Using terrestrial laser scanning data to estimate large tropical trees biomass and calibrate allometric models: A comparison with traditional destructive approach

Modeling the horizontal distribution of tree crown biomass from terrestrial laser scanning data

Tree crown biomass is rarely assessed individually in forest monitoring, but when it is to be reported, standard conversion factors are commonly used for predicting crown biomass as a function of stem biomass. Further, in the conventional methods, the predicted total tree biomass is assigned exclusively to the stem position. In reality, however, tree and in particular crown biomass is spatially distributed over the entire crown projection area. In this study, we investigated the "Horizontal Biomass Distribution (HBD)" model, which serves to depict this biomass as a spatial distribution over the crown projection area: here, the individual tree crown biomass is modeled as a continuous distribution within the area defined by the crown projection. We examined two empirical HBD prediction models: (1) Weibull distribution; and (2) Segmented polynomial regression; which describe the biomass contained up to a given crown radius on the horizontal projection of individual trees, i.e., spatial distribution of crown biomass as a function of the horizontal distance from the stem. The approach was demonstrated using terrestrial laser scanning (TLS) on a sample of 33 urban trees from eight species. We found that (1) the segmented polynomial regression model revealed better performance in defining the HBD for various tree species; (2) a certain variability in HBD patterns was observed between the sample trees, with the variability being more pronounced between species groups than within species; and (3) the methodological approaches using TLS proxies are suitable and convenient to non-destructively assess the HBD, which would be otherwise impractical by direct measurements.

Advancing fine branch biomass estimation with lidar and structural models

BACKGROUND AND AIMS

Lidar is a promising tool for fast and accurate measurements of trees. There are several approaches to estimate above-ground woody biomass using lidar point clouds. One of the most widely used methods involves fitting geometric primitives (e.g. cylinders) to the point cloud, thereby reconstructing both the geometry and topology of the tree. However, current algorithms are not suited for accurate estimation of the volume of finer branches, because of the unreliable point dispersions from, for example, beam footprint compared to the structure diameter.

METHOD

We propose a new method that couples point cloud-based skeletonization and multi-linear statistical modelling based on structural data to make a model (structural model) that accurately estimates the above-ground woody biomass of trees from high-quality lidar point clouds, including finer branches. The structural model was tested at segment, axis and branch level, and compared to a cylinder fitting algorithm and to the pipe model theory.

KEY RESULTS

The model accurately predicted the biomass with 1.6 % normalized root mean square error (nRMSE) at the segment scale from a k-fold cross-validation. It also gave satisfactory results when scaled up to the branch level with a significantly lower error (13 % nRMSE) and bias (-5 %) compared to conventional cylinder fitting to the point cloud (nRMSE: 92 %, bias: 82 %), or using the pipe model theory (nRMSE: 31 %, bias: -27 %). The model was then applied to the whole-tree scale and showed that the sampled trees had more than 1.7 km of structures on average and that 96 % of that length was coming from the twigs (i.e. <5 cm diameter). Our results showed that neglecting twigs can lead to a significant underestimation of tree above-ground woody biomass (-21 %).

CONCLUSIONS

The structural model approach is an effective method that allows a more accurate estimation of the volumes of smaller branches from lidar point clouds. This method is versatile but requires manual measurements on branches for calibration. Nevertheless, once the model is calibrated, it can provide unbiased and large-scale estimations of tree structure volumes, making it an excellent choice for accurate 3D reconstruction of trees and estimating standing biomass.

Terrestrial LiDAR point cloud dataset of cocoa trees grown in agroforestry systems in Cameroon

This paper presents a dataset aimed at characterizing cocoa trees cultivated within complex agroforestry systems managed by smallholder farmers in the Central region of Cameroon. The dataset highlights the architectural structure of the trees as well as the distribution of their leaves and wood using 3D point clouds obtained through the Leica ScanStation C10 terrestrial LiDAR. The data collection campaign was conducted in August 2019 in the district of Bokito (latitude 4°34' N and longitude 11°07' E), specifically within the village of Yorro located in a transition zone between forest and savannah. The dataset includes information on 55 cocoa trees, spread over five distinct architectural types. These trees were sampled from various age stands ranging from 5- to 70-year-old. For 29 of these trees, a leaf/wood segmentation of the point clouds was performed. For each of these trees, the dataset comprises the raw point cloud of the entire tree, as well as separate point clouds for the leaves and wood, each in two distinct sets of 3D points. The data provides the foundation for conducting numerous cocoa tree measurements based on their representation in point clouds, allowing for a more comprehensive understanding of their architecture, photosynthetic capacity, and distribution of above-ground biomass.

Determinants of growth and carbon accumulation of common plantation tree species in the three northern regions, China: Responses to climate and management strategies

The Three-North (Northwest, North and Northeast) Shelter Forests Program (TNSFP) in China has effectively promoted vegetation growth and carbon sink in the temperate semi-humid and semi-arid regions. To compare the afforestation benefits of commonly used tree species in the area and explore the effect of environment on growth and carbon accumulation in plantations, backpack LiDAR was used to acquire 3 dimensional lidar point clouds of forests from a total of 480 pure plantation patches consisting of Pinus sylvestris (P.s.), Pinus tabuliformis (P.t.), Populus spp. (Pop.), and Robinia pseudoacacia (R.p.). Then, diameter at breast height (DBH), forest height, canopy coverage, and aboveground carbon accumulation were calculated for each plantation patches, which ranged from 7.0 to 37.3 cm, 1.5-14.5 m, 10-99 % and 4.2-205.9 Mg/ha, respectively. Generalized linear mixed-effect models and ANOVA were applied to account for the environmental constraints on the variations of forest parameters. Results showed that precipitation had a stronger effect on all the above parameters of plantations than temperature, and P.t. was more sensitive to climate than other three species. With regard to forest management in Pop. plantations, thinning could improve afforestation efficiency because carbon accumulation would reduce after the age exceeds 30 years. In contrast, P.s. populations maintained a continuous increase in carbon accumulation at least before 40 years old, while the radial growth of canopy became saturated after 12 years of age. The optimal planting density for P.s. and Pop. are about 1000 trees/ha, beyond which the increase in carbon accumulation will slow down or change rate of canopy coverage will be insignificant. Within the TNSFP area, P.t. and R.p. plantations would be more suitable in southern regions, while P.s. and Pop. plantations grow better in the northeastern regions. Meanwhile, mountains along the "Hu Line" showed high potential for growth and carbon accumulation for all tree species examined.

Towards 3D basic theories of plant forms

Allometric, metabolic, and biomechanical theories are the critical foundations for scientifically deciphering plant forms. Their concrete laws, however, are found to deviate for plenty of plant specimens. This phenomenon has not been extensively studied, due to technical restrictions. This bottleneck now can be overcome by the state-of-the-art three-dimensional (3D) mapping technologies, such as fine-scale terrestrial laser scanning. On these grounds, we proposed to reexamine the basic theories regarding plant forms, and then, we case validated the feasibility of upgrading them into 3D modes. As an in-time enlightening of 3D revolutionizing the related basic subject, our theoretical prospect further sorted out the potential challenges as the cutting points for advancing its future exploration, which may enable 3D reconstruction of the basic theories of plant forms and even boost life science.

In this Perspective, the authors discuss how state-of-the-art three-dimensional mapping technologies such as fine-scale terrestrial laser scanning can help us understand the theories of plant forms.

A Conventional Cruise and Felled-Tree Validation of Individual Tree Diameter, Height and Volume Derived from Airborne Laser Scanning Data of a Loblolly Pine (P. taeda) Stand in Eastern Texas

Globally, remotely sensed data and, in particular, Airborne Laser Scanning (ALS), are being assessed by the forestry industry for their ability to acquire accurate forest inventories at an individual-tree level. This pilot study compares an inventory derived using the ForestView® biometrics analysis system to traditional cruise measurements and felled tree measurements for 139 Pinus taeda sp. (loblolly pine) trees in eastern Texas. The Individual Tree Detection (ITD) accuracy of ForestView® was 97.1%. In terms of tree height accuracy, ForestView® results had an overall lower mean bias and RMSE than the traditional cruise techniques when both datasets were compared to the felled tree data (LiDAR: mean bias = 1.1 cm, RMSE = 41.2 cm; Cruise: mean bias = 13.8 cm, RMSE = 57.5 cm). No significant difference in mean tree height was observed between the felled tree, cruise, and LiDAR measurements (p-value = 0.58). ForestView-derived DBH exhibited a −2.1 cm bias compared to felled-tree measurements. This study demonstrates the utility of this newly emerging ITD software as an approach to characterize forest structure on similar coniferous forests landscapes.

An Effective Method for InSAR Mapping of Tropical Forest Degradation in Hilly Areas

Current satellite remote sensing methods struggle to detect and map forest degradation, which is a critical issue as it is likely a major and growing source of carbon emissions and biodiveristy loss. TanDEM-X InSAR phase height (hϕ) is a promising variable for measuring forest disturbances, as it is closely related to the mean canopy height, and thus should decrease if canopy trees are removed. However, previous research has focused on relatively flat terrains, despite the fact that much of the world’s remaining tropical forests are found in hilly areas, and this inevitably introduces artifacts in sideways imaging systems. In this paper, we find a relationship between hϕ and aboveground biomass change in four selectively logged plots in a hilly region of central Gabon. We show that minimising multilooking prior to the calculation of hϕ strengthens this relationship, and that degradation estimates across steep slopes in the surrounding region are improved by selecting data from the most appropriate pass directions on a pixel-by-pixel basis. This shows that TanDEM-X InSAR can measure the magnitude of degradation, and that topographic effects can be mitigated if data from multiple SAR viewing geometries are available.

TLSLeAF: automatic leaf angle estimates from single-scan terrestrial laser scanning

Leaf angle distribution (LAD) in forest canopies affects estimates of leaf area, light interception, and global-scale photosynthesis, but is often simplified to a single theoretical value. Here, we present TLSLeAF (Terrestrial Laser Scanning Leaf Angle Function), an automated open-source method of deriving LADs from terrestrial laser scanning. TLSLeAF produces canopy-scale leaf angle and LADs by relying on gridded laser scanning data. The approach increases processing speed, improves angle estimates, and requires minimal user input. Key features are automation, leaf-wood classification, beta parameter output, and implementation in R to increase accessibility for the ecology community. TLSLeAF precisely estimates leaf angle with minimal distance effects on angular estimates while rapidly producing LADs on a consumer-grade machine. We challenge the popular spherical LAD assumption, showing sensitivity to ecosystem type in plant area index and foliage profile estimates that translate to c. 25% and c. 11% increases in canopy net photosynthesis (c. 25%) and solar-induced chlorophyll fluorescence (c. 11%). TLSLeAF can now be applied to the vast catalog of laser scanning data already available from ecosystems around the globe. The ease of use will enable widespread adoption of the method outside of remote-sensing experts, allowing greater accessibility for addressing ecological hypotheses and large-scale ecosystem modeling efforts.

Forest above-ground volume assessments with terrestrial laser scanning: a ground-truth validation experiment in temperate, managed forests

BACKGROUND AND AIMS

Quantifying the Earth's forest above-ground biomass (AGB) is indispensable for effective climate action and developing forest policy. Yet, current allometric scaling models (ASMs) to estimate AGB suffer several drawbacks related to model selection and uncertainties about calibration data traceability. Terrestrial laser scanning (TLS) offers a promising non-destructive alternative. Tree volume is reconstructed from TLS point clouds with quantitative structure models (QSMs) and converted to AGB with wood basic density. Earlier studies have found overall TLS-derived forest volume estimates to be accurate, but highlighted problems for reconstructing finer branches. Our objective was to evaluate TLS for estimating tree volumes by comparison with reference volumes and volumes from ASMs.

METHODS

We quantified the woody volume of 65 trees in Belgium (from 77 to 2800 L; Pinus sylvestris, Fagus sylvatica, Larix decidua, and Fraxinus excelsior) with QSMs and destructive reference measurements. We tested a volume expansion factor (VEF) approach by multiplying the solid and merchantable volume from QSMs by literature VEF values.

KEY RESULTS

Stem volume was reliably estimated with TLS. Total volume was overestimated by +21 % using original QSMs, by +9 % and -12 % using two sets of VEF-augmented QSMs, and by -7.3 % using best-available ASMs. The most accurate method differed per site, and the prediction errors for each method varied considerably between sites.

CONCLUSIONS

VEF-augmented QSMs were only slightly better than original QSMs for estimating tree volume for common species in temperate forests. Despite satisfying estimates with ASMs, the model choice was a large source of uncertainty, and species-specific models did not always exist. Therefore, we advocate for further improving tree volume reconstructions with QSMs, especially for fine branches, instead of collecting more ground-truth data to calibrate VEF and allometric models. Promising developments such as improved co-registration and smarter filtering approaches are ongoing to further constrain volumetric errors in TLS-derived estimates.

Evaluation of automated pipelines for tree and plot metric estimation from TLS data in tropical forest areas

BACKGROUND AND AIMS

Terrestrial LiDAR scanning (TLS) data are of great interest in forest ecology and management because they provide detailed 3-D information on tree structure. Automated pipelines are increasingly used to process TLS data and extract various tree- and plot-level metrics. With these developments comes the risk of unknown reliability due to an absence of systematic output control. In the present study, we evaluated the estimation errors of various metrics, such as wood volume, at tree and plot levels for four automated pipelines.

METHODS

We used TLS data collected from a 1-ha plot of tropical forest, from which 391 trees >10 cm in diameter were fully processed using human assistance to obtain control data for tree- and plot-level metrics.

KEY RESULTS

Our results showed that fully automated pipelines led to median relative errors in the quantitative structural model (QSM) volume ranging from 39 to 115 % at the tree level and 10 to 134 % at the 1-ha plot level. For tree-level metrics, the median error for the crown-projected area ranged from 46 to 59 % and that for the crown-hull volume varied from 72 to 88 %. This result suggests that the tree isolation step is the weak link in automated pipeline methods. We further analysed how human assistance with automated pipelines can help reduce the error in the final QSM volume. At the tree scale, we found that isolating trees using human assistance reduced the error in wood volume by a factor of 10. At the 1-ha plot scale, locating trees with human assistance reduced the error by a factor of 3.

CONCLUSIONS

Our results suggest that in complex tropical forests, fully automated pipelines may provide relatively unreliable metrics at the tree and plot levels, but limited human assistance inputs can significantly reduce errors.

A new method to estimate branch biomass from terrestrial laser scanning data by bridging tree structure models

BACKGROUND AND AIMS

Branch biomass and other attributes are important for estimating the carbon budget of forest stands and characterizing crown structure. As destructive measuring is time-consuming and labour-intensive, terrestrial laser scanning (TLS) as a solution has been used to estimate branch biomass quickly and non-destructively. However, branch information extraction from TLS data alone is challenging due to occlusion and other defects, especially for estimating individual branch attributes in coniferous trees.

METHODS

This study presents a method, entitled TSMtls, to estimate individual branch biomass non-destructively and accurately by combining tree structure models and TLS data. The TSMtls method constructs the stem-taper curve from TLS data, then uses tree structure models to determine the number, basal area and biomass of individual branches at whorl level. We estimated the tree structural model parameters from 122 destructively measured Scots pine (Pinus sylvestris) trees and tested the method on six Scots pine trees that were first TLS-scanned and later destructively measured. Additionally, we estimated the branch biomass using other TLS-based approaches for comparison.

KEY RESULTS

Tree-level branch biomass estimates derived from TSMtls showed the best agreement with the destructive measurements [coefficient of variation of root mean square error (CV-RMSE) = 9.66 % and concordance correlation coefficient (CCC) = 0.99], outperforming the other TLS-based approaches (CV-RMSE 12.97-57.45 % and CCC 0.43-0.98 ). Whorl-level individual branch attributes estimates produced from TSMtls showed more accurate results than those produced from TLS data directly.

CONCLUSIONS

The results showed that the TSMtls method proposed in this study holds promise for extension to more species and larger areas.

Reliable Estimates of Merchantable Timber Volume from Terrestrial Laser Scanning

Simple and accurate determination of merchantable tree height is needed for accurate estimations of merchantable volume. Conventional field methods of forest inventory can lead to biased estimates of tree height and diameter, especially in complex forest structures. Terrestrial laser scanner (TLS) data can be used to determine merchantable height and diameter at different heights with high accuracy and detail. This study focuses on the use of the random sampling consensus method (RANSAC) for generating the length and diameter of logs to estimate merchantable volume at the tree level using Huber’s formula. For this study, we used two plots; plot A contained deciduous trees and plot B consisted of conifers. Our results demonstrated that the TLS-based outputs for stem modelling using the RANSAC method performed very well with low bias (0.02 for deciduous and 0.01 for conifers) and a high degree of accuracy (97.73% for deciduous and 96.14% for conifers). We also found a high correlation between the proposed method and log length (−0.814 for plot A and −0.698 for plot B), which is an important finding because this information can be used to determine the optimum log properties required for analyzing stem curvature changes at different heights. Furthermore, the results of this study provide insight into the applicability and ergonomics during data collection from forest inventories solely from terrestrial laser scanning, thus reducing the need for field reference data.

Low Cost Automatic Reconstruction of Tree Structure by AdQSM with Terrestrial Close-Range Photogrammetry

The quantitative structure model (QSM) contains the branch geometry and attributes of the tree. AdQSM is a new, accurate, and detailed tree QSM. In this paper, an automatic modeling method based on AdQSM is developed, and a low-cost technical scheme of tree structure modeling is provided, so that AdQSM can be freely used by more people. First, we used two digital cameras to collect two-dimensional (2D) photos of trees and generated three-dimensional (3D) point clouds of plot and segmented individual tree from the plot point clouds. Then a new QSM-AdQSM was used to construct tree model from point clouds of 44 trees. Finally, to verify the effectiveness of our method, the diameter at breast height (DBH), tree height, and trunk volume were derived from the reconstructed tree model. These parameters extracted from AdQSM were compared with the reference values from forest inventory. For the DBH, the relative bias (rBias), root mean square error (RMSE), and coefficient of variation of root mean square error (rRMSE) were 4.26%, 1.93 cm, and 6.60%. For the tree height, the rBias, RMSE, and rRMSE were—10.86%, 1.67 m, and 12.34%. The determination coefficient (R2) of DBH and tree height estimated by AdQSM and the reference value were 0.94 and 0.86. We used the trunk volume calculated by the allometric equation as a reference value to test the accuracy of AdQSM. The trunk volume was estimated based on AdQSM, and its bias was 0.07066 m3, rBias was 18.73%, RMSE was 0.12369 m3, rRMSE was 32.78%. To better evaluate the accuracy of QSM’s reconstruction of the trunk volume, we compared AdQSM and TreeQSM in the same dataset. The bias of the trunk volume estimated based on TreeQSM was −0.05071 m3, and the rBias was −13.44%, RMSE was 0.13267 m3, rRMSE was 35.16%. At 95% confidence interval level, the concordance correlation coefficient (CCC = 0.77) of the agreement between the estimated tree trunk volume of AdQSM and the reference value was greater than that of TreeQSM (CCC = 0.60). The significance of this research is as follows: (1) The automatic modeling method based on AdQSM is developed, which expands the application scope of AdQSM; (2) provide low-cost photogrammetric point cloud as the input data of AdQSM; (3) explore the potential of AdQSM to reconstruct forest terrestrial photogrammetric point clouds.

Tackling unresolved questions in forest ecology: The past and future role of simulation models

Understanding the processes that shape forest functioning, structure, and diversity remains challenging, although data on forest systems are being collected at a rapid pace and across scales. Forest models have a long history in bridging data with ecological knowledge and can simulate forest dynamics over spatio-temporal scales unreachable by most empirical investigations.We describe the development that different forest modelling communities have followed to underpin the leverage that simulation models offer for advancing our understanding of forest ecosystems.Using three widely applied but contrasting approaches - species distribution models, individual-based forest models, and dynamic global vegetation models - as examples, we show how scientific and technical advances have led models to transgress their initial objectives and limitations. We provide an overview of recent model applications on current important ecological topics and pinpoint ten key questions that could, and should, be tackled with forest models in the next decade.Synthesis. This overview shows that forest models, due to their complementarity and mutual enrichment, represent an invaluable toolkit to address a wide range of fundamental and applied ecological questions, hence fostering a deeper understanding of forest dynamics in the context of global change.

LiDAR Applications to Estimate Forest Biomass at Individual Tree Scale: Opportunities, Challenges and Future Perspectives

Accurate forest biomass estimation at the individual tree scale is the foundation of timber industry and forest management. It plays an important role in explaining ecological issues and small-scale processes. Remotely sensed images, across a range of spatial and temporal resolutions, with their advantages of non-destructive monitoring, are widely applied in forest biomass monitoring at global, ecoregion or community scales. However, the development of remote sensing applications for forest biomass at the individual tree scale has been relatively slow due to the constraints of spatial resolution and evaluation accuracy of remotely sensed data. With the improvements in platforms and spatial resolutions, as well as the development of remote sensing techniques, the potential for forest biomass estimation at the single tree level has been demonstrated. However, a comprehensive review of remote sensing of forest biomass scaled at individual trees has not been done. This review highlights the theoretical bases, challenges and future perspectives for Light Detection and Ranging (LiDAR) applications of individual trees scaled to whole forests. We summarize research on estimating individual tree volume and aboveground biomass (AGB) using Terrestrial Laser Scanning (TLS), Airborne Laser Scanning (ALS), Unmanned Aerial Vehicle Laser Scanning (UAV-LS) and Mobile Laser Scanning (MLS, including Vehicle-borne Laser Scanning (VLS) and Backpack Laser Scanning (BLS)) data.

New insights into large tropical tree mass and structure from direct harvest and terrestrial lidar

A large portion of the terrestrial vegetation carbon stock is stored in the above-ground biomass (AGB) of tropical forests, but the exact amount remains uncertain, partly owing to the lack of measurements. To date, accessible peer-reviewed data are available for just 10 large tropical trees in the Amazon that have been harvested and directly measured entirely via weighing. Here, we harvested four large tropical rainforest trees (stem diameter: 0.6-1.2 m, height: 30-46 m, AGB: 3960-18 584 kg) in intact old-growth forest in East Amazonia, and measured above-ground green mass, moisture content and woody tissue density. We first present rare ecological insights provided by these data, including unsystematic intra-tree variations in density, with both height and radius. We also found the majority of AGB was usually found in the crown, but varied from 42 to 62%. We then compare non-destructive approaches for estimating the AGB of these trees, using both classical allometry and new lidar-based methods. Terrestrial lidar point clouds were collected pre-harvest, on which we fitted cylinders to model woody structure, enabling retrieval of volume-derived AGB. Estimates from this approach were more accurate than allometric counterparts (mean tree-scale relative error: 3% versus 15%), and error decreased when up-scaling to the cumulative AGB of the four trees (1% versus 15%). Furthermore, while allometric error increased fourfold with tree size over the diameter range, lidar error remained constant. This suggests error in these lidar-derived estimates is random and additive. Were these results transferable across forest scenes, terrestrial lidar methods would reduce uncertainty in stand-scale AGB estimates, and therefore advance our understanding of the role of tropical forests in the global carbon cycle.

New 3D measurements of large redwood trees for biomass and structure

Large trees are disproportionately important in terms of their above ground biomass (AGB) and carbon storage, as well as their wider impact on ecosystem structure. They are also very hard to measure and so tend to be underrepresented in measurements and models of AGB. We show the first detailed 3D terrestrial laser scanning (TLS) estimates of the volume and AGB of large coastal redwood Sequoia sempervirens trees from three sites in Northern California, representing some of the highest biomass ecosystems on Earth. Our TLS estimates agree to within 2% AGB with a species-specific model based on detailed manual crown mapping of 3D tree structure. However TLS-derived AGB was more than 30% higher compared to widely-used general (non species-specific) allometries. We derive an allometry from TLS that spans a much greater range of tree size than previous models and so is potentially better-suited for use with new Earth Observation data for these exceptionally high biomass areas. We suggest that where possible, TLS and crown mapping should be used to provide complementary, independent 3D structure measurements of these very large trees.

AdQSM: A New Method for Estimating Above-Ground Biomass from TLS Point Clouds

Forest above-ground biomass (AGB) can be estimated based on light detection and ranging (LiDAR) point clouds. This paper introduces an accurate and detailed quantitative structure model (AdQSM), which can estimate the AGB of large tropical trees. AdQSM is based on the reconstruction of 3D tree models from terrestrial laser scanning (TLS) point clouds. It represents a tree as a set of closed and complete convex polyhedra. We use AdQSM to model 29 trees of various species (total 18 species) scanned by TLS from three study sites (the dense tropical forests of Peru, Indonesia, and Guyana). The destructively sampled tree geometry measurement data is used as reference values to evaluate the accuracy of diameter at breast height (DBH), tree height, tree volume, branch volume, and AGB estimated from AdQSM. After AdQSM reconstructs the structure and volume of each tree, AGB is derived by combining the wood density of the specific tree species from destructive sampling. The AGB estimation from AdQSM and the post-harvest reference measurement data show a satisfying agreement. The coefficient of variation of root mean square error (CV-RMSE) and the concordance correlation coefficient (CCC) are 20.37% and 0.97, respectively. AdQSM provides accurate tree volume estimation, regardless of the characteristics of the tree structure, without major systematic deviations. We compared the accuracy of AdQSM and TreeQSM in modeling the volume of 29 trees. The tree volume from AdQSM is compared with the reference value, and the determination coefficient (R2), relative bias (rBias), and CV-RMSE of tree volume are 0.96, 6.98%, and 22.62%, respectively. The tree volume from TreeQSM is compared with the reference value, and the R2, relative Bias (rBias), and CV-RMSE of tree volume are 0.94, −9.69%, and 23.20%, respectively. The CCCs between the volume estimates based on AdQSM, TreeQSM, and the reference values are 0.97 and 0.96. AdQSM also models the branches in detail. The volume of branches from AdQSM is compared with the destructive measurement reference data. The R2, rBias, and CV-RMSE of the branches volume are 0.97, 12.38%, and 36.86%, respectively. The DBH and height of the harvested trees were used as reference values to test the accuracy of AdQSM’s estimation of DBH and tree height. The R2, rBias, and CV-RMSE of DBH are 0.94, −5.01%, and 9.06%, respectively. The R2, rBias, and CV-RMSE of the tree height were 0.95, 1.88%, and 5.79%, respectively. This paper provides not only a new QSM method for estimating AGB based on TLS point clouds but also the potential for further development and testing of allometric equations.

A New Quantitative Approach to Tree Attributes Estimation Based on LiDAR Point Clouds

Tree-level information can be estimated based on light detection and ranging (LiDAR) point clouds. We propose to develop a quantitative structural model based on terrestrial laser scanning (TLS) point clouds to automatically and accurately estimate tree attributes and to detect real trees for the first time. This model is suitable for forest research where branches are involved in the calculation. First, the Adtree method was used to approximate the geometry of the tree stem and branches by fitting a series of cylinders. Trees were represented as a broad set of cylinders. Then, the end of the stem or all branches were closed. The tree model changed from a cylinder to a closed convex hull polyhedron, which was to reconstruct a 3D model of the tree. Finally, to extract effective tree attributes from the reconstructed 3D model, a convex hull polyhedron calculation method based on the tree model was defined. This calculation method can be used to extract wood (including tree stem and branches) volume, diameter at breast height (DBH) and tree height. To verify the accuracy of tree attributes extracted from the model, the tree models of 153 Chinese scholartrees from TLS data were reconstructed and the tree volume, DBH and tree height were extracted from the model. The experimental results show that the DBH and tree height extracted based on this model are in better consistency with the reference value based on field survey data. The bias, RMSE and R2 of DBH were 0.38 cm, 1.28 cm and 0.92, respectively. The bias, RMSE and R2 of tree height were −0.76 m, 1.21 m and 0.93, respectively. The tree volume extracted from the model is in better consistency with the reference value. The bias, root mean square error (RMSE) and determination coefficient (R2) of tree volume were −0.01236 m3, 0.03498 m3 and 0.96, respectively. This study provides a new model for nondestructive estimation of tree volume, above-ground biomass (AGB) or carbon stock based on LiDAR data.

Integration of Multi-Sensor Data to Estimate Plot-Level Stem Volume Using Machine Learning Algorithms–Case Study of Evergreen Conifer Planted Forests in Japan

The development of new methods for estimating precise forest structure parameters is essential for the quantitative evaluation of forest resources. Conventional use of satellite image data, increasing use of terrestrial laser scanning (TLS), and emerging trends in the use of unmanned aerial systems (UASs) highlight the importance of modern technologies in the realm of forest observation. Each technology has different advantages, and this work seeks to incorporate multiple satellite, TLS- and UAS-based remote sensing data sets to improve the ability to estimate forest structure parameters. In this paper, two regression analysis approaches are considered for the estimation: random forest regression (RFR) and support vector regression (SVR). To collect the dependent variable, in situ measurements of individual tree parameters (tree height and diameter at breast height (DBH)) were taken in a Japanese cypress forest using the nondestructive TLS method, which scans the forest to obtain dense and accurate point clouds under the tree canopy. Based on the TLS data, the stem volume was then computed and treated as ground truth information. Topographic and UAS information was then used to calculate various remotely sensed explanatory variables, such as canopy size, canopy cover, and tree height. Canopy cover and canopy shapes were computed via the orthoimages derived from the UAS and watershed segmentation method, respectively. Tree height was computed by combining the digital surface model (DSM) from the UAS and the digital terrain model (DTM) from the TLS data. Topographic variables were computed from the DTM. The backscattering intensity in the satellite imagery was obtained based on L-band (Advanced Land Observing Satellite-2 (ALOS-2) Phased Array type L-band Synthetic Aperture Radar-2 (PALSAR-2)) and C-band (Sentinel-1) synthetic aperture radar (SAR). All satellite (10–25 m resolution), TLS (3.4 mm resolution) and UAS (2.3–4.6 cm resolution) data were then combined, and RFR and SVR were trained; the resulting predictive powers were then compared. The RFR method yielded fitting R2 up to 0.665 and RMSE up to 66.87 m3/ha (rRMSE = 11.95%) depending on the input variables (best result with canopy height, canopy size, canopy cover, and Sentinel-1 data), and the SVR method showed fitting R2 up to 0.519 and RMSE up to 80.12 m3/ha (rRMSE = 12.67%). The RFR outperformed the SVR method, which could delineate the relationship between the variables for better model accuracy. This work has demonstrated that incorporating various remote sensing data to satellite data, especially adding finer resolution data, can provide good estimates of forest parameters at a plot level (10 by 10 m), potentially allowing advancements in precision forestry.

Non-destructive estimation of field maize biomass using terrestrial lidar: an evaluation from plot level to individual leaf level

BACKGROUND

Precision agriculture is an emerging research field that relies on monitoring and managing field variability in phenotypic traits. An important phenotypic trait is biomass, a comprehensive indicator that can reflect crop yields. However, non-destructive biomass estimation at fine levels is unknown and challenging due to the lack of accurate and high-throughput phenotypic data and algorithms.

RESULTS

In this study, we evaluated the capability of terrestrial light detection and ranging (lidar) data in estimating field maize biomass at the plot, individual plant, leaf group, and individual organ (i.e., individual leaf or stem) levels. The terrestrial lidar data of 59 maize plots with more than 1000 maize plants were collected and used to calculate phenotypes through a deep learning-based pipeline, which were then used to predict maize biomass through simple regression (SR), stepwise multiple regression (SMR), artificial neural network (ANN), and random forest (RF). The results showed that terrestrial lidar data were useful for estimating maize biomass at all levels (at each level, R² was greater than 0.80), and biomass estimation at leaf group level was the most precise (R² = 0.97, RMSE = 2.22 g) among all four levels. All four regression techniques performed similarly at all levels. However, considering the transferability and interpretability of the model itself, SR is the suggested method for estimating maize biomass from terrestrial lidar-derived phenotypes. Moreover, height-related variables showed to be the most important and robust variables for predicting maize biomass from terrestrial lidar at all levels, and some two-dimensional variables (e.g., leaf area) and three-dimensional variables (e.g., volume) showed great potential as well.

CONCLUSION

We believe that this study is a unique effort on evaluating the capability of terrestrial lidar on estimating maize biomass at difference levels, and can provide a useful resource for the selection of the phenotypes and models required to estimate maize biomass in precision agriculture practices.

Leveraging Signatures of Plant Functional Strategies in Wood Density Profiles of African Trees to Correct Mass Estimations From Terrestrial Laser Data

Wood density (WD) relates to important tree functions such as stem mechanics and resistance against pathogens. This functional trait can exhibit high intraindividual variability both radially and vertically. With the rise of LiDAR-based methodologies allowing nondestructive tree volume estimations, failing to account for WD variations related to tree function and biomass investment strategies may lead to large systematic bias in AGB estimations. Here, we use a unique destructive dataset from 822 trees belonging to 51 phylogenetically dispersed tree species harvested across forest types in Central Africa to determine vertical gradients in WD from the stump to the branch tips, how these gradients relate to regeneration guilds and their implications for AGB estimations. We find that decreasing WD from the tree base to the branch tips is characteristic of shade-tolerant species, while light-demanding and pioneer species exhibit stationary or increasing vertical trends. Across all species, the WD range is narrower in tree crowns than at the tree base, reflecting more similar physiological and mechanical constraints in the canopy. Vertical gradients in WD induce significant bias (10%) in AGB estimates when using database-derived species-average WD data. However, the correlation between the vertical gradients and basal WD allows the derivation of general correction models. With the ongoing development of remote sensing products providing 3D information for entire trees and forest stands, our findings indicate promising ways to improve greenhouse gas accounting in tropical countries and advance our understanding of adaptive strategies allowing trees to grow and survive in dense rainforests.

Understanding Tree-to-Tree Variations in Stone Pine (Pinus pinea L.) Cone Production Using Terrestrial Laser Scanner

Kernels found in stone pinecones are of great economic value, often surpassing timber income for most forest owners. Visually evaluating cone production on standing trees is challenging since the cones are located in the sun-exposed part of the crown, and covered by two vegetative shoots. Very few studies were carried out in evaluating how new remote sensing technologies such as terrestrial laser scanners (TLS) can be used in assessing cone production, or in trying to explain the tree-to-tree variability within a given stand. Using data from 129 trees in 26 plots located in the Spanish Northern Plateau, the gain observed by using TLS data when compared to traditional inventory data in predicting the presence, the number, and the average weight of the cones in an individual tree was evaluated. The models using TLS-derived metrics consistently showed better fit statistics, when compared to models using traditional inventory data pertaining to site and tree levels. Crown dimensions such as projected crown area and crown volume, crown density, and crown asymmetry were the key TLS-derived drivers in understanding the variability in inter-tree cone production. These results underline the importance of crown characteristics in assessing cone production in stone pine. Moreover, as cone production (number of cones and average weight) is higher in crowns with lower density, the use of crown pruning, abandoned over 30 years ago, might be the key to increasing production in combination with stand density management.

Nondestructive Estimation of the Above-Ground Biomass of Multiple Tree Species in Boreal Forests of China Using Terrestrial Laser Scanning

Above-ground biomass (AGB) plays a pivotal role in assessing a forest’s resource dynamics, ecological value, carbon storage, and climate change effects. The traditional methods of AGB measurement are destructive, time consuming and laborious, and an efficient, relatively accurate and non-destructive AGB measurement method will provide an effective supplement for biomass calculation. Based on the real biophysical and morphological structures of trees, this paper adopted a non-destructive method based on terrestrial laser scanning (TLS) point cloud data to estimate the AGBs of multiple common tree species in boreal forests of China, and the effects of differences in bark roughness and trunk curvature on the estimation of the diameter at breast height (DBH) from TLS data were quantitatively analyzed. We optimized the quantitative structure model (QSM) algorithm based on 100 trees of multiple tree species, and then used it to estimate the volume of trees directly from the tree model reconstructed from point cloud data, and to calculate the AGBs of trees by using specific basic wood density values. Our results showed that the total DBH and tree height from the TLS data showed a good consistency with the measured data, since the bias, root mean square error (RMSE) and determination coefficient (R2) of the total DBH were −0.8 cm, 1.2 cm and 0.97, respectively. At the same time, the bias, RMSE and determination coefficient of the tree height were −0.4 m, 1.3 m and 0.90, respectively. The differences of bark roughness and trunk curvature had a small effect on DBH estimation from point cloud data. The AGB estimates from the TLS data showed strong agreement with the reference values, with the RMSE, coefficient of variation of root mean square error (CV(RMSE)), and concordance correlation coefficient (CCC) values of 17.4 kg, 13.6% and 0.97, respectively, indicating that this non-destructive method can accurately estimate tree AGBs and effectively calibrate new allometric biomass models. We believe that the results of this study will benefit forest managers in formulating management measures and accurately calculating the economic and ecological benefits of forests, and should promote the use of non-destructive methods to measure AGB of trees in China.

Improving plant allometry by fusing forest models and remote sensing

Allometry determines how tree shape and function scale with each other, related through size. Allometric relationships help scale processes from the individual to the global scale and constitute a core component of vegetation models. Allometric relationships have been expected to emerge from optimisation theory, yet this does not suitably predict empirical data. Here we argue that the fusion of high-resolution data, such as those derived from airborne laser scanning, with individual-based forest modelling offers insight into how plant size contributes to large-scale biogeochemical processes. We review the challenges in allometric scaling, how they can be tackled by advances in data-model fusion, and how individual-based models can serve as data integrators for dynamic global vegetation models.

Accounting for Wood, Foliage Properties, and Laser Effective Footprint in Estimations of Leaf Area Density from Multiview-LiDAR Data

The spatial distribution of Leaf Area Density (LAD) in a tree canopy has fundamental functions in ecosystems. It can be measured through a variety of methods, including voxel-based methods applied to LiDAR point clouds. A theoretical study recently compared the numerical errors of these methods and showed that the bias-corrected Maximum Likelihood Estimator was the most efficient. However, it ignored (i) wood volumes, (ii) vegetation sub-grid clumping, (iii) the instrument effective footprint, and (iv) was limited to a single viewpoint. In practice, retrieving LAD is not straightforward, because vegetation is not randomly distributed in sub-grids, beams are divergent, and forestry plots are sampled from more than one viewpoint to mitigate occlusion. In the present article, we extend the previous formulation to (i) account for both wood volumes and hits, (ii) rigorously include correction terms for vegetation and instrument characteristics, and (iii) integrate multiview data. Two numerical experiments showed that the new approach entailed reduction of bias and errors, especially in the presence of wood volumes or when multiview data are available for poorly-explored volumes. In addition to its conciseness, completeness, and efficiency, this new formulation can be applied to multiview TLS—and also potentially to UAV LiDAR scanning—to reduce errors in LAD estimation.

Tree Biomass Equations from Terrestrial LiDAR: A Case Study in Guyana

Large uncertainties in tree and forest carbon estimates weaken national efforts to accurately estimate aboveground biomass (AGB) for their national monitoring, measurement, reporting and verification system. Allometric equations to estimate biomass have improved, but remain limited. They rely on destructive sampling; large trees are under-represented in the data used to create them; and they cannot always be applied to different regions. These factors lead to uncertainties and systematic errors in biomass estimations. We developed allometric models to estimate tree AGB in Guyana. These models were based on tree attributes (diameter, height, crown diameter) obtained from terrestrial laser scanning (TLS) point clouds from 72 tropical trees and wood density. We validated our methods and models with data from 26 additional destructively harvested trees. We found that our best TLS-derived allometric models included crown diameter, provided more accurate AGB estimates ( R 2 = 0.92–0.93) than traditional pantropical models ( R 2 = 0.85–0.89), and were especially accurate for large trees (diameter > 70 cm). The assessed pantropical models underestimated AGB by 4 to 13%. Nevertheless, one pantropical model (Chave et al. 2005 without height) consistently performed best among the pantropical models tested ( R 2 = 0.89) and predicted AGB accurately across all size classes—which but for this could not be known without destructive or TLS-derived validation data. Our methods also demonstrate that tree height is difficult to measure in situ, and the inclusion of height in allometric models consistently worsened AGB estimates. We determined that TLS-derived AGB estimates were unbiased. Our approach advances methods to be able to develop, test, and choose allometric models without the need to harvest trees.

Terrestrial LiDAR: a three-dimensional revolution in how we look at trees

Contents Summary I. Introduction II. Terrestrial laser scanning III. Turning points into trees IV. Current and future applications of TLS V. Conclusions Acknowledgements References SUMMARY: Terrestrial laser scanning (TLS) is providing new, very detailed three-dimensional (3D) measurements of forest canopy structure. The information that TLS measurements can provide in describing detailed, accurate 3D canopy architecture offers fascinating new insights into the variety of tree form, environmental drivers and constraints, and the relationship between form and function, particularly for tall, hard-to-measure trees. TLS measurements are helping to test fundamental ecological theories and enabling new and better exploitation of other measurements and models that depend on 3D structural information. This Tansley insight introduces the background and capabilities of TLS in forest ecology, discusses some of the barriers to progress, and identifies some of the directions for new work.

New Opportunities for Forest Remote Sensing Through Ultra-High-Density Drone Lidar

Current and planned space missions will produce aboveground biomass density data products at varying spatial resolution. Calibration and validation of these data products is critically dependent on the existence of field estimates of aboveground biomass and coincident remote sensing data from airborne or terrestrial lidar. There are few places that meet these requirements, and they are mostly in the northern hemisphere and temperate zone. Here we summarize the potential for low-altitude drones to produce new observations in support of mission science. We describe technical requirements for producing high-quality measurements from autonomous platforms and highlight differences among commercially available laser scanners and drone aircraft. We then describe a case study using a heavy-lift autonomous helicopter in a temperate mountain forest in the southern Czech Republic in support of calibration and validation activities for the NASA Global Ecosystem Dynamics Investigation. Low-altitude flight using drones enables the collection of ultra-high-density point clouds using wider laser scan angles than have been possible from traditional airborne platforms. These measurements can be precise and accurate and can achieve measurement densities of thousands of points · m-2. Analysis of surface elevation measurements on a heterogeneous target observed 51 days apart indicates that the realized range accuracy is 2.4 cm. The single-date precision is 2.1-4.5 cm. These estimates are net of all processing artifacts and geolocation errors under fully autonomous flight. The 3D model produced by these data can clearly resolve branch and stem structure that is comparable to terrestrial laser scans and can be acquired rapidly over large landscapes at a fraction of the cost of traditional airborne laser scanning.

Performance of Laser-Based Electronic Devices for Structural Analysis of Amazonian Terra-Firme Forests

Tropical vegetation biomass represents a key component of the carbon stored in global forest ecosystems. Estimates of aboveground biomass commonly rely on measurements of tree size (diameter and height) and then indirectly relate, via allometric relationships and wood density, to biomass sampled from a relatively small number of harvested and weighed trees. Recently, however, novel in situ remote sensing techniques have been proposed, which may provide nondestructive alternative approaches to derive biomass estimates. Nonetheless, we still lack knowledge of the measurement uncertainties, as both the calibration and validation of estimates using different techniques and instruments requires consistent assessment of the underlying errors. To that end, we investigate different approaches estimating the tropical aboveground biomass in situ. We quantify the total and systematic errors among measurements obtained from terrestrial light detection and ranging (LiDAR), hypsometer-based trigonometry, and traditional forest inventory. We show that laser-based estimates of aboveground biomass are in good agreement (<10% measurement uncertainty) with traditional measurements. However, relative uncertainties vary among the allometric equations based on the vegetation parameters used for parameterization. We report the error metrics for measurements of tree diameter and tree height and discuss the consequences for estimated biomass. Despite methodological differences detected in this study, we conclude that laser-based electronic devices could complement conventional measurement techniques, thereby potentially improving estimates of tropical vegetation biomass.