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Samim AR, Singh VK, Singh MP, Vaseem H. An ecofriendly approach to bioremediate nickel oxide nanoparticles using a macrofungus, Pleurotus fossulatus. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:45776-45792. [PMID: 38977547 DOI: 10.1007/s11356-024-34210-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 06/29/2024] [Indexed: 07/10/2024]
Abstract
Nowadays, nickel oxide nanoparticles are in great demands owing to their use in many sectors. These nanoparticles may release into aquatic environment from different industries and cause negative effect on aquatic flora and fauna. Therefore, an effective and efficient method is required to remove these nanoparticles from contaminated water. Hence, the aim of this study was to bioremediate nickel oxide nanoparticles using a macrofungus, Pleurotus fossulatus, and to analyze its impact on fungal physiology. For this purpose, fungal spawns were inoculated in malt dextrose agar media containing different concentrations of nickel oxide nanoparticles (24 mg/l, 48 mg/l, and 100 mg/l) as well as control group (having no nickel oxide nanoparticles) and allowed to grow for a period of 20 days. Fungal mycelia as well as media were collected at different time intervals (5th day, 10th day, 15th day, and 20th day) for evaluation of Ni concentration and different biochemical parameters. Ni removal efficiency of P. fossulatus from media was found to be highest in 48 mg/l (66.98%) followed by 24 mg/l (60.83%) and 100 mg/l (18.03%), respectively. Increased level of metallothionein, lipid peroxidation, activity of different antioxidant enzymes (superoxide dismutase, catalase, glutathione s transferase, glutathione reductase), activity of ligninolytic enzymes (laccase, lignin peroxidase, manganese peroxidase), and shift in FTIR spectra were also reported in mycelia cultured in malt dextrose agar media containing nickel oxide nanoparticles. This study suggests that P. fossulatus has great efficiency to remediate nanoparticles from contaminated water and it can be utilized as potential agent in wastewater treatment plants by different industries.
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Affiliation(s)
- Abdur Rouf Samim
- Department of Zoology, Faculty of Life Sciences, Aligarh Muslim University, Aligarh, 202002, India
| | - Vinay Kumar Singh
- Department of Zoology, CMP Degree College, University of Allahabad, Prayagraj, 211002, India
| | - Mohan Prasad Singh
- Centre of Biotechnology, University of Allahabad, Prayagraj, 211002, India
| | - Huma Vaseem
- Department of Zoology, Faculty of Life Sciences, Aligarh Muslim University, Aligarh, 202002, India.
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Mathur J, Panwar R. Synergistic effect of pyrene and heavy metals (Zn, Pb, and Cd) on phytoremediation potential of Medicago sativa L. (alfalfa) in multi-contaminated soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:21012-21027. [PMID: 38383928 DOI: 10.1007/s11356-024-32499-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 02/12/2024] [Indexed: 02/23/2024]
Abstract
The environment in India is contaminated with polycyclic aromatic hydrocarbons (PAHs) due to the occurrence of large anthropogenic activities, i.e., fuel combustion, mineral roasting, and biomass burning. Hence, 13 toxic PAHs were detected: phenanthrene, anthracene, fluoranthene, pyrene, and benz(a) anthracene, ben-zo; (b) fluoranthene, benzo(k) fluoranthene, benzo(a) pyrene, benzo(ghi)perylene, dibenz (ah) anthracene, indeno1,2,3-(cd) pyrene, coronene and coronene in the environment (i.e., ambient particulate matter, road dust, sludge, and sewage) of the most industrialized area. Pollutants such as heavy metals and polycyclic aromatic hydrocarbons co-contaminate the soil and pose a significant hazard to the ecosystem because these pollutants are harmful to both humans and the environment. Phytoremediation is an economical plant-based natural approach for soil clean-up that has no negative impact on ecosystems. The aim of this study was to investigate the effects of pyrene (500 mg kg-1), Zn (150 mg kg-1), Pb (150 mg kg-1), and Cd (150 mg kg-1) alone and in combination on the phytoextraction efficiency of Medicago sativa growing in contaminated soil. Plant biomass, biochemical activities, translocation factors, accumulation of heavy metals, and pyrene removal were determined. After 60 days of planting, compared with those of the control plants, the growth parameters, biomass, and chlorophyll content of the M. sativa plants were significantly lower, and the reactive oxygen species activity, such as proline and polyphenol content and metallothionein protein content, was markedly greater in the pyrene and heavy metal-polluted soils. Furthermore, the combined toxicity of pyrene and all three metals on M. sativa growth and biochemical parameters was significantly greater than that of pyrene, Zn, Pb, or Cd alone, indicating the synergistic effect of pyrene and heavy metals on cytotoxicity. Pyrene stress increased Cd accumulation in M. sativa. After pyrene exposure alone or in combination with Zn-pyrene, a greater pyrene removal rate (85.5-81.44%) was observed than that in Pb-pyrene, Cd-pyrene, and Zn-Pb-Cd-pyrene polluted soils (62.78-71.27%), indicating that zinc can enhance the removal of pyrene from contaminated soil. The resulting hypotheses demonstrated that Medicago sativa can be used as a promising phytoremediation agent for co-contaminated soil.
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Affiliation(s)
- Jyoti Mathur
- Department of Bioscience and Biotechnology, Banasthali Vidyapith, Rajasthan, India.
| | - Ritu Panwar
- Department of Bioscience and Biotechnology, Banasthali Vidyapith, Rajasthan, India
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Zhang Y, Chen X, Xie L. Pleurotus pulmonarius Strain: Arsenic(III)/Cadmium(II) Accumulation, Tolerance, and Simulation Application in Environmental Remediation. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:5056. [PMID: 36981967 PMCID: PMC10049176 DOI: 10.3390/ijerph20065056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/08/2023] [Accepted: 03/10/2023] [Indexed: 06/18/2023]
Abstract
The arsenic (As, III) and cadmium (Cd, II) accumulation and tolerance traits of a new strain Pleurotus pulmonarius MT were evaluated, and the utilization of the strain for repairing contaminated liquid and soil was explored. The hypha cultivated in potato dextrose agar (PDA) exhibited medium or high Cd accumulation (0 to 320 mg/L), medium Cd tolerance (maximum tolerated concentration, MTC ≥ 640 mg/L), medium As accumulation (0 to 80 mg/L), and high As tolerance (MTC > 1280 mg/L). The hypha has application potential in processes related to the removal of Cd and As in aqueous pollutants at concentrations of 80 mg/L Cd and 20 mg/L As. The trends obtained for the fruiting bodies of P. pulmonarius MT seemed to deviate from those of the hypha of this strain. The results show that the fruiting bodies featured medium As accumulation (0 to 40 mg/kg), medium As tolerance (MTC > 160 mg/kg), medium Cd accumulation (0 to 10 mg/kg), and high Cd tolerance (MTC > 1280 mg/kg). The fruiting bodies of P. pulmonarius MT were utilized in processes related to the recovery of Cd and As in substrates, that is, 12% contaminated soil mixed with 50 mg/kg Cd and 200 mg/kg As; thus, the hypha and fruiting bodies of P. pulmonarius MT can be used for the decontamination of water and soil containing As(III) and Cd(II).
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Affiliation(s)
- Yuhui Zhang
- Horticulture College, Hunan Agricultural University, Changsha 410128, China
| | - Xiaohong Chen
- Horticulture College, Hunan Agricultural University, Changsha 410128, China
| | - Ling Xie
- Horticulture College, Hunan Agricultural University, Changsha 410128, China
- Hunan Engineering Research Center of Edible Fungi, Changsha 410128, China
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha 410128, China
- Engineering Research Center for Horticultural Crop Germplasm Creation and New Variety Breeding, Ministry of Education, Changsha 410128, China
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Naz F, Hamayun M, Rauf M, Arif M, Afzal Khan S, Ud-Din J, Gul H, Hussain A, Iqbal A, Kim HY, Lee IJ. Molecular mechanism of Cu metal and drought stress resistance triggered by Porostereum spadiceum AGH786 in Solanum lycopersicum L. FRONTIERS IN PLANT SCIENCE 2022; 13:1029836. [PMID: 36438115 PMCID: PMC9685319 DOI: 10.3389/fpls.2022.1029836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 10/06/2022] [Indexed: 06/16/2023]
Abstract
Rapid industrialization and global warming have threatened the plants with multiple abiotic stresses, such as heavy metals and drought stress. For crop cultivation, the conventional approach of cleaning the soils by excavation is very costly and not feasible for large scale. Establishing toxin-free and drought-resistant crops is a major challenge in the environment under natural and anthropogenic pressure. In the past decades, copper contamination of agricultural land has become an emerging concern. For dry land reclamation, several new strategies, including bioremediation (phytoremediation and microbial remediation), have been used. Owing to the potential of Cu hyperaccumulators, the current project aims to enhance the drought tolerance and the phytoremediation potential of Solanum lycopersicum L. with the inoculation of copper and 12% polyethylene glycol (PEG)-induced drought stress-tolerant endophytic fungus Porostereum spadiceum AGH786 under the combined stress of copper heavy metal and PEG-induced drought stress. When S. lycopersicum L. was watered with individual stress of copper (Cu) concentration (400 ppm) in the form of copper sulfate (CuSO4.5H2O), 12% PEG-induced drought stress and the combined stress of both negatively affected the growth attributes, hormonal, metabolic, and antioxidant potential, compared with control. However, the multistress-resistant AGH786 endophytic fungus ameliorated the multistress tolerance response in S. lycopersicum L. by positively affecting the growth attributes, hormonal, metabolic, and antioxidant potential, and by restricting the root-to-shoot translocation of Cu and inducing its sequestration in the root tissues of affected plants. AGH786-associated plants exhibited a reduction in the severity of copper (Cu) and drought stress, with higher levels of SlCOPT (Cu transporters) and SlMT (metallothionine) gene expressions in root and shoot tissues, indicating that AGH786 contributed to resistance to copper metal toxicity and drought stress in the host S. lycopersicum L.
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Affiliation(s)
- Falak Naz
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Mamoona Rauf
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Muhammad Arif
- Department of Biotechnology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Sumera Afzal Khan
- Centre of Biotechnology and Microbiology, University of Peshawar, Peshawar, Pakistan
| | - Jalal Ud-Din
- Department of Biotechnology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Humaira Gul
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Anwar Hussain
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Amjad Iqbal
- Department of Food Technology, Abdul Wali Khan University, Mardan, Pakistan
| | - Ho-Youn Kim
- Smart Farm Research Center, Korea Institute of Science and Technology, Gangneung, South Korea
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
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Jan S, Anna C, Antonín K, Jiří Š, Jan B, Tereza L, Pavel K. Intracellular sequestration of cadmium and zinc in ectomycorrhizal fungus Amanita muscaria (Agaricales, Amanitaceae) and characterization of its metallothionein gene. Fungal Genet Biol 2022; 162:103717. [PMID: 35764233 DOI: 10.1016/j.fgb.2022.103717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 06/10/2022] [Accepted: 06/22/2022] [Indexed: 11/16/2022]
Abstract
Amanita muscaria is an ectomycorrhizal mushroom that commonly grows at metal-polluted sites. Sporocarps from the lead smelter-polluted area near Příbram (Central Bohemia, Czech Republic) showed elevated concentrations of Cd and Zn. Size exclusion chromatography of the cell extracts of the sporocarps from both polluted and unpolluted sites indicated that substantial part of intracellular Cd and Zn was sequestered in 6-kDa complexes, presumably with metallothionein(s) (MT). When the cultured mycelial isolates were compared, those from Příbram were more Cd-tolerant and accumulated slightly less Cd and Zn than those from the unpolluted site. The analysis of the available A.muscaria sequence data returned a 67-amino acid (AA) MT encoded by the AmMT1 gene. Weak Cd and Zn responsiveness of AmMT1 in the mycelia suggested its metal homeostasis function in A.muscaria, rather than a major role in detoxification. The AmMT1 belongs to a ubiquitous peptide group in the Agaricomycetes consisting of 60-70-AA MTs containing seven cysteinyl domains and a conserved histidyl, features observed also in a newly predicted, atypical 45-AA RaMT1 of the Zn-accumulator Russula bresadolae in which the C-terminal cysteinyl domains VI and VII are missing. Heterologous expression in metal-sensitive yeast mutants indicated that AmMT1 and RaMT1 encode functional peptides that can protect cells against Cd, Zn, and Cu toxicity. The metal protection phenotype observed in yeasts with mutant variants of AmMT1 and RaMT1 further indicated that the conserved histidyl seems to play a structural, not metal binding role, and the cysteinyls of the C-terminal domains VI and VII are important for Cu binding. The data provide an important insight into the metal handling of site-associated ectomycorrhizal species disturbed by excess metals and the properties of MTs common in Agaricomycetes.
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Affiliation(s)
- Sácký Jan
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Chaloupecká Anna
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Kaňa Antonín
- Department of Analytical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic
| | - Šantrůček Jiří
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Borovička Jan
- Institute of Geology of the Czech Academy of Sciences, Rozvojová 269, 16500 Prague 6, Czech Republic; Nuclear Physics Institute of the Czech Academy of Sciences, Hlavní 130, 25068 Husinec-Řež, Czech Republic
| | - Leonhardt Tereza
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Kotrba Pavel
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic.
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Dey P, Malik A, Singh DK, Haange SB, von Bergen M, Jehmlich N. Insight Into the Molecular Mechanisms Underpinning the Mycoremediation of Multiple Metals by Proteomic Technique. Front Microbiol 2022; 13:872576. [PMID: 35756008 PMCID: PMC9221998 DOI: 10.3389/fmicb.2022.872576] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 04/07/2022] [Indexed: 11/13/2022] Open
Abstract
We investigated the fungus Aspergillus fumigatus PD-18 responses when subjected to the multimetal combination (Total Cr, Cd2+, Cu2+, Ni2+, Pb2+, and Zn2+) in synthetic composite media. To understand how multimetal stress impacts fungal cells at the molecular level, the cellular response of A. fumigatus PD-18 to 30 mg/L multimetal stress (5 mg/L of each heavy metal) was determined by proteomics. The comparative fungal proteomics displayed the remarkable inherent intracellular and extracellular mechanism of metal resistance and tolerance potential of A. fumigatus PD-18. This study reported 2,238 proteins of which 434 proteins were exclusively expressed in multimetal extracts. The most predominant functional class expressed was for cellular processing and signaling. The type of proteins and the number of proteins that were upregulated due to various stress tolerance mechanisms were post-translational modification, protein turnover, and chaperones (42); translation, ribosomal structure, and biogenesis (60); and intracellular trafficking, secretion, and vesicular transport (18). In addition, free radical scavenging antioxidant proteins, such as superoxide dismutase, were upregulated upto 3.45-fold and transporter systems, such as protein transport (SEC31), upto 3.31-fold to combat the oxidative stress caused by the multiple metals. Also, protein–protein interaction network analysis revealed that cytochrome c oxidase and 60S ribosomal protein played key roles to detoxify the multimetal. To the best of our knowledge, this study of A. fumigatus PD-18 provides valuable insights toward the growing research in comprehending the metal microbe interactions in the presence of multimetal. This will facilitate in development of novel molecular markers for contaminant bioremediation.
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Affiliation(s)
- Priyadarshini Dey
- Applied Microbiology Lab, Centre for Rural Development and Technology, Indian Institute of Technology Delhi, New Delhi, India
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- Department of Biotechnology, MS Ramaiah Institute of Technology, Bengaluru, India
| | - Anushree Malik
- Applied Microbiology Lab, Centre for Rural Development and Technology, Indian Institute of Technology Delhi, New Delhi, India
| | - Dileep Kumar Singh
- Department of Zoology, Faculty of Science, University of Delhi, New Delhi, India
| | - Sven-Bastiaan Haange
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
| | - Martin von Bergen
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- Institute of Biochemistry, Faculty of Biosciences, Pharmacy and Psychology, University of Leipzig, Leipzig, Germany
- German Centre for Integrative Biodiversity, Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Nico Jehmlich
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- *Correspondence: Nico Jehmlich,
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Gajewska J, Floryszak-Wieczorek J, Sobieszczuk-Nowicka E, Mattoo A, Arasimowicz-Jelonek M. Fungal and oomycete pathogens and heavy metals: an inglorious couple in the environment. IMA Fungus 2022; 13:6. [PMID: 35468869 PMCID: PMC9036806 DOI: 10.1186/s43008-022-00092-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Accepted: 04/07/2022] [Indexed: 01/30/2023] Open
Abstract
Heavy metal (HM) contamination of the environment is a major problem worldwide. The rate of global deposition of HMs in soil has dramatically increased over the past two centuries and there of facilitated their rapid accumulation also in living systems. Although the effects of HMs on plants, animals and humans have been extensively studied, yet little is known about their effects on the (patho)biology of the microorganisms belonging to a unique group of filamentous eukaryotic pathogens, i.e., fungi and oomycetes. Much of the literature concerning mainly model species has revealed that HM stress affects their hyphal growth, morphology, and sporulation. Toxicity at cellular level leads to disturbance of redox homeostasis manifested by the formation of nitro-oxidative intermediates and to the induction of antioxidant machinery. Despite such adverse effects, published data is indicative of the fact that fungal and oomycete pathogens have a relatively high tolerance to HMs in comparison to other groups of microbes such as bacteria. Likely, these pathogens may harbor a network of detoxification mechanisms that ensure their survival in a highly HM-polluted (micro)habitat. Such a network may include extracellular HMs immobilization, biosorption to cell wall, and/or their intracellular sequestration to proteins or other ligands. HMs may also induce a hormesis-like phenomenon allowing the pathogens to maintain or even increase fitness against chemical challenges. Different scenarios linking HMs stress and modification of the microorganisms pathogenicity are disscused in this review.
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Chot E, Reddy MS. Role of Ectomycorrhizal Symbiosis Behind the Host Plants Ameliorated Tolerance Against Heavy Metal Stress. Front Microbiol 2022; 13:855473. [PMID: 35418968 PMCID: PMC8996229 DOI: 10.3389/fmicb.2022.855473] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Accepted: 02/15/2022] [Indexed: 12/05/2022] Open
Abstract
Soil heavy metal (HM) pollution, which arises from natural and anthropogenic sources, is a prime threat to the environment due to its accumulative property and non-biodegradability. Ectomycorrhizal (ECM) symbiosis is highly efficient in conferring enhanced metal tolerance to their host plants, enabling their regeneration on metal-contaminated lands for bioremediation programs. Numerous reports are available regarding ECM fungal potential to colonize metal-contaminated lands and various defense mechanisms of ECM fungi and plants against HM stress separately. To utilize ECM–plant symbiosis successfully for bioremediation of metal-contaminated lands, understanding the fundamental regulatory mechanisms through which ECM symbiosis develops an enhanced metal tolerance in their host plants has prime importance. As this field is highly understudied, the present review emphasizes how plant’s various defense systems and their nutrient dynamics with soil are affected by ECM fungal symbiosis under metal stress, ultimately leading to their host plants ameliorated tolerance and growth. Overall, we conclude that ECM symbiosis improves the plant growth and tolerance against metal stress by (i) preventing their roots direct exposure to toxic soil HMs, (ii) improving plant antioxidant activity and intracellular metal sequestration potential, and (iii) altering plant nutrient uptake from the soil in such a way to enhance their tolerance against metal stress. In some cases, ECM symbiosis promotes HM accumulation in metal stressed plants simultaneous to improved growth under the HM dilution effect.
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Affiliation(s)
- Eetika Chot
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, India
| | - Mondem Sudhakara Reddy
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, India
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Liu B, Dong P, Zhang X, Feng Z, Wen Z, Shi L, Xia Y, Chen C, Shen Z, Lian C, Chen Y. Identification and characterization of eight metallothionein genes involved in heavy metal tolerance from the ectomycorrhizal fungus Laccaria bicolor. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:14430-14442. [PMID: 34617232 DOI: 10.1007/s11356-021-16776-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Accepted: 09/23/2021] [Indexed: 06/13/2023]
Abstract
Metallothioneins (MTs) are small, cysteine-rich, heavy metal-binding proteins involved in metal homeostasis and detoxification. The increasing numbers of available genomic sequences of ectomycorrhizal (ECM) fungi enable deeper insights into the characteristics of MT genes in these fungi that form the most important symbiosis with the host trees in forest ecosystems. The aim of this study was to establish a comprehensive, genome-wide inventory of MT genes from the ECM fungus Laccaria bicolor. Eight MT genes in L. bicolor were cloned, and the expression patterns of their transcripts at various developmental stages based on expressed sequence tag (EST) counts were analyzed. The expression levels of four MTs were significantly increased during symbiosis stages. Quantitative real-time PCR (qRT-PCR) analysis revealed that transcripts of LbMT1 were dominant in free-living mycelia and strongly induced by excessive copper (Cu), cadmium (Cd), and hydrogen peroxide (H2O2). To determine whether these eight MTs functioned as metal chelators, we expressed them in the Cu- and Cd-sensitive yeast mutants, cup1∆ and yap1∆, respectively. All LbMT proteins provided similar levels of Cu(II) or Cd(II) tolerance, but did not affect by H2O2. Our findings provide novel data on the evolution and diversification of fungal MT gene duplicates, a valuable resource for understanding the vast array of biological processes in which these proteins are involved.
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Affiliation(s)
- Binhao Liu
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Pengcheng Dong
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xinzhe Zhang
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhihang Feng
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhugui Wen
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Liang Shi
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yan Xia
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chen Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhenguo Shen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chunlan Lian
- Asian Natural Environmental Science Center, The University of Tokyo, 1-1-8 Midoricho, Nishitokyo, Tokyo, 188-0002, Japan
| | - Yahua Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
- Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, Nanjing Agricultural University, Nanjing, 210095, China.
- Asian Natural Environmental Science Center, The University of Tokyo, 1-1-8 Midoricho, Nishitokyo, Tokyo, 188-0002, Japan.
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Okasha H, Abdel-Motleb A, Abdel-Wareth MTA. Metallothionein expression in Aspergillus exposed to environmentally relevant concentrations of heavy metals at different pH levels. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:49936-49948. [PMID: 33942268 DOI: 10.1007/s11356-021-14237-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Heavy metal pollution represents a health threat. Many fungal species are capable of tolerating various heavy metals, especially if they are isolated from a contaminated watercourse. One of the mechanisms by which fungi can sequester certain heavy metals is synthesizing stress proteins. The aim of this study is to investigate the production of metallothioneins in Aspergillus oryzae and Aspergillus clavatus exposed to environmentally relevant concentrations of Cd, Cu, Fe, and Zn at neutral, alkaline, and acidic pH conditions within 10 days. We determined the concentrations of these heavy metals in certain watercourses representing Behira and Giza governorates; also, we identified the most prevalent fungal species. We carried out a statistical correlation between different heavy metals and the isolated fungi. Then, in the laboratory, we exposed two of the most prevalent fungal species to the environmentally detected concentrations of the heavy metals and their doubles. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis demonstrated that in A. oryzae, the metallothionein bands appeared in neutral medium containing Cd and Cu and in alkaline medium containing Cd and Zn, while in A. clavatus, no metallothionein bands appeared at all. In conclusion, metallothionein is a good indicator of pollution with Cd, Cu, and Zn in Aspergillus oryzae, and pH plays a central role in metallothionein production.
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Affiliation(s)
- Hend Okasha
- Department of Biochemistry and Molecular Biology, Theodor Bilharz Research Institute, Nile St., Warrak El-Hadar, Giza, Egypt
| | - Asmaa Abdel-Motleb
- Department of Environmental Research and Medical Malacology, Theodor Bilharz Research Institute, Nile St., Warrak El-Hadar, P.O. Box 30 Imbaba, Giza, 12411, Egypt
| | - Marwa Tamim A Abdel-Wareth
- Department of Environmental Research and Medical Malacology, Theodor Bilharz Research Institute, Nile St., Warrak El-Hadar, P.O. Box 30 Imbaba, Giza, 12411, Egypt.
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Tibbett M, Green I, Rate A, De Oliveira VH, Whitaker J. The transfer of trace metals in the soil-plant-arthropod system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 779:146260. [PMID: 33744587 DOI: 10.1016/j.scitotenv.2021.146260] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 02/26/2021] [Accepted: 02/28/2021] [Indexed: 06/12/2023]
Abstract
Essential and non-essential trace metals are capable of causing toxicity to organisms above a threshold concentration. Extensive research has assessed the behaviour of trace metals in biological and ecological systems, but has typically focused on single organisms within a trophic level and not on multi-trophic transfer through terrestrial food chains. This reinforces the notion of metal toxicity as a closed system, failing to consider one trophic level as a pollution source to another; therefore, obscuring the full extent of ecosystem effects. Given the relatively few studies on trophic transfer of metals, this review has taken a compartment-based approach, where transfer of metals through trophic pathways is considered as a series of linked compartments (soil-plant-arthropod herbivore-arthropod predator). In particular, we consider the mechanisms by which trace metals are taken up by organisms, the forms and transformations that can occur within the organism and the consequences for trace metal availability to the next trophic level. The review focuses on four of the most prevalent metal cations in soil which are labile in terrestrial food chains: Cd, Cu, Zn and Ni. Current knowledge of the processes and mechanisms by which these metals are transformed and moved within and between trophic levels in the soil-plant-arthropod system are evaluated. We demonstrate that the key factors controlling the transfer of trace metals through the soil-plant-arthropod system are the form and location in which the metal occurs in the lower trophic level and the physiological mechanisms of each organism in regulating uptake, transformation, detoxification and transfer. The magnitude of transfer varies considerably depending on the trace metal concerned, as does its toxicity, and we conclude that biomagnification is not a general property of plant-arthropod and arthropod-arthropod systems. To deliver a more holistic assessment of ecosystem toxicity, integrated studies across ecosystem compartments are needed to identify critical pathways that can result in secondary toxicity across terrestrial food-chains.
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Affiliation(s)
- Mark Tibbett
- Department of Sustainable Land Management & Soil Research Centre, School of Agriculture Policy and Development, University of Reading, Whiteknights, RG6 6AR, UK.
| | - Iain Green
- Department of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Poole, Dorset BH12 5BB, UK
| | - Andrew Rate
- School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia
| | - Vinícius H De Oliveira
- Department of Plant Biology, Institute of Biology, University of Campinas, Campinas, Sao Paulo 13083-970, Brazil
| | - Jeanette Whitaker
- UK Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4AP, UK
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12
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Clary Sage Cultivation and Mycorrhizal Inoculation Influence the Rhizosphere Fungal Community of an Aged Trace-Element Polluted Soil. Microorganisms 2021; 9:microorganisms9061333. [PMID: 34205382 PMCID: PMC8234821 DOI: 10.3390/microorganisms9061333] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 06/16/2021] [Accepted: 06/17/2021] [Indexed: 11/17/2022] Open
Abstract
Soil fungal communities play a central role in natural systems and agroecosystems. As such, they have attracted significant research interest. However, the fungal microbiota of aromatic plants, such as clary sage (Salvia sclarea L.), remain unexplored. This is especially the case in trace element (TE)-polluted conditions and within the framework of phytomanagement approaches. The presence of high concentrations of TEs in soils can negatively affect not only microbial diversity and community composition but also plant establishment and growth. Hence, the objective of this study is to investigate the soil fungal and arbuscular mycorrhizal fungi (AMF) community composition and their changes over time in TE-polluted soils in the vicinity of a former lead smelter and under the cultivation of clary sage. We used Illumina MiSeq amplicon sequencing to evaluate the effects of in situ clary sage cultivation over two successive years, combined or not with exogenous AMF inoculation, on the rhizospheric soil and root fungal communities. We obtained 1239 and 569 fungal amplicon sequence variants (ASV), respectively, in the rhizospheric soil and roots of S. sclarea under TE-polluted conditions. Remarkably, 69 AMF species were detected at our experimental site, belonging to 12 AMF genera. Furthermore, the inoculation treatment significantly shaped the fungal communities in soil and increased the number of AMF ASVs in clary sage roots. In addition, clary sage cultivation over successive years could be one of the explanatory parameters for the inter-annual variation in both fungal and AMF communities in the soil and root biotopes. Our data provide new insights on fungal and AMF communities in the rhizospheric soil and roots of an aromatic plant, clary sage, grown in TE-polluted agricultural soil.
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Sácký J, Černý J, Šantrůček J, Borovička J, Leonhardt T, Kotrba P. Cadmium hyperaccumulating mushroom Cystoderma carcharias has two metallothionein isoforms usable for cadmium and copper storage. Fungal Genet Biol 2021; 153:103574. [PMID: 34015433 DOI: 10.1016/j.fgb.2021.103574] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 05/05/2021] [Accepted: 05/07/2021] [Indexed: 10/21/2022]
Abstract
Cystoderma carcharias is one of the few macrofungal species that can hyperaccumulate Cd. As we have previously documented in C. carcharias collected from a smelter-polluted area, it stores 40% of Cd and nearly 90% of Cu in sporocarps in complex(es) of identical size. In this paper we examined whether metallothionein (MT) peptides that bind Cd and Cu through cysteinyl-thiolate bonds were associated with the metals in these complexes. Screening of a sporocarp cDNA expression library in yeasts allowed the identification of two transcripts, CcMT1 and CcMT2, encoding functional 34-amino acid (AA) MTs sharing 56% identity and appearing to be encoded by duplicate genes. CcMT1 conferred reasonable tolerance to Cu and a substantially higher tolerance to Cd than CcMT2, while CcMT2 clearly protected the yeasts better against Cu toxicity. While size-exclusion chromatography revealed that CcMT1 was contained in all Cd/Cu complexes isolated from wild grown sporocarps, CcMT2 was detected in a much narrower subset of the fractions. The striking difference between the CcMTs is that CcMT1 lacks the third metal-biding cysteinyl (C) within an otherwise highly conserved-in-agaricomycetes-MTs C-AA4-C-AA-C-AA3-C-AA-C-AA4-C-AA-C motif. The elimination of the corresponding cysteinyl in CcMT2 only reduced the Cu-tolerant phenotype in yeasts to the levels observed with CcMT1. Altogether, these results indicate that CcMT2 is rather adjusted to perform Cu-related tasks and point to CcMT1 as the ligand for the storage of both Cd and Cu in C.carcharias, which is the first macrofungal species in which the potential of MT in Cd handling can be seen.
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Affiliation(s)
- Jan Sácký
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic.
| | - Jiří Černý
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Jiří Šantrůček
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Jan Borovička
- Institute of Geology of the Czech Academy of Sciences, Rozvojová 269, 165 00 Prague 6, Czech Republic; Nuclear Physics Institute of the Czech Academy of Sciences, Hlavní 130, 250 68 Husinec-Řež, Czech Republic
| | - Tereza Leonhardt
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
| | - Pavel Kotrba
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28 Prague 6, Czech Republic
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14
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Butz ZJ, Hendricks A, Borgognoni K, Ackerson CJ. Identification of a TeO32- reductase/mycothione reductase from Rhodococcus erythropolis PR4. FEMS Microbiol Ecol 2021; 97:5974521. [PMID: 33377161 DOI: 10.1093/femsec/fiaa220] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 11/09/2020] [Indexed: 01/30/2023] Open
Abstract
A Rhodococcus erythropolis bacterium that tolerates normally lethal concentrations of Fe(II), Cu(II), AsO32-, SeO32-, TeO32-, Cd(II) and Zn(II) was identified from an environmental isolate. In characterizing the molecular basis for metal tolerance, a mycothione reductase (Mtr) with remarkable selectivity for TeO32- reduction over SeO32- was identified. In equimolar concentrations of TeO32- and SeO32-, the enzymatic product contains a 7-fold excess of Te. This selectivity is remarkable because the standard reduction potential of SeO32- is 0.20 V more favorable for reduction than TeO32. Selectivity of the enzyme for TeO32- decreases with increasing assay pH. Homology modeling of the enzyme identifies four aromatic residues near the active site, including two histidine residues, that are not present in a related SeO32- preferring reductase. On the basis of more favorable π-interactions for Te than for Se and the pH dependence of the selectivity, the Te-selectivity is attributed in part to these aromatic residues. The resulting Te0 enzymatic product resembles Te nanowires.
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Affiliation(s)
- Zachary J Butz
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
| | | | - Kanda Borgognoni
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
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15
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Thakur B, Yadav R, Mukherjee A, Melayah D, Marmeisse R, Fraissinet-Tachet L, Reddy MS. Protection from metal toxicity by Hsp40-like protein isolated from contaminated soil using functional metagenomic approach. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:17132-17145. [PMID: 33394429 DOI: 10.1007/s11356-020-12152-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
Pollution in the environment due to accumulation of potentially toxic metals results in deterioration of soil and water quality, thus impacting health of all living organisms including microbes. In the present investigation, a functional metagenomics approach was adopted to mine functional genes involved in metal tolerance from potentially toxic metal contaminated site. Eukaryotic cDNA library (1.0-4.0 kb) was screened for the genes providing tolerance to cadmium (Cd) toxicity through a functional complementation assay using Cd-sensitive Saccharomyces cerevisiae mutant ycf1Δ. Out of the 98 clones able to recover growth on Cd-supplemented selective medium, one clone designated as PLCc43 showed more tolerance to Cd along with some other clones. Sequence analysis revealed that cDNA PLCc43 encodes a 284 amino acid protein harbouring four characteristic zinc finger motif repeats (CXXCXGXG) and showing partial homology with heat shock protein (Hsp40) of Acanthamoeba castellanii. qPCR analysis revealed the induction of PLCc43 in the presence of Cd, which was further supported by accumulation of Cd in ycf1Δ/PLCc43 mutant. Cu-sensitive (cup1Δ), Zn-sensitive (zrc1Δ) and Co-sensitive (cot1Δ) yeast mutant strains were rescued from sensitivity when transformed with cDNA PLCc43 indicating its ability to confer tolerance to various potentially toxic metals. Oxidative stress tolerance potential of PLCc43 was also confirmed in the presence of H2O2. Present study results suggest that PLCc43 originating from a functional eukaryotic gene of soil community play an important role in detoxification of potentially toxic metals and may be used as biomarker in various contaminated sites.
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Affiliation(s)
- Bharti Thakur
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab, 147004, India
| | - Rajiv Yadav
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622, Villeurbanne, France
- Department of Botany, University of Allahabad, Prayagraj, Uttar Pradesh, India
| | - Arkadeep Mukherjee
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab, 147004, India
| | - Delphine Melayah
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622, Villeurbanne, France
| | - Roland Marmeisse
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622, Villeurbanne, France
| | - Laurence Fraissinet-Tachet
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622, Villeurbanne, France
| | - Mondem Sudhakara Reddy
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab, 147004, India.
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16
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Kumar V, Dwivedi SK. Mycoremediation of heavy metals: processes, mechanisms, and affecting factors. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:10375-10412. [PMID: 33410020 DOI: 10.1007/s11356-020-11491-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 10/30/2020] [Indexed: 05/27/2023]
Abstract
Industrial processes and mining of coal and metal ores are generating a number of threats by polluting natural water bodies. Contamination of heavy metals (HMs) in water and soil is the most serious problem caused by industrial and mining processes and other anthropogenic activities. The available literature suggests that existing conventional technologies are costly and generated hazardous waste that necessitates disposal. So, there is a need for cheap and green approaches for the treatment of such contaminated wastewater. Bioremediation is considered a sustainable way where fungi seem to be good bioremediation agents to treat HM-polluted wastewater. Fungi have high adsorption and accumulation capacity of HMs and can be potentially utilized. The most important biomechanisms which are involved in HM tolerance and removal by fungi are bioaccumulation, bioadsorption, biosynthesis, biomineralisation, bioreduction, bio-oxidation, extracellular precipitation, intracellular precipitation, surface sorption, etc. which vary from species to species. However, the time, pH, temperature, concentration of HMs, the dose of fungal biomass, and shaking rate are the most influencing factors that affect the bioremediation of HMs and vary with characteristics of the fungi and nature of the HMs. In this review, we have discussed the application of fungi, involved tolerance and removal strategies in fungi, and factors affecting the removal of HMs.
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Affiliation(s)
- Vinay Kumar
- Department of Environmental Science, Babasaheb Bhimrao Ambedkar University, Lucknow, 226025, India.
| | - Shiv Kumar Dwivedi
- Department of Environmental Science, Babasaheb Bhimrao Ambedkar University, Lucknow, 226025, India
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17
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Watson GJ, Pini JM, Richir J, Michie LA. Detecting the effects of chronic metal exposure on benthic systems: Importance of biomarker and endpoint selection. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2021; 230:105674. [PMID: 33307390 DOI: 10.1016/j.aquatox.2020.105674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 10/26/2020] [Accepted: 10/29/2020] [Indexed: 06/12/2023]
Abstract
Understanding metal toxicity to benthic systems is still an ecotoxicological priority and, although numerous biomarkers exist, a multi-biomarker and endpoint approach with sediment as the delivery matrix combined with life-history relevant exposure timescales is missing. Here we assess potential toxicity by measuring a suite of biomarkers and endpoints after exposing the ecologically important polychaete Alitta(Nereis)virens to sediment spiked with environmentally relevant concentrations of copper and zinc (and in combination) for 3, 6 and 9 months. We compared biomarker and endpoint sensitivity providing a guide to select the appropriate endpoints for the chosen time frame (exposure period) and concentration (relevant to Sediment Quality Guidelines) needed to identify effects for benthic polychaetes such as A. virens. Target bioavailable sediment and subsequent porewater concentrations reflect the global contamination range, whilst tissue concentrations, although elevated, were comparable with other polychaetes. Survival reduced as concentrations increased, but growth was not significantly different between treatments. Metabolic changes were restricted to significant reductions in protein after 9 months exposure across all copper concentrations, and reductions in lipid at high copper concentrations (3 months). Significant changes in feeding behaviour and increases in metallothionein-like protein concentration were limited to the medium and high copper and zinc concentrations, respectively, both after 6 months exposure. Despite data highlighting A. virens' metal tolerance, DNA damage and protein concentrations are the most sensitive biomarkers. Copper and zinc cause biomarker responses at concentrations routinely found in coastal sediments that are characterised as low contamination, suggesting a reappraisal of the current input sources (especially copper) is required.
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Affiliation(s)
- Gordon J Watson
- Institute of Marine Sciences, School of Biological Sciences, University of Portsmouth, Ferry Road, Portsmouth, UK
| | - Jennifer M Pini
- Institute of Marine Sciences, School of Biological Sciences, University of Portsmouth, Ferry Road, Portsmouth, UK
| | - Jonathan Richir
- Institute of Marine Sciences, School of Biological Sciences, University of Portsmouth, Ferry Road, Portsmouth, UK; Department of Biology, Ecology and Evolution / Biological Oceanography Faculty of Sciences / FOCUS University of Liege, Quartier Agora, allée du six Août 19, Bât. B5A 4000 Sart Tilman, Belgium
| | - Laura A Michie
- Institute of Marine Sciences, School of Biological Sciences, University of Portsmouth, Ferry Road, Portsmouth, UK.
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18
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Villalobos Solis MI, Poudel S, Bonnot C, Shrestha HK, Hettich RL, Veneault-Fourrey C, Martin F, Abraham PE. A Viable New Strategy for the Discovery of Peptide Proteolytic Cleavage Products in Plant-Microbe Interactions. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:1177-1188. [PMID: 32597696 DOI: 10.1094/mpmi-04-20-0082-ta] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Small peptides that are proteolytic cleavage products (PCPs) of less than 100 amino acids are emerging as key signaling molecules that mediate cell-to-cell communication and biological processes that occur between and within plants, fungi, and bacteria. Yet, the discovery and characterization of these molecules is largely overlooked. Today, selective enrichment and subsequent characterization by mass spectrometry-based sequencing offers the greatest potential for their comprehensive characterization, however qualitative and quantitative performance metrics are rarely captured. Herein, we addressed this need by benchmarking the performance of an enrichment strategy, optimized specifically for small PCPs, using state-of-the-art de novo-assisted peptide sequencing. As a case study, we implemented this approach to identify PCPs from different root and foliar tissues of the hybrid poplar Populus × canescens 717-1B4 in interaction with the ectomycorrhizal basidiomycete Laccaria bicolor. In total, we identified 1,660 and 2,870 Populus and L. bicolor unique PCPs, respectively. Qualitative results supported the identification of well-known PCPs, like the mature form of the photosystem II complex 5-kDa protein (approximately 3 kDa). A total of 157 PCPs were determined to be significantly more abundant in root tips with established ectomycorrhiza when compared with root tips without established ectomycorrhiza and extramatrical mycelium of L. bicolor. These PCPs mapped to 64 Populus proteins and 69 L. bicolor proteins in our database, with several of them previously implicated in biologically relevant associations between plant and fungus.
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Affiliation(s)
- Manuel I Villalobos Solis
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A
- Department of Genome Science and Technology, University of Tennessee-Knoxville, Knoxville, TN 37996, U.S.A
| | - Suresh Poudel
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A
| | - Clemence Bonnot
- UMR 1136 INRA-Université de Lorraine 'Interactions Arbres/Microorganismes', Laboratoire d'Excellence ARBRE, Centre INRA-Lorraine, 54280 Champenoux, France
| | - Him K Shrestha
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A
- Department of Genome Science and Technology, University of Tennessee-Knoxville, Knoxville, TN 37996, U.S.A
| | - Robert L Hettich
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A
| | - Claire Veneault-Fourrey
- UMR 1136 INRA-Université de Lorraine 'Interactions Arbres/Microorganismes', Laboratoire d'Excellence ARBRE, Centre INRA-Lorraine, 54280 Champenoux, France
| | - Francis Martin
- UMR 1136 INRA-Université de Lorraine 'Interactions Arbres/Microorganismes', Laboratoire d'Excellence ARBRE, Centre INRA-Lorraine, 54280 Champenoux, France
| | - Paul E Abraham
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A
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Wang J, Yuan S, Tang L, Pan X, Pu X, Li R, Shen C. Contribution of heavy metal in driving microbial distribution in a eutrophic river. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 712:136295. [PMID: 31945533 DOI: 10.1016/j.scitotenv.2019.136295] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 12/20/2019] [Accepted: 12/21/2019] [Indexed: 05/27/2023]
Abstract
Urban rivers represent an important source of freshwater. Accelerated urban development has resulted in imbalances in the water ecological environment and even eutrophication. Moreover, both natural and anthropogenic sources result in frequent heavy metal pollution in urban rivers. However, the combined impact of eutrophication and heavy metal pollution on the diversity and structure of the river microbial communities has not been adequately addressed. The microbial community distribution and predicted functions were examined in six water and sediment samples from the Laojingshui (LJS) River using metagenomic sequencing. The results showed that there were distinct differences in the microbial composition along the river. Redundancy analysis (RDA) revealed that the redox potential (Eh) was the most influential factor, explaining 76.5% of the variation (p = 0.002), and the heavy metals Zn and Cu explained 4.5 and 3.9%, respectively (p < 0.05). The results revealed that high nitrogen and phosphorus concentrations may have affected the proliferation of opportunistic plant species, such as Eichhornia crassipes, but Eh and heavy metals may have had greater impacts than N and P on the microorganisms in the water and sediment. The sensitivities of Deltaproteobacteria, Acidobacteria, Gemmatimonadetes and Nitrospira were most significant under Zn and Cu contamination when accompanied by eutrophic conditions. The expression ratio of the CYS (Cystain) gene might explain why the spatial distribution of each metal differed. This study suggests that heavy metals in eutrophication water continue to be the main factors determining the composition of microbial community, so the treatment of eutrophic water still needs to attach great importance to the complex pollution of heavy metals.
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Affiliation(s)
- Jingting Wang
- State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610065, China
| | - Shu Yuan
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Lei Tang
- State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610065, China
| | - Xiangdong Pan
- State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610065, China
| | - Xunchi Pu
- State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610065, China
| | - Ran Li
- State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610065, China.
| | - Chao Shen
- Chengdu Engineering Corporation Limited, Power China, Chengdu 610041, China
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20
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Khullar S, Reddy MS. Arsenic toxicity and its mitigation in ectomycorrhizal fungus Hebeloma cylindrosporum through glutathione biosynthesis. CHEMOSPHERE 2020; 240:124914. [PMID: 31557642 DOI: 10.1016/j.chemosphere.2019.124914] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 09/16/2019] [Accepted: 09/18/2019] [Indexed: 05/27/2023]
Abstract
Arsenic (As) contamination is one of the most daunting environmental problem bothering the whole world. Exploring a suitable bioremediation technique is an urgent need of the hour. The present study focusses on scrutinizing the ectomycorrhizal (ECM) fungus for its potential role in As detoxification and understanding the molecular mechanisms responsible for its tolerance. When exposed to increasing concentrations of external As, the ECM fungus H. cylindrosporum accumulated the metalloid intracellularly, inducing the glutathione biosynthesis pathway. The genes coding for GSH biosynthesis enzymes, γ-glutamylcysteine synthetase (Hcγ-GCS) and glutathione synthetase (HcGS) were highly regulated by As stress. Arsenic coordinately upregulated the expression of both Hcγ-GCS and HcGS genes, thus resulting in increased Hcγ-GCS and HcGS protein expressions and enzyme activities, with substantial increase in intracellular GSH. Functional complementation of the two genes (Hcγ-GCS and HcGS) in their respective yeast mutants (gsh1Δ and gsh2Δ) further validated the role of both enzymes in mitigating As toxicity. These findings clearly highlight the potential importance of GSH antioxidant defense system in regulating the As induced responses and its detoxification in ECM fungus H. cylindrosporum.
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Affiliation(s)
- Shikha Khullar
- Department of Biotechnology, Thapar Institute of Engineering & Technology, Patiala, 147004, Punjab, India
| | - M Sudhakara Reddy
- Department of Biotechnology, Thapar Institute of Engineering & Technology, Patiala, 147004, Punjab, India.
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21
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Enhanced Silver Nanoparticle Synthesis by Escherichia Coli Transformed with Candida Albicans Metallothionein Gene. MATERIALS 2019; 12:ma12244180. [PMID: 31842386 PMCID: PMC6947575 DOI: 10.3390/ma12244180] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 12/07/2019] [Accepted: 12/10/2019] [Indexed: 11/17/2022]
Abstract
In this study, the metallothionein gene of Candida albicans (C. albicans) was assembled by polymerase chain reaction (PCR), inserted into pUC19 vector, and further transformed into Escherichia coli (E. coli) DH5α cells. The capacity of these recombinant E. coli DH5α cells to synthesize silver nanoparticles was examined. Our results demonstrated that the expression of C. albicans metallothionein in E. coli promoted the bacterial tolerance to metal ions and increased yield of silver nanoparticle synthesis. The compositional and morphological analysis of the silver nanoparticles revealed that silver nanoparticles synthesized by the engineered E. coli cells are around 20 nm in size, and spherical in shape. Importantly, the silver nanoparticles produced by the engineered cells were more homogeneous in shape and size than those produced by bacteria lack of the C. albicans metallothionein. Our study provided preliminary information for further development of the engineered E. coli as a platform for large-scale production of uniform nanoparticles for various applications in nanotechnology.
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22
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Kan G, Ju Y, Zhou Y, Shi C, Qiao Y, Yang Y, Wang R, Wang X. Cloning and functional characterization of a novel metallothionein gene in Antarctic sea-ice yeast (Rhodotorula mucilaginosa). J Basic Microbiol 2019; 59:879-889. [DOI: 10.1002/jobm.201900240] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Revised: 06/07/2019] [Accepted: 06/20/2019] [Indexed: 12/16/2022]
Affiliation(s)
- Guangfeng Kan
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Yun Ju
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Ying Zhou
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Cuijuan Shi
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Yongping Qiao
- Department of Traumatology; Wendeng Osteopath Hospital; Wendeng China
| | - Yu Yang
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Ruiqi Wang
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
| | - Xiaofei Wang
- School of Marine Science and Technology, Harbin Institute of Technology at Weihai; Weihai China
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Chai L, Huang M, Cao X, Liu M, Huang Y. Potential metal-binding ability of proteins in the extracellular slime of Laccaria bicolor exposed to excessive Cu and Cd. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:20418-20427. [PMID: 31098914 DOI: 10.1007/s11356-019-05201-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 04/15/2019] [Indexed: 06/09/2023]
Abstract
Ectomycorrhizal fungi can enhance the tolerance of plants to heavy metal stress by reducing the accumulation of heavy metals in the aerial parts of the plants. Extracellular chelation is a major mechanism of heavy metal tolerance in ectomycorrhizal fungi in which extracellular slime plays a fundamental role. The objectives of this study were to investigate the potential metal-binding ability and the protein composition of extracellular slime. The extracellular slime of Laccaria bicolor (L. bicolor) cultivated under Cd2+ and Cu2+ stress was separated using various ultrasonic pre-treatments. The protein content, composition, and metal content of the extracellular slime were measured. The results showed that the protein content in the extracellular slime significantly increased under both Cd2+ and Cu2+ stress. The SDS-PAGE profile showed that Cd2+ and Cu2+ stress induced the expression of several new proteins. Heavy metal quantification revealed that the Cd content fixed in the extracellular slime accounted for 22-28% of the metal fixed by the fungal mycelia. Meanwhile, no Cu was detected in the fungal extracellular slime, implying that the extracellular slime may not be effective for the fixation of essential metallic elements such as Cu. Taken together, these results provided evidence that L. bicolor was able to ameliorate the intracellular Cd content by stimulating extracellular slime exudation and altering the composition of the proteins therein. Nevertheless, this blocking strategy may be effective only for the non-essential element Cd and was ineffective for the physiological element Cu.
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Affiliation(s)
- Liwei Chai
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, China
| | - Muke Huang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, China
| | - Xiaofeng Cao
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Mengjiao Liu
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, China
| | - Yi Huang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, China.
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Leonhardt T, Borovička J, Sácký J, Šantrůček J, Kameník J, Kotrba P. Zn overaccumulating Russula species clade together and use the same mechanism for the detoxification of excess Zn. CHEMOSPHERE 2019; 225:618-626. [PMID: 30901655 DOI: 10.1016/j.chemosphere.2019.03.062] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 02/15/2019] [Accepted: 03/10/2019] [Indexed: 06/09/2023]
Abstract
It has been firmly established that macrofungi can accumulate large amounts of heavy metals in their sporocarps. However, the mechanisms of the accumulation and storage are being uncovered only recently. We have previously documented that Russula bresadolae can accumulate over 1 g Zn kg-1 dry weight and that sequestration of a substantial proportion of overaccumulated Zn involves binding with peptides, RaZBPs, seen so far only in this species. In this work we examined Zn contents of 360 sporocarp collections from unpolluted environments covering 114 species of the genus Russula. Whilst the concentrations of Zn in most analysed species were in the range of 50-150 mg kg-1, the species of subgenera Brevipes and Compactae accumulate very low Zn (< 50 mg kg-1). We further identified five new Zn-overaccumulating species of subgenus Russula, which form with R. bresadolae a separate phylogenetic subclade in which the sporocarp Zn concentrations ranged from 326 to 845 mg kg-1. We demonstrate that R. pumila and R. ochroleuca express at least one ZBP gene and when expressed in metal-sensitive S. cerevisiae, all ZBPs protected the yeasts against Zn (and Cd) toxicity equally well. The respective ZBPs were confirmed in the native Zn-complexes of R. pumila and R. ochroleuca, which represented 80% of Zn extracted from their sporocarps. This study is the first extensive genus-wide report of metal accumulation in macrofungi, which further demonstrates that the Zn binding with cytosolic ZBP peptides is not a trait restricted only to R. bresadolae.
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Affiliation(s)
- Tereza Leonhardt
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28, Prague, Czech Republic
| | - Jan Borovička
- Institute of Geology, Czech Academy of Sciences, Rozvojová 269, 165 00, Prague 6, Czech Republic; Nuclear Physics Institute, Czech Academy of Sciences, Hlavní 130, 250 68, Husinec-Řež 130, Czech Republic
| | - Jan Sácký
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28, Prague, Czech Republic
| | - Jiří Šantrůček
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28, Prague, Czech Republic
| | - Jan Kameník
- Nuclear Physics Institute, Czech Academy of Sciences, Hlavní 130, 250 68, Husinec-Řež 130, Czech Republic
| | - Pavel Kotrba
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, 166 28, Prague, Czech Republic.
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Shi L, Deng X, Yang Y, Jia Q, Wang C, Shen Z, Chen Y. A Cr(VI)-tolerant strain, Pisolithus sp1, with a high accumulation capacity of Cr in mycelium and highly efficient assisting Pinus thunbergii for phytoremediation. CHEMOSPHERE 2019; 224:862-872. [PMID: 30852466 DOI: 10.1016/j.chemosphere.2019.03.015] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 02/11/2019] [Accepted: 03/03/2019] [Indexed: 05/18/2023]
Abstract
Ectomycorrhizal (ECM) fungi can improve the growth of pine trees and enhance their tolerance to heavy metal stress, and may also be useful during the afforestation and phytoremediation of polluted regions with pine trees. Hebeloma vinosophyllum (Cr(VI)-sensitive strain) and Pisolithus sp1 ((Cr(VI)-tolerant strain) were selected through liquid culture experiment, and were used in symbiosis with Japanese black pine (Pinus thunbergii) in pot experiments, to determine their potential for improving phytoremediation of Cr(VI)-contaminated soils. Our results indicated that Pisolithus sp1 also had a significantly higher accumulation of Cr than H. vinosophyllum in mycelium under the same Cr(VI) treatments in liquid culture experiment. The tolerance index of Pisolithus sp1 ECM seedlings' shoots and roots to Cr(VI) were significantly higher than that of H. vinosophyllum ECM and non-ectomycorrhizal (NM) seedlings while the total accumulated Cr per seedling in Pisolithus sp1 ECM seedlings were 1.50-1.96 and 2.83-27.75 fold higher that of H. vinosophyllum ECM and NM seedlings, respectively, within 0-800 mg kg-1 Cr(VI) treatments in pot experiments. In addition, the significant differences ratios of photosynthetic rate, stomatal conductance, transpiration rate and intercellular CO2 concentration between Pisolithus sp1 ECM and NM seedlings were significantly higher than those between H. vinosophyllum ECM and NM seedlings under 400 and 800 mg kg-1 Cr(VI) treatments. Compared with the control (no plant), and planting NM or H. vinosophyllum ECM seedlings, the planting of Pisolithus sp1 ECM seedlings significantly reduced the percentage content of exchangeable Cr in the soil.
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Affiliation(s)
- Liang Shi
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China
| | - Xiaopeng Deng
- Yunnan Academy of Tobacco Agriculture Science, Yunnan, 650021, China
| | - Yang Yang
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China
| | - Qiyuan Jia
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China
| | - Chunchun Wang
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China
| | - Zhenguo Shen
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, Nanjing Agiricultural University, Nanjing, 210095, China; National Joint Local Engineering Research Center for Rural Land Resources Use and Consolidation, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yahua Chen
- College of Life Sciences, Nanjing Agiricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, Nanjing Agiricultural University, Nanjing, 210095, China; National Joint Local Engineering Research Center for Rural Land Resources Use and Consolidation, Nanjing Agricultural University, Nanjing, 210095, China.
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Shi W, Zhang Y, Chen S, Polle A, Rennenberg H, Luo ZB. Physiological and molecular mechanisms of heavy metal accumulation in nonmycorrhizal versus mycorrhizal plants. PLANT, CELL & ENVIRONMENT 2019; 42:1087-1103. [PMID: 30375657 DOI: 10.1111/pce.13471] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 10/26/2018] [Accepted: 10/26/2018] [Indexed: 06/08/2023]
Abstract
Uptake, translocation, detoxification, and sequestration of heavy metals (HMs) are key processes in plants to deal with excess amounts of HM. Under natural conditions, plant roots often establish ecto- and/or arbuscular-mycorrhizae with their fungal partners, thereby altering HM accumulation in host plants. This review considers the progress in understanding the physiological and molecular mechanisms involved in HM accumulation in nonmycorrhizal versus mycorrhizal plants. In nonmycorrhizal plants, HM ions in the cells can be detoxified with the aid of several chelators. Furthermore, HMs can be sequestered in cell walls, vacuoles, and the Golgi apparatus of plants. The uptake and translocation of HMs are mediated by members of ZIPs, NRAMPs, and HMAs, and HM detoxification and sequestration are mainly modulated by members of ABCs and MTPs in nonmycorrhizal plants. Mycorrhizal-induced changes in HM accumulation in plants are mainly due to HM sequestration by fungal partners and improvements in the nutritional and antioxidative status of host plants. Furthermore, mycorrhizal fungi can trigger the differential expression of genes involved in HM accumulation in both partners. Understanding the molecular mechanisms that underlie HM accumulation in mycorrhizal plants is crucial for the utilization of fungi and their host plants to remediate HM-contaminated soils.
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Affiliation(s)
- Wenguang Shi
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Yuhong Zhang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
| | - Shaoliang Chen
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Andrea Polle
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
- Forest Botany and Tree Physiology, University of Goettingen, 37077, Göttingen, Germany
| | - Heinz Rennenberg
- Institute for Forest Sciences, University of Freiburg, 79110, Freiburg, Germany
| | - Zhi-Bin Luo
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, 100091, China
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Shoaib A, Nisar Z, Javaid A, Khurshid S, Javed S. Necrotrophic fungus Macrophomina phaseolina tolerates chromium stress through regulating antioxidant enzymes and genes expression (MSN1 and MT). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:12446-12458. [PMID: 30847809 DOI: 10.1007/s11356-019-04457-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2018] [Accepted: 02/03/2019] [Indexed: 06/09/2023]
Abstract
Cr(VI) tolerance level of phytopathogenic fungus viz., Macrophomina phaseolina (Tassi) Goid was assessed through growth, morphological, physiological, and metal accumulation assays. Initially, the fungus growth assays indicated that the fungus can grow over concentration range of 20-3000 ppm and exhibited high tolerance index (0.88-1.00) and minimum inhibitory concentration at 3500 ppm of Cr. Observations under compound and scanning electron microscope un-revealed the structural features of hyphae under Cr stress as thick-walled, aggregated, branched, short and broken, along with attachment of irregular objects on them. Metal accumulation analysis revealed reduction in Cr(VI) accumulation by the fungus with increase in metal concentration in the growth medium (500-3000 ppm). Cr stress induced upregulation of antioxidant enzyme activities (catalase, peroxidase and polyphenol oxidase), expression of genes (MSN1 and metallothionein) and appearnace of new protein bands suggesting the possible role in protection and survival of M. phaseolina against Cr(VI)-induced oxidative stress. This study concludes that interference of Cr with growth and physiological process of M. phaseolina could affect its infection level on its host plant, therefore, synergistic action of two factors needs to be addressed, which may aid to guide future research efforts in understanding impact of plant-pathogen-heavy metal interaction.
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Affiliation(s)
- Amna Shoaib
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan.
| | - Zahra Nisar
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Arshad Javaid
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Saba Khurshid
- Lahore College for Women University, Lahore, Pakistan
| | - Sidrah Javed
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
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Khullar S, Sudhakara Reddy M. Cadmium and arsenic responses in the ectomycorrhizal fungus Laccaria bicolor: glutathione metabolism and its role in metal(loid) homeostasis. ENVIRONMENTAL MICROBIOLOGY REPORTS 2019; 11:53-61. [PMID: 30411517 DOI: 10.1111/1758-2229.12712] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 11/01/2018] [Accepted: 11/02/2018] [Indexed: 05/27/2023]
Abstract
Ectomycorrhizal fungi play an important role in protecting their host plant from metal(loid) stresses by synthesizing various thiol rich compounds like metallothioneins and glutathione. We investigated the effect of cadmium (Cd) and arsenic (As) stress with a specific interest on glutathione (GSH) in the ectomycorrhizal fungus Laccaria bicolor. The total GSH levels inside the cell were significantly increased with increase in external metal(loid) stress. An analysis of the transcript levels of genes responsible for GSH synthesis, γ-glutamylcysteine synthetase (Lbγ-GCS) and glutathione synthetase (LbGS), using qPCR revealed that expression of both genes increased as a function of external metal(loid) concentration. The enzyme activity of both Lbγ-GCS and LbGS were increased with increase in external Cd and As concentration. Further, the functional role of Lbγ-GCS and LbGS genes in response to Cd and As stress was studied using their respective yeast mutant strains gsh1 Δ and gsh2 Δ . The mutant strains successfully expressed the two genes resulting in wild-type phenotype restoration of Cd and As tolerance. From these results, it was concluded that GSH act as a core component in the mycorrhizal defence system under Cd and As stress for metal(loid) homeostasis and detoxification.
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Affiliation(s)
- Shikha Khullar
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab, 147004, India
| | - M Sudhakara Reddy
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab, 147004, India
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29
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Cadmium induced glutathione bioaccumulation mediated by γ-glutamylcysteine synthetase in ectomycorrhizal fungus Hebeloma cylindrosporum. Biometals 2018; 32:101-110. [DOI: 10.1007/s10534-018-00164-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Accepted: 12/03/2018] [Indexed: 01/18/2023]
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30
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Isolation of multi-metal tolerant ubiquitin fusion protein from metal polluted soil by metatranscriptomic approach. J Microbiol Methods 2018; 152:119-125. [PMID: 30077694 DOI: 10.1016/j.mimet.2018.08.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Revised: 07/31/2018] [Accepted: 08/01/2018] [Indexed: 11/21/2022]
Abstract
Release of heavy metals into the soil pose a significant threat to the environment and public health because of their toxicity accumulation in the food chain and persistence in nature. The potential of soil microbial diversity of cadmium (Cd) contaminated site was exploited through functional metatranscriptomics by construction of cDNA libraries A (0.1-0.5 kb), B (0.5-1.0 kb), and C (1-4 kb) of variable size, from the eukaryotic mRNA. The cDNA library B was further screened for cadmium tolerant transcripts through yeast complementation system. We are reporting one of the transformants ycf1ΔPLBe1 capable of tolerating high concentrations of Cd (40 μM - 80 μM). Sequence analysis revealed that PLBe1 cDNA showed homology with ubiquitin domain containing protein fused with AN1 type zinc finger protein of Acanthameoba castellani. Further, this cDNA was tested for its tolerance towards other heavy metals such as copper (Cu), zinc (Zn) and cobalt (Co). Functional complementation assay of cDNA PLBe1 showed a range of tolerance towards copper (150 μM - 300 μM), zinc (10 mM - 12 mM) and cobalt (2 mM - 4 mM). This study promulgates PLBe1 as credible member of multi-metal tolerant gene in the eukaryotic soil microbial community and can be used as potential member to revitalise the heavy metal contaminated sites or can be used as a biomarker to detect heavy metal contamination in the soil environment.
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31
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Kalsotra T, Khullar S, Agnihotri R, Reddy MS. Metal induction of two metallothionein genes in the ectomycorrhizal fungus Suillus himalayensis and their role in metal tolerance. MICROBIOLOGY-SGM 2018; 164:868-876. [PMID: 29762106 DOI: 10.1099/mic.0.000666] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Metallothioneins (MTs) are small proteins with highly conserved cysteine residues and are involved in metal homeostasis and metal detoxification. Two metallothionein genes ShMT1 and ShMT2 from the ectomycorrhizal fungus Suillus himalayensis were characterised for their potential role in heavy metal detoxification. The response of these MTs to the exogenous concentrations of copper and cadmium was studied by qPCR analysis. The exogenous copper but not the cadmium at the tested concentrations induced the expression of the MT genes. The functional role of ShMTs was validated by expressing the two genes through functional complementation in yeast mutant strain cup1Δ (copper-sensitive), ycf1Δ (cadmium- sensitive) and zrc1Δ (zinc-sensitive). The mutant strain successfully expressed the two genes resulting in wild-type phenotype restoration of copper, cadmium and zinc tolerance. The present study shows that the ectomycorrhizal fungus S. himalayensis encodes two metallothionein genes (ShMT1 and ShMT2) which are more inducible by copper than cadmium and could play an important role in their detoxification.
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Affiliation(s)
- Tania Kalsotra
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala 147004, Punjab, India
| | - Shikha Khullar
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala 147004, Punjab, India
| | - Radhika Agnihotri
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala 147004, Punjab, India
| | - Mondem Sudhakara Reddy
- Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala 147004, Punjab, India
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Beneš V, Leonhardt T, Sácký J, Kotrba P. Two P 1B-1-ATPases of Amanita strobiliformis With Distinct Properties in Cu/Ag Transport. Front Microbiol 2018; 9:747. [PMID: 29740406 PMCID: PMC5924815 DOI: 10.3389/fmicb.2018.00747] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 04/03/2018] [Indexed: 01/02/2023] Open
Abstract
As we have shown previously, the Cu and Ag concentrations in the sporocarps of Ag-hyperaccumulating Amanita strobiliformis are correlated, and both metals share the same uptake system and are sequestered by the same metallothioneins intracellularly. To further improve our knowledge of the Cu and Ag handling in A. strobiliformis cells, we searched its transcriptome for the P1B-1-ATPases, recognizing Cu+ and Ag+ for transport. We identified transcripts encoding 1097-amino acid (AA) AsCRD1 and 978-AA AsCCC2, which were further subjected to functional studies in metal sensitive Saccharomyces cerevisiae. The expression of AsCRD1 conferred highly increased Cu and Ag tolerance to metal sensitive yeasts in which the functional AsCRD1:GFP (green fluorescent protein) fusion localized exclusively to the tonoplast, indicating that the AsCRD1-mediated Cu and Ag tolerance was a result of vacuolar sequestration of the metals. Increased accumulation of AsCRD1 transcripts observed in A. strobiliformis mycelium upon the treatments with Cu and Ag (8.7- and 4.5-fold in the presence of 5 μM metal, respectively) supported the notion that AsCRD1 can be involved in protection of the A. strobiliformis cells against the toxicity of both metals. Neither Cu nor Ag affected the levels of AsCCC2 transcripts. Heterologous expression of AsCCC2 in mutant yeasts did not contribute to Cu tolerance, but complemented the mutant genotype of the S. cerevisiae ccc2Δ strain. Consistent with the role of the yeast Ccc2 in the trafficking of Cu from cytoplasm to nascent proteins via post-Golgi, the GFP fluorescence in AsCCC2-expressing ccc2Δ yeasts localized among Golgi-like punctate foci within the cells. The AsCRD1- and AsCCC2-associated phenotypes were lost in yeasts expressing mutant transporter variants in which a conserved phosphorylation/dephosphorylation site was altered. Altogether, the data support the roles of AsCRD1 and AsCCC2 as genuine P1B-1-ATPases, and indicate their important functions in the removal of toxic excess of Cu and Ag from the cytoplasm and charging the endomembrane system with Cu, respectively.
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Affiliation(s)
- Vojtěch Beneš
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Prague, Czechia
| | - Tereza Leonhardt
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Prague, Czechia
| | - Jan Sácký
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Prague, Czechia
| | - Pavel Kotrba
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Prague, Czechia
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Nguyen H, Rineau F, Vangronsveld J, Cuypers A, Colpaert JV, Ruytinx J. A novel, highly conserved metallothionein family in basidiomycete fungi and characterization of two representative SlMTa
and SlMTb
genes in the ectomycorrhizal fungus Suillus luteus. Environ Microbiol 2017; 19:2577-2587. [DOI: 10.1111/1462-2920.13729] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2015] [Revised: 03/03/2017] [Accepted: 03/04/2017] [Indexed: 12/11/2022]
Affiliation(s)
- Hoai Nguyen
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
| | - François Rineau
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
| | - Jaco Vangronsveld
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
| | - Ann Cuypers
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
| | - Jan V. Colpaert
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
| | - Joske Ruytinx
- Centre for Environmental Sciences, Environmental Biology; Hasselt University; Agoralaan Building D Diepenbeek 3590 Belgium
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Yadav S, Srivastava J. Cadmium Phytoextraction and Induced Antioxidant Gene Response in Moringa oleifera Lam. ACTA ACUST UNITED AC 2017. [DOI: 10.3923/ajpp.2017.58.70] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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35
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Mundra S, Bahram M, Eidesen PB. Alpine bistort (Bistorta vivipara) in edge habitat associates with fewer but distinct ectomycorrhizal fungal species: a comparative study of three contrasting soil environments in Svalbard. MYCORRHIZA 2016; 26:809-818. [PMID: 27325524 DOI: 10.1007/s00572-016-0716-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Accepted: 06/14/2016] [Indexed: 06/06/2023]
Abstract
Bistorta vivipara is a widespread arctic-alpine ectomycorrhizal (ECM) plant species. Recent findings suggest that fungal communities associated with B. vivipara roots appear random over short distances, but at larger scales, environmental filtering structure fungal communities. Habitats in highly stressful environments where specialist species with narrower niches may have an advantage represent unique opportunity to test the effect of environmental filtering. We utilised high-throughput amplicon sequencing to identify ECM communities associated with B. vivipara in Svalbard. We compared ECM communities in a core habitat where B. vivipara is frequent (Dryas-heath) with edge habitats representing extremes in terms of nutrient availability where B. vivipara is less frequent (bird-manured meadow and a nutrient-depleted mine tilling). Our analysis revealed that soil conditions in edge habitats favour less diverse but more distinct ECM fungal communities with functional traits adapted to local conditions. ECM richness was overall lower in both edge habitats, and the taxonomic compositions of ECM fungi were in line with our functional expectations. Stress-tolerant genera such as Laccaria and Hebeloma were abundant in nutrient-poor mine site whereas functional competitors genera such as Lactarius and Russula were dominant in the nutrient-rich bird-cliff site. Our results suggest that ECM communities in rare edge habitats are most likely not subsets of the larger pool of ECM fungi found in natural tundra, and they may represent a significant contribution to the overall diversity of ECM fungi in the Arctic.
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Affiliation(s)
- Sunil Mundra
- The University Centre in Svalbard, P.O. Box 156, Longyearbyen, NO-9171, Norway.
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, P.O. Box 1066, Blindern, Oslo, NO-0316, Norway.
| | - Mohammad Bahram
- Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, SE 75236, Sweden
- Institute of Ecology and Earth Sciences, Tartu University, 14A Ravila, Tartu, 50411, Estonia
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Cejpková J, Gryndler M, Hršelová H, Kotrba P, Řanda Z, Synková I, Borovička J. Bioaccumulation of heavy metals, metalloids, and chlorine in ectomycorrhizae from smelter-polluted area. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2016; 218:176-185. [PMID: 27569718 DOI: 10.1016/j.envpol.2016.08.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Revised: 07/26/2016] [Accepted: 08/03/2016] [Indexed: 05/07/2023]
Abstract
Ectomycorrhizal (ECM) fungi contribute to the survival of host trees on metal-rich soils by reducing the transfer of toxic metals into roots. However, little is known about the ability of ECM fungi to accumulate elements in ectomycorrhizae (ECMs). Here we report Ag, As, Cd, Cl, Cu, Sb, V, and Zn contents in wild-grown Norway spruce ECMs collected in a smelter-polluted area at Lhota near Příbram, Czech Republic. The ECMs data were compared with the element concentrations determined in the corresponding non-mycorrhizal fine roots, soils, and soil extracts. Bioaccumulation factors were calculated to differentiate the element accumulation ability of ECMs inhabited by different mycobionts, which were identified by ITS rDNA sequencing. Among the target elements, the highest contents were observed for Ag, Cl, Cd, and Zn; Imleria badia ECMs showed the highest capability to accumulate these elements. ECMs of Amanita muscaria, but not of other species, accumulated V. The analysis of the proportions of I. badia and A. muscaria mycelia in ECMs by using species-specific quantitative real-time PCR revealed variable extent of the colonization of roots, with median values close to 5% (w/w). Calculated Ag, Cd, Zn and Cl concentrations in the mycelium of I. badia ECMs were 1 680, 1 510, 2 670, and 37,100 mg kg-1 dry weight, respectively, indicating substantial element accumulation capacity of hyphae of this species in ECMs. Our data strengthen the idea of an active role of ECM fungi in soil-fungal-plant interactions in polluted environments.
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Affiliation(s)
- Jaroslava Cejpková
- Nuclear Physic Institute, v.v.i., Czech Academy of Sciences, Řež 130, CZ-25068 Husinec-Řež, Czech Republic; Institute of Geochemistry, Mineralogy and Mineral Resources, Faculty of Science, Charles University, Albertov 6, CZ-12843 Prague 2, Czech Republic
| | - Milan Gryndler
- Institute of Microbiology, v.v.i., Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic; Faculty of Sciences, J. E. Purkyně University, České mládeže 8, CZ-40096 Ústí nad Labem, Czech Republic
| | - Hana Hršelová
- Institute of Microbiology, v.v.i., Czech Academy of Sciences, Vídeňská 1083, CZ-14220 Prague 4, Czech Republic
| | - Pavel Kotrba
- Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 3, CZ-16628 Prague 6, Czech Republic
| | - Zdeněk Řanda
- Nuclear Physic Institute, v.v.i., Czech Academy of Sciences, Řež 130, CZ-25068 Husinec-Řež, Czech Republic
| | - Iva Synková
- Nuclear Physic Institute, v.v.i., Czech Academy of Sciences, Řež 130, CZ-25068 Husinec-Řež, Czech Republic; Institute of Geochemistry, Mineralogy and Mineral Resources, Faculty of Science, Charles University, Albertov 6, CZ-12843 Prague 2, Czech Republic
| | - Jan Borovička
- Nuclear Physic Institute, v.v.i., Czech Academy of Sciences, Řež 130, CZ-25068 Husinec-Řež, Czech Republic; Institute of Geology, v.v.i., Academy of Sciences of the Czech Republic, CZ-16500 Prague 6, Czech Republic.
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Hložková K, Matěnová M, Žáčková P, Strnad H, Hršelová H, Hroudová M, Kotrba P. Characterization of three distinct metallothionein genes of the Ag-hyperaccumulating ectomycorrhizal fungus Amanita strobiliformis. Fungal Biol 2016; 120:358-69. [DOI: 10.1016/j.funbio.2015.11.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Revised: 10/19/2015] [Accepted: 11/12/2015] [Indexed: 01/07/2023]
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Accumulation of Ag and Cu in Amanita strobiliformis and characterization of its Cu and Ag uptake transporter genes AsCTR2 and AsCTR3. Biometals 2016; 29:249-64. [DOI: 10.1007/s10534-016-9912-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 01/28/2016] [Indexed: 10/22/2022]
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Reddy MS, Kour M, Aggarwal S, Ahuja S, Marmeisse R, Fraissinet-Tachet L. Metal induction of a Pisolithus albus metallothionein and its potential involvement in heavy metal tolerance during mycorrhizal symbiosis. Environ Microbiol 2016; 18:2446-54. [PMID: 26626627 DOI: 10.1111/1462-2920.13149] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Revised: 11/19/2015] [Accepted: 11/22/2015] [Indexed: 01/09/2023]
Abstract
Metallothioneins (MTs) are small, cysteine-rich peptides involved in intracellular sequestration of heavy metals in eukaryotes. We examined the role in metal homeostasis and detoxification of an MT from the ectomycorrhizal fungus Pisolithus albus (PaMT1). PaMT1 encodes a 35 amino acid-long polypeptide, with 7 cysteine residues; most of them part of a C-x-C motif found in other known basidiomycete MTs. The expression levels of PaMT1 increased as a function of increased external Cu and Cd concentrations and were higher with Cu than with Cd. Heterologous complementation assays in metal-sensitive yeast mutants indicated that PaMT1 encodes a polypeptide capable of conferring higher tolerance to both Cu and Cd. Eucalyptus tereticornis plantlets colonized with P. albus grown in the presence of Cu and Cd showed better growth compared with those with non-mycorrhizal plants. Higher PaMT1 expression levels were recorded in mycorrhizal plants grown in the presence of Cu and Cd compared with those in control mycorrhizal plants not exposed to heavy metals. These data provide the first evidence to our knowledge that fungal MTs could protect ectomycorrhizal fungi from heavy metal stress and in turn help the plants to establish in metal-contaminated sites.
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Affiliation(s)
- M Sudhakara Reddy
- Department of Biotechnology, Thapar University, Bhadson Road, Patiala, 147 004, India
| | - Manpreet Kour
- Department of Biotechnology, Thapar University, Bhadson Road, Patiala, 147 004, India
| | - Sipla Aggarwal
- Department of Biotechnology, Thapar University, Bhadson Road, Patiala, 147 004, India
| | - Shanky Ahuja
- Department of Biotechnology, Thapar University, Bhadson Road, Patiala, 147 004, India
| | - Roland Marmeisse
- Microbial Ecology, CNRS UMR 5557, USC INRA 1364, Université Lyon1, Université de Lyon, F-69622, Villeurbanne, France
| | - Laurence Fraissinet-Tachet
- Microbial Ecology, CNRS UMR 5557, USC INRA 1364, Université Lyon1, Université de Lyon, F-69622, Villeurbanne, France
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