asymmetric with wider left sides. However, when considering multifractal spectral differences between the original and surrogate time series, even multiplicative cascades produce multifractality greater than in surrogate time series, even with linearized multifractal noise components. In contrast, additivity among component processes leads to a linear outcome. These findings provide a robust framework for generating multifractal expectations for biological and psychological models in which cascade dynamics flow from one part of an organism to another.
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7
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Gontier N. Situating physiology within evolutionary theory. J Physiol 2024; 602:2401-2415. [PMID: 37755322 DOI: 10.1113/jp284410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 09/12/2023] [Indexed: 09/28/2023] Open
Abstract
Traditionally defined as the science of the living, or as the field that beyond anatomical structure and bodily form studies functional organization and behaviour, physiology has long been excluded from evolutionary research. The main reason for this exclusion is that physiology has a presential and futuristic outlook on life, while evolutionary theory is traditionally defined as the study of natural history. In this paper, I re-evaluate these classic science divisions and situate physiology within the history of the evolutionary sciences, as well as within debates on the Extended Evolutionary Synthesis and the need for a Third Way of Evolution. I then briefly point out how evolutionary physiology in particular contributes to research on function, causation, teleonomy, agency and cognition.
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Affiliation(s)
- Nathalie Gontier
- Applied Evolutionary Epistemology Lab & Centro de Filosofia das Ciências, Departamento de História e Filosofia das Ciências, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
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8
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Levin M. Self-Improvising Memory: A Perspective on Memories as Agential, Dynamically Reinterpreting Cognitive Glue. ENTROPY (BASEL, SWITZERLAND) 2024; 26:481. [PMID: 38920491 PMCID: PMC11203334 DOI: 10.3390/e26060481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 05/20/2024] [Accepted: 05/22/2024] [Indexed: 06/27/2024]
Abstract
Many studies on memory emphasize the material substrate and mechanisms by which data can be stored and reliably read out. Here, I focus on complementary aspects: the need for agents to dynamically reinterpret and modify memories to suit their ever-changing selves and environment. Using examples from developmental biology, evolution, and synthetic bioengineering, in addition to neuroscience, I propose that a perspective on memory as preserving salience, not fidelity, is applicable to many phenomena on scales from cells to societies. Continuous commitment to creative, adaptive confabulation, from the molecular to the behavioral levels, is the answer to the persistence paradox as it applies to individuals and whole lineages. I also speculate that a substrate-independent, processual view of life and mind suggests that memories, as patterns in the excitable medium of cognitive systems, could be seen as active agents in the sense-making process. I explore a view of life as a diverse set of embodied perspectives-nested agents who interpret each other's and their own past messages and actions as best as they can (polycomputation). This synthesis suggests unifying symmetries across scales and disciplines, which is of relevance to research programs in Diverse Intelligence and the engineering of novel embodied minds.
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Affiliation(s)
- Michael Levin
- Department of Biology, Allen Discovery Center, Tufts University, 200 Boston Avenue, Suite 4600, Medford, MA 02155-4243, USA
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9
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van Wijnen AJ, Lewallen EA. Natural selection and evolution: evolving concepts. ACADEMIA BIOLOGY 2024; 2:10.20935/AcadBiol6245. [PMID: 38873024 PMCID: PMC11175172 DOI: 10.20935/acadbiol6245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2024]
Abstract
Many recent studies in evolutionary biology have expanded and refined definitions of biological evolution and natural selection. Current evolutionary models incorporate different adaptive and non-adaptive processes based on molecular genetic changes and how DNA is modified over time in unicellular species, or in germline versus somatic cells in metazoan species. Cogent arguments can be raised for the view that natural selection should be considered a biological law, consistent with quantitative mathematical equations that describe the fitness of individuals, as well as variations within and among populations. Evolution is an overarching framework that incorporates the laws of natural selection and clarifies why phenotypic variation can increase in prevalence and result in species adaptations. The conceptual framework for biological evolution incorporates many cohesive principles that collectively have a predictive value. This framework will continue to evolve with improvements in high-resolution technologies that enable us to examine both adaptive and non-adaptive changes that drive biological phenotypes.
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Affiliation(s)
- Andre J. van Wijnen
- Department of Biochemistry, University of Vermont, Burlington, VT, 05405, USA
| | - Eric A. Lewallen
- Department of Biological Sciences, Hampton University, Hampton, VA, 23668, USA
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10
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Sievers B, Welker C, Hasson U, Kleinbaum AM, Wheatley T. Consensus-building conversation leads to neural alignment. Nat Commun 2024; 15:3936. [PMID: 38729961 PMCID: PMC11087652 DOI: 10.1038/s41467-023-43253-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 11/03/2023] [Indexed: 05/12/2024] Open
Abstract
Conversation is a primary means of social influence, but its effects on brain activity remain unknown. Previous work on conversation and social influence has emphasized public compliance, largely setting private beliefs aside. Here, we show that consensus-building conversation aligns future brain activity within groups, with alignment persisting through novel experiences participants did not discuss. Participants watched ambiguous movie clips during fMRI scanning, then conversed in groups with the goal of coming to a consensus about each clip's narrative. After conversation, participants' brains were scanned while viewing the clips again, along with novel clips from the same movies. Groups that reached consensus showed greater similarity of brain activity after conversation. Participants perceived as having high social status spoke more and signaled disbelief in others, and their groups had unequal turn-taking and lower neural alignment. By contrast, participants with central positions in their real-world social networks encouraged others to speak, facilitating greater group neural alignment. Socially central participants were also more likely to become neurally aligned to others in their groups.
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Affiliation(s)
- Beau Sievers
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, 03755, USA.
- Department of Psychology, Stanford University, Stanford, CA, 94305, USA.
| | - Christopher Welker
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, 03755, USA
| | - Uri Hasson
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ, 08544, USA
| | - Adam M Kleinbaum
- Tuck School of Business, Dartmouth College, Hanover, NH, 03755, USA
| | - Thalia Wheatley
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, 03755, USA
- Santa Fe Institute, Santa Fe, NM, 87501, USA
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11
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Theska T, Renahan T, Sommer RJ. Starvation resistance in the nematode Pristionchus pacificus requires a conserved supplementary nuclear receptor. ZOOLOGICAL LETTERS 2024; 10:7. [PMID: 38481284 PMCID: PMC10938818 DOI: 10.1186/s40851-024-00227-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 01/18/2024] [Indexed: 03/17/2024]
Abstract
Nuclear hormone receptors (NHRs) are a deeply-conserved superfamily of metazoan transcription factors, which fine-tune the expression of their regulatory target genes in response to a plethora of sensory inputs. In nematodes, NHRs underwent an explosive expansion and many species have hundreds of nhr genes, most of which remain functionally uncharacterized. However, recent studies have reported that two sister receptors, Ppa-NHR-1 and Ppa-NHR-40, are crucial regulators of feeding-structure morphogenesis in the diplogastrid model nematode Pristionchus pacificus. In the present study, we functionally characterize Ppa-NHR-10, the sister paralog of Ppa-NHR-1 and Ppa-NHR-40, aiming to reveal whether it too regulates aspects of feeding-structure development. We used CRISPR/CAS9-mediated mutagenesis to create small frameshift mutations of this nuclear receptor gene and applied a combination of geometric morphometrics and unsupervised clustering to characterize potential mutant phenotypes. However, we found that Ppa-nhr-10 mutants do not show aberrant feeding-structure morphologies. Instead, multiple RNA-seq experiments revealed that many of the target genes of this receptor are involved in lipid catabolic processes. We hypothesized that their mis-regulation could affect the survival of mutant worms during starvation, where lipid catabolism is often essential. Indeed, using novel survival assays, we found that mutant worms show drastically decreased starvation resistance, both as young adults and as dauer larvae. We also characterized genome-wide changes to the transcriptional landscape in P. pacificus when exposed to 24 h of acute starvation, and found that Ppa-NHR-10 partially regulates some of these responses. Taken together, these results demonstrate that Ppa-NHR-10 is broadly required for starvation resistance and regulates different biological processes than its closest paralogs Ppa-NHR-1 and Ppa-NHR-40.
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Affiliation(s)
- Tobias Theska
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology, Tübingen, Max-Planck-Ring 9, 72076, Tübingen, Germany
| | - Tess Renahan
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology, Tübingen, Max-Planck-Ring 9, 72076, Tübingen, Germany
| | - Ralf J Sommer
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology, Tübingen, Max-Planck-Ring 9, 72076, Tübingen, Germany.
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12
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Rohner PT, Jones JA, Moczek AP. Plasticity, symbionts and niche construction interact in shaping dung beetle development and evolution. J Exp Biol 2024; 227:jeb245976. [PMID: 38449332 DOI: 10.1242/jeb.245976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2024]
Abstract
Developmental plasticity is an important product of evolutionary processes, allowing organisms to maintain high fitness in the face of environmental perturbations. Once evolved, plasticity also has the potential to influence subsequent evolutionary outcomes, for example, by shaping phenotypic variation visible to selection and facilitating the emergence of novel trait variants. Furthermore, organisms may not just respond to environmental conditions through plasticity but may also actively modify the abiotic and (sym)biotic environments to which they themselves respond, causing plasticity to interact in complex ways with niche construction. Here, we explore developmental mechanisms and evolutionary consequences of plasticity in horned dung beetles. First, we discuss how post-invasion evolution of plasticity in an introduced Onthophagus species facilitated rapid range expansion and concurrent local adaptation of life history and morphology to novel climatic conditions. Second, we discuss how, in addition to plastically responding to variation in nutritional conditions, dung beetles engage in behaviors that modify the environment that they themselves respond to during later development. We document that these environment-modifying behaviors mask heritable variation for life history traits within populations, thereby shielding genetic variants from selection. Such cryptic genetic variation may be released and become selectable when these behaviors are compromised. Together, this work documents the complex interactions between plasticity, symbionts and niche construction, and highlights the usefulness of an integrative Eco-Evo-Devo framework to study the varied mechanisms and consequences of plasticity in development and evolution.
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Affiliation(s)
- Patrick T Rohner
- Department of Biology, Indiana University Bloomington, Bloomington, IN47405, USA
- Department of Ecology, Behavior, and Evolution, University of California San Diego, La Jolla, CA 92093, USA
| | - Joshua A Jones
- Department of Biology, Indiana University Bloomington, Bloomington, IN47405, USA
| | - Armin P Moczek
- Department of Biology, Indiana University Bloomington, Bloomington, IN47405, USA
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13
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Uchida Y, Tsutsumi M, Ichii S, Irie N, Furusawa C. Deciphering the origin of developmental stability: The role of intracellular expression variability in evolutionary conservation. Evol Dev 2024; 26:e12473. [PMID: 38414112 DOI: 10.1111/ede.12473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 12/01/2023] [Accepted: 02/14/2024] [Indexed: 02/29/2024]
Abstract
Progress in evolutionary developmental biology (evo-devo) has deepened our understanding of how intrinsic properties of embryogenesis, along with natural selection and population genetics, shape phenotypic diversity. A focal point of recent empirical and theoretical research is the idea that highly developmentally stable phenotypes are more conserved in evolution. Previously, we demonstrated that in Japanese medaka (Oryzias latipes), embryonic stages and genes with high stability, estimated through whole-embryo RNA-seq, are highly conserved in subsequent generations. However, the precise origin of the stability of gene expression levels evaluated at the whole-embryo level remained unclear. Such stability could be attributed to two distinct sources: stable intracellular expression levels or spatially stable expression patterns. Here we demonstrate that stability observed in whole-embryo RNA-seq can be attributed to stability at the cellular level (low variability in gene expression at the cellular levels). We quantified the intercellular variations in expression levels and spatial gene expression patterns for seven key genes involved in patterning dorsoventral and rostrocaudal regions during early development in medaka. We evaluated intracellular variability by counting transcripts and found its significant correlation with variation observed in whole-embryo RNA-seq data. Conversely, variation in spatial gene expression patterns, assessed through intraindividual left-right asymmetry, showed no correlation. Given the previously reported correlation between stability and conservation of expression levels throughout embryogenesis, our findings suggest a potential general trend: the stability or instability of developmental systems-and the consequent evolutionary diversity-may be primarily anchored in intrinsic fundamental elements such as the variability of intracellular states.
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Affiliation(s)
- Yui Uchida
- Center for Biosystems Dynamics Research, RIKEN, Osaka, Japan
| | - Masato Tsutsumi
- Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan
| | - Shunsuke Ichii
- Center for Biosystems Dynamics Research, RIKEN, Osaka, Japan
- Department of Physics, Graduate School of Science, The University of Tokyo, Tokyo, Japan
| | - Naoki Irie
- Research Center for Integrative Evolutionary Science, SOKENDAI, Kanagawa, Japan
| | - Chikara Furusawa
- Center for Biosystems Dynamics Research, RIKEN, Osaka, Japan
- Department of Physics, Graduate School of Science, The University of Tokyo, Tokyo, Japan
- Universal Biology Institute, The University of Tokyo, Tokyo, Japan
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14
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Jeffery KJ, Cheng K, Newcombe NS, Bingman VP, Menzel R. Unpacking the navigation toolbox: insights from comparative cognition. Proc Biol Sci 2024; 291:20231304. [PMID: 38320615 PMCID: PMC10846957 DOI: 10.1098/rspb.2023.1304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 01/09/2024] [Indexed: 02/08/2024] Open
Abstract
The study of navigation is informed by ethological data from many species, laboratory investigation at behavioural and neurobiological levels, and computational modelling. However, the data are often species-specific, making it challenging to develop general models of how biology supports behaviour. Wiener et al. outlined a framework for organizing the results across taxa, called the 'navigation toolbox' (Wiener et al. In Animal thinking: contemporary issues in comparative cognition (eds R Menzel, J Fischer), pp. 51-76). This framework proposes that spatial cognition is a hierarchical process in which sensory inputs at the lowest level are successively combined into ever-more complex representations, culminating in a metric or quasi-metric internal model of the world (cognitive map). Some animals, notably humans, also use symbolic representations to produce an external representation, such as a verbal description, signpost or map that allows communication of spatial information or instructions between individuals. Recently, new discoveries have extended our understanding of how spatial representations are constructed, highlighting that the hierarchical relationships are bidirectional, with higher levels feeding back to influence lower levels. In the light of these new developments, we revisit the navigation toolbox, elaborate it and incorporate new findings. The toolbox provides a common framework within which the results from different taxa can be described and compared, yielding a more detailed, mechanistic and generalized understanding of navigation.
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Affiliation(s)
- Kate J. Jeffery
- School of Psychology and Neuroscience, University of Glasgow, Glasgow G12 8QB, UK
| | - Ken Cheng
- School of Natural Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Nora S. Newcombe
- Department of Psychology, Temple University, Philadelphia, PA 19122, USA
| | - Verner P. Bingman
- J.P. Scott Center for Neuroscience, Mind and Behavior, Bowling Green State University, Bowling Green, OH 43403-0001, USA
- Department of Psychology, Bowling Green State University, Bowling Green, OH 43403-0001, USA
| | - Randolf Menzel
- Institute for Biology, Neurobiology, Freie Universität Berlin, 14195 Berlin, Germany
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15
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Brunk CF, Marshall CR. Opinion: The Key Steps in the Origin of Life to the Formation of the Eukaryotic Cell. Life (Basel) 2024; 14:226. [PMID: 38398735 PMCID: PMC10890422 DOI: 10.3390/life14020226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/16/2024] [Accepted: 01/29/2024] [Indexed: 02/25/2024] Open
Abstract
The path from life's origin to the emergence of the eukaryotic cell was long and complex, and as such it is rarely treated in one publication. Here, we offer a sketch of this path, recognizing that there are points of disagreement and that many transitions are still shrouded in mystery. We assume life developed within microchambers of an alkaline hydrothermal vent system. Initial simple reactions were built into more sophisticated reflexively autocatalytic food-generated networks (RAFs), laying the foundation for life's anastomosing metabolism, and eventually for the origin of RNA, which functioned as a genetic repository and as a catalyst (ribozymes). Eventually, protein synthesis developed, leading to life's biology becoming dominated by enzymes and not ribozymes. Subsequent enzymatic innovation included ATP synthase, which generates ATP, fueled by the proton gradient between the alkaline vent flux and the acidic sea. This gradient was later internalized via the evolution of the electron transport chain, a preadaptation for the subsequent emergence of the vent creatures from their microchamber cradles. Differences between bacteria and archaea suggests cellularization evolved at least twice. Later, the bacterial development of oxidative phosphorylation and the archaeal development of proteins to stabilize its DNA laid the foundation for the merger that led to the formation of eukaryotic cells.
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Affiliation(s)
- Clifford F. Brunk
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, USA
| | - Charles R. Marshall
- Department of Integrative Biology and Museum of Paleontology, University of California, Berkeley, CA 94720-4780, USA
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16
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Livnat A, Love AC. Mutation and evolution: Conceptual possibilities. Bioessays 2024; 46:e2300025. [PMID: 38254311 DOI: 10.1002/bies.202300025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 11/03/2023] [Accepted: 11/06/2023] [Indexed: 01/24/2024]
Abstract
Although random mutation is central to models of evolutionary change, a lack of clarity remains regarding the conceptual possibilities for thinking about the nature and role of mutation in evolution. We distinguish several claims at the intersection of mutation, evolution, and directionality and then characterize a previously unrecognized category: complex conditioned mutation. Empirical evidence in support of this category suggests that the historically famous fluctuation test should be revisited, and new experiments should be undertaken with emerging experimental techniques to facilitate detecting mutation rates within specific loci at an ultra-high, individual base pair resolution.
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Affiliation(s)
- Adi Livnat
- Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel
- Institute of Evolution, University of Haifa, Haifa, Israel
| | - Alan C Love
- Department of Philosophy and Minnesota Center for Philosophy of Science, University of Minnesota (Twin Cities), Minneapolis, Minnesota, USA
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17
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González-Forero M. A mathematical framework for evo-devo dynamics. Theor Popul Biol 2024; 155:24-50. [PMID: 38043588 DOI: 10.1016/j.tpb.2023.11.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 11/10/2023] [Accepted: 11/28/2023] [Indexed: 12/05/2023]
Abstract
Natural selection acts on phenotypes constructed over development, which raises the question of how development affects evolution. Classic evolutionary theory indicates that development affects evolution by modulating the genetic covariation upon which selection acts, thus affecting genetic constraints. However, whether genetic constraints are relative, thus diverting adaptation from the direction of steepest fitness ascent, or absolute, thus blocking adaptation in certain directions, remains uncertain. This limits understanding of long-term evolution of developmentally constructed phenotypes. Here we formulate a general, tractable mathematical framework that integrates age progression, explicit development (i.e., the construction of the phenotype across life subject to developmental constraints), and evolutionary dynamics, thus describing the evolutionary and developmental (evo-devo) dynamics. The framework yields simple equations that can be arranged in a layered structure that we call the evo-devo process, whereby five core elementary components generate all equations including those mechanistically describing genetic covariation and the evo-devo dynamics. The framework recovers evolutionary dynamic equations in gradient form and describes the evolution of genetic covariation from the evolution of genotype, phenotype, environment, and mutational covariation. This shows that genotypic and phenotypic evolution must be followed simultaneously to yield a dynamically sufficient description of long-term phenotypic evolution in gradient form, such that evolution described as the climbing of a fitness landscape occurs in "geno-phenotype" space. Genetic constraints in geno-phenotype space are necessarily absolute because the phenotype is related to the genotype by development. Thus, the long-term evolutionary dynamics of developed phenotypes is strongly non-standard: (1) evolutionary equilibria are either absent or infinite in number and depend on genetic covariation and hence on development; (2) developmental constraints determine the admissible evolutionary path and hence which evolutionary equilibria are admissible; and (3) evolutionary outcomes occur at admissible evolutionary equilibria, which do not generally occur at fitness landscape peaks in geno-phenotype space, but at peaks in the admissible evolutionary path where "total genotypic selection" vanishes if exogenous plastic response vanishes and mutational variation exists in all directions of genotype space. Hence, selection and development jointly define the evolutionary outcomes if absolute mutational constraints and exogenous plastic response are absent, rather than the outcomes being defined only by selection. Moreover, our framework provides formulas for the sensitivities of a recurrence and an alternative method to dynamic optimization (i.e., dynamic programming or optimal control) to identify evolutionary outcomes in models with developmentally dynamic traits. These results show that development has major evolutionary effects.
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18
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Bordoni B, Escher AR, Castellini F, Vale J. The Sentient Cell: Implications for Osteopathic Medicine. Cureus 2024; 16:e54513. [PMID: 38384870 PMCID: PMC10879650 DOI: 10.7759/cureus.54513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/20/2024] [Indexed: 02/23/2024] Open
Abstract
The Foundation of Osteopathic Research and Clinical Endorsement (FORCE) is an organization that includes various figures involved in clinical and non-profit research and does not depend on any private or government body. To better understand how the human body behaves, we need to observe cellular behavior. Considering the human body as layers, districts, and regions, or just as a machine, is severely limiting to understanding the systemic mechanisms that are implemented to maintain bodily health. For some years, FORCE has contributed several articles to the literature to support the view of a human body as a unit, a fascial continuum (solid and fluid fascia) capable of interacting consciously, and not as a passive mirror, with respect to external stresses. The article reviews the tensegrity theory applied to the cell, trying to bring to light that the mechanistic vision on which this theory is based does not meet biological reality. We review some concepts related to biology, the science that studies life, and quantum physics, the science that studies the invisible physical phenomena that underlie life. Understanding that the cells and tissues are aware of the therapeutic approaches they receive could better guide the decisions of the osteopathic clinician.
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Affiliation(s)
- Bruno Bordoni
- Physical Medicine and Rehabilitation, Foundation Don Carlo Gnocchi, Milan, ITA
| | - Allan R Escher
- Anesthesiology/Pain Medicine, H. Lee Moffitt Cancer Center and Research Institute, Tampa, USA
| | | | - Joanna Vale
- Osteopathy, Body Lab Clinica di Osteopatia, Milan, ITA
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19
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Forsdyke DR. Speciation, natural selection, and networks: three historians versus theoretical population geneticists. Theory Biosci 2024; 143:1-26. [PMID: 38282046 DOI: 10.1007/s12064-024-00412-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 01/06/2024] [Indexed: 01/30/2024]
Abstract
In 1913, the geneticist William Bateson called for a halt in studies of genetic phenomena until evolutionary fundamentals had been sufficiently addressed at the molecular level. Nevertheless, in the 1960s, the theoretical population geneticists celebrated a "modern synthesis" of the teachings of Mendel and Darwin, with an exclusive role for natural selection in speciation. This was supported, albeit with minor reservations, by historians Mark Adams and William Provine, who taught it to generations of students. In subsequent decades, doubts were raised by molecular biologists and, despite the deep influence of various mentors, Adams and Provine noted serious anomalies and began to question traditional "just-so-stories." They were joined in challenging the genetic orthodoxy by a scientist-historian, Donald Forsdyke, who suggested that a "collective variation" postulated by Darwin's young research associate, George Romanes, and a mysterious "residue" postulated by Bateson, might relate to differences in short runs of DNA bases (oligonucleotides). The dispute between a small network of historians and a large network of geneticists can be understood in the context of national politics. Contrasts are drawn between democracies, where capturing the narrative makes reversal difficult, and dictatorships, where overthrow of a supportive dictator can result in rapid reversal.
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Affiliation(s)
- Donald R Forsdyke
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L3N6, Canada.
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20
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Tanghe KB. Thomas S. Kuhn: key to a better understanding of the extended evolutionary synthesis. Theory Biosci 2024; 143:27-44. [PMID: 37978156 DOI: 10.1007/s12064-023-00409-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 10/18/2023] [Indexed: 11/19/2023]
Abstract
In recent years, some scholars have explicitly questioned the desirability or utility of applying the classical and "old-fashioned" theories of scientific change by the likes of Karl Popper and Thomas S. Kuhn to the question of the precise nature and significance of the extended evolutionary synthesis (EES). Supposedly, these twentieth-century philosophers are completely irrelevant for a better understanding of this new theoretical framework for the study of evolution. Here, it will be argued that the EES can be fruitfully interpreted in terms of, as yet, insufficiently considered or even overlooked elements from Kuhn's theory. First, in his original, historical philosophy of science, Kuhn not only distinguished between small and big scientific revolutions, he also pointed out that paradigms can be extended and reformulated. In contrast with what its name suggests, the mainstream EES can be interpreted as a Kuhnian reformulation of modern evolutionary theory. Second, it has, as yet, also been overlooked that the EES can be interpreted in terms of Kuhn's later, tentative evolutionary philosophy of science. With the EES, an old dichotomy in evolutionary biology is maybe being formalized and institutionalized.
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Affiliation(s)
- Koen B Tanghe
- UGent, Philosophy and Moral Sciences, Blandijnberg 2, Ghent, Belgium.
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21
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Pagan M, Dal Pozzolo M. From the harmony to the tension: Helmuth Plessner and Kurt Goldstein's readings of Jakob von Uexküll. HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 2024; 46:9. [PMID: 38270685 PMCID: PMC10811164 DOI: 10.1007/s40656-024-00607-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 01/01/2024] [Indexed: 01/26/2024]
Abstract
This paper investigates the reception and discussion of Jakob von Uexküll's biological theory by two German thinkers of his time, Helmuth Plessner and Kurt Goldstein. It demonstrates how their bio-philosophical perspectives are on the one hand indebted to Uexküll's theory and, on the other, critical of its tendency to excessively harmonize the relationship between living beings and their environment. This original critical reading of the Umweltlehre is rooted in ambiguities within Uexküll's own thought - between a dynamic conception of the organism-environment relationship and the idea of "conformity to a plan" -, , which is here examined in the second section. In the third and fourth sections we will then focus on Plessner and Goldstein respectively, demonstrating how for these two authors the harmony between organism and environment is not an original state, but only reveals itself against the background of a tension; as such, it can only be partial, unstable and always changing. The two thinkers avoid the rigid alternative between Darwin's concept of adaptation (Anpassung) and Uexküll's "fitting into" (Einpassung) by theorizing the ideal state of the relationship between organism and environment in terms of "adequacy" (Adäquatheit) and "adaptability" (Adaptiertheit). Between organism and environment there is neither absolute separation nor perfect harmony, but rather a gap which can never be definitively fixed.
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Affiliation(s)
- Matteo Pagan
- Scuola Normale Superiore, Pisa, Italy.
- École des Hautes Études en Sciences Sociales, Paris, France.
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22
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Schoenmakers LLJ, Reydon TAC, Kirschning A. Evolution at the Origins of Life? Life (Basel) 2024; 14:175. [PMID: 38398684 PMCID: PMC10890241 DOI: 10.3390/life14020175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 01/19/2024] [Accepted: 01/23/2024] [Indexed: 02/25/2024] Open
Abstract
The role of evolutionary theory at the origin of life is an extensively debated topic. The origin and early development of life is usually separated into a prebiotic phase and a protocellular phase, ultimately leading to the Last Universal Common Ancestor. Most likely, the Last Universal Common Ancestor was subject to Darwinian evolution, but the question remains to what extent Darwinian evolution applies to the prebiotic and protocellular phases. In this review, we reflect on the current status of evolutionary theory in origins of life research by bringing together philosophy of science, evolutionary biology, and empirical research in the origins field. We explore the various ways in which evolutionary theory has been extended beyond biology; we look at how these extensions apply to the prebiotic development of (proto)metabolism; and we investigate how the terminology from evolutionary theory is currently being employed in state-of-the-art origins of life research. In doing so, we identify some of the current obstacles to an evolutionary account of the origins of life, as well as open up new avenues of research.
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Affiliation(s)
- Ludo L. J. Schoenmakers
- Konrad Lorenz Institute for Evolution and Cognition Research (KLI), 3400 Klosterneuburg, Austria
| | - Thomas A. C. Reydon
- Institute of Philosophy, Centre for Ethics and Law in the Life Sciences (CELLS), Leibniz University Hannover, 30159 Hannover, Germany;
| | - Andreas Kirschning
- Institute of Organic Chemistry, Leibniz University Hannover, 30167 Hannover, Germany;
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23
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Majolo B. The intertwined nature of peace and war. Behav Brain Sci 2024; 47:e17. [PMID: 38224057 DOI: 10.1017/s0140525x23002583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2024]
Abstract
Glowacki discusses how humans regularly face collective action problems that may result in either peaceful or aggressive between-group interactions. Peace and war probably coevolved in humans. Using a gene-culture evolutionary framework is a powerful way to analyse why, when, and how humans have the capacity to build and maintain long-term peaceful interactions between groups and also to wage deadly wars.
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Affiliation(s)
- Bonaventura Majolo
- School of Psychology, University of Lincoln, Lincoln, UK ; https://staff.lincoln.ac.uk/bmajolo
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24
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Stahlman WD, Leising KJ. The behavioral origins of phylogenic responses and ontogenic habits. J Exp Anal Behav 2024; 121:27-37. [PMID: 38010287 DOI: 10.1002/jeab.892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 11/09/2023] [Indexed: 11/29/2023]
Abstract
An examination of innate behavior and its possible origins suggests parallels with the formation of habitual behavior. Inflexible but adaptive responses-innate reflexive behavior, Pavlovian conditioned responses, and operant habits-may have evolved from variable behavior in phylogeny and ontogeny. This form of "plasticity-first" scientific narrative was unpopular post-Darwin but has recently gained credibility in evolutionary biology. The present article seeks to identify originating events and contingencies contributing to such inflexible but adaptive behavior at both phylogenic and ontogenic levels of selection. In ontogeny, the development of inflexible performance (i.e., habit) from variable operant behavior is reminiscent of the genetic accommodation of initially variable phylogenic traits. The effects characteristic of habit (e.g., unresponsiveness to reinforcer devaluation) are explicable as the result of a conflict between behaviors at distinct levels of selection. The present interpretation validates the practice of seeking hard analogies between evolutionary biology and operant behavior. Finding such parallels implies the validity of a claim that organismal behavior, both innate and learned, is a product of selection by consequences. A complete and coherent account of organismal behavior may ultimately focus on functional selective histories in much the same way evolutionary biology does with its subject matter.
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Affiliation(s)
- W David Stahlman
- University of Mary Washington-Department of Psychological Science, Fredericksburg, VA, USA
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25
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Kemp R, van Lente H. Innovation for sustainability: how actors are myopically caught in processes of co-evolution. Philos Trans R Soc Lond B Biol Sci 2024; 379:20220270. [PMID: 37952629 PMCID: PMC10645083 DOI: 10.1098/rstb.2022.0270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 07/05/2023] [Indexed: 11/14/2023] Open
Abstract
In this paper, we argue that the development, uptake and adoption of innovations resembles an evolutionary process of variation, selection and retention (within broader processes of co-evolution) in which actors are myopically caught. We do so in four steps. First, we review in what ways socio-technical evolution resembles biological evolution. Second, we argue that in socio-technical evolution so-called 'configurations that work' can be viewed as evolutionary units, which are subject to selection pressures, variation and human-made couplings between variation and selection. This explains why innovation is often cumulative, based on variation and recombination. Third, we discuss how producers, consumers, governments and scientists are myopically caught in processes of co-evolution. While humans are capable of imagining the need for system change and details of desired systems, they are less capable of accepting the concomitant higher costs and inconveniences and adopt new interpretive schemes. Fourth, in a pluralist world, steering is done by all kind of actors, including those who actively resist transformative change. Because of this, steering by government and coalitions of change can achieve little more than a modulation of ongoing dynamics, despite disturbing evidence of a run-away climate, mass extinction, pervasive ecological degradation and steady depletion of resources. A new consciousness of the Anthropocene can evoke fundamental changes in science and the economy if-and only if-they are sufficiently carried by institutional changes and new practices. This article is part of the theme issue 'Evolution and sustainability: gathering the strands for an Anthropocene synthesis'.
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Affiliation(s)
- René Kemp
- UNU-MERIT, Maastricht University, Maastricht, Limburg 6211 AX, The Netherlands
- MSI, Maastricht University, Maastricht, Limburg 6211 AX, The Netherlands
| | - Harro van Lente
- FASOS, Maastricht University, Maastricht, Limburg 6211 AX, The Netherlands
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26
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Søgaard Jørgensen P, Weinberger VP, Waring TM. Evolution and sustainability: gathering the strands for an Anthropocene synthesis. Philos Trans R Soc Lond B Biol Sci 2024; 379:20220251. [PMID: 37952619 PMCID: PMC10645096 DOI: 10.1098/rstb.2022.0251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 10/18/2023] [Indexed: 11/14/2023] Open
Abstract
How did human societies evolve to become a major force of global change? What dynamics can lead societies on a trajectory of global sustainability? The astonishing growth in human population, economic activity and environmental impact has brought these questions to the fore. This theme issue pulls together a variety of traditions that seek to address these questions using different theories and methods. In this Introduction, we review and organize the major strands of work on how the Anthropocene evolved, how evolutionary dynamics are influencing sustainability efforts today, and what principles, strategies and capacities will be important to guide us towards global sustainability in the future. We present a set of synthetic insights and highlight frontiers for future research efforts which could contribute to a consolidated synthesis. This article is part of the theme issue 'Evolution and sustainability: gathering the strands for an Anthropocene synthesis'.
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Affiliation(s)
- Peter Søgaard Jørgensen
- Stockholm Resilience Centre, Stockholm University, Stockholm, Stockholm 10691, Sweden
- Global Economic Dynamics and the Biosphere, Royal Swedish Academy of Sciences, Stockholm, Stockholm 10405, Sweden
- Anthropocene Laboratory, Royal Swedish Academy of Sciences, Stockholm, Stockholm 10405, Sweden
| | - Vanessa P. Weinberger
- Center for Resilience, Adaptation and Mitigation (CReAM), Universidad Mayor, Temuco, 4801043, Chile
| | - Timothy M. Waring
- Mitchell Center for Sustainability Solutions, University of Maine Orono, ME 04473, USA
- School of Economics, University of Maine Orono, ME 04473, USA
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27
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Ellis EC. The Anthropocene condition: evolving through social-ecological transformations. Philos Trans R Soc Lond B Biol Sci 2024; 379:20220255. [PMID: 37952626 PMCID: PMC10645118 DOI: 10.1098/rstb.2022.0255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 09/13/2023] [Indexed: 11/14/2023] Open
Abstract
Anthropogenic planetary disruptions, from climate change to biodiversity loss, are unprecedented challenges for human societies. Some societies, social groups, cultural practices, technologies and institutions are already disintegrating or disappearing as a result. However, this coupling of socially produced environmental challenges with disruptive social changes-the Anthropocene condition-is not new. From food-producing hunter-gatherers, to farmers, to urban industrial food systems, the current planetary entanglement has its roots in millennia of evolving and accumulating sociocultural capabilities for shaping the cultured environments that our societies have always lived in (sociocultural niche construction). When these transformative capabilities to shape environments are coupled with sociocultural adaptations enabling societies to more effectively shape and live in transformed environments, the social-ecological scales and intensities of these transformations can accelerate through a positive feedback loop of 'runaway sociocultural niche construction'. Efforts to achieve a better future for both people and planet will depend on guiding this runaway evolutionary process towards better outcomes by redirecting Earth's most disruptive force of nature: the power of human aspirations. To guide this unprecedented planetary force, cultural narratives that appeal to human aspirations for a better future will be more effective than narratives of environmental crisis and overstepping natural boundaries. This article is part of the theme issue 'Evolution and sustainability: gathering the strands for an Anthropocene synthesis'.
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Affiliation(s)
- Erle C. Ellis
- Department of Geography & Environmental Systems, University of Maryland, Baltimore County, Baltimore, MD 21250, USA
- Oxford Martin School, University of Oxford, 34 Broad St, Oxford OX1 3BD, UK
- Leverhulme Centre for Nature Recovery, Environmental Change Institute, School of Geography & Environment, University of Oxford, South Parks Road, Oxford OX1 3QY, UK
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28
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Vargas AO, Botelho JF, Mpodozis J. The evolutionary consequences of epigenesis and neutral change: A conceptual approach at the organismal level. JOURNAL OF EXPERIMENTAL ZOOLOGY. PART B, MOLECULAR AND DEVELOPMENTAL EVOLUTION 2023; 340:531-540. [PMID: 33382199 DOI: 10.1002/jez.b.23023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 09/25/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
Living beings are autopoietic systems with highly context-dependent structural dynamics and interactions, that determine whether a disturbance in the genotype or environment will lead or not to phenotypic change. The concept of epigenesis entails how a change in the phenotype may not correspond to a change in the structure of an earlier developmental stage, including the genome. Disturbances of embryonic structure may fail to change the phenotype, as in regulated development, or when different genotypes are associated to a single phenotype. Likewise, the same genotype or early embryonic structure may develop different phenotypes, as in phenotypic plasticity. Disturbances that fail to trigger phenotypic change are considered neutral, but even so, they can alter unexpressed developmental potential. Here, we present conceptual diagrams of the "epigenic field": similar to Waddington's epigenetic landscapes, but including the ontogenic niche (organism/environment interactional dynamics during ontogeny) as a factor in defining epigenic fields, rather than just selecting among possible pathways. Our diagrams illustrate transgenerational changes of genotype, ontogenic niche, and their correspondence (or lack thereof) with changes of phenotype. Epigenic fields provide a simple way to understand developmental constraints on evolution, for instance: how constraints evolve as a result of developmental system drift; how neutral changes can be involved in genetic assimilation and de-assimilation; and how constraints can evolve as a result of neutral changes in the ontogenic niche (not only the genotype). We argue that evolutionary thinking can benefit from a framework for evolution with conceptual foundations at the organismal level.
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Affiliation(s)
- Alexander O Vargas
- Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
| | - Joao F Botelho
- Departamento de Biología Celular y Molecular, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Jorge Mpodozis
- Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
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29
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Meuthen D, Salahinejad A, Chivers DP, Ferrari MCO. Transgenerational plasticity of exploratory behavior and a hidden cost of mismatched risk environments between parental sexes. Sci Rep 2023; 13:19737. [PMID: 37957198 PMCID: PMC10643415 DOI: 10.1038/s41598-023-46269-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 10/30/2023] [Indexed: 11/15/2023] Open
Abstract
We require a better understanding of the relative contribution of different modes of non-genetic inheritance in behavioral trait development. Thus, we investigate variation in exploratory behavior, which is ecologically relevant and a target of selection. The metabolic hypothesis predicts exploratory behavior to be size-dependent across taxa. This size-dependency is cancelled out under high perceived risk, allowing us to determine the transgenerationally integrated estimated level of risk. Using fathead minnows Pimephales promelas, we manipulated perceived risk in mothers, fathers, caring males and offspring through continuous exposure to either conspecific alarm cues or to a control water treatment. In 1000 four-month old offspring, we determined body sizes and exploratory behavior. Perceived high risk in mothers, followed by personal risk, was most effective in eliminating size-dependent behavior whereas effects of paternal risk on offspring behavioral development were substantially weaker. When maternal risk is high, environmental mismatches between parents prevented offspring from responding appropriately to personal high risk. The environment of the caring male also impacted offspring behavior to a greater extent than that of its genetic parents. Our study highlights the high relative importance of maternal, personal and caring male risk environments and showcases potential costs of an environmental mismatch between parental sexes.
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Affiliation(s)
- Denis Meuthen
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK, S7N 5E2, Canada.
- Evolutionary Biology, Bielefeld University, Konsequenz 45, 33615, Bielefeld, Germany.
| | - Arash Salahinejad
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK, S7N 5E2, Canada
| | - Douglas P Chivers
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK, S7N 5E2, Canada
| | - Maud C O Ferrari
- Department of Veterinary Biomedical Sciences, WCVM, University of Saskatchewan, 52 Campus Drive, Saskatoon, SK, S7N 5B4, Canada
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30
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Watson R. Agency, Goal-Directed Behavior, and Part-Whole Relationships in Biological Systems. BIOLOGICAL THEORY 2023; 19:22-36. [PMID: 38463532 PMCID: PMC10920425 DOI: 10.1007/s13752-023-00447-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 08/17/2023] [Indexed: 03/12/2024]
Abstract
In this essay we aim to present some considerations regarding a minimal but concrete notion of agency and goal-directed behavior that are useful for characterizing biological systems at different scales. These considerations are a particular perspective, bringing together concepts from dynamical systems, combinatorial problem-solving, and connectionist learning with an emphasis on the relationship between parts and wholes. This perspective affords some ways to think about agents that are concrete and quantifiable, and relevant to some important biological issues. Instead of advocating for a strict definition of minimally agential characteristics, we focus on how (even for a modest notion of agency) the agency of a system can be more than the sum of the agency of its parts. We quantify this in terms of the problem-solving competency of a system with respect to resolution of the frustrations between its parts. This requires goal-directed behavior in the sense of delayed gratification, i.e., taking dynamical trajectories that forego short-term gains (or sustain short-term stress or frustration) in favor of long-term gains. In order for this competency to belong to the system (rather than to its parts or given by its construction or design), it can involve distributed systemic knowledge that is acquired through experience, i.e., changes in the organization of the relationships among its parts (without presupposing a system-level reward function for such changes). This conception of agency helps us think about the ways in which cells, organisms, and perhaps other biological scales, can be agential (i.e., more agential than their parts) in a quantifiable sense, without denying that the behavior of the whole depends on the behaviors of the parts in their current organization.
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Affiliation(s)
- Richard Watson
- Institute for Life Sciences/Electronics and Computer Science, University of Southampton, Southampton, UK
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31
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van Heijst K, Kret ME, Ploeger A. Basic Emotions or Constructed Emotions: Insights From Taking an Evolutionary Perspective. PERSPECTIVES ON PSYCHOLOGICAL SCIENCE 2023:17456916231205186. [PMID: 37916982 DOI: 10.1177/17456916231205186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
The ongoing debate between basic emotion theories (BETs) and the theory of constructed emotion (TCE) hampers progress in the field of emotion research. Providing a new perspective, here we aim to bring the theories closer together by dissecting them according to Tinbergen's four questions to clarify a focus on their evolutionary basis. On the basis of our review of the literature, we conclude that whereas BETs focus on the evolution question of Tinbergen, the TCE is more concerned with the causation of emotion. On the survival value of emotions both theories largely agree: to provide the best reaction in specific situations. Evidence is converging on the evolutionary history of emotions but is still limited for both theories-research within both frameworks focuses heavily on the causation. We conclude that BETs and the TCE explain two different phenomena: emotion and feeling. Therefore, they seem irreconcilable but possibly supplementary for explaining and investigating the evolution of emotion-especially considering their similar answer to the question of survival value. Last, this article further highlights the importance of carefully describing what aspect of emotion is being discussed or studied. Only then can evidence be interpreted to converge toward explaining emotion.
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Affiliation(s)
| | - Mariska E Kret
- Cognitive Psychology Unit, Faculty of Social and Behavioral Sciences, Leiden University
- Comparative Psychology and Affective Neuroscience Lab, Cognitive Psychology Department, Leiden University
- Leiden Institute for Brain and Cognition (LIBC), Leiden University
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32
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Moore DS. On the evolution of epigenetics via exaptation: A developmental systems perspective. Ann N Y Acad Sci 2023; 1529:21-32. [PMID: 37750405 DOI: 10.1111/nyas.15065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
Abstract
Evolution and development are interrelated processes influenced by genomic, epigenetic, and environmental factors. Epigenetic processes serve critical roles in development and operate as intermediaries that connect the genome to the rest of the world. Therefore, it is of interest to consider the evolution of epigenetic processes. The developmental systems perspective offers a distinctive, coherent, integrative way to understand the relationships between evolution, epigenetics, development, and the effects of experienced contexts. By adopting this perspective, this paper draws attention to the role of exaptation in the evolution of epigenetics in the RNA world and addresses the role of epigenetics in the later evolution of developmental processes such as cellular differentiation, learning, and memory. In so doing, the paper considers the appearance and functions of epigenetics in evolutionary history-sketching a pathway by which epigenetic processes might have evolved via exaptation and then contributed to the later development and evolution of phenotypes.
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Affiliation(s)
- David S Moore
- Psychology Field Group, Pitzer College, Claremont, California, USA
- Division of Behavioral & Organizational Sciences, Claremont Graduate University, Claremont, California, USA
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Snell-Rood EC, Ehlman SM. Developing the genotype-to-phenotype relationship in evolutionary theory: A primer of developmental features. Evol Dev 2023; 25:393-409. [PMID: 37026670 DOI: 10.1111/ede.12434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 02/09/2023] [Accepted: 03/16/2023] [Indexed: 04/08/2023]
Abstract
For decades, there have been repeated calls for more integration across evolutionary and developmental biology. However, critiques in the literature and recent funding initiatives suggest this integration remains incomplete. We suggest one way forward is to consider how we elaborate the most basic concept of development, the relationship between genotype and phenotype, in traditional models of evolutionary processes. For some questions, when more complex features of development are accounted for, predictions of evolutionary processes shift. We present a primer on concepts of development to clarify confusion in the literature and fuel new questions and approaches. The basic features of development involve expanding a base model of genotype-to-phenotype to include the genome, space, and time. A layer of complexity is added by incorporating developmental systems, including signal-response systems and networks of interactions. The developmental emergence of function, which captures developmental feedbacks and phenotypic performance, offers further model elaborations that explicitly link fitness with developmental systems. Finally, developmental features such as plasticity and developmental niche construction conceptualize the link between a developing phenotype and the external environment, allowing for a fuller inclusion of ecology in evolutionary models. Incorporating aspects of developmental complexity into evolutionary models also accommodates a more pluralistic focus on the causal importance of developmental systems, individual organisms, or agents in generating evolutionary patterns. Thus, by laying out existing concepts of development, and considering how they are used across different fields, we can gain clarity in existing debates around the extended evolutionary synthesis and pursue new directions in evolutionary developmental biology. Finally, we consider how nesting developmental features in traditional models of evolution can highlight areas of evolutionary biology that need more theoretical attention.
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Affiliation(s)
- Emilie C Snell-Rood
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, Minnesota, USA
| | - Sean M Ehlman
- Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, Minnesota, USA
- SCIoI Excellence Cluster, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Humboldt University, Berlin, Germany
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Nadolski EM, Moczek AP. Promises and limits of an agency perspective in evolutionary developmental biology. Evol Dev 2023; 25:371-392. [PMID: 37038309 DOI: 10.1111/ede.12432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 01/23/2023] [Accepted: 03/02/2023] [Indexed: 04/12/2023]
Abstract
An agent-based perspective in the study of complex systems is well established in diverse disciplines, yet is only beginning to be applied to evolutionary developmental biology. In this essay, we begin by defining agency and associated terminology formally. We then explore the assumptions and predictions of an agency perspective, apply these to select processes and key concept areas relevant to practitioners of evolutionary developmental biology, and consider the potential epistemic roles that an agency perspective might play in evo devo. Throughout, we discuss evidence supportive of agential dynamics in biological systems relevant to evo devo and explore where agency thinking may enrich the explanatory reach of research efforts in evolutionary developmental biology.
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Affiliation(s)
- Erica M Nadolski
- Department of Biology, Indiana University, Bloomington, Indiana, USA
| | - Armin P Moczek
- Department of Biology, Indiana University, Bloomington, Indiana, USA
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McWhinnie K, Negi D, Tanner KE, Parsons KJ. Functional trait plasticity diverges between sexes in African cichlids: A contribution toward ecological sexual dimorphism? Ecol Evol 2023; 13:e10702. [PMID: 38034329 PMCID: PMC10682861 DOI: 10.1002/ece3.10702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 08/02/2023] [Accepted: 08/17/2023] [Indexed: 12/02/2023] Open
Abstract
Phenotypic plasticity enables development to produce multiple phenotypes in response to environmental conditions. Plasticity driven variation has been suggested to play a key role in adaptive divergence, and plasticity itself can evolve. However, the interaction of plasticity with the multiple levels involved with adaptive divergence is less understood. For example, sexual dimorphism can contribute adaptive variation through ecological sexual dimorphism (ESD), but the contribution of plasticity to this phenomenon is unknown. Therefore, to determine the potential contribution of plasticity to ESD, we used the adaptive radiation of Malawi cichlids. Two mouthbrooding species (Labeotropheus fuelleborni and Tropheops "Red Cheek") with differences in foraging tactics underwent foraging experiments using benthic and limnetic treatments while accounting for sex. Plasticity in craniofacial shape and three functionally important traits were measured. Plasticity was shown, but without any sex-based differences in shape. However, for mechanical advantage traits of the mandible sex by diet interactions were found. This suggests that ESD, may be influenced by phenotypic plasticity that diverges between sexes. Given the involvement of the mandible in parental care in cichlids this may indicate that sexual divergence in plasticity may trade-off against maternal care tactics.
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Affiliation(s)
- Kirsty McWhinnie
- Institute of Biodiversity, Animal Health, and Comparative MedicineUniversity of GlasgowGlasgowUK
| | - Deepti Negi
- Institute of Biodiversity, Animal Health, and Comparative MedicineUniversity of GlasgowGlasgowUK
| | - K. Elizabeth Tanner
- Institute of Biodiversity, Animal Health, and Comparative MedicineUniversity of GlasgowGlasgowUK
- School of Engineering and Materials ScienceQueen Mary University of LondonLondonUK
| | - Kevin J. Parsons
- Institute of Biodiversity, Animal Health, and Comparative MedicineUniversity of GlasgowGlasgowUK
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Erkosar B, Dupuis C, Cavigliasso F, Savary L, Kremmer L, Gallart-Ayala H, Ivanisevic J, Kawecki TJ. Evolutionary adaptation to juvenile malnutrition impacts adult metabolism and impairs adult fitness in Drosophila. eLife 2023; 12:e92465. [PMID: 37847744 PMCID: PMC10637773 DOI: 10.7554/elife.92465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2023] [Accepted: 10/12/2023] [Indexed: 10/19/2023] Open
Abstract
Juvenile undernutrition has lasting effects on adult metabolism of the affected individuals, but it is unclear how adult physiology is shaped over evolutionary time by natural selection driven by juvenile undernutrition. We combined RNAseq, targeted metabolomics, and genomics to study the consequences of evolution under juvenile undernutrition for metabolism of reproductively active adult females of Drosophila melanogaster. Compared to Control populations maintained on standard diet, Selected populations maintained for over 230 generations on a nutrient-poor larval diet evolved major changes in adult gene expression and metabolite abundance, in particular affecting amino acid and purine metabolism. The evolved differences in adult gene expression and metabolite abundance between Selected and Control populations were positively correlated with the corresponding differences previously reported for Selected versus Control larvae. This implies that genetic variants affect both stages similarly. Even when well fed, the metabolic profile of Selected flies resembled that of flies subject to starvation. Finally, Selected flies had lower reproductive output than Controls even when both were raised under the conditions under which the Selected populations evolved. These results imply that evolutionary adaptation to juvenile undernutrition has large pleiotropic consequences for adult metabolism, and that they are costly rather than adaptive for adult fitness. Thus, juvenile and adult metabolism do not appear to evolve independently from each other even in a holometabolous species where the two life stages are separated by a complete metamorphosis.
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Affiliation(s)
- Berra Erkosar
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
| | - Cindy Dupuis
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
| | - Fanny Cavigliasso
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
| | - Loriane Savary
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
| | - Laurent Kremmer
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
| | - Hector Gallart-Ayala
- Metabolomics Unit, Faculty of Biology and Medicine, University of LausanneLausanneSwitzerland
| | - Julijana Ivanisevic
- Metabolomics Unit, Faculty of Biology and Medicine, University of LausanneLausanneSwitzerland
| | - Tadeusz J Kawecki
- Department of Ecology and Evolution, University of LausanneLausanneSwitzerland
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Greslehner GP. "Molecular Biology"-Pleonasm or Denotation for a Discipline of Its Own? Reflections on the Origins of Molecular Biology and Its Situation Today. Biomolecules 2023; 13:1511. [PMID: 37892193 PMCID: PMC10605324 DOI: 10.3390/biom13101511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 10/05/2023] [Accepted: 10/07/2023] [Indexed: 10/29/2023] Open
Abstract
The disciplinary identity of molecular biology has frequently been called into question. Although the debates might sometimes have been more about creating or debunking myths, defending intellectual territory and the distribution of resources, there are interesting underlying questions about this area of biology and how it is conceptually organized. By looking at the history of molecular biology, its origins and development, I examine the possible criteria for its status as a scientific discipline. Doing so allows us to answer the title question in such a way that offers a reasonable middle ground, where molecular biology can be properly viewed as a viable interdisciplinary program that can very well be called a discipline in its own right, even if no strict boundaries can be established. In addition to this historical analysis, a couple of systematic issues from a philosophy of science perspective allow for some assessment of the current situation and the future of molecular biology.
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Affiliation(s)
- Gregor P Greslehner
- Department of Philosophy, University of Vienna, Universitätsstraße 7, 1010 Vienna, Austria
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Machado FA, Mongle CS, Slater G, Penna A, Wisniewski A, Soffin A, Dutra V, Uyeda JC. Rules of teeth development align microevolution with macroevolution in extant and extinct primates. Nat Ecol Evol 2023; 7:1729-1739. [PMID: 37652997 DOI: 10.1038/s41559-023-02167-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 07/17/2023] [Indexed: 09/02/2023]
Abstract
Macroevolutionary biologists have classically rejected the notion that higher-level patterns of divergence arise through microevolutionary processes acting within populations. For morphology, this consensus partly derives from the inability of quantitative genetics models to correctly predict the behaviour of evolutionary processes at the scale of millions of years. Developmental studies (evo-devo) have been proposed to reconcile micro- and macroevolution. However, there has been little progress in establishing a formal framework to apply evo-devo models of phenotypic diversification. Here we reframe this issue by asking whether using evo-devo models to quantify biological variation can improve the explanatory power of comparative models, thus helping us bridge the gap between micro- and macroevolution. We test this prediction by evaluating the evolution of primate lower molars in a comprehensive dataset densely sampled across living and extinct taxa. Our results suggest that biologically informed morphospaces alongside quantitative genetics models allow a seamless transition between the micro- and macroscales, whereas biologically uninformed spaces do not. We show that the adaptive landscape for primate teeth is corridor like, with changes in morphology within the corridor being nearly neutral. Overall, our framework provides a basis for integrating evo-devo into the modern synthesis, allowing an operational way to evaluate the ultimate causes of macroevolution.
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Affiliation(s)
- Fabio A Machado
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, USA.
| | - Carrie S Mongle
- Department of Anthropology, Stony Brook University, Stony Brook, NY, USA
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY, USA
| | - Graham Slater
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
| | - Anna Penna
- Department of Anthropology, University of Texas at San Antonio, San Antonio, TX, USA
| | - Anna Wisniewski
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
| | - Anna Soffin
- Department of Biology, Virginia Tech, Blacksburg, VA, USA
| | - Vitor Dutra
- Department of Anthropology, Florida Atlantic University, Boca Raton, FL, USA
| | - Josef C Uyeda
- Department of Biology, Virginia Tech, Blacksburg, VA, USA
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Chen P, Zhang J. Transcriptomic analysis reveals the rareness of genetic assimilation of gene expression in environmental adaptations. SCIENCE ADVANCES 2023; 9:eadi3053. [PMID: 37756399 PMCID: PMC10530075 DOI: 10.1126/sciadv.adi3053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 08/25/2023] [Indexed: 09/29/2023]
Abstract
Genetic assimilation is the evolutionary process by which an environmentally induced phenotype becomes genetically encoded and constitutive. Genetic assimilation has been proposed as a concluding step in environmental adaptation, but its prevalence has not been systematically investigated. Analyzing transcriptomic data collected upon reciprocal transplant, we address this question in the experimental evolution, domestication, or natural evolution of seven diverse species. We find that genetic assimilation of environment-induced gene expression is the exception rather than the rule and that substantially more genes retain than lose their expression plasticity upon organismal adaptations to new environments. The probability of genetic assimilation of gene expression decreases with the expression level and number of transcription factors controlling the gene, suggesting that genetic assimilation results primarily from passive losses of gene regulations that are not mutationally robust. Hence, for gene expression, our findings argue against the purported generality or importance of genetic assimilation to environmental adaptation.
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Affiliation(s)
- Piaopiao Chen
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA
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Lecointre G, Aish A, Améziane N, Chekchak T, Goupil C, Grandcolas P, Vincent JFV, Sun JS. Revisiting Nature's "Unifying Patterns": A Biological Appraisal. Biomimetics (Basel) 2023; 8:362. [PMID: 37622967 PMCID: PMC10452652 DOI: 10.3390/biomimetics8040362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 08/03/2023] [Accepted: 08/08/2023] [Indexed: 08/26/2023] Open
Abstract
Effective bioinspiration requires dialogue between designers and biologists, and this dialogue must be rooted in a shared scientific understanding of living systems. To support learning from "nature's overarching design lessons" the Biomimicry Institute has produced ten "Unifying Patterns of Nature". These patterns have been developed to engage with those interested in finding biologically inspired solutions to human challenges. Yet, although well-intentioned and appealing, they are likely to dishearten biologists. The aim of this paper is to identify why and propose alternative principles based on evolutionary theory.
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Affiliation(s)
- Guillaume Lecointre
- Institut de Systématique, Évolution et Biodiversité, UMR ISYEB 7205 CNRS MNHN SU EPHE UA, Muséum National d’Histoire Naturelle, CP 50, 45 Rue Buffon, 75005 Paris, France
| | - Annabelle Aish
- Bioinspire-Museum, Direction Générale Déléguée à la Recherche, l’Expertise, la Valorisation et l’Enseignement (DGD REVE), Muséum National d’Histoire Naturelle, 57 Rue Cuvier, CP 17, 75005 Paris, France
| | - Nadia Améziane
- Institut de Systématique, Évolution et Biodiversité, UMR ISYEB 7205 CNRS MNHN SU EPHE UA, Muséum National d’Histoire Naturelle, CP 50, 45 Rue Buffon, 75005 Paris, France
| | - Tarik Chekchak
- Institut des Futurs Souhaitables, 127 Avenue Ledru Rollin, 75011 Paris, France
| | - Christophe Goupil
- Laboratoire Interdisciplinaire des Énergies de Demain (LIED), UMR 8236 CNRS, Université Paris-Cité, 75013 Paris, France
| | - Philippe Grandcolas
- Institut de Systématique, Évolution et Biodiversité, UMR ISYEB 7205 CNRS MNHN SU EPHE UA, Muséum National d’Histoire Naturelle, CP 50, 45 Rue Buffon, 75005 Paris, France
| | - Julian F. V. Vincent
- Nature Inspired Manufacturing Centre, School of Engineering, Heriot-Watt University, Edinburgh EH14 4AS, UK
| | - Jian-Sheng Sun
- Structure et Instabilité des Génomes, UMR 7196—U1154, MNHN CNRS INSERM, Muséum National d’Histoire Naturelle, 43 Rue Cuvier, 75005 Paris, France
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Majic P, Payne JL. Developmental Selection and the Perception of Mutation Bias. Mol Biol Evol 2023; 40:msad179. [PMID: 37556606 PMCID: PMC10443735 DOI: 10.1093/molbev/msad179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 07/22/2023] [Accepted: 07/26/2023] [Indexed: 08/11/2023] Open
Abstract
The notion that mutations are random relative to their fitness effects is central to the Neo-Darwinian view of evolution. However, a recent interpretation of the patterns of mutation accumulation in the genome of Arabidopsis thaliana has challenged this notion, arguing for the presence of a targeted DNA repair mechanism that causes a nonrandom association of mutation rates and fitness effects. Specifically, this mechanism was suggested to cause a reduction in the rates of mutations on essential genes, thus lowering the rates of deleterious mutations. Central to this argument were attempts to rule out selection at the population level. Here, we offer an alternative and parsimonious interpretation of the patterns of mutation accumulation previously attributed to mutation bias, showing how they can instead or additionally be caused by developmental selection, that is selection occurring at the cellular level during the development of a multicellular organism. Thus, the depletion of deleterious mutations in A. thaliana may indeed be the result of a selective process, rather than a bias in mutation. More broadly, our work highlights the importance of considering development in the interpretation of population-genetic analyses of multicellular organisms, and it emphasizes that efforts to identify mechanisms involved in mutational biases should explicitly account for developmental selection.
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Affiliation(s)
- Paco Majic
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Joshua L Payne
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
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Hadad E, Balaban A, Yosef R. Alloparenting by Helpers in Striped Hyena ( Hyaena hyaena). Animals (Basel) 2023; 13:1914. [PMID: 37370424 DOI: 10.3390/ani13121914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 06/01/2023] [Accepted: 06/05/2023] [Indexed: 06/29/2023] Open
Abstract
In an ongoing study of the striped hyena (Hyaena hyaena), we observed that in the nine different females, alloparenting by the daughters of a previous litter was not uncommon and occurred on fifteen different occasions, twice with two helpers. Alloparenting persisted from when the cubs are approximately a month old until they reach the age when they go out foraging with their mothers at 10-12 months. Helpers perform most maternal duties, except suckling, even in the mother's presence. Helpers accrued indirect fitness and practiced parenting before reaching sexual maturity. Future studies must study the reproductive biology of the striped hyena in the wild throughout its geographic range to elucidate additional breeding properties that have not yet been identified. The continued persecution of striped hyenas and the lack of information about their breeding rituals and capabilities in the wild mean that this study of their different reproduction strategies, focusing on surrogate mothers, is of great conservation importance. The fact that we have found cooperative breeding in this solitary species suggests that there is much more to uncover of the enigmatic striped hyena in the wild.
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Affiliation(s)
- Ezra Hadad
- Israel Nature and Parks Authority, 3 Am Ve'Olamo Street, Jerusalem 95463, Israel
| | - Amir Balaban
- Society for the Protection of Nature in Israel, Tel Aviv 66186, Israel
| | - Reuven Yosef
- Eilat Campus, Ben Gurion University of the Negev, Eilat 88100, Israel
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Mosquera KD, Martínez Villegas LE, Rocha Fernandes G, Rocha David M, Maciel-de-Freitas R, A Moreira L, Lorenzo MG. Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites. BMC Biol 2023; 21:97. [PMID: 37101136 PMCID: PMC10134544 DOI: 10.1186/s12915-023-01605-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 04/18/2023] [Indexed: 04/28/2023] Open
Abstract
BACKGROUND Aedes aegypti, the main arboviral mosquito vector, is attracted to human dwellings and makes use of human-generated breeding sites. Past research has shown that bacterial communities associated with such sites undergo compositional shifts as larvae develop and that exposure to different bacteria during larval stages can have an impact on mosquito development and life-history traits. Based on these facts, we hypothesized that female Ae. aegypti shape the bacteria communities of breeding sites during oviposition as a form of niche construction to favor offspring fitness. RESULTS To test this hypothesis, we first verified that gravid females can act as mechanical vectors of bacteria. We then elaborated an experimental scheme to test the impact of oviposition on breeding site microbiota. Five different groups of experimental breeding sites were set up with a sterile aqueous solution of larval food, and subsequently exposed to (1) the environment alone, (2) surface-sterilized eggs, (3) unsterilized eggs, (4) a non-egg laying female, or (5) oviposition by a gravid female. The microbiota of these differently treated sites was assessed by amplicon-oriented DNA sequencing once the larvae from the sites with eggs had completed development and formed pupae. Microbial ecology analyses revealed significant differences between the five treatments in terms of diversity. In particular, between-treatment shifts in abundance profiles were detected, showing that females induce a significant decrease in microbial alpha diversity through oviposition. In addition, indicator species analysis pinpointed bacterial taxa with significant predicting values and fidelity coefficients for the samples in which single females laid eggs. Furthermore, we provide evidence regarding how one of these indicator taxa, Elizabethkingia, exerts a positive effect on the development and fitness of mosquito larvae. CONCLUSIONS Ovipositing females impact the composition of the microbial community associated with a breeding site, promoting certain bacterial taxa over those prevailing in the environment. Among these bacteria, we found known mosquito symbionts and showed that they can improve offspring fitness if present in the water where eggs are laid. We deem this oviposition-mediated bacterial community shaping as a form of niche construction initiated by the gravid female.
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Affiliation(s)
- Katherine D Mosquera
- Vector Behavior and Pathogen Interaction Group, René Rachou Institute-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil
| | - Luis Eduardo Martínez Villegas
- Department of Entomology, The Ohio State University, 2001 Fyffe Rd., Room 232 Howlett Hall, Columbus, OH, 43210, USA
- Mosquito Vectors: Endosymbionts and Pathogen-Vector Interactions Group, René Rachou Institute-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil
| | | | - Mariana Rocha David
- Laboratory of Hematozoa Transmitting Mosquitoes, Oswaldo Cruz Institute-FIOCRUZ, Rio de Janeiro, Brazil
| | - Rafael Maciel-de-Freitas
- Laboratory of Hematozoa Transmitting Mosquitoes, Oswaldo Cruz Institute-FIOCRUZ, Rio de Janeiro, Brazil
| | - Luciano A Moreira
- Mosquito Vectors: Endosymbionts and Pathogen-Vector Interactions Group, René Rachou Institute-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil
| | - Marcelo G Lorenzo
- Vector Behavior and Pathogen Interaction Group, René Rachou Institute-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil.
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Werner MS, Loschko T, King T, Reich S, Theska T, Franz-Wachtel M, Macek B, Sommer RJ. Histone 4 lysine 5/12 acetylation enables developmental plasticity of Pristionchus mouth form. Nat Commun 2023; 14:2095. [PMID: 37055396 PMCID: PMC10102330 DOI: 10.1038/s41467-023-37734-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 03/28/2023] [Indexed: 04/15/2023] Open
Abstract
Development can be altered to match phenotypes with the environment, and the genetic mechanisms that direct such alternative phenotypes are beginning to be elucidated. Yet, the rules that govern environmental sensitivity vs. invariant development, and potential epigenetic memory, remain unknown. Here, we show that plasticity of nematode mouth forms is determined by histone 4 lysine 5 and 12 acetylation (H4K5/12ac). Acetylation in early larval stages provides a permissive chromatin state, which is susceptible to induction during the critical window of environmental sensitivity. As development proceeds deacetylation shuts off switch gene expression to end the critical period. Inhibiting deacetylase enzymes leads to fixation of prior developmental trajectories, demonstrating that histone modifications in juveniles can carry environmental information to adults. Finally, we provide evidence that this regulation was derived from an ancient mechanism of licensing developmental speed. Altogether, our results show that H4K5/12ac enables epigenetic regulation of developmental plasticity that can be stored and erased by acetylation and deacetylation, respectively.
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Affiliation(s)
- Michael S Werner
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology Tübingen, Tübingen, 72076, Germany
- School of Biological Sciences, The University of Utah, Salt Lake City, UT, USA
| | - Tobias Loschko
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology Tübingen, Tübingen, 72076, Germany
| | - Thomas King
- School of Biological Sciences, The University of Utah, Salt Lake City, UT, USA
| | - Shelley Reich
- School of Biological Sciences, The University of Utah, Salt Lake City, UT, USA
| | - Tobias Theska
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology Tübingen, Tübingen, 72076, Germany
| | | | - Boris Macek
- Proteome Center Tübingen, University of Tübingen, Tübingen, 72076, Germany
| | - Ralf J Sommer
- Department for Integrative Evolutionary Biology, Max Planck Institute for Biology Tübingen, Tübingen, 72076, Germany.
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Uchida Y, Takeda H, Furusawa C, Irie N. Stability in gene expression and body-plan development leads to evolutionary conservation. EvoDevo 2023; 14:4. [PMID: 36918942 PMCID: PMC10015717 DOI: 10.1186/s13227-023-00208-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Accepted: 03/01/2023] [Indexed: 03/16/2023] Open
Abstract
BACKGROUND Phenotypic evolution is mainly explained by selection for phenotypic variation arising from factors including mutation and environmental noise. Recent theoretical and experimental studies have suggested that phenotypes with greater developmental stability tend to have a constant phenotype and gene expression level within a particular genetic and environmental condition, and this positively correlates with stronger evolutionary conservation, even after the accumulation of genetic changes. This could reflect a novel mechanism that contributes to evolutionary conservation; however, it remains unclear whether developmental stability is the cause, or whether at least it contributes to their evolutionary conservation. Here, using Japanese medaka lines, we tested experimentally whether developmental stages and gene expression levels with greater stability led to their evolutionary conservation. RESULTS We first measured the stability of each gene expression level and developmental stage (defined here as the whole embryonic transcriptome) in the inbred F0 medaka population. We then measured their evolutionary conservation in the F3 generation by crossing the F0 line with the distantly related Japanese medaka line (Teradomori), followed by two rounds of intra-generational crossings. The results indicated that the genes and developmental stages that had smaller variations in the F0 generation showed lower diversity in the hybrid F3 generation, which implies a causal relationship between stability and evolutionary conservation. CONCLUSIONS These findings suggest that the stability in phenotypes, including the developmental stages and gene expression levels, leads to their evolutionary conservation; this most likely occurs due to their low potential to generate phenotypic variation. In addition, since the highly stable developmental stages match with the body-plan-establishment stage, it also implies that the developmental stability potentially contributed to the strict conservation of animal body plan.
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Affiliation(s)
- Yui Uchida
- Center for Biosystems Dynamics Research, RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.
| | - Hiroyuki Takeda
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan
| | - Chikara Furusawa
- Center for Biosystems Dynamics Research, RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.,Universal Biology Institute, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan
| | - Naoki Irie
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan. .,Universal Biology Institute, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan.
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Shavit A, Sharon G. Can models of evolutionary transition clarify the debates over the Neolithic Revolution? Philos Trans R Soc Lond B Biol Sci 2023; 378:20210413. [PMID: 36688395 PMCID: PMC9869441 DOI: 10.1098/rstb.2021.0413] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
The 'Neolithic Revolution,' sometimes referred to as the emergence of agriculture at its earliest in the southern Levant, is the most significant shift in human history, shaping the world we live in today. Yet, after 100 years of study, its major cause, tempo (gradual or revolutionary), and impact of human intentionality remain disputed. Here, we examine the research potential of an evolutionary transition in individuality (ETI) to clarify this dramatic shift. Applying an ETI research perspective reveals how different causes and conditions lead to the same result, enabling a holistic view rather than a reduction of 'Neolithic' to 'agriculture,' or to one major climatic condition, inheritance system or standard evolutionary model, thus allowing us to clarify and bypass some of these heated, unresolved disputes. Additionally, unlike current archaeological emphasis on 'where,' 'when,' 'why' and 'how' questions, the ETI perspective offers a productive path for resolving a fundamental preliminary anomaly: why and how could the Neolithic lifeway evolve at all, given the selfish interest of individuals in a hunter-gatherer group? We do not intend to solve the shift to Neolithic lifeways, only to offer a fresh lens for examining it, emphasizing the relevance of tracking within and between group differences. This article is part of the theme issue 'Human socio-cultural evolution in light of evolutionary transitions'.
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Affiliation(s)
- Ayelet Shavit
- Department of Interdisciplinary Studies, Tel Hai College, 1220800, Israel,Department of Humanities and Arts, Technion, 3200003 Israel
| | - Gonen Sharon
- Department of Humanities and Arts, Technion, 3200003 Israel
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Evolutionary honing in and mutational replacement: how long-term directed mutational responses to specific environmental pressures are possible. Theory Biosci 2023; 142:87-105. [PMID: 36899155 DOI: 10.1007/s12064-023-00387-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 01/13/2023] [Indexed: 03/12/2023]
Abstract
Recent results have shown that the human malaria-resistant hemoglobin S mutation originates de novo more frequently in the gene and in the population where it is of adaptive significance, namely, in the hemoglobin subunit beta gene compared to the nonresistant but otherwise identical 20A[Formula: see text]T mutation in the hemoglobin subunit delta gene, and in sub-Saharan Africans, who have been subject to intense malarial pressure for many generations, compared to northern Europeans, who have not. This finding raises a fundamental challenge to the traditional notion of accidental mutation. Here, we address this finding with the replacement hypothesis, according to which preexisting genetic interactions can lead directly and mechanistically to mutations that simplify and replace them. Thus, an evolutionary process under selection can gradually hone in on interactions of importance for the currently evolving adaptations, from which large-effect mutations follow that are relevant to these adaptations. We exemplify this hypothesis using multiple types of mutation, including gene fusion mutations, gene duplication mutations, A[Formula: see text]G mutations in RNA-edited sites and transcription-associated mutations, and place it in the broader context of a system-level view of mutation origination called interaction-based evolution. Potential consequences include that similarity of mutation pressures may contribute to parallel evolution in genetically related species, that the evolution of genome organization may be driven by mutational mechanisms, that transposable element movements may also be explained by replacement, and that long-term directed mutational responses to specific environmental pressures are possible. Such mutational phenomena need to be further tested by future studies in natural and artificial settings.
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Neuroplasticity enables bio-cultural feedback in Paleolithic stone-tool making. Sci Rep 2023; 13:2877. [PMID: 36807588 PMCID: PMC9938911 DOI: 10.1038/s41598-023-29994-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 02/14/2023] [Indexed: 02/20/2023] Open
Abstract
Stone-tool making is an ancient human skill thought to have played a key role in the bio-cultural co-evolutionary feedback that produced modern brains, culture, and cognition. To test the proposed evolutionary mechanisms underpinning this hypothesis we studied stone-tool making skill learning in modern participants and examined interactions between individual neurostructural differences, plastic accommodation, and culturally transmitted behavior. We found that prior experience with other culturally transmitted craft skills increased both initial stone tool-making performance and subsequent neuroplastic training effects in a frontoparietal white matter pathway associated with action control. These effects were mediated by the effect of experience on pre-training variation in a frontotemporal pathway supporting action semantic representation. Our results show that the acquisition of one technical skill can produce structural brain changes conducive to the discovery and acquisition of additional skills, providing empirical evidence for bio-cultural feedback loops long hypothesized to link learning and adaptive change.
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Dodig-Crnkovic G, Miłkowski M. Discussion on the Relationship between Computation, Information, Cognition, and Their Embodiment. ENTROPY (BASEL, SWITZERLAND) 2023; 25:310. [PMID: 36832676 PMCID: PMC9955108 DOI: 10.3390/e25020310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/27/2023] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
Abstract
Three special issues of Entropy journal have been dedicated to the topics of "Information-Processing and Embodied, Embedded, Enactive Cognition". They addressed morphological computing, cognitive agency, and the evolution of cognition. The contributions show the diversity of views present in the research community on the topic of computation and its relation to cognition. This paper is an attempt to elucidate current debates on computation that are central to cognitive science. It is written in the form of a dialog between two authors representing two opposed positions regarding the issue of what computation is and could be, and how it can be related to cognition. Given the different backgrounds of the two researchers, which span physics, philosophy of computing and information, cognitive science, and philosophy, we found the discussions in the form of Socratic dialogue appropriate for this multidisciplinary/cross-disciplinary conceptual analysis. We proceed as follows. First, the proponent (GDC) introduces the info-computational framework as a naturalistic model of embodied, embedded, and enacted cognition. Next, objections are raised by the critic (MM) from the point of view of the new mechanistic approach to explanation. Subsequently, the proponent and the critic provide their replies. The conclusion is that there is a fundamental role for computation, understood as information processing, in the understanding of embodied cognition.
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Affiliation(s)
- Gordana Dodig-Crnkovic
- Department of Computer Science and Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden
- Division of Computer Science and Software Engineering, School of Innovation, Design and Engineering, Mälardalen University, 722 20 Västerås, Sweden
| | - Marcin Miłkowski
- Institute of Philosophy and Sociology, Polish Academy of Sciences, ul. Nowy Świat 72, 00-330 Warszawa, Poland
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50
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Stevens DR, Graham MA, Bardjis CI, Foster SA, Baker JA, Mathis KA. Evolution of chemical-cue-mediated antipredator behavior in threespine stickleback populations experiencing northern pike predation. Biol Invasions 2023. [DOI: 10.1007/s10530-023-02996-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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