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Hashem S, AbdElgawad H, Mohamed F, Hegab MM, AlGarawi AM, Okla MK, Sayed M. Zn-Al and Mg-Al layered double hydroxide nanoparticles improved primary and secondary metabolism of geranium plants. RSC Adv 2024; 14:28376-28389. [PMID: 39239289 PMCID: PMC11375793 DOI: 10.1039/d4ra04280h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 08/24/2024] [Indexed: 09/07/2024] Open
Abstract
Layer double hydroxide (LDH) nanoparticles (NPs) have been applied to enhance plant growth and productivity. However, their effects on carbon and nitrogen metabolism of aromatic plants, are not well understood. Therefore, we investigated the impact of foliar application of Zn-Al LDH and Mg-Al LDH NPs (10 ppm) on the growth and metabolism of geranium plants. Zn-Al LDH and Mg-Al LDH NPs significantly increased the dry biomass, photosynthetic pigment, and Zn and Mg uptake by treated plants. These increases were consistent with increased primary metabolism such as soluble sugars and their metabolic enzymes (invertase and amylase). The supply of high sugar levels induced TCA organic accumulation, providing a pathway for amino acid biosynthesis. Among amino acids, proline level and its biosynthetic enzymes such as pyrroline-5-carboxylate reductase (P5CR), ornithine aminotransferase (OAT), and pyrroline-5-carboxylate synthetase (P5CS), glutamine synthetase (GS), and arginase were increased. Increased primary metabolites can then be channeled into secondary metabolic pathways, leading to higher levels of secondary metabolites including tocopherols, phenolics, and flavonoids. These observed increases in primary and secondary metabolites also improve the biological value of geranium plants. Overall, our research highlights the potential of Zn-Al LDH and Mg-Al LDH NPs as elicitors to enhance metabolism in geranium plants, thereby improving their growth bioactivity.
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Affiliation(s)
- Shimaa Hashem
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University Egypt
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp Antwerpen Belgium
| | - Fatma Mohamed
- Chemistry Department, Faculty of Science, Beni-Suef University Beni-Suef 62514 Egypt
- Nanophotonic and Applications (NPA) Lab, Faculty of Science, Beni-Suef University Beni-Suef 62514 Egypt
- Materials Science Research Lab, Chemistry Department, Faculty of Science, Beni-Suef University Beni-Suef 62514 Egypt
| | - Momtaz M Hegab
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University Egypt
| | - Amal Mohamed AlGarawi
- Botany and Microbiology Department, College of Science, King Saud University PO Box 2455 Riyadh 11451 Saudi Arabia
| | - Mohammad K Okla
- Botany and Microbiology Department, College of Science, King Saud University PO Box 2455 Riyadh 11451 Saudi Arabia
| | - Mona Sayed
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University Egypt
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Miao F, Wang Y, Haq NU, Lyu MJA, Zhu XG. Rewiring of primary metabolism for ammonium recycling under short-term low CO 2 treatment - its implication for C 4 evolution. FRONTIERS IN PLANT SCIENCE 2024; 15:1322261. [PMID: 39148616 PMCID: PMC11324553 DOI: 10.3389/fpls.2024.1322261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 07/04/2024] [Indexed: 08/17/2024]
Abstract
The dramatic decrease in atmospheric CO2 concentration during Oligocene was proposed as directly linked to C4 evolution. However, it remains unclear how the decreased CO2 concentration directly facilitate C4 evolution, besides its role as a selection pressure. We conducted a systematic transcriptomics and metabolomics analysis under short-term low CO2 condition and found that Arabidopsis grown under this condition showed 1) increased expression of most genes encoding C4-related enzymes and transporters; 2) increased expression of genes involved in photorespiration and pathways related to carbon skeleton generation for ammonium refixation; 3) increased expression of genes directly involved in ammonium refixation. Furthermore, we found that in vitro treatment of leaves with NH4 + induced a similar pattern of changes in C4 related genes and genes involved in ammonium refixation. These data support the view that Arabidopsis grown under short-term low CO2 conditions rewired its metabolism to supply carbon skeleton for ammonium recycling, during which process the expression of C4 genes were up-regulated as a result of a hitchhiking process. This study provides new insights into the adaptation of the C3 model plant Arabidopsis under low CO2 conditions and suggests that low CO2 can facilitate the evolution of C4 photosynthesis beyond the commonly assumed role of being a selection pressure.
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Affiliation(s)
- Fenfen Miao
- University of Chinese Academy of Sciences (UCAS), Beijing, China
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, China
| | - Ying Wang
- University of Chinese Academy of Sciences (UCAS), Beijing, China
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, China
| | - Noor Ui Haq
- Department of Computer Science and Bioinformatics, Khushal Khan Khattak University, Karak, Khyber-Pakhtunkhwa, Pakistan
| | - Ming-Ju Amy Lyu
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, China
| | - Xin-Guang Zhu
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai, China
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Marín-Peña AJ, Vega-Mas I, Busturia I, de la Osa C, González-Moro MB, Monreal JA, Marino D. Root phosphoenolpyruvate carboxylase activity is essential for Sorghum bicolor tolerance to ammonium nutrition. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108312. [PMID: 38154297 DOI: 10.1016/j.plaphy.2023.108312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 12/05/2023] [Accepted: 12/23/2023] [Indexed: 12/30/2023]
Abstract
Phosphoenolpyruvate carboxylase (PEPC; EC 4.1.1.31) is an enzyme family with pivotal roles in plant carbon and nitrogen metabolism. A main role for non-photosynthetic PEPC is as anaplerotic enzyme to load tricarboxylic acid (TCA) cycle with carbon skeletons that compensate the intermediates diverted for biomolecule synthesis such as amino acids. When plants are grown under ammonium (NH4+) nutrition, the excessive uptake of NH4+ often provokes a stress situation. When plants face NH4+ stress, N assimilation is greatly induced and thus, requires the supply of carbon skeletons coming from TCA cycle. In this work, we addressed the importance of root PEPC and TCA cycle for sorghum (Sorghum bicolor L. Moench), a C4 cereal crop, grown under ammonium nutrition. To do so, we used RNAi sorghum lines that display a decrease expression of SbPPC3 (Ppc3 lines), the main root PEPC isoform, and reduced root PEPC activity. SbPPC3 silencing provoked ammonium hypersensitivity, meaning lower biomass accumulation in Ppc3 respect to WT plants when growing under ammonium nutrition. The silenced plants presented a deregulation of primary metabolism as highlighted by the accumulation of NH4+ in the root and the alteration of normal TCA functioning, which was evidenced by the accumulation of organic acids in the root under ammonium nutrition. Altogether, our work evidences the importance of non-photosynthetic PEPC, and root TCA cycle, in sorghum to deal with high external NH4+ availability.
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Affiliation(s)
- A J Marín-Peña
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940, Leioa, Spain
| | - I Vega-Mas
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940, Leioa, Spain
| | - I Busturia
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940, Leioa, Spain
| | - C de la Osa
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, 41012, Sevilla, Spain
| | - M B González-Moro
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940, Leioa, Spain
| | - J A Monreal
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, 41012, Sevilla, Spain.
| | - D Marino
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), 48940, Leioa, Spain.
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Hidese R, Ohbayashi R, Kato Y, Matsuda M, Tanaka K, Imamura S, Ashida H, Kondo A, Hasunuma T. ppGpp accumulation reduces the expression of the global nitrogen homeostasis-modulating NtcA regulon by affecting 2-oxoglutarate levels. Commun Biol 2023; 6:1285. [PMID: 38145988 PMCID: PMC10749895 DOI: 10.1038/s42003-023-05632-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 11/23/2023] [Indexed: 12/27/2023] Open
Abstract
The cyanobacterium Synechococcus elongatus PCC 7942 accumulates alarmone guanosine tetraphosphate (ppGpp) under stress conditions, such as darkness. A previous study observed that artificial ppGpp accumulation under photosynthetic conditions led to the downregulation of genes involved in the nitrogen assimilation system, which is activated by the global nitrogen regulator NtcA, suggesting that ppGpp regulates NtcA activity. However, the details of this mechanism have not been elucidated. Here, we investigate the metabolic responses associated with ppGpp accumulation by heterologous expression of the ppGpp synthetase RelQ. The pool size of 2-oxoglutarate (2-OG), which activates NtcA, is significantly decreased upon ppGpp accumulation. De novo 13C-labeled CO2 assimilation into the Calvin-Benson-Bassham cycle and glycolytic intermediates continues irrespective of ppGpp accumulation, whereas the labeling of 2-OG is significantly decreased under ppGpp accumulation. The low 2-OG levels in the RelQ overexpression cells could be because of the inhibition of metabolic enzymes, including aconitase, which are responsible for 2-OG biosynthesis. We propose a metabolic rearrangement by ppGpp accumulation, which negatively regulates 2-OG levels to maintain carbon and nitrogen balance.
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Affiliation(s)
- Ryota Hidese
- Graduate School of Science, Innovation and Technology, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Ryudo Ohbayashi
- Laboratory for Chemistry and Life Science Institute of Innovative Research, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
- Department of Biological Sciences, Faculty of Science, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529, Japan
| | - Yuichi Kato
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Mami Matsuda
- Graduate School of Science, Innovation and Technology, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Kan Tanaka
- Laboratory for Chemistry and Life Science Institute of Innovative Research, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
| | - Sousuke Imamura
- Laboratory for Chemistry and Life Science Institute of Innovative Research, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
- NTT Space Environment and Enegy Laboratories, Nippon Telegraph and Telephone Corporation, 3-9-11 Midori-cho, Musashino-shi, Tokyo, 180-8585, Japan
| | - Hiroki Ashida
- Graduate School of Human Development and Environment, Kobe University, 3-11 Tsurukabuto, Nada-Ku, Kobe, 657-8501, Japan
| | - Akihiko Kondo
- Graduate School of Science, Innovation and Technology, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Research Center for Sustainable Resource Science, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa, 230-0045, Japan
| | - Tomohisa Hasunuma
- Graduate School of Science, Innovation and Technology, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan.
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan.
- Research Center for Sustainable Resource Science, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa, 230-0045, Japan.
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Shi H, Ernst E, Heinzel N, McCorkle S, Rolletschek H, Borisjuk L, Ortleb S, Martienssen R, Shanklin J, Schwender J. Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis. BMC PLANT BIOLOGY 2023; 23:458. [PMID: 37789269 PMCID: PMC10546790 DOI: 10.1186/s12870-023-04480-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 09/20/2023] [Indexed: 10/05/2023]
Abstract
BACKGROUND Duckweeds are small, rapidly growing aquatic flowering plants. Due to their ability for biomass production at high rates they represent promising candidates for biofuel feedstocks. Duckweeds are also excellent model organisms because they can be maintained in well-defined liquid media, usually reproduce asexually, and because genomic resources are becoming increasingly available. To demonstrate the utility of duckweed for integrated metabolic studies, we examined the metabolic adaptation of growing Lemna gibba cultures to different nutritional conditions. RESULTS To establish a framework for quantitative metabolic research in duckweeds we derived a central carbon metabolism network model of Lemna gibba based on its draft genome. Lemna gibba fronds were grown with nitrate or glutamine as nitrogen source. The two conditions were compared by quantification of growth kinetics, metabolite levels, transcript abundance, as well as by 13C-metabolic flux analysis. While growing with glutamine, the fronds grew 1.4 times faster and accumulated more protein and less cell wall components compared to plants grown on nitrate. Characterization of photomixotrophic growth by 13C-metabolic flux analysis showed that, under both metabolic growth conditions, the Calvin-Benson-Bassham cycle and the oxidative pentose-phosphate pathway are highly active, creating a futile cycle with net ATP consumption. Depending on the nitrogen source, substantial reorganization of fluxes around the tricarboxylic acid cycle took place, leading to differential formation of the biosynthetic precursors of the Asp and Gln families of proteinogenic amino acids. Despite the substantial reorganization of fluxes around the tricarboxylic acid cycle, flux changes could largely not be associated with changes in transcripts. CONCLUSIONS Through integrated analysis of growth rate, biomass composition, metabolite levels, and metabolic flux, we show that Lemna gibba is an excellent system for quantitative metabolic studies in plants. Our study showed that Lemna gibba adjusts to different nitrogen sources by reorganizing central metabolism. The observed disconnect between gene expression regulation and metabolism underscores the importance of metabolic flux analysis as a tool in such studies.
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Affiliation(s)
- Hai Shi
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Evan Ernst
- Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY, 11724, USA
- Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY, 11724, USA
| | - Nicolas Heinzel
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466, Seeland OT Gatersleben, Germany
| | - Sean McCorkle
- Brookhaven National Laboratory, Computational Science Initiative, Upton, NY, 11973, USA
| | - Hardy Rolletschek
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466, Seeland OT Gatersleben, Germany
| | - Ljudmilla Borisjuk
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466, Seeland OT Gatersleben, Germany
| | - Stefan Ortleb
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466, Seeland OT Gatersleben, Germany
| | - Robert Martienssen
- Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY, 11724, USA
- Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY, 11724, USA
| | - John Shanklin
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Jorg Schwender
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA.
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6
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Khan MN, Siddiqui MH, Alhussaen KM, El-Alosey AR, AlOmrani MAM, Kalaji HM. Titanium dioxide nanoparticles require K + and hydrogen sulfide to regulate nitrogen and carbohydrate metabolism during adaptive response to drought and nickel stress in cucumber. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 334:122008. [PMID: 37356795 DOI: 10.1016/j.envpol.2023.122008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 04/21/2023] [Accepted: 06/08/2023] [Indexed: 06/27/2023]
Abstract
Crop plants face severe yield losses worldwide owing to their exposure to multiple abiotic stresses. The study described here, was conducted to comprehend the response of cucumber seedlings to drought (induced by 15% w/v polyethylene glycol 8000; PEG) and nickel (Ni) stress in presence or absence of titanium dioxide nanoparticle (nTiO2). In addition, it was also investigated how nitrogen (N) and carbohydrate metabolism, as well as the defense system, are affected by endogenous potassium (K+) and hydrogen sulfide (H2S). Cucumber seedlings were subjected to Ni stress and drought, which led to oxidative stress and triggered the defense system. Under the stress, N and carbohydrate metabolism were differentially affected. Supplementation of the stressed seedlings with nTiO2 (15 mg L-1) enhanced the activity of antioxidant enzymes, ascorbate-glutathione (AsA-GSH) system and elevated N and carbohydrates metabolism. Application of nTiO2 also enhanced the accumulation of phytochelatins and activity of the enzymes of glyoxalase system that provided additional protection against the metal and toxic methylglyoxal. Osmotic stress brought on by PEG and Ni, was countered by the increase of proline and carbohydrates levels, which helped the seedlings keep their optimal level of hydration. Application nTiO2 improved the biosynthesis of H2S and K+ retention through regulating Cys biosynthesis and H+-ATPase activity, respectively. Observed outcomes lead to the conclusion that nTiO2 maintains redox homeostasis, and normal functioning of N and carbohydrates metabolism that resulted in the protection of cucumber seedlings against drought and Ni stress. Use of 20 mM tetraethylammonium chloride (K+- channel blocker), 500 μM sodium orthovanadate (PM H+-ATPase inhibitor), and 1 mM hypotaurine (H2S scavenger) demonstrate that endogenous K+ and H2S were crucial for the nTiO2-induced modulation of plants' adaptive responses to the imposed stress.
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Affiliation(s)
- M Nasir Khan
- Department of Biology, College of Haql, University of Tabuk, Tabuk, 71491, Saudi Arabia.
| | - Manzer H Siddiqui
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Khalaf M Alhussaen
- Department of Biology, College of Haql, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - Alaa Rafat El-Alosey
- Department of Biology, College of Haql, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | | | - Hazem M Kalaji
- Department of Plant Physiology, Institute of Biology, Warsaw University of Life Sciences SGGW, 159 Nowoursynowska 159, 02-776, Warsaw, Poland
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7
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Cho G, Kim DR, Kwak YS. Transition from Ginseng Root Rot Disease-Conducive Soil to -Suppressive Soil Mediated by Pseudomonadaceae. Microbiol Spectr 2023; 11:e0115023. [PMID: 37404179 PMCID: PMC10433981 DOI: 10.1128/spectrum.01150-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 06/07/2023] [Indexed: 07/06/2023] Open
Abstract
Ginseng is a popular medicinal herb with established therapeutic effects such as cardiovascular disease prevention, anticancer effects, and anti-inflammatory effects. However, the slow growth of ginseng due to soilborne pathogens has been a challenge for establishing new plantations. In this study, we investigated root rot disease associated with the microbiota in a ginseng monoculture model system. Our results showed that a collapse of the early microbiota community inhibiting root rot disease was observed before the disease became severe, and nitrogen fixation was necessary to support the initial microbiota community structure. Furthermore, changes in the nitrogen composition were essential for the suppression of pathogen activity in early monoculture soils. We hypothesize that Pseudomonadaceae, a population built up by aspartic acid, can inhibit the occurrence of root rot disease in ginseng and that specific management practices that maintain a healthy microbiome can be implemented to prevent and mitigate the disease. Our findings provide insights into the potential use of specific members of the microbiota for controlling root rot disease in ginseng cultivation. IMPORTANCE Understanding the initial soil microbiota and community shifts in a monoculture system is critical for developing disease-suppressive soils for crop production. The lack of resistance genes against soilborne pathogens in plants highlights the need for effective management strategies. Our investigation of root rot disease and initial microbiota community shifts in a ginseng monoculture model system provides valuable insight into the development of conducive soil into specific suppressive soil. With a thorough understanding of the microbiota in disease-conducive soil, we can work toward the development of disease-suppressive soil to prevent outbreaks and ensure sustainable crop production.
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Affiliation(s)
- Gyeongjun Cho
- Division of Agricultural Microbiology, Department of Agricultural Biology, National Institute of Agriculture Science, Rural Development Administration, Wanju, Republic of Korea
| | - Da-Ran Kim
- Division of Applied Life Science and RILS, Gyeongsang National University, Jinju, Republic of Korea
| | - Youn-Sig Kwak
- Division of Applied Life Science and RILS, Gyeongsang National University, Jinju, Republic of Korea
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8
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Youssef WA, Feil R, Saint-Sorny M, Johnson X, Lunn JE, Grimm B, Brzezowski P. Singlet oxygen-induced signalling depends on the metabolic status of the Chlamydomonas reinhardtii cell. Commun Biol 2023; 6:529. [PMID: 37193883 DOI: 10.1038/s42003-023-04872-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 04/24/2023] [Indexed: 05/18/2023] Open
Abstract
Using a mutant screen, we identified trehalose 6-phosphate phosphatase 1 (TSPP1) as a functional enzyme dephosphorylating trehalose 6-phosphate (Tre6P) to trehalose in Chlamydomonas reinhardtii. The tspp1 knock-out results in reprogramming of the cell metabolism via altered transcriptome. As a secondary effect, tspp1 also shows impairment in 1O2-induced chloroplast retrograde signalling. From transcriptomic analysis and metabolite profiling, we conclude that accumulation or deficiency of certain metabolites directly affect 1O2-signalling. 1O2-inducible GLUTATHIONE PEROXIDASE 5 (GPX5) gene expression is suppressed by increased content of fumarate and 2-oxoglutarate, intermediates in the tricarboxylic acid cycle (TCA cycle) in mitochondria and dicarboxylate metabolism in the cytosol, but also myo-inositol, involved in inositol phosphate metabolism and phosphatidylinositol signalling system. Application of another TCA cycle intermediate, aconitate, recovers 1O2-signalling and GPX5 expression in otherwise aconitate-deficient tspp1. Genes encoding known essential components of chloroplast-to-nucleus 1O2-signalling, PSBP2, MBS, and SAK1, show decreased transcript levels in tspp1, which also can be rescued by exogenous application of aconitate. We demonstrate that chloroplast retrograde signalling involving 1O2 depends on mitochondrial and cytosolic processes and that the metabolic status of the cell determines the response to 1O2.
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Affiliation(s)
- Waeil Al Youssef
- Pflanzenphysiologie, Institut für Biologie, Humboldt-Universität zu Berlin, 10115, Berlin, Germany
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Maureen Saint-Sorny
- Photosynthesis and Environment Team, Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), CNRS, Institut de Biosciences et Biotechnologies d'Aix-Marseille, Aix-Marseille Université, UMR 7265, CEA Cadarache, F-13108, Saint-Paul-lez-Durance, France
| | - Xenie Johnson
- Photosynthesis and Environment Team, Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), CNRS, Institut de Biosciences et Biotechnologies d'Aix-Marseille, Aix-Marseille Université, UMR 7265, CEA Cadarache, F-13108, Saint-Paul-lez-Durance, France
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Bernhard Grimm
- Pflanzenphysiologie, Institut für Biologie, Humboldt-Universität zu Berlin, 10115, Berlin, Germany
| | - Pawel Brzezowski
- Pflanzenphysiologie, Institut für Biologie, Humboldt-Universität zu Berlin, 10115, Berlin, Germany.
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9
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Gai Z, Zhang M, Zhang P, Zhang J, Liu J, Cai L, Yang X, Zhang N, Yan Z, Liu L, Feng G. 2-Oxoglutarate contributes to the effect of foliar nitrogen on enhancing drought tolerance during flowering and grain yield of soybean. Sci Rep 2023; 13:7274. [PMID: 37142711 PMCID: PMC10160060 DOI: 10.1038/s41598-023-34403-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Accepted: 04/28/2023] [Indexed: 05/06/2023] Open
Abstract
Drought severely affects the growth and yield of soybean plants especially during the flowering period. To investigate the effect of 2-oxoglutarate (2OG) in combination with foliar nitrogen (N) at flowering stage on drought resistance and seed yield of soybean under drought stress. This experiment was conducted in 2021 and 2022 on drought-resistant variety (Hefeng 50) and drought-sensitive variety (Hefeng 43) soybean plants treated with foliar N (DS + N) and 2-oxoglutarate (DS + 2OG) at flowering stage under drought stress. The results showed that drought stress at flowering stage significantly increased leaf malonaldehyde (MDA) content and reduced soybean yield per plant. However, superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) activities were significantly increased by foliar N treatment, and 2-oxoglutarate synergistically with foliar N treatment (DS + N + 2OG) was more beneficial to plant photosynthesis. 2-oxoglutarate significantly enhanced plant N content, glutamine synthetase (GS) and glutamate synthase (GOGAT) activity. Furthermore, 2-oxoglutarate increased the accumulation of proline and soluble sugars under drought stress. Under drought stress, soybean seed yield was increased by DS + N + 2OG treatment by 16.48-17.10% and 14.96-18.84% in 2021 and 2022, respectively. Thus, the combination of foliar N and 2-oxoglutarate better mitigated the adverse effects of drought stress and could better compensate for the yield loss of soybean under drought stress.
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Affiliation(s)
- Zhijia Gai
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Maoming Zhang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Pengfei Zhang
- Department of Agronomy, Northeast Agricultural University, Harbin, 15000, China
| | - Jingtao Zhang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Jingqi Liu
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Lijun Cai
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Xu Yang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Na Zhang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Breeding and Cultivation of Main Crops in Sanjiang Plain, Jiamusi, 154007, China
| | - Zhengnan Yan
- College of Horticulture, Qingdao Agricultural University, Qingdao, 266109, China
| | - Lei Liu
- College of Resources and Environment, Jilin Agricultural University, Changchun, 130118, China.
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China.
| | - Guozhong Feng
- College of Resources and Environment, Jilin Agricultural University, Changchun, 130118, China.
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Alsherif EA, Almaghrabi O, Elazzazy AM, Abdel-Mawgoud M, Beemster GTS, Sobrinho RL, AbdElgawad H. How Carbon Nanoparticles, Arbuscular Mycorrhiza, and Compost Mitigate Drought Stress in Maize Plant: A Growth and Biochemical Study. PLANTS (BASEL, SWITZERLAND) 2022; 11:3324. [PMID: 36501367 PMCID: PMC9739014 DOI: 10.3390/plants11233324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/15/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Drought negatively affects crop growth and development, so it is crucial to develop practical ways to reduce these consequences of water scarcity. The effect of the interactive potential of compost (Comp), mycorrhizal fungi (AMF), and carbon nanoparticles (CNPS) on plant growth, photosynthesis rate, primary metabolism, and secondary metabolism was studied as a novel approach to mitigating drought stress in maize plants. Drought stress significantly reduced maize growth and photosynthesis and altered metabolism. Here, the combined treatments Com-AMF or Com-AMF-CNPs mitigated drought-induced reductions in fresh and dry weights. The treatments with AMF or CNPS significantly increased photosynthesis (by 10%) in comparison to the control plants. Results show that soluble sugars were accumulated to maintain the osmotic status of the maize plant under drought stress. The level and metabolism of sucrose, an osmo-protectant, were increased in plants treated with Com (by 30%), which was further increased under the triple effect of Com-AMF-CNPs (40%), compared to untreated plants. This was inconsistent with increased sucrose-phosphate synthase and sucrose-P-synthase activity. The combined treatment Com-AMF-CNPs increased the levels of oxalic and succinic acids (by 100%) and has been reflected in the enhanced levels of amino acids such as the antioxidant and omso-protectant proline. Higher increases in fatty acids by treatment with CNPS were also recorded. Com-AMF-CNPs enhanced many of the detected fatty acids such as myristic, palmitic, arachidic, docosanoic, and pentacosanoic (110%, 30%, 100%, and 130%, respectively), compared to untreated plants. At the secondary metabolism level, sugar and amino acids provide a route for polyamine biosynthesis, where Com-AMF-CNPs increased spermine and spermidine synthases, ornithine decarboxylase, and adenosyl methionine decarboxylase in treated maize. Overall, our research revealed for the first time how Cmo, AMF, and/or CNPS alleviated drought stress in maize plants.
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Affiliation(s)
- Emad A. Alsherif
- Department of Biology, College of Science and Arts at Khulis, University of Jeddah, Jeddah 23218, Saudi Arabia
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni Suef 2722165, Egypt
| | - Omar Almaghrabi
- Department of Biology, College of Science, University of Jeddah, Jeddah 23218, Saudi Arabia
| | - Ahmed M. Elazzazy
- Department of Biology, College of Science, University of Jeddah, Jeddah 23218, Saudi Arabia
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Division National Research Centre, Dokki, Giza 12622, Egypt
| | - Mohamed Abdel-Mawgoud
- National Natural Products Research Center, College of Pharmacy, University of Mississippi, Oxford, MS 38655, USA
- Department of Medicinal Plants and Natural Products, Desert Research Center, Cairo 11753, Egypt
| | - Gerrit T. S. Beemster
- Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp, 2000 Antwerp, Belgium
| | - Renato Lustosa Sobrinho
- Department of Agronomy, Federal University of Technology—Paraná (UTFPR), Pato Branco 85503-390, PR, Brazil
| | - Hamada AbdElgawad
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni Suef 2722165, Egypt
- Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp, 2000 Antwerp, Belgium
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11
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Gai Z, Liu J, Cai L, Zhang J, Liu L. Foliar application of alpha-ketoglutarate plus nitrogen improves drought resistance in soybean (Glycine max L. Merr.). Sci Rep 2022; 12:14421. [PMID: 36002532 PMCID: PMC9402593 DOI: 10.1038/s41598-022-18660-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Accepted: 08/17/2022] [Indexed: 11/09/2022] Open
Abstract
The aim of the present research was to understand the impacts of foliar nitrogen and α-oxoglutarate on proline accumulation, photosynthesis, and ammonium assimilation of soybean seedlings subjected to drought stress. The data in the present study demonstrated that foliar α-oxoglutarate and nitrogen significantly enhanced leaf glutamine synthetase (GS) activity, glutamate dehydrogenase (GDH) activity, glutamate content, proline content, relative water content (RWC) and photosynthesis of soybean seedlings exposed to drought stress at each stage. Accordingly, the ammonium content was significantly reduced by foliar α-oxoglutarate and nitrogen. These results suggested that a combination of foliar nitrogen plus α-oxoglutarate had an advantage over either foliar nitrogen or foliar α-oxoglutarate in increasing the proline accumulation under drought stress and a combination of foliar nitrogen plus α-oxoglutarate could better mitigate the adverse impacts of drought stress.
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Affiliation(s)
- Zhijia Gai
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154007, Heilongjiang Province, China
| | - Jingqi Liu
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154007, Heilongjiang Province, China
| | - Lijun Cai
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154007, Heilongjiang Province, China
| | - Jingtao Zhang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Jiamusi, 154007, Heilongjiang Province, China
| | - Lei Liu
- College of Resources and Environment, Jilin Agricultural University, Changchun, 130102, Jilin Province, China. .,Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, Jilin Province, China.
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12
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Rizwan M, Usman K, Alsafran M, Jabri HA, Samreen T, Saleem MH, Tu S. Nickel Toxicity Interferes with NO3−/NH4+ Uptake and Nitrogen Metabolic Enzyme Activity in Rice (Oryza sativa L.). PLANTS 2022; 11:plants11111401. [PMID: 35684174 PMCID: PMC9182924 DOI: 10.3390/plants11111401] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 04/24/2022] [Accepted: 04/27/2022] [Indexed: 11/16/2022]
Abstract
The excessive use of nickel (Ni) in manufacturing and various industries has made Ni a serious pollutant in the past few decades. As a micronutrient, Ni is crucial for plant growth at low concentrations, but at higher concentrations, it can hamper growth. We evaluated the effects of Ni concentrations on nitrate (NO3−) and ammonium (NH4+) concentrations, and nitrogen metabolism enzyme activity in rice seedlings grown in hydroponic systems, using different Ni concentrations. A Ni concentration of 200 μM significantly decreased the NO3− concentration in rice leaves, as well as the activities of nitrate reductase (NR), nitrite reductase (NiR), glutamine synthetase (GS), and glutamate synthetase (GOGAT), respectively, when compared to the control. By contrast, the NH4+ concentration and glutamate dehydrogenase (GDH) activity both increased markedly by 48% and 46%, respectively, compared with the control. Furthermore, the activity of most active aminotransferases, including glutamic pyruvic transaminase (GPT) and glutamic oxaloacetic transaminase (GOT), was inhibited by 48% and 36%, respectively, in comparison with the control. The results indicate that Ni toxicity causes the enzymes involved in N assimilation to desynchronize, ultimately negatively impacting the overall plant growth.
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Affiliation(s)
- Muhammad Rizwan
- Office of Academic Research, Office of VP for Research & Graduate Studies, Qatar University, Doha 2713, Qatar; (M.R.); (M.H.S.)
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Kamal Usman
- Agricultural Research Station (ARS), Office of VP for Research and Graduate Studies, Qatar University, Doha 2713, Qatar;
| | - Mohammed Alsafran
- Agricultural Research Station (ARS), Office of VP for Research and Graduate Studies, Qatar University, Doha 2713, Qatar;
- Central Laboratories Unit (CLU), Office of VP for Research and Graduate Studies, Qatar University, Doha 2713, Qatar
- Correspondence: (M.A.); (S.T.)
| | - Hareb Al Jabri
- Center for Sustainable Development, College of Arts and Sciences, Qatar University, Doha 2713, Qatar;
- Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha 2713, Qatar
| | - Tayyaba Samreen
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad 38040, Pakistan;
| | - Muhammad Hamzah Saleem
- Office of Academic Research, Office of VP for Research & Graduate Studies, Qatar University, Doha 2713, Qatar; (M.R.); (M.H.S.)
| | - Shuxin Tu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Correspondence: (M.A.); (S.T.)
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13
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Kominami S, Mizuta H, Uji T. Transcriptome Profiling in the Marine Red Alga Neopyropia yezoensis Under Light/Dark Cycle. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2022; 24:393-407. [PMID: 35377066 DOI: 10.1007/s10126-022-10121-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 03/23/2022] [Indexed: 06/14/2023]
Abstract
Many organisms are subjected to a daily cycle of light and darkness, which significantly influences metabolic and physiological processes. In the present study, Neopyropia yezoensis, one of the major cultivated seaweeds used in "nori," was harvested in the morning and evening during light/dark treatments to investigate daily changes in gene expression using RNA-sequencing. A high abundance of transcripts in the morning includes the genes associated with carbon-nitrogen assimilations, polyunsaturated fatty acid, and starch synthesis. In contrast, the upregulation of a subset of the genes associated with the pentose phosphate pathway, cell cycle, and DNA replication at evening is necessary for the tight control of light-sensitive processes, such as DNA replication. Additionally, a high abundance of transcripts at dusk encoding asparaginase and glutamate dehydrogenase imply that regulation of asparagine catabolism and tricarboxylic acid cycle possibly contributes to supply nitrogen and carbon, respectively, for growth during the dark. In addition, genes encoding cryptochrome/photolyase family and histone modification proteins were identified as potential key players for regulating diurnal rhythmic genes.
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Affiliation(s)
- Sayaka Kominami
- Laboratory of Aquaculture Genetics and Genomics, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, 041-8611, Japan
| | - Hiroyuki Mizuta
- Laboratory of Aquaculture Genetics and Genomics, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, 041-8611, Japan
| | - Toshiki Uji
- Laboratory of Aquaculture Genetics and Genomics, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, 041-8611, Japan.
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14
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Hu Y, Guy RD, Soolanayakanahally RY. Genotypic variation in C and N isotope discrimination suggests local adaptation of heart-leaved willow. TREE PHYSIOLOGY 2022; 42:32-43. [PMID: 33517390 DOI: 10.1093/treephys/tpab010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Accepted: 01/18/2021] [Indexed: 06/12/2023]
Abstract
Plants acquire multiple resources from the environment and may need to adjust and/or balance their respective resource-use efficiencies to maximize grow and survival, in a locally adaptive manner. In this study, tissue and whole-plant carbon (C) isotopic composition (δ13C) and carbon/nitrogen (C/N) ratios provided long-term measures of use efficiencies for water (WUE) and nitrogen (NUE), and a nitrogen (N) isotopic composition (δ15N)-based mass balance model was used to estimate traits related to N uptake and assimilation in heart-leaved willow (Salix eriocephala Michx.). In an initial common garden experiment consisting of 34 populations, we found population-level variation in δ13C, C/N ratio and δ15N, indicating different patterns in WUE, NUE and N uptake and assimilation. Although there was no relationship between foliar δ13C and C/N ratios among populations, there was a significant negative correlation between these measures across all individuals, implying a genetic and/or plastic trade-off between WUE and NUE not associated with local adaptation. To eliminate any environmental effect, we grew a subset of 21 genotypes hydroponically with nitrate as the sole N source and detected significant variation in δ13C, δ15N and C/N ratios. Variation in δ15N was mainly due to genotypic differences in the nitrate efflux/influx ratio (E/I) at the root. Both experiments suggested clinal variation in δ15N (and thus N uptake efficiency) with latitude of origin, which may relate to water availability and could contribute to global patterns in ecosystem δ15N. There was a tendency for genotypes with higher WUE to come from more water-replete sites with shorter and cooler growing seasons. We found that δ13C, C/N ratio and E/I were not inter-correlated, suggesting that the selection of growth, WUE, NUE and N uptake efficiency can occur without trade-off.
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Affiliation(s)
- Yi Hu
- Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Forest Sciences Centre, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Robert D Guy
- Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Forest Sciences Centre, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
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15
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Xi M, Wu W, Xu Y, Zhou Y, Chen G, Ji Y, Sun X. Grain chalkiness traits is affected by the synthesis and dynamic accumulation of the storage protein in rice. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:6125-6133. [PMID: 33905122 DOI: 10.1002/jsfa.11269] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 03/28/2021] [Accepted: 04/27/2021] [Indexed: 05/02/2023]
Abstract
BACKGROUOND Grain chalkiness lowers the market value of rice. Alleviating grain chalkiness is the most challenging issue in many rice-producing areas of the world. Nitrogen (N) metabolism has received increasing attention as a result of its relationship with grain chalkiness, although little information is available on the mechanism of N-induced grain chalk. RESULTS A highly chalky rice variety OM052 was used to explore the protein synthesis and its accumulation in the grain exposed to N topdressing (N+) at the panicle initiation stage and a control (N-). The results showed that chalky kernels were stimulated by the N+ treatment and more prone to occur on the top and primary rachis. The grain protein content was increased because of the increased average and maximum rates of protein accumulation during grain filling, which was related to the enhanced activities of glutamine synthetase, glutamate synthase, glutamic oxalo-acetic transaminase and glutamate pyruvate transaminase under the N+ treatment. The activities of these enzymes at 15 days after flowering (DAF) were notably positively correlated with grain chalky traits and protein content. CONCLUSION N topdressing regulates the synthesis and accumulation of the protein by affecting the key enzymes, especially at 15 DAF, which is attributed to grain chalkiness in rice. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Min Xi
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Wenge Wu
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Youzun Xu
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Yongjin Zhou
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Gang Chen
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Yalan Ji
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Xueyuan Sun
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
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16
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Wang X, Wang K, Yin T, Zhao Y, Liu W, Shen Y, Ding Y, Tang S. Nitrogen Fertilizer Regulated Grain Storage Protein Synthesis and Reduced Chalkiness of Rice Under Actual Field Warming. FRONTIERS IN PLANT SCIENCE 2021; 12:715436. [PMID: 34527011 PMCID: PMC8435852 DOI: 10.3389/fpls.2021.715436] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 08/05/2021] [Indexed: 06/02/2023]
Abstract
Our previous study has shown that nitrogen plays an important role in dealing with significantly increased chalkiness caused by elevated temperature. However, the role of nitrogen metabolites has not been given sufficient attention, and its regulatory mechanism is not clear. This study investigated the effects of high temperature and nitrogen fertilizer on the synthesis of grain storage protein and further explored the quality mechanism under the actual scenario of field warming. Results showed that increased temperature and nitrogen fertilizer could affect the activities of nitrogen metabolism enzymes, namely, glutamate synthetase, glutamine synthetase, glutamic pyruvic transaminase, and glutamic oxaloacetic transaminase, and the expressions of storage protein synthesis factor genes, namely, GluA and GluB, and subfamily genes, namely, pro14, BiP1, and PDIL1, which co-induced the changes of storage protein synthesis in rice grains. Furthermore, the increased temperature changed the balance of grain storage substances which may lead to the significantly increased chalky rate (197.67%) and chalkiness (532.92%). Moreover, there was a significant negative correlation between prolamin content and chalkiness, indicating that nitrogen fertilizer might regulate the formation of chalkiness by affecting the synthesis of prolamin. Results suggested that nitrogen application could regulate the related core factors involved in nitrogen metabolism pathways, which, in turn, affects the changes in the storage protein components in the grain and further affects quality. Therefore, as a conventional cultivation measure, nitrogen application would have a certain value in future rice production in response to climate warming.
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Affiliation(s)
- Xueqin Wang
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Kailu Wang
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Tongyang Yin
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Yufei Zhao
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Wenzhe Liu
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Yingying Shen
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
| | - Yanfeng Ding
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, China
| | - She Tang
- College of Agronomy, Nanjing Agricultural University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, China
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17
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Liang T, Yuan Z, Fu L, Zhu M, Luo X, Xu W, Yuan H, Zhu R, Hu Z, Wu X. Integrative Transcriptomic and Proteomic Analysis Reveals an Alternative Molecular Network of Glutamine Synthetase 2 Corresponding to Nitrogen Deficiency in Rice ( Oryza sativa L.). Int J Mol Sci 2021; 22:ijms22147674. [PMID: 34299294 PMCID: PMC8304609 DOI: 10.3390/ijms22147674] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 07/10/2021] [Accepted: 07/15/2021] [Indexed: 01/21/2023] Open
Abstract
Nitrogen (N) is an essential nutrient for plant growth and development. The root system architecture is a highly regulated morphological system, which is sensitive to the availability of nutrients, such as N. Phenotypic characterization of roots from LY9348 (a rice variety with high nitrogen use efficiency (NUE)) treated with 0.725 mM NH4NO3 (1/4N) was remarkable, especially primary root (PR) elongation, which was the highest. A comprehensive analysis was performed for transcriptome and proteome profiling of LY9348 roots between 1/4N and 2.9 mM NH4NO3 (1N) treatments. The results indicated 3908 differential expression genes (DEGs; 2569 upregulated and 1339 downregulated) and 411 differential abundance proteins (DAPs; 192 upregulated and 219 downregulated). Among all DAPs in the proteome, glutamine synthetase (GS2), a chloroplastic ammonium assimilation protein, was the most upregulated protein identified. The unexpected concentration of GS2 from the shoot to the root in the 1/4N treatment indicated that the presence of an alternative pathway of N assimilation regulated by GS2 in LY9348 corresponded to the low N signal, which was supported by GS enzyme activity and glutamine/glutamate (Gln/Glu) contents analysis. In addition, N transporters (NRT2.1, NRT2.2, NRT2.3, NRT2.4, NAR2.1, AMT1.3, AMT1.2, and putative AMT3.3) and N assimilators (NR2, GS1;1, GS1;2, GS1;3, NADH-GOGAT2, and AS2) were significantly induced during the long-term N-deficiency response at the transcription level (14 days). Moreover, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis demonstrated that phenylpropanoid biosynthesis and glutathione metabolism were significantly modulated by N deficiency. Notably, many transcription factors and plant hormones were found to participate in root morphological adaptation. In conclusion, our study provides valuable information to further understand the response of rice roots to N-deficiency stress.
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Affiliation(s)
- Ting Liang
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Zhengqing Yuan
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Lu Fu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Menghan Zhu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Xiaoyun Luo
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Wuwu Xu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Huanran Yuan
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Renshan Zhu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Zhongli Hu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Xianting Wu
- State Key Laboratory of Hybrid Rice, Wuhan University, Wuhan 430072, China; (T.L.); (Z.Y.); (L.F.); (M.Z.); (X.L.); (W.X.); (H.Y.); (R.Z.); (Z.H.)
- College of Life Sciences, Wuhan University, Wuhan 430072, China
- Crop Research Institute, Sichuan Academy of Agricultural Science, Chengdu 610000, China
- Correspondence: ; Tel.: +86-181-8061-4938
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18
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AbdElgawad H, Hassan YM, Alotaibi MO, Mohammed AE, Saleh AM. C3 and C4 plant systems respond differently to the concurrent challenges of mercuric oxide nanoparticles and future climate CO 2. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:142356. [PMID: 33370918 DOI: 10.1016/j.scitotenv.2020.142356] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 09/06/2020] [Accepted: 09/10/2020] [Indexed: 06/12/2023]
Abstract
Future climate CO2 (eCO2) and contamination with nano-sized heavy metals (HM-NPs) represent concurrent challenges threatening plants. The interaction between eCO2 and HM-NPs is rarely investigated, and no study has addressed their synchronous impact on the metabolism of the multifunctional stress-related metabolites, such as sugars and amino acids. Moreover, the characteristic responses of C3 and C4 plant systems to the concurrent impact of eCO2 and HM-NPs are poorly understood. Herein, we have assessed the impact of eCO2 (620 ppm) and/or HgO-NPs (100 mg/Kg soil) on growth, physiology and metabolism of sugars and amino acids, particularly proline, in C3 (wheat) and C4 (maize) plant systems. Under Hg-free conditions, eCO2 treatment markedly improved the growth and photosynthesis and induced sugars levels and metabolism (glucose, fructose, sucrose, starch, sucrose P synthase and starch synthase) in wheat (C3) only. In contrast, HgO-NPs induced the uptake, accumulation and translocation of Hg in wheat and to less extend in maize plants. Particularly in wheat, this induced significant decreases in growth and photosynthesis and increases in photorespiration, dark respiration and levels of tricarboxylic acid cycle organic acids. Interestingly, the co-application of eCO2 reduced the accumulation of Hg and recovered the HgO-NPs-induced effects on growth and metabolism in both plants. At stress defense level, HgO-NPs induced the accumulation of sucrose and proline, more in maize, via upregulation of sucrose P synthase, ornithine amino transferase, ∆1-pyrroline-5-carboxylate (P5C) synthetase and P5C reductase. The co-existence of eCO2 favored reduced sucrose biosynthesis and induced proline catabolism, which provide high energy to resume plant growth. Overall, despite the difference in their response to eCO2 under normal conditions, eCO2 induced similar metabolic events in C3 and C4 plants under stressful conditions, which trigger stress recovery.
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Affiliation(s)
- Hamada AbdElgawad
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, 62521 Beni-Suef, Egypt
| | - Yasser M Hassan
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, 62521 Beni-Suef, Egypt
| | - Modhi O Alotaibi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.
| | - Afrah E Mohammed
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Ahmed M Saleh
- Department of Botany and Microbiology, Faculty of Science, Cairo University, Giza 12613, Egypt; Biology Department, Faculty of Science at Yanbu, Taibah University, King Khalid Rd., Al Amoedi, 46423 Yanbu El-Bahr, Saudi Arabia.
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Brewitz L, Nakashima Y, Schofield CJ. Synthesis of 2-oxoglutarate derivatives and their evaluation as cosubstrates and inhibitors of human aspartate/asparagine-β-hydroxylase. Chem Sci 2020; 12:1327-1342. [PMID: 34163896 PMCID: PMC8179049 DOI: 10.1039/d0sc04301j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 11/26/2020] [Indexed: 02/06/2023] Open
Abstract
2-Oxoglutarate (2OG) is involved in biological processes including oxidations catalyzed by 2OG oxygenases for which it is a cosubstrate. Eukaryotic 2OG oxygenases have roles in collagen biosynthesis, lipid metabolism, DNA/RNA modification, transcriptional regulation, and the hypoxic response. Aspartate/asparagine-β-hydroxylase (AspH) is a human 2OG oxygenase catalyzing post-translational hydroxylation of Asp/Asn-residues in epidermal growth factor-like domains (EGFDs) in the endoplasmic reticulum. AspH is of chemical interest, because its Fe(ii) cofactor is complexed by two rather than the typical three residues. AspH is upregulated in hypoxia and is a prognostic marker on the surface of cancer cells. We describe studies on how derivatives of its natural 2OG cosubstrate modulate AspH activity. An efficient synthesis of C3- and/or C4-substituted 2OG derivatives, proceeding via cyanosulfur ylid intermediates, is reported. Mass spectrometry-based AspH assays with >30 2OG derivatives reveal that some efficiently inhibit AspH via competing with 2OG as evidenced by crystallographic and solution analyses. Other 2OG derivatives can substitute for 2OG enabling substrate hydroxylation. The results show that subtle changes, e.g. methyl- to ethyl-substitution, can significantly alter the balance between catalysis and inhibition. 3-Methyl-2OG, a natural product present in human nutrition, was the most efficient alternative cosubstrate identified; crystallographic analyses reveal the binding mode of (R)-3-methyl-2OG and other 2OG derivatives to AspH and inform on the balance between turnover and inhibition. The results will enable the use of 2OG derivatives as mechanistic probes for other 2OG utilizing enzymes and suggest 2-oxoacids other than 2OG may be employed by some 2OG oxygenases in vivo.
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Affiliation(s)
- Lennart Brewitz
- Chemistry Research Laboratory, University of Oxford 12 Mansfield Road OX1 3TA Oxford UK
| | - Yu Nakashima
- Chemistry Research Laboratory, University of Oxford 12 Mansfield Road OX1 3TA Oxford UK
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20
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Gai Z, Liu L, Zhang J, Liu J, Cai L. Effects of exogenous α-oxoglutarate on proline accumulation, ammonium assimilation and photosynthesis of soybean seedling (Glycine max(L.) Merr.) exposed to cold stress. Sci Rep 2020; 10:17017. [PMID: 33046814 PMCID: PMC7550343 DOI: 10.1038/s41598-020-74094-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 09/18/2020] [Indexed: 11/16/2022] Open
Abstract
The objective of this study was to examine the effects of exogenous α-oxoglutarate on leaf proline accumulation, ammonium assimilation and photosynthesis of soybean when exposed to cold stress. To achieve this objective, exogenous α-oxoglutarate was sprayed to potted seedlings of Henong60 and Heinong48 at 0, 2.5, 5.0 and 7.5 mmol/L, identified as A0, A2.5, A5.0, and A7.5, respectively. Leaf samples were collected after cold stress of 24 h (S1 stage) and 48 h (S2 stage). The results indicated that exogenous α-oxoglutarate significantly enhanced leaf GS activity, NADP-GDH activity, glutamate content, proline content and photosynthesis of soybean seedling exposed to cold stress at S1 and S2 stages. The ammonium content in leaf was significantly decreased by exogenous α-oxoglutarate at both stages. 5.0 mmol/L of exogenous α-oxoglutarate is the optimum concentration in this study. Leaf proline content for Henong60 and Heinong48 at A5.0 was 37.53% and 17.96% higher than that at A0 at S1 stage, respectively. Proline content for Henong60 and Heinong48 increased by 28.82% and 12.41% at A5.0 and A0, respectively, at S2 stage. Those results suggested that exogenous α-oxoglutarate could alleviate the adverse effects of cold stress.
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Affiliation(s)
- Zhijia Gai
- Heilongjiang Academy of Agricultural Sciences Postdoctoral Programme, Xuefu Road 368, Harbin City, 150086, Heilongjiang Province, China
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Anqing Street 531, Dongfeng District, Jiamusi City, 154007, Heilongjiang Province, China
| | - Lei Liu
- College of Agronomy, Northeast Agricultural University, Changjiang Road 600, Harbin City, 150038, Heilongjiang Province, China
| | - Jingtao Zhang
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Anqing Street 531, Dongfeng District, Jiamusi City, 154007, Heilongjiang Province, China.
| | - Jingqi Liu
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Anqing Street 531, Dongfeng District, Jiamusi City, 154007, Heilongjiang Province, China
| | - Lijun Cai
- Jiamusi Branch, Heilongjiang Academy of Agricultural Sciences, Anqing Street 531, Dongfeng District, Jiamusi City, 154007, Heilongjiang Province, China
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21
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Light-Independent Nitrogen Assimilation in Plant Leaves: Nitrate Incorporation into Glutamine, Glutamate, Aspartate, and Asparagine Traced by 15N. PLANTS 2020; 9:plants9101303. [PMID: 33023108 PMCID: PMC7600499 DOI: 10.3390/plants9101303] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 09/22/2020] [Accepted: 09/29/2020] [Indexed: 01/26/2023]
Abstract
Although the nitrate assimilation into amino acids in photosynthetic leaf tissues is active under the light, the studies during 1950s and 1970s in the dark nitrate assimilation provided fragmental and variable activities, and the mechanism of reductant supply to nitrate assimilation in darkness remained unclear. 15N tracing experiments unraveled the assimilatory mechanism of nitrogen from nitrate into amino acids in the light and in darkness by the reactions of nitrate and nitrite reductases, glutamine synthetase, glutamate synthase, aspartate aminotransferase, and asparagine synthetase. Nitrogen assimilation in illuminated leaves and non-photosynthetic roots occurs either in the redundant way or in the specific manner regarding the isoforms of nitrogen assimilatory enzymes in their cellular compartments. The electron supplying systems necessary to the enzymatic reactions share in part a similar electron donor system at the expense of carbohydrates in both leaves and roots, but also distinct reducing systems regarding the reactions of Fd-nitrite reductase and Fd-glutamate synthase in the photosynthetic and non-photosynthetic organs.
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22
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Hanik N, Best M, Schueller MJ, Tappero R, Ferrieri RA. Defense Priming in Nicotiana tabacum Accelerates and Amplifies 'New' C/N Fluxes in Key Amino Acid Biosynthetic Pathways. PLANTS (BASEL, SWITZERLAND) 2020; 9:E851. [PMID: 32640641 PMCID: PMC7411752 DOI: 10.3390/plants9070851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 06/17/2020] [Accepted: 07/02/2020] [Indexed: 11/16/2022]
Abstract
In the struggle to survive herbivory by leaf-feeding insects, plants employ multiple strategies to defend themselves. One mechanism by which plants increase resistance is by intensifying their responsiveness in the production of certain defense agents to create a rapid response. Known as defense priming, this action can accelerate and amplify responses of metabolic pathways, providing plants with long-lasting resistance, especially when faced with waves of attack. In the work presented, short-lived radiotracers of carbon administered as 11CO2 and nitrogen administered as 13NH3 were applied in Nicotiana tabacum, to examine the temporal changes in 'new' C/N utilization in the biosynthesis of key amino acids (AAs). Responses were induced by using topical application of the defense hormone jasmonic acid (JA). After a single treatment, metabolic partitioning of recently fixed carbon (designated 'new' carbon and reflected as 11C) increased through the shikimate pathway, giving rise to tyrosine, phenylalanine and tryptophan. Amplification in 'new' carbon fluxes preceded changes in the endogenous (12C) pools of these AAs. Testing after serial JA treatments revealed that fluxes of 'new' carbon were accelerated, amplified and sustained over time at this higher rate, suggesting a priming effect. Similar results were observed with recently assimilated nitrogen (designated 'new' nitrogen reflected as 13N) with its partitioning into serine, glycine and glutamine, which play important roles supporting the shikimate pathway and downstream secondary metabolism. Finally, X-ray fluorescence imaging revealed that levels of the element Mn, an important co-factor for enzyme regulation in the shikimate pathway, increased within JA treated tissues, suggesting a link between plant metal ion regulation and C/N metabolic priming.
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Affiliation(s)
- Nils Hanik
- Fachbereich Chemie, Johannes Gutenberg Universität, 55099 Mainz, Germany; (N.H.); (M.B.)
| | - Marcel Best
- Fachbereich Chemie, Johannes Gutenberg Universität, 55099 Mainz, Germany; (N.H.); (M.B.)
| | - Michael J. Schueller
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA;
- Chemistry Department, University of Missouri, Columbia, MO 65211, USA
| | - Ryan Tappero
- Brookhaven National Laboratory, National Synchrotron Light Source Division, Upton, NY 11973, USA;
| | - Richard A. Ferrieri
- Missouri Research Reactor Center, University of Missouri, Columbia, MO 65211, USA;
- Chemistry Department, University of Missouri, Columbia, MO 65211, USA
- Division of Plant Sciences, Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
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23
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Kusano M, Fukushima A, Tabuchi-Kobayashi M, Funayama K, Kojima S, Maruyama K, Yamamoto YY, Nishizawa T, Kobayashi M, Wakazaki M, Sato M, Toyooka K, Osanai-Kondo K, Utsumi Y, Seki M, Fukai C, Saito K, Yamaya T. Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots. PLANT PHYSIOLOGY 2020; 182:1894-1909. [PMID: 32024696 PMCID: PMC7140926 DOI: 10.1104/pp.19.01118] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/09/2020] [Indexed: 05/31/2023]
Abstract
Nitrogen (N) is an essential macronutrient, and the final form of endogenous inorganic N is ammonium, which is assimilated by Gln synthetase (GS) into Gln. However, how the multiple isoforms of cytosolic GSs contribute to metabolic systems via the regulation of ammonium assimilation remains unclear. In this study, we compared the effects of two rice (Oryza sativa) cytosolic GSs, namely OsGS1;1 and OsGS1;2, on central metabolism in roots using reverse genetics, metabolomic and transcriptomic profiling, and network analyses. We observed (1) abnormal sugar and organic N accumulation and (2) significant up-regulation of genes associated with photosynthesis and chlorophyll biosynthesis in the roots of Osgs1;1 but not Osgs1;2 knockout mutants. Network analysis of the Osgs1;1 mutant suggested that metabolism of Gln was coordinated with the metabolic modules of sugar metabolism, tricarboxylic acid cycle, and carbon fixation. Transcript profiling of Osgs1;1 mutant roots revealed that expression of the rice sigma-factor (OsSIG) genes in the mutants were transiently upregulated. GOLDEN2-LIKE transcription factor-encoding genes, which are involved in chloroplast biogenesis in rice, could not compensate for the lack of OsSIGs in the Osgs1;1 mutant. Microscopic analysis revealed mature chloroplast development in Osgs1;1 roots but not in the roots of Osgs1;2, Osgs1;2-complemented lines, or the wild type. Thus, organic N assimilated by OsGS1;1 affects a broad range of metabolites and transcripts involved in maintaining metabolic homeostasis and plastid development in rice roots, whereas OsGS1;2 has a more specific role, affecting mainly amino acid homeostasis but not carbon metabolism.
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Affiliation(s)
- Miyako Kusano
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Atsushi Fukushima
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | | | - Kazuhiro Funayama
- Graduate School of Agricultural Science, Tohoku University, Sendai 981-0845, Japan
| | - Soichi Kojima
- Graduate School of Agricultural Science, Tohoku University, Sendai 981-0845, Japan
| | - Kyonoshin Maruyama
- Biological Resources and Post-Harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba 305-8686, Japan
| | - Yoshiharu Y Yamamoto
- The United Graduate School of Agricultural Science, Gifu University, Gifu 501-1193, Japan
| | - Tomoko Nishizawa
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Makoto Kobayashi
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Mayumi Wakazaki
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Mayuko Sato
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Kiminori Toyooka
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Kumiko Osanai-Kondo
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Yoshinori Utsumi
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Motoaki Seki
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
| | - Chihaya Fukai
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan
- Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 260-8675, Japan
| | - Tomoyuki Yamaya
- Graduate School of Agricultural Science, Tohoku University, Sendai 981-0845, Japan
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Bulgari R, Cocetta G, Trivellini A, Ferrante A. Borage extracts affect wild rocket quality and influence nitrate and carbon metabolism. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020; 26:649-660. [PMID: 32255929 PMCID: PMC7113362 DOI: 10.1007/s12298-020-00783-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 01/07/2020] [Accepted: 02/21/2020] [Indexed: 06/11/2023]
Abstract
Market is increasingly demanding vegetables with high quality and nutraceutical characteristics. It was demonstrated that leafy vegetables can get benefit from biostimulants, for the reduction of nitrate concentration and the increment of antioxidants, with potential benefit for human health. The research purpose was to investigate on the role of a novel plant-based biostimulant in affecting nitrogen and carbon metabolism in wild rocket (Diplotaxis tenuifolia L.). Foliar spray treatments were performed with extracts obtained from borage (Borago officinalis L.) leaves and flowers. To evaluate the treatments effect, in vivo determinations (chlorophyll a fluorescence and chlorophyll content) were performed. At harvest, nitrate concentration, sucrose, total sugars, chlorophyll, and carotenoids levels were measured in leaves. In order to characterize the mechanism of action also at molecular level, a set of genes encoding for some of the key enzymes implicated in nitrate and carbon metabolism was selected and their expression was measured by qRT-PCR. Interesting results concerned the increment of sucrose, coherent with a high value of Fv/Fm, in addition to a significant reduction of nitrate and ABA than control, and an enhanced NR in vivo activity. Also, genes expression was influenced by extracts, with a more pronounced effect on N related genes.
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Affiliation(s)
- Roberta Bulgari
- Department of Agricultural and Environmental Sciences, Università degli Studi di Milano, Via Celoria 2, Milan, Italy
| | - Giacomo Cocetta
- Department of Agricultural and Environmental Sciences, Università degli Studi di Milano, Via Celoria 2, Milan, Italy
| | - Alice Trivellini
- Institute of Life Science, Scuola Superiore Sant’Anna Pisa, Pz Martiri della Libertà 33, Pisa, Italy
| | - Antonio Ferrante
- Department of Agricultural and Environmental Sciences, Università degli Studi di Milano, Via Celoria 2, Milan, Italy
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25
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Volkova PY, Clement G, Makarenko ES, Kazakova EA, Bitarishvili SV, Lychenkova MA. Metabolic Profiling of γ-Irradiated Barley Plants Identifies Reallocation of Nitrogen Metabolism and Metabolic Stress Response. Dose Response 2020; 18:1559325820914186. [PMID: 32273833 PMCID: PMC7113487 DOI: 10.1177/1559325820914186] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 01/29/2020] [Accepted: 02/18/2020] [Indexed: 11/30/2022] Open
Abstract
The favorable responses of crop species to low-dose γ irradiation can help to
develop cultivars with increased productivity and improved stress tolerance. In
the present study, we tried to reveal the candidate metabolites involved in
growth stimulation of barley seedlings after applying low-dose γ-radiation
(60Co) to seeds. Stimulating doses (5-20 Gy) provided a
significant increase in shoot length and biomass, while relatively high dose of
100 Gy led to significant inhibition of growth. Gas chromatography–mass
spectrometry metabolomic analysis uncovered several compounds that may take part
in radiation hormesis establishment in irradiated plants. This includes
molecules involved in nitrogen redistribution (arginine, glutamine, asparagine,
and γ-aminobutyric acid) and stress-responsive metabolites, such as ascorbate,
myo-inositol and its derivates, and free amino acids
(l-serine, β-alanine, pipecolate, and GABA). These results
contribute to the understanding of the molecular mechanisms of hormesis
phenomenon.
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Affiliation(s)
- Polina Yu Volkova
- Russian Institute of Radiology and Agroecology, Obninsk, Russian Federation
| | - G Clement
- Institut Jean-Pierre Bourgin, INRA, Versailles, France
| | - E S Makarenko
- Russian Institute of Radiology and Agroecology, Obninsk, Russian Federation
| | - E A Kazakova
- Russian Institute of Radiology and Agroecology, Obninsk, Russian Federation
| | - S V Bitarishvili
- Russian Institute of Radiology and Agroecology, Obninsk, Russian Federation
| | - M A Lychenkova
- Russian Institute of Radiology and Agroecology, Obninsk, Russian Federation
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26
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Pan Y, Hu F, Yu C, Li C, Huang T, Hu H. Amino Acid Catabolism During Nitrogen Limitation in Phaeodactylum tricornutum. FRONTIERS IN PLANT SCIENCE 2020; 11:589026. [PMID: 33408729 PMCID: PMC7780933 DOI: 10.3389/fpls.2020.589026] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 11/23/2020] [Indexed: 05/08/2023]
Abstract
Diatoms can accumulate high levels of triacylglycerols (TAGs) under nitrogen depletion and have attracted increasing attention as a potential system for biofuel production. In Phaeodactylum tricornutum, a model diatom, about 40% of lipid is synthesized from the breakdown of cellular components under nitrogen starvation. Our previous studies indicated that carbon skeletons from enhanced branched-chain amino acid (BCAA) degradation under nitrogen deficiency contribute to TAG biosynthesis in P. tricornutum. In this review, we outlined the catabolic pathways of all 20 amino acids based on the genome, transcriptome, proteome, and metabolome data. The contribution of these amino acid catabolic pathways to TAG accumulation was also analyzed.
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Affiliation(s)
- Yufang Pan
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Fan Hu
- School of Foreign Languages, China University of Geosciences, Wuhan, China
| | - Chen Yu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chenjie Li
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Teng Huang
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hanhua Hu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
- *Correspondence: Hanhua Hu,
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27
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Ullah A, Li M, Noor J, Tariq A, Liu Y, Shi L. Effects of salinity on photosynthetic traits, ion homeostasis and nitrogen metabolism in wild and cultivated soybean. PeerJ 2019; 7:e8191. [PMID: 31844583 PMCID: PMC6907091 DOI: 10.7717/peerj.8191] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Accepted: 11/11/2019] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Carbon and nitrogen metabolism need to be highly regulated to achieve cell acclimation to changing environmental conditions. The understanding of physio-biochemical responses of crops to salinity stress could help to stabilize their performance and yield. In this study we have analyzed the roles of photosynthesis, ion physiology and nitrate assimilation toward saline/alkaline stress acclimation in wild and cultivated soybean seedlings. METHODS Growth and photosynthetic parameters, ion concentrations and the activity of enzymes involved in nitrogen assimilation were determined in seedlings of one wild and one cultivated soybean accession subjected to saline or alkaline stresses. RESULTS Both saline and alkaline stresses had a negative impact on the growth and metabolism of both wild and cultivated soybean.The growth, photosynthesis, and gas exchange parameters showed a significant decrease in response to increasing salt concentration. Additionally, a significant increase in root Na+ and Cl- concentration was observed. However, photosynthetic performance and ion regulation were higher in wild than in cultivated soybean under saline and alkaline stresses. Nitrate reductase (NR) and the glutamine synthetase/glutamate synthase (GS/GOGAT) cycle showed a significant decrease in leaves of both genotypes. The reduction in the GS/GOGAT cycle was accompanied by high aminating glutamate dehydrogenase (NADH-glutamate dehydrogenase) activity, indicating the assimilation of high levels of NH4 +. A significant increase in the activities of aminating and deaminating enzymes, including glutamate dehydrogenase (GDH), alanine aminotransferase (AlaAT) and aspartate aminotransferase (AspAT), was observed, probably due to the high glutamate demand and maintenance of the Krebs cycle to correct the C: N status. CONCLUSIONS Cultivated soybean was much more stress sensitive than was the wild soybean. The decrease in growth, photosynthesis, ion regulation and nitrogen assimilation enzymes was greater in cultivated soybean than in wild soybean. The impact of alkaline stress was more pronounced than that of saline stress. Wild soybean regulated the physiological mechanisms of photosynthesis and nitrate assimilation more effectively than did cultivated soybean. The present findings provide a theoretical basis with which to screen and utilize wild and cultivated soybean germplasm for breeding new stress-tolerant soybean.
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Affiliation(s)
- Abd Ullah
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
| | - Mingxia Li
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
| | - Javaria Noor
- Department of Botany, Islamia College University, Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Akash Tariq
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, Xinjiang, China
- Key Laboratory of Biogeography and Bioresource in Arid Zone, Chinese Academy of Sciences, Urumqi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yuan Liu
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
| | - Lianxuan Shi
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
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28
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Gasparini K, Costa LC, Brito FAL, Pimenta TM, Cardoso FB, Araújo WL, Zsögön A, Ribeiro DM. Elevated CO 2 induces age-dependent restoration of growth and metabolism in gibberellin-deficient plants. PLANTA 2019; 250:1147-1161. [PMID: 31175419 DOI: 10.1007/s00425-019-03208-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 06/03/2019] [Indexed: 06/09/2023]
Abstract
The effect of elevated [CO2] on the growth of tomato plants with reduced gibberellin content is influenced by developmental stage. The impact of increased atmospheric carbon dioxide (CO2) on plants has aroused interest in the last decades. Signaling molecules known as plant hormones are fundamental controllers of plant growth and development. Elevated CO2 concentration ([CO2]) increases plant growth; however, whether plant hormones act as mediators of this effect is still an open question. Here, we show the response to elevated [CO2] in tomato does not require a functional gibberellin (GA) biosynthesis pathway. We compared growth and primary metabolism between wild-type (WT) and GA-deficient mutant (gib-1) plants transferred from ambient (400 ppm) to elevated (750 ppm) [CO2] at two different growth stages (either 21 or 35 days after germination, DAG). Growth, photosynthetic parameters and primary metabolism in the stunted gib-1 plants were restored when they were transferred to elevated [CO2] at 21 DAG. Elevated [CO2] also stimulated growth and photosynthetic parameters in WT plants at 21 DAG; however, only minor changes were observed in the level of primary metabolites. At 35 DAG, on the other hand, elevated [CO2] did not stimulate growth in WT plants and gib-1 mutants showed their characteristic stunted growth phenotype. Taken together, our results reveal that elevated [CO2] enhances growth only within a narrow developmental window, in which GA biosynthesis is dispensable. This finding could be relevant for breeding crops in the face of the expected increases in atmospheric CO2 over the next century.
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Affiliation(s)
- Karla Gasparini
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
| | - Lucas C Costa
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
| | - Fred A L Brito
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
| | - Thaline M Pimenta
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
| | | | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
| | - Agustín Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil.
| | - Dimas M Ribeiro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brasil
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29
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Condori-Apfata JA, Batista-Silva W, Medeiros DB, Vargas JR, Valente LML, Heyneke E, Pérez-Diaz JL, Fernie AR, Araújo WL, Nunes-Nesi A. The Arabidopsis E 1 subunit of the 2-oxoglutarate dehydrogenase complex modulates plant growth and seed production. PLANT MOLECULAR BIOLOGY 2019; 101:183-202. [PMID: 31286324 DOI: 10.1007/s11103-019-00900-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Accepted: 06/29/2019] [Indexed: 05/25/2023]
Abstract
Isoforms of 2-OGDH E1 subunit are not functionally redundant in plant growth and development of A. thaliana. The tricarboxylic acid cycle enzyme 2-oxoglutarate dehydrogenase (2-OGDH) converts 2-oxoglutarate (2-OG) to succinyl-CoA concomitant with the reduction of NAD+. 2-OGDH has an essential role in plant metabolism, being both a limiting step during mitochondrial respiration as well as a key player in carbon-nitrogen interactions. In Arabidopsis thaliana two genes encode for E1 subunit of 2-OGDH but the physiological roles of each isoform remain unknown. Thus, in the present study we isolated Arabidopsis T-DNA insertion knockout mutant lines for each of the genes encoding the E1 subunit of 2-OGDH enzyme. All mutant plants exhibited substantial reduction in both respiration and CO2 assimilation rates. Furthermore, mutant lines exhibited reduced levels of chlorophylls and nitrate, increased levels of sucrose, malate and fumarate and minor changes in total protein and starch levels in leaves. Despite the similar metabolic phenotypes for the two E1 isoforms the reduction in the expression of each gene culminated in different responses in terms of plant growth and seed production indicating distinct roles for each isoform. Collectively, our results demonstrated the importance of the E1 subunit of 2-OGDH in both autotrophic and heterotrophic tissues and suggest that the two E1 isoforms are not functionally redundant in terms of plant growth in A. thaliana.
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Affiliation(s)
- Jorge A Condori-Apfata
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Willian Batista-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - David Barbosa Medeiros
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Jonas Rafael Vargas
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Luiz Mário Lopes Valente
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Elmien Heyneke
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam Golm, Germany
| | - Jorge Luis Pérez-Diaz
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam Golm, Germany
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil.
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Zhang Y, Shi M, Mao X, Kou Y, Liu J. Time-resolved carotenoid profiling and transcriptomic analysis reveal mechanism of carotenogenesis for astaxanthin synthesis in the oleaginous green alga Chromochloris zofingiensis. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:287. [PMID: 31890015 PMCID: PMC6913025 DOI: 10.1186/s13068-019-1626-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 12/04/2019] [Indexed: 05/03/2023]
Abstract
BACKGROUND Chromochloris zofingiensis is emerging as an industrially relevant alga given its robust growth for the production of lipids and astaxanthin, a value-added carotenoid with broad applications. Nevertheless, poor understanding of astaxanthin synthesis has limited engineering of this alga for rational improvements. RESULTS To reveal the molecular mechanism underlying astaxanthin accumulation in C. zofingiensis, here we conducted an integrated analysis by combining the time-resolved transcriptomes and carotenoid profiling in response to nitrogen deprivation (ND). A global response was triggered for C. zofingiensis to cope with the ND stress. Albeit the little variation in total carotenoid content, individual carotenoids responded differentially to ND: the primary carotenoids particularly lutein and β-carotene decreased, while the secondary carotenoids increased considerably, with astaxanthin and canthaxanthin being the most increased ones. The carotenogenesis pathways were reconstructed: ND had little effect on the carbon flux to carotenoid precursors, but stimulated astaxanthin biosynthesis while repressing lutein biosynthesis, thereby diverting the carotenoid flux from primary carotenoids to secondary carotenoids particularly astaxanthin. Comparison between C. zofingiensis and Haematococcus pluvialis revealed the distinctive mechanism of astaxanthin synthesis in C. zofingiensis. Furthermore, potential bottlenecks in astaxanthin synthesis were identified and possible engineering strategies were proposed for the alga. CONCLUSIONS Collectively, these findings shed light on distinctive mechanism of carotenogenesis for astaxanthin biosynthesis in C. zofingiensis, identify key functional enzymes and regulators with engineering potential and will benefit rational manipulation of this alga for improving nutritional traits.
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Affiliation(s)
- Yu Zhang
- Laboratory for Algae Biotechnology & Innovation, College of Engineering, Peking University, Beijing, 100871 China
| | - Meicheng Shi
- Laboratory for Algae Biotechnology & Innovation, College of Engineering, Peking University, Beijing, 100871 China
| | - Xuemei Mao
- Laboratory for Algae Biotechnology & Innovation, College of Engineering, Peking University, Beijing, 100871 China
| | - Yaping Kou
- Laboratory for Algae Biotechnology & Innovation, College of Engineering, Peking University, Beijing, 100871 China
| | - Jin Liu
- Laboratory for Algae Biotechnology & Innovation, College of Engineering, Peking University, Beijing, 100871 China
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Alseekh S, Bermudez L, de Haro LA, Fernie AR, Carrari F. Crop metabolomics: from diagnostics to assisted breeding. Metabolomics 2018; 14:148. [PMID: 30830402 DOI: 10.1007/s11306-018-1446-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Accepted: 10/26/2018] [Indexed: 01/02/2023]
Abstract
BACKGROUND Until recently, plant metabolomics have provided a deep understanding on the metabolic regulation in individual plants as experimental units. The application of these techniques to agricultural systems subjected to more complex interactions is a step towards the implementation of translational metabolomics in crop breeding. AIM OF REVIEW We present here a review paper discussing advances in the knowledge reached in the last years derived from the application of metabolomic techniques that evolved from biomarker discovery to improve crop yield and quality. KEY SCIENTIFIC CONCEPTS OF REVIEW Translational metabolomics applied to crop breeding programs.
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Affiliation(s)
- Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000, Plovdiv, Bulgaria
| | - Luisa Bermudez
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), PO Box 25, B1686WAA, Castelar, Argentina
- Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Luis Alejandro de Haro
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), PO Box 25, B1686WAA, Castelar, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Golm, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000, Plovdiv, Bulgaria
| | - Fernando Carrari
- Instituto de Biotecnología, Instituto Nacional de Tecnología Agropecuaria (IB-INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), PO Box 25, B1686WAA, Castelar, Argentina.
- Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina.
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, São Paulo, 05508-090, Brazil.
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-UBA-CONICET), Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina.
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Tang S, Chen W, Liu W, Zhou Q, Zhang H, Wang S, Ding Y. Open-field warming regulates the morphological structure, protein synthesis of grain and affects the appearance quality of rice. J Cereal Sci 2018. [DOI: 10.1016/j.jcs.2018.09.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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James D, Borphukan B, Fartyal D, Ram B, Singh J, Manna M, Sheri V, Panditi V, Yadav R, Achary VMM, Reddy MK. Concurrent Overexpression of OsGS1;1 and OsGS2 Genes in Transgenic Rice ( Oryza sativa L.): Impact on Tolerance to Abiotic Stresses. FRONTIERS IN PLANT SCIENCE 2018; 9:786. [PMID: 29977247 PMCID: PMC6021690 DOI: 10.3389/fpls.2018.00786] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 05/23/2018] [Indexed: 05/18/2023]
Abstract
Glutamine synthetase (GS) is a key enzyme involved in the nitrogen metabolism of higher plants. Abiotic stresses have adverse effects on crop production and pose a serious threat to global food security. GS activity and expression is known to be significantly modulated by various abiotic stresses. However, very few transgenic overexpression studies of GS have studied its impact on abiotic stress tolerance. GS is also the target enzyme of the broad spectrum herbicide Glufosinate (active ingredient: phosphinothricin). In this study, we investigated the effect of concurrent overexpression of the rice cytosolic GS1 (OsGS1;1) and chloroplastic GS2 (OsGS2) genes in transgenic rice on its tolerance to abiotic stresses and the herbicide Glufosinate. Our results demonstrate that the co-overexpression of OsGS1;1 and OsGS2 isoforms in transgenic rice plants enhanced its tolerance to osmotic and salinity stress at the seedling stage. The transgenic lines maintained significantly higher fresh weight, chlorophyll content, and relative water content than wild type (wt) and null segregant (ns) controls, under both osmotic and salinity stress. The OsGS1;1/OsGS2 co-overexpressing transgenic plants accumulated higher levels of proline but showed lower electrolyte leakage and had lower malondialdehyde (MDA) content under the stress treatments. The transgenic lines showed considerably enhanced photosynthetic and agronomic performance under drought and salinity stress imposed during the reproductive stage, as compared to wt and ns control plants. The grain filling rates of the transgenic rice plants under reproductive stage drought stress (64.6 ± 4.7%) and salinity stress (58.2 ± 4.5%) were significantly higher than control plants, thereby leading to higher yields under these abiotic stress conditions. Preliminary analysis also revealed that the transgenic lines had improved tolerance to methyl viologen induced photo-oxidative stress. Taken together, our results demonstrate that the concurrent overexpression of OsGS1;1 and OsGS2 isoforms in rice enhanced physiological tolerance and agronomic performance under adverse abiotic stress conditions, apparently acting through multiple mechanistic routes. The transgenic rice plants also showed limited tolerance to the herbicide Glufosinate. The advantages and limitations of glutamine synthetase overexpression in crop plants, along with future strategies to overcome these limitations for utilization in crop improvement have also been discussed briefly.
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Affiliation(s)
- Donald James
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Bhabesh Borphukan
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Dhirendra Fartyal
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
- Department of Biotechnology, Uttarakhand Technical University, Dehradun, India
| | - Babu Ram
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
- Department of Biotechnology, Uttarakhand Technical University, Dehradun, India
| | - Jitender Singh
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
- National Institute of Plant Genome Research, New Delhi, India
| | - Mrinalini Manna
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Vijay Sheri
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Varakumar Panditi
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Renu Yadav
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - V. Mohan M. Achary
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Mallireddy K. Reddy
- Crop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India
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Park CH, Yeo HJ, Kim NS, Park YE, Park SY, Kim JK, Park SU. Metabolomic Profiling of the White, Violet, and Red Flowers of Rhododendron schlippenbachii Maxim. Molecules 2018; 23:E827. [PMID: 29617312 PMCID: PMC6017568 DOI: 10.3390/molecules23040827] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 03/23/2018] [Accepted: 03/27/2018] [Indexed: 11/25/2022] Open
Abstract
Rhododendron schlippenbachii Maxim. is a garden plant that is also used for natural medicines as a consequence of the biological activities of its diverse metabolites. We accordingly profiled two anthocyanins and 40 primary and secondary metabolites in the three different colored flowers. The major anthocyanins found in the flowers were cyanidins. The red flowers exhibited the highest accumulation of anthocyanins (1.02 ± 0.02 mg/g dry weight). Principal component analysis was applied to the GC‒TOFMS data. The levels of key tricarboxylic acid cycle intermediates in red flowers, such as succinic acid, fumaric acid, and malic acid, were found to be highly significantly different (p < 0.0001) from those in the flowers of other colors. In this study, we aimed to determine metabolite interactions and phenotypic variation among white, violet, and red flowers of R. schlippenbachii by using gas chromatography time-of-flight mass spectrometry (GC‒TOFMS) and high-performance liquid chromatography (HPLC).
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Affiliation(s)
- Chang Ha Park
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Hyeon Ji Yeo
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Nam Su Kim
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Ye Eun Park
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Soo-Yun Park
- National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gun, Jeonbuk 54875, Korea.
| | - Jae Kwang Kim
- Division of Life Sciences and Bio-Resource and Environmental Center, Incheon National University, Incheon 406-772, Korea.
| | - Sang Un Park
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 34134, Korea.
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Park CH, Yeo HJ, Baskar TB, Kim JK, Park SU. Metabolic Profiling and Chemical-Based Antioxidant Assays of Green and Red Lettuce (Lactuca sativa). Nat Prod Commun 2018. [DOI: 10.1177/1934578x1801300313] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Lettuce ( Lactuca sativa) is an important leaf vegetable crop worldwide. The total phenolic content was higher in the red skirt methanol extracts with a level of 64.9 ± 0.3 mg GA/g, and phenolic content of green skirt was 49.4 ± 0.3 mg GA/g. The total flavonoid content in the methanol extract of red skirt showed the highest concentration (291.6 ± 9.0 mg rutin/g), followed by green skirt (223 ± 9.8 mg rutin/g). The red skirt showed a higher content of anthocyanin (23.7 ± 0.8 mg/100 g) compared to the green skirt (7.4 ± 0.9 mg/100 g). Seven carotenoids i.e., lutein, β–carotene, 9 Z–β–carotene, 13 Z–β–carotene, violaxanthin, zeaxanthin, and α–carotene were detected in both cultivars. The polar metabolites are strongly associated with the metabolites that participate in the TCA cycle. Correlations between primary and secondary metabolites were easily achieved by gas chromatography-time-of-flight mass spectrometry (GC-TOFMS)-based metabolite profiling method. Red skirt methanol extract showed 77.5 ± 0.4% 2,2-diphenyl-1-picrylhydrazyl (DPPH) activity, 50.8 ± 0.8% hydrogen peroxide radical scavenging assay and absorbance value (0.052) reducing power assay at 250 μL/mL, having significantly higher activity than the green skirt extract. The red lettuce extract also showed higher levels of phenolic compounds, flavonoids, and anthocyanins, and it possesses more antioxidant properties compared to the green skirt extract. In this study we compared two cultivars of lettuce, red skirt and green skirt, for various nutritional parameters and to understand the association of secondary metabolites with their corresponding primary metabolites. From the overall analysis, it is confirmed that GC-TOFMS-based metabolite profiling is an appropriate method for determining biochemical reactions and also acts as a combined resource to understand primary and secondary metabolism.
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Affiliation(s)
- Chang Ha Park
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Korea
| | - Hyeon Ji Yeo
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Korea
| | - Thanislas Bastin Baskar
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Korea
| | - Jae Kwang Kim
- Division of Life Sciences and Bio-Resource and Environmental Center, Incheon National University, Incheon 406–772, Korea
| | - Sang Un Park
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Korea
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Gangwar M, Sood A, Bansal A, Chauhan RS. Comparative transcriptomics reveals a reduction in carbon capture and flux between source and sink in cytokinin-treated inflorescences of Jatropha curcas L. 3 Biotech 2018; 8:64. [PMID: 29354375 DOI: 10.1007/s13205-018-1089-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 01/04/2018] [Indexed: 12/27/2022] Open
Abstract
The low seed yield of Jatropha curcas has been a stumbling block in realizing its full potential as an ideal bioenergy crop. Low female to male flower ratio is considered as a major limiting factor responsible for low seed yield in Jatropha. An exogenous cytokinin application was performed on floral meristems to increase the seed yield. This resulted in an increase of total flowers count with a higher female to male flower ratio. However, the seed biomass did not increase in the same proportion. The possible reason for this was hypothesized to be the lack of increased photosynthesis efficiency at source tissues which could fulfil the increased demand of photosynthates and primary metabolites in maturing seeds. After cytokinin application, possible molecular mechanisms underlying carbon capture and flux affected between the source and sink in developing flowers, fruits and seeds were investigated. Comparative transcriptome analysis was performed on inflorescence meristems (treated with cytokinin) and control (untreated inflorescence meristems) at time intervals of 15 and 30 days, respectively. KEGG-based functional annotation identified various metabolic pathways associated with carbon capture and flux. Pathways such as photosynthesis, carbon fixation, carbohydrate metabolism and nitrogen metabolism were upregulated after 15 days of cytokinin treatment; however, those were downregulated after 30 days. Five genes FBP, SBP, GS, GDH and AGPase showed significant increase in transcript abundance after 15 days of treatment but showed a significant decrease after 30 days. These genes, after functional validation, can be suitable targets in designing a suitable genetic intervention strategy to increase overall seed yield in Jatropha.
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Abadie C, Lothier J, Boex-Fontvieille E, Carroll A, Tcherkez G. Direct assessment of the metabolic origin of carbon atoms in glutamate from illuminated leaves using 13 C-NMR. THE NEW PHYTOLOGIST 2017; 216:1079-1089. [PMID: 28771732 DOI: 10.1111/nph.14719] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 06/25/2017] [Indexed: 05/21/2023]
Abstract
Glutamate (Glu) is the cornerstone of nitrogen assimilation and photorespiration in illuminated leaves. Despite this crucial role, our knowledge of the flux to Glu de novo synthesis is rather limited. Here, we used isotopic labelling with 13 CO2 and 13 C-NMR analyses to examine the labelling pattern and the appearance of multi-labelled species of Glu molecules to trace the origin of C-atoms found in Glu. We also compared this with 13 C-labelling patterns in Ala and Asp, which reflect citrate (and thus Glu) precursors, that is, pyruvate and oxaloacetate. Glu appeared to be less 13 C-labelled than Asp and Ala, showing that the Glu pool was mostly formed by 'old' carbon atoms. There were modest differences in intramolecular 13 C-13 C couplings between Glu C-2 and Asp C-3, showing that oxaloacetate metabolism to Glu biosynthesis did not involve C-atom redistribution by the Krebs cycle. The apparent carbon allocation increased with carbon net photosynthesis. However, when expressed relative to CO2 fixation, it was clearly higher at low CO2 while it did not change in 2% O2 , as compared to standard conditions. We conclude that Glu production from current photosynthetic carbon represents a small flux that is controlled by the gaseous environment, typically upregulated at low CO2 .
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Affiliation(s)
- Cyril Abadie
- Research School of Biology, College of Medicine, Biology and Environment, Australian National University, Canberra, ACT, 2601, Australia
| | - Jérémy Lothier
- IRHS, Agrocampus-Ouest, INRA, Université d'Angers, SFR 4207 QuaSaV, 42 Rue Georges Morel, Beaucouzé, 49071, France
| | - Edouard Boex-Fontvieille
- Laboratoire de Police Scientifique de Lyon, Institut National de Police Scientifique, 31 Avenue Franklin Roosevelt, Écully Cedex, 69134, France
| | - Adam Carroll
- Research School of Biology, College of Medicine, Biology and Environment, Australian National University, Canberra, ACT, 2601, Australia
| | - Guillaume Tcherkez
- Research School of Biology, College of Medicine, Biology and Environment, Australian National University, Canberra, ACT, 2601, Australia
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Zhou Q, Gao J, Zhang R, Zhang R. Ammonia stress on nitrogen metabolism in tolerant aquatic plant-Myriophyllum aquaticum. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 143:102-110. [PMID: 28525813 DOI: 10.1016/j.ecoenv.2017.04.016] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Revised: 03/27/2017] [Accepted: 04/10/2017] [Indexed: 06/07/2023]
Abstract
Ammonia has been a major reason of macrophyte decline in the water environment, and ammonium ion toxicity should be seen as universal, even in species frequently labeled as "NH4+ specialists". To study the effects of high NH4+-N stress of ammonium ion nitrogen on tolerant submerged macrophytes and investigate the pathways of nitrogen assimilation in different organisms, Myriophyllum aquaticum was selected and treated with various concentrations of ammonium ions at different times. Increasing of ammonium concentration leads to an overall increase in incipient ammonia content in leaves and stems of plants. In middle and later stages, high concentrations of NH4+ ion nitrogen taken up by M. aquaticum decreased, whereas the content of NO3- ion nitrogen increased. Moreover, in M. aquaticum, the activities of the enzymes nitrate reductase, glutamine synthetase and asparagine synthetase changed remarkably in the process of alleviating NH4+ toxicity and deficiency. The results of the present study may support the studies on detoxification of high ammonium ion content in NH4+-tolerant submerged macrophytes and exploration of tissue-specific expression systems.
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Affiliation(s)
- Qingyang Zhou
- The College of Chemistry and Molecular Engineering/Institute of Environmental Sciences, Zhengzhou University, Zhengzhou, Henan, PR China
| | - Jingqing Gao
- College of Water Conservancy and Environmental Engineering, Zhengzhou University, Zhengzhou, Henan, PR China.
| | - Ruimin Zhang
- The College of Chemistry and Molecular Engineering/Institute of Environmental Sciences, Zhengzhou University, Zhengzhou, Henan, PR China
| | - Ruiqin Zhang
- The College of Chemistry and Molecular Engineering/Institute of Environmental Sciences, Zhengzhou University, Zhengzhou, Henan, PR China
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Stringent Expression Control of Pathogenic R-body Production in Legume Symbiont Azorhizobium caulinodans. mBio 2017; 8:mBio.00715-17. [PMID: 28743814 PMCID: PMC5527310 DOI: 10.1128/mbio.00715-17] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
R bodies are insoluble large polymers consisting of small proteins encoded by reb genes and are coiled into cylindrical structures in bacterial cells. They were first discovered in Caedibacter species, which are obligate endosymbionts of paramecia. Caedibacter confers a killer trait on the host paramecia. R-body-producing symbionts are released from their host paramecia and kill symbiont-free paramecia after ingestion. The roles of R bodies have not been explained in bacteria other than Caedibacter. Azorhizobium caulinodans ORS571, a microsymbiont of the legume Sesbania rostrata, carries a reb operon containing four reb genes that are regulated by the repressor PraR. Herein, deletion of the praR gene resulted in R-body formation and death of host plant cells. The rebR gene in the reb operon encodes an activator. Three PraR binding sites and a RebR binding site are present in the promoter region of the reb operon. Expression analyses using strains with mutations within the PraR binding site and/or the RebR binding site revealed that PraR and RebR directly control the expression of the reb operon and that PraR dominantly represses reb expression. Furthermore, we found that the reb operon is highly expressed at low temperatures and that 2-oxoglutarate induces the expression of the reb operon by inhibiting PraR binding to the reb promoter. We conclude that R bodies are toxic not only in paramecium symbiosis but also in relationships between other bacteria and eukaryotic cells and that R-body formation is controlled by environmental factors. Caedibacter species, which are obligate endosymbiotic bacteria of paramecia, produce R bodies, and R-body-producing endosymbionts that are released from their hosts are pathogenic to symbiont-free paramecia. Besides Caedibacter species, R bodies have also been observed in a few free-living bacteria, but the significance of R-body production in these bacteria is still unknown. Recent advances in genome sequencing technologies revealed that many Gram-negative bacteria possess reb genes encoding R-body components, and interestingly, many of them are animal and plant pathogens. Azorhizobium caulinodans, a microsymbiont of the tropical legume Sesbania rostrata, also possesses reb genes. In this study, we demonstrate that A. caulinodans has ability to kill the host plant cells by producing R bodies, suggesting that pathogenicity conferred by an R body might be universal in bacteria possessing reb genes. Furthermore, we provide the first insight into the molecular mechanism underlying the expression of R-body production in response to environmental factors, such as temperature and 2-oxoglutarate.
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Hartmann M, Kim D, Bernsdorff F, Ajami-Rashidi Z, Scholten N, Schreiber S, Zeier T, Schuck S, Reichel-Deland V, Zeier J. Biochemical Principles and Functional Aspects of Pipecolic Acid Biosynthesis in Plant Immunity. PLANT PHYSIOLOGY 2017; 174:124-153. [PMID: 28330936 PMCID: PMC5411157 DOI: 10.1104/pp.17.00222] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 03/21/2017] [Indexed: 05/03/2023]
Abstract
The nonprotein amino acid pipecolic acid (Pip) regulates plant systemic acquired resistance and basal immunity to bacterial pathogen infection. In Arabidopsis (Arabidopsis thaliana), the lysine (Lys) aminotransferase AGD2-LIKE DEFENSE RESPONSE PROTEIN1 (ALD1) mediates the pathogen-induced accumulation of Pip in inoculated and distal leaf tissue. Here, we show that ALD1 transfers the α-amino group of l-Lys to acceptor oxoacids. Combined mass spectrometric and infrared spectroscopic analyses of in vitro assays and plant extracts indicate that the final product of the ALD1-catalyzed reaction is enaminic 2,3-dehydropipecolic acid (DP), whose formation involves consecutive transamination, cyclization, and isomerization steps. Besides l-Lys, recombinant ALD1 transaminates l-methionine, l-leucine, diaminopimelate, and several other amino acids to generate oxoacids or derived products in vitro. However, detailed in planta analyses suggest that the biosynthesis of 2,3-DP from l-Lys is the major in vivo function of ALD1. Since ald1 mutant plants are able to convert exogenous 2,3-DP into Pip, their Pip deficiency relies on the inability to form the 2,3-DP intermediate. The Arabidopsis reductase ornithine cyclodeaminase/μ-crystallin, alias SYSTEMIC ACQUIRED RESISTANCE-DEFICIENT4 (SARD4), converts ALD1-generated 2,3-DP into Pip in vitro. SARD4 significantly contributes to the production of Pip in pathogen-inoculated leaves but is not the exclusive reducing enzyme involved in Pip biosynthesis. Functional SARD4 is required for proper basal immunity to the bacterial pathogen Pseudomonas syringae Although SARD4 knockout plants show greatly reduced accumulation of Pip in leaves distal to P. syringae inoculation, they display a considerable systemic acquired resistance response. This suggests a triggering function of locally accumulating Pip for systemic resistance induction.
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Affiliation(s)
- Michael Hartmann
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Denis Kim
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Friederike Bernsdorff
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Ziba Ajami-Rashidi
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Nicola Scholten
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Stefan Schreiber
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Tatyana Zeier
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Stefan Schuck
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Vanessa Reichel-Deland
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
| | - Jürgen Zeier
- Institute for Molecular Ecophysiology of Plants (M.H., D.K., F.B., Z.A.-R., N.S., S.Schr., T.Z., S.Schu., V.R.-D., J.Z.) and Cluster of Excellence on Plant Sciences (Z.A.-R., S.Schu., J.Z.), Heinrich Heine University, D-40225 Duesseldorf, Germany
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Lie AAY, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA. Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp. BMC Genomics 2017; 18:163. [PMID: 28196482 PMCID: PMC5310065 DOI: 10.1186/s12864-017-3549-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Accepted: 02/02/2017] [Indexed: 12/21/2022] Open
Abstract
Background Ochromonas is a genus of mixotrophic chrysophytes that is found ubiquitously in many aquatic environments. Species in this genus can be important consumers of bacteria but vary in their ability to perform photosynthesis. We studied the effect of light and bacteria on growth and gene expression of a predominantly phagotrophic Ochromonas species. Axenic cultures of Ochromonas sp. were fed with heat-killed bacteria (HKB) and grown in constant light or darkness. RNA was extracted from cultures in the light or in the dark with HKB present (Light + HKB; Dark + HKB), and in the light after HKB were depleted (Light + depleted HKB). Results There were no significant differences in the growth or bacterial ingestion rates between algae grown in light or dark conditions. The availability of light led to a differential expression of only 8% of genes in the transcriptome. A number of genes associated with photosynthesis, phagotrophy, and tetrapyrrole synthesis was upregulated in the Light + HKB treatment compared to Dark + HKB. Conversely, the comparison between the Light + HKB and Light + depleted HKB treatments revealed that the presence of HKB led to differential expression of 59% of genes, including the majority of genes involved in major carbon and nitrogen metabolic pathways. Genes coding for unidirectional enzymes for the utilization of glucose were upregulated in the presence of HKB, implying increased glycolytic activities during phagotrophy. Algae without HKB upregulated their expression of genes coding for ammonium transporters, implying uptake of inorganic nitrogen from the culture medium when prey were unavailable. Conclusions Transcriptomic results agreed with previous observations that light had minimal effect on the population growth of Ochromonas sp. However, light led to the upregulation of a number of phototrophy- and phagotrophy-related genes, while the availability of bacterial prey led to prominent changes in major carbon and nitrogen metabolic pathways. Our study demonstrated the potential of transcriptomic approaches to improve our understanding of the trophic physiologies of complex mixotrophs, and revealed responses in Ochromonas sp. not apparent from traditional culture studies. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3549-1) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Alle A Y Lie
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA.
| | - Zhenfeng Liu
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA
| | - Ramon Terrado
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA
| | - Avery O Tatters
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA
| | - Karla B Heidelberg
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA
| | - David A Caron
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089-0371, USA
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Usuki F, Narisawa K. A mutualistic symbiosis between a dark septate endophytic fungus,Heteroconium chaetospira,and a nonmycorrhizal plant, Chinese cabbage. Mycologia 2017. [DOI: 10.1080/15572536.2007.11832577] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - Kazuhiko Narisawa
- Plant Biotechnology Institute, Ibaraki Agricultural Center, 3165-1 Ago, Iwama, Nishi-Ibaraki 319-0292, Japan
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43
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Maroli A, Nandula V, Duke S, Tharayil N. Stable Isotope Resolved Metabolomics Reveals the Role of Anabolic and Catabolic Processes in Glyphosate-Induced Amino Acid Accumulation in Amaranthus palmeri Biotypes. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:7040-8. [PMID: 27469508 DOI: 10.1021/acs.jafc.6b02196] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Biotic and abiotic stressors often result in the buildup of amino acid pools in plants, which serve as potential stress mitigators. However, the role of anabolic (de novo amino acid synthesis) versus catabolic (proteolytic) processes in contributing to free amino acid pools is less understood. Using stable isotope-resolved metabolomics (SIRM), we measured the de novo amino acid synthesis in glyphosate susceptible (S-) and resistant (R-) Amaranthus palmeri biotypes. In the S-biotype, glyphosate treatment at 0.4 kg ae/ha resulted in an increase in total amino acids, a proportional increase in both (14)N and (15)N amino acids, and a decrease in soluble proteins. This indicates a potential increase in de novo amino acid synthesis, coupled with a lower protein synthesis and a higher protein catabolism following glyphosate treatment in the S-biotype. Furthermore, the ratio of glutamine/glutamic acid (Gln/Glu) in the glyphosate-treated S- and R-biotypes indicated that the initial assimilation of inorganic nitrogen to organic forms is less affected by glyphosate. However, amino acid biosynthesis downstream of glutamine is disproportionately disrupted in the glyphosate treated S-biotype. It is thus concluded that the herbicide-induced amino acid abundance in the S-biotype is contributed by both protein catabolism and de novo synthesis of amino acids such as glutamine and asparagine.
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Affiliation(s)
- Amith Maroli
- Department of Plant & Environmental Sciences, Clemson University , Clemson, South Carolina 29634, United States
| | - Vijay Nandula
- Crop Production Systems Research Unit, U.S. Department of Agriculture , Stoneville, Mississippi 38776, United States
| | - Stephen Duke
- Natural Products Utilization Research Unit, Agricultural Research Service, U.S. Department of Agriculture , Oxford, Mississippi 38677, United States
| | - Nishanth Tharayil
- Department of Plant & Environmental Sciences, Clemson University , Clemson, South Carolina 29634, United States
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Yu LH, Wu J, Tang H, Yuan Y, Wang SM, Wang YP, Zhu QS, Li SG, Xiang CB. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep 2016; 6:27795. [PMID: 27293103 PMCID: PMC4904239 DOI: 10.1038/srep27795] [Citation(s) in RCA: 78] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Accepted: 05/20/2016] [Indexed: 11/09/2022] Open
Abstract
Nitrogen is essential for plant survival and growth. Excessive application of nitrogenous fertilizer has generated serious environment pollution and increased production cost in agriculture. To deal with this problem, tremendous efforts have been invested worldwide to increase the nitrogen use ability of crops. However, only limited success has been achieved to date. Here we report that NLP7 (NIN-LIKE PROTEIN 7) is a potential candidate to improve plant nitrogen use ability. When overexpressed in Arabidopsis, NLP7 increases plant biomass under both nitrogen-poor and -rich conditions with better-developed root system and reduced shoot/root ratio. NLP7-overexpressing plants show a significant increase in key nitrogen metabolites, nitrogen uptake, total nitrogen content, and expression levels of genes involved in nitrogen assimilation and signalling. More importantly, overexpression of NLP7 also enhances photosynthesis rate and carbon assimilation, whereas knockout of NLP7 impaired both nitrogen and carbon assimilation. In addition, NLP7 improves plant growth and nitrogen use in transgenic tobacco (Nicotiana tabacum). Our results demonstrate that NLP7 significantly improves plant growth under both nitrogen-poor and -rich conditions by coordinately enhancing nitrogen and carbon assimilation and sheds light on crop improvement.
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Affiliation(s)
- Lin-Hui Yu
- School of Life Sciences, University of Science and Technology of China, Hefei, Anhui Province 230027, China
| | - Jie Wu
- School of Life Sciences, University of Science and Technology of China, Hefei, Anhui Province 230027, China
| | - Hui Tang
- School of Life Sciences, University of Science and Technology of China, Hefei, Anhui Province 230027, China
| | - Yang Yuan
- School of Life Sciences, University of Science and Technology of China, Hefei, Anhui Province 230027, China
| | - Shi-Mei Wang
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei 230031, China
| | - Yu-Ping Wang
- Rice Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Qi-Sheng Zhu
- Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei 230031, China
| | - Shi-Gui Li
- Rice Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Cheng-Bin Xiang
- School of Life Sciences, University of Science and Technology of China, Hefei, Anhui Province 230027, China
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45
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Park CH, Baskar TB, Park SY, Kim SJ, Valan Arasu M, Al-Dhabi NA, Kim JK, Park SU. Metabolic Profiling and Antioxidant Assay of Metabolites from Three Radish Cultivars (Raphanus sativus). Molecules 2016; 21:157. [PMID: 26828471 PMCID: PMC6273575 DOI: 10.3390/molecules21020157] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 01/07/2016] [Accepted: 01/21/2016] [Indexed: 02/05/2023] Open
Abstract
A total of 13 anthocyanins and 33 metabolites; including organic acids, phenolic acids, amino acids, organic compounds, sugar acids, sugar alcohols, and sugars, were profiled in three radish cultivars by using high-performance liquid chromatography (HPLC) and gas chromatography time-of-flight mass spectrometry (GC-TOFMS)-based metabolite profiling. Total phenolics and flavonoids and their in vitro antioxidant activities were assessed. Pelargonidins were found to be the major anthocyanin in the cultivars studied. The cultivar Man Tang Hong showed the highest level of anthocyanins (1.89 ± 0.07 mg/g), phenolics (0.0664 ± 0.0033 mg/g) and flavonoids (0.0096 ± 0.0004 mg/g). Here; the variation of secondary metabolites in the radishes is described, as well as their association with primary metabolites. The low-molecular-weight hydrophilic metabolite profiles were subjected to principal component analysis (PCA), hierarchical clustering analysis (HCA), Pearson’s correlation analysis. PCA fully distinguished the three radish cultivars tested. The polar metabolites were strongly correlated between metabolites that participate in the TCA cycle. The chemometrics results revealed that TCA cycle intermediates and free phenolic acids as well as anthocyanins were higher in the cultivar Man Tang Hong than in the others. Furthermore; superoxide radical scavenging activities and 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging were investigated to elucidate the antioxidant activity of secondary metabolites in the cultivars. Man Tang Hong showed the highest superoxide radical scavenging activity (68.87%) at 1000 μg/mL, and DPPH activity (20.78%), followed by Seo Ho and then Hong Feng No. 1. The results demonstrate that GC-TOFMS-based metabolite profiling, integrated with chemometrics, is an applicable method for distinguishing phenotypic variation and determining biochemical reactions connecting primary and secondary metabolism. Therefore; this study might provide information on the relationship between primary and secondary metabolites and a synergistic antioxidant ability derived from the secondary metabolites in the radish cultivars.
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Affiliation(s)
- Chang Ha Park
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 305-764, Korea.
| | - Thanislas Bastin Baskar
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 305-764, Korea.
| | - Soo-Yun Park
- National Academy of Agricultural Science, Rural Development Administration, Wanju-gun, Jeollabuk-do 565-851, Korea.
| | - Sun-Ju Kim
- Department of Bio-Environmental Chemistry, Chungnam National University, 99 Daehak-Ro, Yuseong-Gu, Daejeon 305-764, Korea.
| | - Mariadhas Valan Arasu
- Department of Botany and Microbiology, Addiriyah Chair for Environmental Studies, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
| | - Naif Abdullah Al-Dhabi
- Department of Botany and Microbiology, Addiriyah Chair for Environmental Studies, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
| | - Jae Kwang Kim
- Division of Life Sciences and Bio-Resource and Environmental Center, Incheon National University, Incheon 406-772, Korea.
| | - Sang Un Park
- Department of Crop Science, Chungnam National University, 99 Daehak-Ro, Yuseong-gu, Daejeon 305-764, Korea.
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Vega-Mas I, Marino D, Sánchez-Zabala J, González-Murua C, Estavillo JM, González-Moro MB. CO2 enrichment modulates ammonium nutrition in tomato adjusting carbon and nitrogen metabolism to stomatal conductance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 241:32-44. [PMID: 26706056 DOI: 10.1016/j.plantsci.2015.09.021] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Revised: 09/02/2015] [Accepted: 09/23/2015] [Indexed: 05/23/2023]
Abstract
Ammonium (NH4(+)) toxicity typically occurs in plants exposed to high environmental NH4(+) concentration. NH4(+) assimilating capacity may act as a biochemical mechanism avoiding its toxic accumulation but requires a fine tuning between nitrogen assimilating enzymes and carbon anaplerotic routes. In this work, we hypothesized that extra C supply, exposing tomato plants cv. Agora Hybrid F1 to elevated atmospheric CO2, could improve photosynthetic process and thus ameliorate NH4(+) assimilation and tolerance. Plants were grown under nitrate (NO3(-)) or NH4(+) as N source (5-15mM), under two atmospheric CO2 levels, 400 and 800ppm. Growth and gas exchange parameters, (15)N isotopic signature, C and N metabolites and enzymatic activities were determined. Plants under 7.5mM N equally grew independently of the N source, while higher ammonium supply resulted toxic for growth. However, specific stomatal closure occurred in 7.5mM NH4(+)-fed plants under elevated CO2 improving water use efficiency (WUE) but compromising plant N status. Elevated CO2 annulled the induction of TCA anaplerotic enzymes observed at non-toxic NH4(+) nutrition under ambient CO2. Finally, CO2 enrichment benefited tomato growth under both nutritions, and although it did not alleviate tomato NH4(+) tolerance it did differentially regulate plant metabolism in N-source and -dose dependent manner.
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Affiliation(s)
- Izargi Vega-Mas
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
| | - Daniel Marino
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain; Ikerbasque, Basque Foundation for Science, E-48011 Bilbao, Spain.
| | - Joseba Sánchez-Zabala
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
| | - Carmen González-Murua
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
| | - Jose María Estavillo
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
| | - María Begoña González-Moro
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
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Gebril S, Seger M, Villanueva FM, Ortega JL, Bagga S, Sengupta-Gopalan C. Transgenic alfalfa (Medicago sativa) with increased sucrose phosphate synthase activity shows enhanced growth when grown under N2-fixing conditions. PLANTA 2015; 242:1009-24. [PMID: 26055333 DOI: 10.1007/s00425-015-2342-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 05/31/2015] [Indexed: 05/21/2023]
Abstract
Overexpression of SPS in alfalfa is accompanied by early flowering, increased plant growth and an increase in elemental N and protein content when grown under N2-fixing conditions. Sucrose phosphate synthase (SPS; EC 2.3.1.14) is the key enzyme in the synthesis of sucrose in plants. The outcome of overexpression of SPS in different plants using transgenic approaches has been quite varied, but the general consensus is that increased SPS activity is associated with the production of new sinks and increased sink strength. In legumes, the root nodule is a strong C sink and in this study our objective was to see how increasing SPS activity in a legume would affect nodule number and function. Here we have transformed alfalfa (Medicago sativa, cv. Regen SY), with a maize SPS gene driven by the constitutive CaMV35S promoter. Our results showed that overexpression of SPS in alfalfa, is accompanied by an increase in nodule number and mass and an overall increase in nitrogenase activity at the whole plant level. The nodules exhibited an increase in the level of key enzymes contributing to N assimilation including glutamine synthetase and asparagine synthetase. Moreover, the stems of the transformants showed higher level of the transport amino acids, Asx, indicating increased export of N from the nodules. The transformants exhibited a dramatic increase in growth both of the shoots and roots, and earlier flowering time, leading to increased yields. Moreover, the transformants showed an increase in elemental N and protein content. The overall conclusion is that increased SPS activity improves the N status and plant performance, suggesting that the availability of more C in the form of sucrose enhances N acquisition and assimilation in the nodules.
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Affiliation(s)
- Sayed Gebril
- Department of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM, 88003, USA
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48
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Molina-Rueda JJ, Kirby EG. Transgenic poplar expressing the pine GS1a show alterations in nitrogen homeostasis during drought. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2015; 94:181-90. [PMID: 26113157 DOI: 10.1016/j.plaphy.2015.06.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Revised: 05/28/2015] [Accepted: 06/08/2015] [Indexed: 05/04/2023]
Abstract
Transgenic hybrid poplars engineered to express ectopically the heterologous pine cytosolic GS1a display a number of significant pleiotropic phenotypes including enhanced growth, enhanced nitrogen use efficiency, and resistance to drought stress. The present study was undertaken in order to assess mechanisms whereby ectopic expression of pine GS1a in transgenic poplars results in enhanced agronomic phenotypes. Microarray analysis using the Agilent Populus whole genome array has allowed identification of genes differentially expressed between wild type (WT) and GS transgenics in four tissues (sink leaves, source leaves, stems, and roots) under three growth conditions (well-watered, drought, and recovery). Analysis revealed that differentially expressed genes in functional categories related to nitrogen metabolism show a trend of significant down-regulation in GS poplars compared to the WT, including genes encoding nitrate and nitrite reductases. The down-regulation of these genes was verified using qPCR, and downstream effects were further tested using NR activity assays. Results suggest that higher glutamine levels in GS transgenics regulate nitrate uptake and reduction. Transcript levels of nitrogen-related genes in leaves, including GS/GOGAT cycle enzymes, aspartate aminotransferase, GABA shunt enzymes, photorespiration enzymes, asparagine synthetase, phenylalanine ammonia lyase, isocitrate dehydrogenase, and PII, were also assessed using qPCR revealing significant differences between GS poplars and the WT. Moreover, metabolites related to these differentially expressed genes showed alterations in levels, including higher levels of GABA, hydroxyproline, and putrescine in the GS transgenic. These alterations in nitrogen homeostasis offer insights into mechanisms accounting for drought tolerance observed in GS poplars.
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Affiliation(s)
| | - Edward G Kirby
- Department of Biological Sciences, Rutgers University, Newark NJ 07102, USA.
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49
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Allwood JW, Chandra S, Xu Y, Dunn WB, Correa E, Hopkins L, Goodacre R, Tobin AK, Bowsher CG. Profiling of spatial metabolite distributions in wheat leaves under normal and nitrate limiting conditions. PHYTOCHEMISTRY 2015; 115:99-111. [PMID: 25680480 PMCID: PMC4518043 DOI: 10.1016/j.phytochem.2015.01.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Revised: 01/10/2015] [Accepted: 01/15/2015] [Indexed: 05/06/2023]
Abstract
The control and interaction between nitrogen and carbon assimilatory pathways is essential in both photosynthetic and non-photosynthetic tissue in order to support metabolic processes without compromising growth. Physiological differences between the basal and mature region of wheat (Triticum aestivum) primary leaves confirmed that there was a change from heterotrophic to autotrophic metabolism. Fourier Transform Infrared (FT-IR) spectroscopy confirmed the suitability and phenotypic reproducibility of the leaf growth conditions. Principal Component-Discriminant Function Analysis (PC-DFA) revealed distinct clustering between base, and tip sections of the developing wheat leaf, and from plants grown in the presence or absence of nitrate. Gas Chromatography-Time of Flight/Mass Spectrometry (GC-TOF/MS) combined with multivariate and univariate analyses, and Bayesian network (BN) analysis, distinguished different tissues and confirmed the physiological switch from high rates of respiration to photosynthesis along the leaf. The operation of nitrogen metabolism impacted on the levels and distribution of amino acids, organic acids and carbohydrates within the wheat leaf. In plants grown in the presence of nitrate there was reduced levels of a number of sugar metabolites in the leaf base and an increase in maltose levels, possibly reflecting an increase in starch turnover. The value of using this combined metabolomics analysis for further functional investigations in the future are discussed.
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Affiliation(s)
- J William Allwood
- School of Chemistry, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK; School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Surya Chandra
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PL, UK
| | - Yun Xu
- School of Chemistry, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK
| | - Warwick B Dunn
- School of Chemistry, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK; Manchester Centre for Integrative Systems Biology, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK; Centre for Advanced Discovery and Experimental Therapeutics (CADET), Central Manchester University Hospitals NHS Foundation Trust, York Place, Oxford Road, Manchester M13 9WL, UK; School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Elon Correa
- School of Chemistry, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK
| | - Laura Hopkins
- School of Biology, Biomolecular Sciences Building, University of St Andrews, St Andrews, Fife, KY16 9ST Scotland, UK
| | - Royston Goodacre
- School of Chemistry, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK; Manchester Centre for Integrative Systems Biology, Manchester Institute of Biotechnology, 131 Princess Street, Manchester M1 7DN, UK
| | - Alyson K Tobin
- Vice Chancellor's Office, York St John University, Lord Mayor's Walk, York YO31 7EX, UK
| | - Caroline G Bowsher
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PL, UK.
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