Rescaling the trophic structure of marine food webs

Exploring diet shifts and ecology in modern sharks using calcium isotopes and trace metal records of their teeth

Sharks occupy all living environments of the marine realm as well as some freshwater systems. They display varied and flexible feeding behaviours, but understanding their diet remains challenging due to their elusive ecology and the invasiveness of stomach content analyses in regard of their threatened status. As a potential alternative, we discuss the variability in δ44/42Ca values recorded in the tooth enamel of size-graded individuals belonging to three species of large sharks with distinct diets (Isurus oxyrinchus, Hexanchus griseus and Carcharodon carcharias). The preliminary results highlight shifts in diet linked to ontogeny (I. oxyrinchus and H. griseus) and spatial distribution (C. carcharias) characterizing feeding behaviour in these species at individual and population level. These outcomes agree with the results of traditional stomach analyses supporting that nontraditional stable isotopes thus represent new perspectives for the study of modern and extinct shark ecology. In addition, for the first time, the Sr/Ca elemental ratios measured in H. griseus reflect sexual differences that could be interpreted in terms of spatial segregation or physiological heterogeneities.

A Meta-Analysis of Mercury Biomagnification in Freshwater Predatory Invertebrates: Community Diversity and Dietary Exposure Drive Variability

Accurate estimates of methylmercury (MeHg) exposure are valuable to actionably assess risk and protect wildlife and human health. MeHg trophic transfer is a critical driver of risk: MeHg is generally biomagnified by a factor of 8.3 ± 7.5 from one trophic level to the next, averaged across freshwater communities (mean ± standard deviation). This variability can produce disparate risks even where basal MeHg concentrations are similar. Taxonomy may be one driver of this variability: physiologically diverse groups, like vertebrates and invertebrates, may assimilate MeHg differently. To determine whether taxonomy affects trophic transfer efficiency, we conducted a meta-analysis characterizing predatory invertebrate MeHg biomagnification. Our analyses estimated that freshwater predatory invertebrates biomagnify MeHg by factors of 2.1 ± 0.2 to 4.3 ± 0.3, with a 98.9 ± 0.4% posterior probability that factors are below 5 (mean ± standard error). When vertebrates or primary producers were included, a site's trophic magnification factor was 18.6 ± 6.2 to 54.1 ± 7.7% higher than estimates for invertebrates alone. Biomagnification was inversely correlated to prey MeHg concentration and varied among systematic and functional groups. These data suggest that predatory invertebrates biomagnify MeHg less efficiently than vertebrates and that a community's diversity and structure determine its biomagnification efficiency. Incorporating organismal variation in trophic transfer estimates may improve the assessment, communication, and management of MeHg risk.

Challenging trophic position assessments in complex ecosystems: Calculation method, choice of baseline, trophic enrichment factors, season and feeding guild do matter: A case study from Marquesas Islands coral reefs

Assessments of ecosystem functioning are a fundamental ecological challenge and an essential foundation for ecosystem-based management. Species trophic position (TP) is essential to characterize food web architecture. However, despite the intuitive nature of the concept, empirically estimating TP is a challenging task due to the complexity of trophic interaction networks. Various methods are proposed to assess TPs, including using different sources of organic matter at the base of the food web (the 'baseline'). However, it is often not clear which methodological approach and which baseline choices are the most reliable. Using an ecosystem-wide assessment of a tropical reef (Marquesas Islands, with available data for 70 coral reef invertebrate and fish species), we tested whether different commonly used TP estimation methods yield similar results and, if not, whether it is possible to identify the most reliable method. We found significant differences in TP estimates of up to 1.7 TPs for the same species, depending on the method and the baseline used. When using bulk stable isotope data, the choice of the baseline significantly impacted TP values. Indeed, while nitrogen stable isotope (δ15N) values of macroalgae led to consistent TP estimates, those using phytoplankton generated unrealistically low TP estimates. The use of a conventional enrichment factor (i.e. 3.4‰) or a 'variable' enrichment factor (i.e. according to feeding guilds) also produced clear discrepancies between TP estimates. TPs obtained with δ15N values of source amino acids (compound-specific isotope analysis) were close to those assessed with macroalgae. An opposite seasonal pattern was found, with significantly lower TPs in winter than in summer for most species, with particularly pronounced differences for lower TP species. We use the observed differences to discuss possible drivers of the diverging TP estimates and the potential ecological implications.

Shortened food chain length in a fished versus unfished coral reef

Direct exploitation through fishing is driving dramatic declines of wildlife populations in ocean environments, particularly for predatory and large-bodied taxa. Despite wide recognition of this pattern and well-established consequences of such trophic downgrading on ecosystem function, there have been few empirical studies examining the effects of fishing on whole system trophic architecture. Understanding these kinds of structural impacts is especially important in coral reef ecosystems-often heavily fished and facing multiple stressors. Given the often high dietary flexibility and numerous functional redundancies in diverse ecosystems such as coral reefs, it is important to establish whether web architecture is strongly impacted by fishing pressure or whether it might be resilient, at least to moderate-intensity pressure. To examine this question, we used a combination of bulk and compound-specific stable isotope analyses measured across a range of predatory and low-trophic-level consumers between two coral reef ecosystems that differed with respect to fishing pressure but otherwise remained largely similar. We found that even in a high-diversity system with relatively modest fishing pressure, there were strong reductions in the trophic position (TP) of the three highest TP consumers examined in the fished system but no effects on the TP of lower-level consumers. We saw no evidence that this shortening of the affected food webs was being driven by changes in basal resource consumption, for example, through changes in the spatial location of foraging by consumers. Instead, this likely reflected internal changes in food web architecture, suggesting that even in diverse systems and with relatively modest pressure, human harvest causes significant compressions in food chain length. This observed shortening of these food webs may have many important emergent ecological consequences for the functioning of ecosystems impacted by fishing or hunting. Such important structural shifts may be widespread but unnoticed by traditional surveys. This insight may also be useful for applied ecosystem managers grappling with choices about the relative importance of protection for remote and pristine areas and the value of strict no-take areas to protect not just the raw constituents of systems affected by fishing and hunting but also the health and functionality of whole systems.

Body size predicts ontogenetic nitrogen stable-isotope (δ15N) variation, but has little relationship with trophic level in ectotherm vertebrate predators

Large predators have disproportionate effects on their underlying food webs. Thus, appropriately assigning trophic positions has important conservation implications both for the predators themselves and for their prey. Large-bodied predators are often referred to as apex predators, implying that they are many trophic levels above primary producers. However, theoretical considerations predict both higher and lower trophic position with increasing body size. Nitrogen stable isotope values (δ15N) are increasingly replacing stomach contents or behavioral observations to assess trophic position and it is often assumed that ontogenetic dietary shifts result in higher trophic positions. Intraspecific studies based on δ15N values found a positive relationship between size and inferred trophic position. Here, we use datasets of predatory vertebrate ectotherms (crocodilians, turtles, lizards and fishes) to show that, although there are positive intraspecific relationships between size and δ15N values, relationships between stomach-content-based trophic level (TPdiet) and size are undetectable or negative. As there is usually no single value for 15N trophic discrimination factor (TDF) applicable to a predator species or its prey, estimates of trophic position based on δ15N in ectotherm vertebrates with large size ranges, may be inaccurate and biased. We urge a reconsideration of the sole use of δ15N values to assess trophic position and encourage the combined use of isotopes and stomach contents to assess diet and trophic level.

Quantifying the bioaccumulation and trophic transfer processes of heavy metals based on the food web: A case study from freshwater wetland in northeast China

The contamination of wetlands by heavy metals, exacerbated by agricultural activities, presents a threat to both organisms and humans. Heavy metals may undergo trophic transfer through the food web. However, the methods for quantifying the bioaccumulation and trophic transfer processes of heavy metals based on the food web remains unclear. In this study, we employed stable isotope technology to construct a quantitative oriental white stork's typical food web model under a more accurate scaled Δ15N framework. On this basis, the concentrations for heavy metal (Cu, Zn, Hg, Pb) were analyzed, we innovatively visualized the trophic transfer process of heavy metals across 13 nodes and 45 links and quantified the transfer flux based on the diet proportions and heavy metal concentrations of species, taking into account biomagnification effects and potential risks. Our findings revealed that as for Cu and Pb, the transfer flux level was consistent with diet proportion across most links. While Hg and Zn transfer flux level exceeded the corresponding diet proportion in the majority of links. In summary, Hg exhibited a significant biomagnification, whereas Cu, Zn, Pb experienced biodilution. The fish dietary health risk assessment for fish consumers showed that Hg, Pb posed certain risks. This research marks a significant step forward in the quantitative assessment of multi-link networks involving heavy metals within the food web.

Comparing trophic position estimates using bulk and compound specific stable isotope analyses: applying new approaches to mackerel icefish Champsocephalus gunnari

Quantifying the tropic position (TP) of an animal species is key to understanding its ecosystem function. While both bulk and compound-specific analyses of stable isotopes are widely used for this purpose, few studies have assessed the consistency between and within such approaches. Champsocephalus gunnari is a specialist teleost that predates almost exclusively on Antarctic krill Euphausia superba. This well-known and nearly constant trophic relationship makes C. gunnari particularly suitable for assessing consistency between TP methods under field conditions. In the present work, we produced and compared TP estimates for C. gunnari and its main prey using a standard bulk and two amino acid-specific stable isotope approaches (CSI-AA). One based on the difference between glutamate and phenylalanine (TPGlx-Phe), and the other on the proline-phenylalanine difference (TPPro-Phe). To do that, samples from C. gunnari, E. superba and four other pelagic invertebrate and fish species, all potential prey for C.gunnari, were collected off the South Orkney Islands between January and March 2019, analyzed using standard isotopic ratio mass spectrometry methods and interpreted following a Bayesian approach. Median estimates (CI95%) for C. gunnari were similar between TPbulk (3.6; CI95%: 3.0-4.8) and TPGlx-Phe(3.4; CI95%:3.2-3.6), and lower for TPPro-Phe (3.1; CI95%:3.0-3.3). TP differences between C. gunnari and E. superba were 1.4, 1.1 and 1.2, all compatible with expectations from the monospecific diet of this predator (ΔTP=1). While these results suggest greater accuracy for Glx-Phe and Pro-Phe, differences observed between both CSI-AA approaches suggests these methods may require further validation before becoming a standard tool for trophic ecology.

Trophic transfer of antibiotics in the benthic-pelagic coupling foodweb in a macrophyte-dominated shallow lake: The importance of pelagic-benthic coupling strength and baseline organism

In lake ecosystems, pelagic-benthic coupling strength (PBCS) is closely related to foodweb structure and pollutant transport. However, the trophic transfer of antibiotics in a benthic-pelagic coupling foodweb (BPCFW) and the manner in which PBCS influences the trophic magnification factor (TMFs) of antibiotics is still not well understood in the whole lake. Herein, the trophic transfer behavior of 12 quinolone antibiotics (QNs) in the BPCFW of Baiyangdian Lake were studied during the period of 2018-2019. It was revealed that 24 dominant species were contained in the BPCFW, and the trophic level was 0.42-2.94. Seven QNs were detected in organisms, the detection frequencies of ofloxacin (OFL), flumequine (FLU), norfloxacin (NOR), and enrofloxacin (ENR) were higher than other QNs. The ∑QN concentration in all species was 11.3-321 ng/g dw. The TMFs for ENR and NOR were trophic magnification, while for FLU/OFL it was trophic dilution. The PBCS showed spatial-temporal variation, with a range of 0.6977-0.7910. The TMFs of ENR, FLU, and OFL were significantly positively correlated with PBCS. Phytoplankton and macrophyte biomasses showed indirect impact on the TMFs of QNs by directly influencing the PBCS. Therefore, the PBCS was the direct influencing factor for the TMFs of chemicals.

Effects of lipid extraction on stable isotope ratios of carbon and nitrogen in muscles of freshwater fish

The extraction of lipids by the Folch method from the muscles of all the fish studied led to statistically significant differences in the values of δ15N. At the same time, lipid extraction led to a statistically significant increase in δ13C in pike and roach, and to a statistically insignificant decrease in δ13C in perch and bream. Thus, lipid extraction cannot serve as a universal method of sample preparation for the analysis of the isotopic composition of carbon (13C/12C) and nitrogen (15N/14N) in fish muscles. The differences between the δ13C values in the samples before and after lipid extraction were statistically investigated by different models. It is shown that mathematical correction method models can be used, but the results are depending on the fish types.

Ontogenetic shift or not? Different foraging trade-offs within the meso- to bathypelagic fish community

During ontogeny, the increase in body size forces species to make trade-offs between their food requirements, the conditions necessary for growth and reproduction as well as the avoidance of predators. Ontogenetic changes are leading species to seek out habitats and food resources that meet their needs. To this end, ontogenetic changes in nocturnal habitat (vertical use of the water column) and in the type of food resources (based on stable isotopes of nitrogen) were investigated in 12 species of deep pelagic fish from the Bay of Biscay in the Northeast Atlantic. Our results revealed the existence of major differences in the ontogenetic strategies employed by deep pelagic fishes. Some species showed ontogenetic changes in both vertical habitat use and food resources (e.g. Jewel lanternfish (Lampanyctus crocodilus) and Atlantic soft pout (Melanostigma atlanticum)). In contrast, other species showed no ontogenetic change (e.g. Koefoed's searsid (Searsia koefoedi) and Lancet fish (Notoscopelus kroyeri)). Some species only changed food resources (e.g. Spotted lanternfish (Myctophum punctatum), Spotted barracudina (Arctozenus risso) and Stout sawpalate (Serrivomer beanii)), while others seemed to be influenced more by depth than by trophic features (e.g. Bluntsnout smooth-head (Xenodermichthys copei) and Olfer's Hatchetfish (Argyropelecus olfersii)). These results suggest that to meet their increasing energy requirements during ontogeny, some species have adopted a strategy of shifting their food resources (larger prey or prey with a higher trophic level), while others seemed to maintain their food resources but are most likely increasing the quantity of prey ingested. As fish species can have different functional roles during their development within ecosystems, characterising ontogenetic changes in mesopelagic fish species is a crucial step to be considered in future research aimed at understanding and modelling the complexity of deep-pelagic food webs.

Trophodynamics of halogenated organic pollutants (HOPs) in aquatic food webs

Halogenated organic pollutants (HOPs) represent hazardous and persistent compounds characterized by their capacity to accumulate within organisms and endure in the environment. These substances are frequently transmitted through aquatic food webs, engendering potential hazards to ecosystems and human well-being. The trophodynamics of HOPs in aquatic food webs has garnered worldwide attention within the scientific community. Despite comprehensive research endeavors, the prevailing trajectory of HOPs, whether inclined toward biomagnification or biodilution within global aquatic food webs, remains unresolved. Furthermore, while numerous studies have probed the variables influencing the trophic magnification factor (TMF), the paramount determinant remains elusive. Collating a compendium of pertinent literature encompassing TMFs from the Web of Science between 1994 and 2023, our analysis underscores the disparities in attention accorded to legacy HOPs compared to emerging counterparts. A discernible pattern of biomagnification characterizes the behavior of HOPs within aquatic food webs. Geographically, the northern hemisphere, including Asia, Europe, and North America, has demonstrated greater biomagnification than its southern hemisphere counterparts. Utilizing a boosted regression tree (BRT) approach, we reveal that the food web length and type emerge as pivotal determinants influencing TMFs. This review provides a valuable basis for gauging ecological and health risks, thereby facilitating the formulation of robust standards for managing aquatic environments.

Mercury at the top of the world: A 31-year record of mercury in Arctic char in the largest High Arctic lake, linked to atmospheric mercury concentrations and climate oscillations

Lake Hazen, the largest lake north of the Arctic circle, is being impacted by mercury (Hg) pollution and climate change. The lake is inhabited by two morphotypes of land-locked Arctic char (Salvelinus alpinus), a sensitive indicator species for pollution and climatic impacts. The objectives of this study were to describe the trends in Hg concentration over time and to determine the relationship of climate to length-at-age and Hg concentrations in each char morphotype, as well as the relationship to atmospheric Hg measurements at a nearby monitoring station. Results for Hg in char muscle were available from 20 sampling years over the period 1990 to 2021. We found significant declines in Hg concentrations for both morphotypes during the 31-year study period. Increased rain and earlier freeze-up of lake ice during the summer growing season was linked to increased length-at-age in both char morphotypes. For the large morphotype, higher total gaseous Hg in the fall and winter seasons was related to higher concentrations of Hg in char, while increased glacial runoff was related to decreases in char Hg. For the small morphotype char, increased snow and snow accumulation in the fall season were linked to declines in char Hg concentration. The Atlantic Multidecadal Oscillation and Arctic Oscillation were positively related to the large char Hg trend and Arctic Oscillation was positively related to the small char Hg trend. Significant trend relationships between atmospheric Hg and Hg in biota in remote regions are rare and uniquely valuable for evaluation of the effectiveness of the Minamata Convention and related monitoring efforts.

Isotopic niche overlap among foraging marine turtle species in the Gulf of Mexico

Sympatric species may overlap in their use of habitat and dietary resources, which can increase competition. Comparing the ecological niches and quantifying the degree of niche overlap among these species can provide insights into the extent of resource overlap. This information can be used to guide multispecies management approaches tailored to protect priority habitats that offer the most resources for multiple species. Stable isotope analysis is a valuable tool used to investigate spatial and trophic niches, though few studies have employed this method for comparisons among sympatric marine turtle species. For this study, stable carbon, nitrogen, and sulfur isotope values from epidermis tissue were used to quantify isotopic overlap and compare isotopic niche size in loggerhead (Caretta caretta), green (Chelonia mydas), and Kemp's ridley (Lepidochelys kempii) turtles sampled from a shared foraging area located offshore of Crystal River, Florida, USA. Overall, the results revealed high degrees of isotopic overlap (>68%) among species, particularly between loggerhead and Kemp's ridley turtles (85 to 91%), which indicates there may be interspecific competition for resources. Samples from green turtles had the widest range of isotopic values, indicating they exhibit higher variability in diet and habitat type. Samples from loggerhead turtles had the most enriched mean δ34S, suggesting they may forage in slightly different micro-environments compared with the other species. Finally, samples from Kemp's ridley turtles exhibited the smallest niche size, which is indicative of a narrower use of resources. This is one of the first studies to investigate resource use in a multispecies foraging aggregation of marine turtles using three isotopic tracers. These findings provide a foundation for future research into the foraging ecology of sympatric marine turtle species and can be used to inform effective multispecies management efforts.

Mercury Contamination as an Indicator of Fish Species' Trophic Position in the Middle Araguaia River, Brazil

This study evaluates the use of mercury (Hg) concentrations in fish muscle tissue to determine a species' trophic position (TP) in its environment. A campaign conducted in 2019 along 375 km in the middle Araguaia River basin, Brazil, resulted in 239 organisms from 20 species collected. The highest total mercury (THg) concentrations were found in Pellonacastelnaeana (6.93 µg·g-1, wet weight) and in Triportheus elongatus (3.18 µg·g-1, wet weight), whose TPs were different according to the FishBase database. However, they occupied the same trophic level in this study. The intra-specific comparison showed a difference in Hg concentrations between individuals captured in distinct sites. The study of the biota-sediment accumulation factor (BSAF) showed that spatiality interferes with a species' TP. Statistical analyses revealed that when we used a predicted species' TP based on each individual's size, it explained 72% of the variability in THg concentration across all fish species. Multiple regression analysis confirmed that standard length and FishBase values are positively associated with THg (R2 = 0.943). These results point to Hg as a viable indicator of a fish species' TP since it reflects regional, biological, and environmental factors, as demonstrated here for the middle Araguaia River.

The pelagic food web of the Western Adriatic Sea: a focus on the role of small pelagics

The Adriatic Sea is one of the largest areas of occurrence of shared small pelagic stocks and the most fished area of the Mediterranean Sea, which is in turn one of the most exploited basins of the world. The variations in the stable isotope contents (δ15N and δ13C) were determined for three small pelagic fishes (i.e., Engraulis encrasicolus, Sardina pilchardus, and Sprattus sprattus, respectively known as anchovies, sardines and sprats) collected across the western side of the basin. Our data allowed to determine the width and features of their trophic niches, to assess potential overlap or resource partitioning among them, and likely anticipate species adaptation to future climate change scenarios. Moreover, variations in stable isotope contents were correlated to both resource availability (i.e., mesozooplankton) and environmental variables. The high productivity and in turn the high resource availability of the basin, especially in the northern part, resulted in favor of the resource partitioning that occurs in each sub-area of the Adriatic Sea among the three species. Medium-sized specimens of the three species mostly fed on small zooplankton, while adult sprats relied on large copepods and those of sardines and anchovies also consumed large portion of phytoplankton, confirming the high trophic plasticity of these two dominants small pelagic species. However, considering that anchovies have the greatest degree of trophic diversity compared with the other two species, they could be the most adapted to changing feeding conditions. The increase in sea temperatures that are reducing primary production and in turn zooplankton abundances, coupled with even more frequent extreme meteorologic events could exacerbate the competition for trophic resources among pelagic mesopredators, and could lead to more notable stocks' fluctuations and unpredictable wasp-waist effects.

Movement and population dispersal of dolphinfish (Coryphaena hippurus) across the Eastern Tropical Pacific inferred from carbon and nitrogen stable isotope analyses

The dolphinfish (Coryphaena hippurus) is a globally distributed marine predator that supports one of the most important coastal fisheries along the Eastern Tropical Pacific (ETP), but its spatial movements in this area are poorly understood. Stable isotope values (δ13 C and δ15 N) of white muscle from dolphinfish (n = 220) captured at different locations across the ETP (i.e., Mexico, Costa Rica, Ecuador, Peru and oceanic areas) were normalized to copepod baseline stable isotope values to estimate dolphinfish trophic position, movements and population dispersal. Movement or residence patterns were inferred from the difference in δ15 N values (Δ15 Ndolphinfish-copepod ‰) between copepods and dolphinfish muscle. Baseline corrected isotope values (δ13 Cdolphinfish-copepod and δ15 Ndolphinfish-copepod ) of dolphinfish muscle were used to estimate isotopic niche metrics and infer population dispersal across isoscapes. Values of δ13 C and δ15 N differed between juvenile and adult dolphinfish and across the ETP. Trophic position estimates ranged from 3.1 to 6.0 with a mean of 4.6. Adults and juveniles had similar trophic position estimates, whereas isotopic niche areas (SEA ‰2 ) of adults were greater relative to juveniles in every location. Adult dolphinfish showed "moderate movement by some individuals" in all locations based on Δ15 Ndolphinfish-copepod values, except for Costa Rica where adults were classified with "high degree of movement by some individuals" whereas juveniles showed "limited movement" in all areas except Mexico. Population dispersal based on Δ15 Ndolphinfish-copepod values showed "moderate" and "high" dispersal for adults and "no dispersal" for most juveniles, except for Mexico. This study provides insight into potential dolphinfish spatial mobility across an area of interest for multiple nations, which can help to improve stock assessments and management of the species.

Isotopic and biochemical trophic markers reveal the complexity of interactions at the base of pelagic food webs (Mediterranean sea)

To gain insight into the impact of bottom-up changes in the plankton community on planktivorous fish in the context of the decline of small pelagic fisheries in the Northwestern Mediterranean Sea, we have conducted an extensive year-long study. The investigation combined biochemical analyses (proteins, carbohydrates, and lipids) with C and N stable isotope analyses (SIA) to simultaneously study phytoplankton, zooplankton, and eight planktivorous fish species (Engraulis encrasicolus, Sardina pilchardus, Sardinella aurita, Sprattus sprattus, Cepola macrophthalma, Chromis chromis, Boops boops, and Spicara maena). This study is the first to analyze both stable isotope and biochemical compositions in coastal particulate organic matter (POM) size classes (0.7-2.7 μm, 2.7-20 μm, and 20-200 μm), zooplankton size classes (200-300 μm, 300-500 μm, 500-1000 μm, 1000-2000 μm, and >2000 μm), and taxonomic groups. We demonstrated that: (1) POM stable isotope compositions varied based on its spatial origin, the taxonomic composition of its biota, and its biochemical content; (2) δ15N values increased with zooplankton size classes and groups, indicating different trophic levels; (3) Phytoplankton exhibited a lipid-rich composition (∼55%), while zooplankton and fish muscles were protein-rich (∼61% and ∼66%, respectively). Bayesian stable isotope mixing models revealed that, on average: (1) POM from oceanic waters contributed the most to the POM in the bay (>51%), with a dominance of pico-POM (∼43%); (2) The 200-1000 μm zooplankton primarily consumed nano-POM, the 1000-2000 μm zooplankton mostly consumed micro-POM (∼64%), and the >2000 μm zooplankton also mostly consumed micro-POM; (3) Mesozooplankton (200-2000 μm) constituted the main portion (∼42%) of the diet for planktivorous fish species, while macrozooplankton organisms (>2000 μm) were the primary food resource (∼43%) for both B. boops and S. sprattus. Our study underscores the complexity of the pelagic food web and highlights the bottom-up transfer of organic matter from the smallest phytoplankton size fractions to planktivorous fish.

Metabarcoding Used for the First Time to Identify Prey of Wild Totoaba macdonaldi

Totoaba macdonaldi is an endangered endemic fish of the Gulf of California. Overexploitation resulted in the Mexican government banning the fishing of this species in 1975, and it being listed as endangered. However, the species is still subject to illegal fishing. Despite its conservation status, little is known about totoaba biology. The present study aimed to implement, for the first time, a metabarcoding protocol to describe the totoaba diet. Four wild totoaba individuals, seized by Mexican law enforcement agents, were dissected, and their stomach contents were collected. Three representative amplicon libraries were generated for cephalopods, chordates, and eukaryotes. After sequencing, 18 different taxa were identified, of which 11 species were recognized as prey. The totoaba were found to have consumed Pacific anchovy (Cetengraulis mysticetus), flathead grey mullet (Mugil cephalus), bigeye croaker (Micropogonias megalops), northern anchovy (Engraulis mordax), ocean whitefish (Caulolatilus princeps), milkfish (Chanos chanos), and Pacific sardine (Sardinops sagax). Members of the Euphausiidae family (krill) were also identified. This study identified up to four times more species in much fewer samples than previous studies based on morphological recognition, thus confirming metabarcoding as an effective method for studying the feeding habits of this species and one providing the tools required for further analysis of the totoaba diet.

Fatty acid isotopic composition in Atlantic pollock is not influenced by environmentally relevant dietary fat concentrations

The application of fatty acid (FA) isotopic analysis has great potential in elucidating food web structure, but it has not experienced the same wide-spread use as amino acid isotopic analyses. The failure to adopt FA isotopic methods is almost certainly linked to a lack of reliable information on trophic fractionation of FA, particularly in higher predators. In this work, we attempt to address this shortfall, through comparison of FA δ¹³C values in captive Atlantic pollock (Pollachius virens) liver and their known diets. Since catabolism is likely the main cause of fractionation and it may vary with dietary fat content, we investigated the impact of dietary fat concentration on isotopic discrimination in FA. We fed Atlantic pollock three formulated diets with similar FA isotopic compositions but different fat concentrations (5-9% of diet), representative of the range found in natural prey, for 20 weeks. At the conclusion of the study, δ¹³C values of liver FA were very similar to the FA within the corresponding diets, with most discrimination factors < 1. For all FA except 22:6n-3, dietary fat had no effect on discrimination factors. Only for 22:6n-3 did fish fed the highest fat diet have lower δ¹³C values than the diet consumed. Thus, these FA-specific discrimination factors can be applied to evaluate diets in marine fish consuming natural diets and will serve as additional and valuable biomarkers in fish feeding ecology.

Isotopic turnover in polar cod (Boreogadus saida) muscle determined through a controlled feeding experiment

Polar cod (Boreogadus saida) is an important trophic link within Arctic marine food webs and is likely to experience diet shifts in response to climate change. One important tool for assessing organism diet is bulk stable isotope analysis. However, key parameters necessary for interpreting the temporal context of stable isotope values are lacking, especially for Arctic species. This study provides the first experimental determination of isotopic turnover (as half-life) and trophic discrimination factors (TDFs) of both δ¹³ C and δ¹⁵ N in adult polar cod muscle. Using a diet enriched in both ¹³ C and ¹⁵ N, we measured isotopic turnover times of 61 and 49 days for δ¹³ C and δ¹⁵ N, respectively, with metabolism accounting for >94% of the total turnover. These half-life estimates are valid for adult polar cod (>3 years) experiencing little somatic growth. We measured TDFs in our control of 2.6‰ and 3.9‰ for δ¹³ C and δ¹⁵ N, respectively, and we conclude that applying the commonly used TDF of ~1‰ for δ¹³ C for adult polar cod may lead to misrepresentation of dietary carbon source, while the use of 3.8‰ for δ¹⁵ N is appropriate. Based on these results, we recommend that studies investigating seasonal shifts in the diet of adult polar cod sample at temporal intervals of at least 60 days to account for isotopic turnover in polar cod muscle. Although isotopic equilibrium was reached by the fish in this study, it was at substantially lower isotope values than the diet. Additionally, the use of highly enriched algae in the experimental feed caused very high variability in diet isotope values which precluded accurate calculation of TDFs from the enriched fish. As a result of the challenges faced in this study, we discourage the use of highly enriched diets for similar experiments and provide recommendations to guide the design of future isotopic turnover experiments.

Trophic ontogeny of a generalist predator is conserved across space

Consumers can influence ecological patterns and processes through their trophic roles and contributions to the flow of energy through ecosystems. However, the diet and associated trophic roles of consumers commonly change during ontogeny. Despite the prevalence of ontogenetic variation in trophic roles of most animals, we lack an understanding of whether they change consistently across local populations and broad geographic gradients. We examined how the diet and trophic position of a generalist marine predator varied with ontogeny across seven broadly separated locations (~ 750 km). We observed a high degree of heterogeneity in prey consumed without evidence of spatial structuring in this variability. However, compound-specific isotope analysis of amino acids revealed remarkably consistent patterns of increasing trophic position through ontogeny across local populations, suggesting that the roles of this generalist predator scaled with its body size across space. Given the high degree of diet heterogeneity we observed, this finding suggests that even though the dietary patterns differed, the underlying food web architecture transcended variation in prey species across locations for this generalist consumer. Our research addresses a gap in empirical field work regarding the interplay between stage-structured populations and food webs, and suggests ontogenetic changes in trophic position can be consistent in generalist consumers.

A glimpse into the trophic ecology of deep-water sharks in an important crustacean fishing ground

Deep-water sharks are among the most vulnerable deep-water taxa because of their extremely conservative life-history strategies (i.e., late maturation, slow growth, and reproductive rates), yet little is known about their biology and ecology. Thus, this study aimed at investigating the trophic ecology of five deep-water shark species, the birdbeak dogfish (Deania calcea), the arrowhead (D. profundorum), the smooth lanternshark (Etmopterus pusillus), the blackmouth catshark (Galeus melastomus) and the knifetooth dogfish (Scymnodon ringens) sampled onboard a crustacean bottom-trawler off the south-west coast of Portugal. We combined carbon and nitrogen stable isotopes with RNA and DNA (RD) ratios to investigate the main groups of prey assimilated by these species and their nutritional condition, respectively. Stable isotopes revealed overall small interspecific variability in the contribution of different taxonomic groups to sharks' tissues, as well as in the origin of their prey. S. ringens presented higher δ¹⁵ N and δ¹³ C values than the other species, suggesting reliance on bathyal cephalopods, crustaceans and teleosts; the remaining species likely assimilated bathy-mesopelagic prey. The RD ratios indicated that most of the individuals had an overall adequate nutritional condition and had recently eaten. This information, combined with the fact that stable isotopes indicate that sharks assimilated prey from the local or nearby food webs (including commercially important shrimps), suggests a potential overlap between this fishing area and their foraging grounds, which requires further attention.

Delineating the food web structure in an Indian estuary during tropical winter employing stable isotope signatures and mixing model

The food and feeding links and sources in an impacted tropical estuary situated along India's western coast, the Ulhas River Estuary (URE) was analyzed employing the stable carbon and nitrogen isotopic signatures (δ¹³C and δ¹⁵N). Three basal carbon sources, such as mangrove leaves, particulate organic matter (phytoplankton), and detritus, were analyzed together with eight consumer groups from various trophic guilds. The δ¹³C varied from - 19.67 to - 24.61‰, whereas δ¹⁵N ranged from 6.31 to 15.39‰ from the primary consumer to the top predator species. The stable isotope mixing model developed for URE revealed a phytoplankton based pelagic food chain and detritus based benthic food chain in URE. The fairly larger value of SEA (Standard Ellipse Area) in the URE suggest a much broader food web structure and high trophic diversity in the ecosystem. Higher influence of detritus on the assimilated diet of majority of consumers and evidences of nitrogen enrichment in the basal sources such as detritus and particulate organic matter by anthropogenic activities in URE point towards nitrogen pollution and subsequent trophic disturbance in this tropical estuarine ecosystem.

Improving the qualities of the trophic magnification factors (TMFs): A case study based on scaled Δ15N trophic position framework and separate baseline species

Scientific understanding of trophic magnification factors (TMFs) is conducive to formulating environmental management measures. Trophic position (TP) of species is the key parameter in TMFs assessment. Nitrogen stable isotopes (δ¹⁵N) provide a powerful tool to estimate TP. However, some limitations could introduce considerable uncertainty into TP and TMFs assessment which mainly includes: 1) determination of Δ¹⁵N between two adjacent trophic positions; 2) determination of baseline species. Different from the widely used constant Δ¹⁵N (3.4 ‰) between two adjacent trophic positions, which is called additive Δ¹⁵N framework, Δ¹⁵N gradually decreases as trophic position increases under scaled Δ¹⁵N framework, which has been confirmed by more and more laboratory studies and meta-analyses. In this study, we sampled in two similar littoral ecosystems separated by one natural dam, which is called Small Xingkai Lake and Xingkai Lake, analyzed the δ¹⁵N and total mercury (THg) of each species. On the one hand, we compared the TP of species under the additive Δ¹⁵N framework and scaled Δ¹⁵N framework with the White shrimp (Exopalaemon modestus) as baseline species in two lakes respectively. On the other hand, we explored the possible changes in TMFs based on TP. Our results show, under the scaled Δ¹⁵N framework, the trophic position of the same species is higher, while TMFs is lower compared with the additive Δ¹⁵N framework; even if in the two interconnected lakes, distributed the same baseline species, in the similar ecosystem, separate baselines should also be used. In this study, two frameworks of the food chain were compared in two interconnected freshwater ecosystems for the first time. The difference between TMFs of two lakes was obvious under scaled framework but not under additive framework. We also recommend that future TMFs assessments should be based on the scaled Δ¹⁵N framework because it has improved the accuracy of trophic position assessment.

Integrating isotopic and nutritional niches reveals multiple dimensions of individual diet specialisation in a marine apex predator

Dietary specialisations are important determinants of ecological structure, particularly in species with high per-capita trophic influence like marine apex predators. These species are, however, among the most challenging in which to establish spatiotemporally integrated diets. We introduce a novel integration of stable isotopes with a multidimensional nutritional niche framework that addresses the challenges of establishing spatiotemporally integrated nutritional niches in wild populations, and apply the framework to explore individual diet specialisation in a marine apex predator, the white shark Carcharodon carcharias. Sequential tooth files were sampled from juvenile white sharks to establish individual isotopic (δ-space; δ¹³ C, δ¹⁵ N, δ³⁴ S) niche specialisation. Bayesian mixing models were then used to reveal individual-level prey (p-space) specialisation, and further combined with nutritional geometry models to quantify the nutritional (N-space) dimensions of individual specialisation, and their relationships to prey use. Isotopic and mixing model analyses indicated juvenile white sharks as individual specialists within a broader, generalist, population niche. Individual sharks differed in their consumption of several important mesopredator species, which suggested among-individual variance in trophic roles in either pelagic or benthic food webs. However, variation in nutrient intakes was small and not consistently correlated with differences in prey use, suggesting white sharks as nutritional specialists and that individuals could use functionally and nutritionally different prey as complementary means to achieve a common nutritional goal. We identify how degrees of individual specialisation can differ between niche spaces (δ-, p- or N-space), the physiological and ecological implications of this, and argue that integrating nutrition can provide stronger, mechanistic links between diet specialisation and its intrinsic (fitness/performance) and extrinsic (ecological) outcomes. Our time-integrated framework is adaptable for examining the nutritional consequences and drivers of food use variation at the individual, population or species level.

Lipid Extraction and Sample Preservation Techniques for Stable Isotope Analysis and Ecological Assays

Lipid extraction is an important component of many ecological and ecotoxicological measurements. For instance, percent lipid is often used as a measure of body condition, under the assumption that those individuals with higher lipid reserves are healthier. Likewise, lipids are depleted in ¹³C compared with protein, and it is consequently a routine to remove lipids prior to measuring carbon isotopes in ecological studies so that variation in lipid content does not obscure variation in diet. We provide detailed methods for two different protocols for lipid extraction: Soxhlet apparatus and manual distillation. We also provide methods for polar and non-polar solvents. Neutral (non-polar) solvents remove some lipids but few non-lipid compounds whereas polar solvents remove not only most lipids but also many non-lipid compounds. We discuss each of the methods and provide guidelines for best practices. We recommend that for stable isotope analysis, researchers test for a relationship between the change in the carbon stable isotope ratio and the amount of lipid extracted to see if the degree of extraction has an impact on isotope ratios. Stable isotope analysis is widely used by ecologists, and we provide a detailed methodology that minimizes known biases.

Contrasting energy pathways suggest differing susceptibility of pelagic fishes to an invasive ecosystem engineer in a large lake system

Species invasions can lead to ecological regime shifts by altering food web structure and changing nutrient cycling. Stable isotopes are a powerful tool to understand the potential and realized impacts of invasive species on food webs, especially when used in tandem with other dietary tracers. An invasion by one of the most notorious freshwater invaders in North America, the quagga mussel (Dreissena bugensis), is imminent in Lake Champlain, United States. An invasion by this filter feeder has the potential to drastically alter energy pathways and destabilize pelagic fisheries via bottom-up impacts. However, the extent and magnitude of these impacts depend on the current food web structure of the mid-trophic pelagic food web, which was previously not well described. We used Bayesian stable isotope mixing models informed by stomach content analysis to identify which energy pathways are currently most important to mid-trophic level fishes. We determined that in the Main Lake basin, the spring phytoplankton bloom and deep chlorophyll layer – the resources most vulnerable to quagga mussels – provide a disproportionate amount of support to the pelagic food web via zooplankton and the migrating macroinvertebrate Mysis. The food web in the Northeast Arm of Lake Champlain is supported by epilimnetic phytoplankton, which is more protected from the filtration effects of quagga mussels than the deep chlorophyll layer. However, the Northeast Arm will likely not provide a high-quality foraging refuge to coldwater pelagic fish due to unfavorable oxythermal conditions. The mid-trophic food web of Lake Champlain—and consequently piscivores who rely on these prey—may be vulnerable to the impending quagga mussel invasion if migratory Mysis are not able to shift their diet to benthic resources.

Top predator sea stars are the benthic equivalent to polar bears of the pelagic realm

The marine pelagic compartment spans numerous trophic levels and consists of numerous reticulate connections between species from primary producers to iconic apex predators, while the benthic compartment is perceived to be simpler in structure and comprised of only low trophic level species. Here, we challenge this paradigm by illustrating that the benthic compartment is home to a subweb of similar structure and complexity to that of the pelagic realm, including the benthic equivalent to iconic polar bears: megafaunal-predatory sea stars.

Reconstructions of individual fish trophic geographies using isotopic analysis of eye-lens amino acids

Fish eye lenses are a proteinaceous structure that grows by accumulating layers in a chronological manner. Each layer becomes metabolically inert, capturing the ratio of heavy/light carbon and nitrogen isotopes at time of formation. Therefore, eye lenses contain chronological isotopic records and can be used to create a temporal isotopic history throughout an individual's lifetime. We analyzed eye lens amino-acid δ15N to address spatio-temporal baseline variability and to reconstruct trophic histories of 10 individual Red Snapper. Proteins from sequential eye lens laminae were derivatized to measure 10 amino acids, from which glutamic acid (trophic) and phenylalanine (source) were used to estimate trophic positions at different points in life. Best-fitting regressions were generated to represent individual (R2 ≥ 0.89) and generalized (R2 = 0.77) trophic trajectory for Red Snapper. The resulting trophic trajectories indicated an increase in trophic position with increasing length. Until recently, there has not been a lifetime isotopic structure with enough organic nitrogen to recreate geographic histories using compound-specific stable isotope analysis of amino acids (CSIA-AA). This study confirms that eye-lens laminae can be used to reconstruct trophogeographic histories via CSIA-AA.

Trophic ecology of three stingrays (Myliobatoidei: Dasyatidae) off the Brazilian north-eastern coast: Habitat use and resource partitioning

Understanding the ecological role of species with overlapping distributions is central to inform ecosystem management. Here we describe the diet, trophic level and habitat use of three sympatric stingrays, Hypanus guttatus, H. marianae and H. berthalutzae, through combined stomach content and stable isotope (δ¹³ C and δ¹⁵ N) analyses. Our integrated approach revealed that H. guttatus is a mesopredator that feeds on a diverse diet of benthic and epibenthic marine and estuarine organisms, principally bivalve molluscs, Alpheus shrimp and teleost fishes. Isotopic data supported movement of this species between marine and estuarine environments. H. berthalutzae is also a marine generalist feeder, but feeds primarily on teleost fishes and cephalopods, and consequently occupies a higher trophic level. In contrast, H. marianae is a mesopredator specialized on shrimps and polychaetas occurring only in the marine environment and occupying a low niche breadth. While niche overlap occurred, the three stingrays utilized the same prey resources at different rates and occupied distinct trophic niches, potentially limiting competition for resources and promoting coexistence. These combined data demonstrate that these three mesopredators perform different ecological roles in the ecosystems they occupy, limiting functional redundancy.

Isotopic niche partitioning of co-occurring large marine vertebrates around an Indian ocean tropical oceanic island

Tropical oceans host a high diversity of species, including large marine consumers. In these oligotrophic ecosystems, oceanic islands often favour the aggregation of species and biomass as they provide feeding opportunities related to the mechanisms of island mass effect. As such, the waters surrounding La Reunion (Southwest Indian Ocean) host seabirds, large pelagic teleosts, elasmobranchs, delphinids and sea turtles. Isotopic niche partitioning and comparison of trophic levels among these species (n = 21) were investigated using stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotope analysis. Overall, δ¹³C values were highly variable among taxa, indicating that the species exploit multiple foraging habitats along a coast-open ocean gradient. Overlap in δ¹⁵N values was limited, except for teleost species, the two species of sea turtles and two species of delphinids, the Indo-pacific bottlenose dolphin (Tursiops aduncus) and the Spinner dolphin (Stellena longirostris). Stable isotope analyses of samples collected over a 9-years period on different tissues with different integration times provide a consistent picture of the structure of the community of large marine vertebrates species around La Reunion and highlight the underlying mechanisms to limit the competition between species. The wide range of isotopic values confirms that large marine vertebrates have different trophic roles in coastal marine food webs around this oceanic island, which limits their potential of competitive interactions for resources.

Life History of the Arctic Squid Gonatus fabricii (Cephalopoda: Oegopsida) Reconstructed by Analysis of Individual Ontogenetic Stable Isotopic Trajectories

Cephalopods are important in Arctic marine ecosystems as predators and prey, but knowledge of their life cycles is poor. Consequently, they are under-represented in the Arctic ecosystems assessment models. One important parameter is the change in ecological role (habitat and diet) associated with individual ontogenies. Here, the life history of Gonatus fabricii, the most abundant Arctic cephalopod, is reconstructed by the analysis of individual ontogenetic trajectories of stable isotopes (δ13C and δ15N) in archival hard body structures. This approach allows the prediction of the exact mantle length (ML) and mass when the species changes its ecological role. Our results show that the life history of G. fabricii is divided into four stages, each having a distinct ecology: (1) epipelagic squid (ML < 20 mm), preying mostly on copepods; (2) epi- and occasionally mesopelagic squid (ML 20−50 mm), preying on larger crustaceans, fish, and cephalopods; (3) meso- and bathypelagic squid (ML > 50 mm), preying mainly on fish and cephalopods; and (4) non-feeding bathypelagic gelatinous females (ML > 200 mm). Existing Arctic ecosystem models do not reflect the different ecological roles of G. fabricii correctly, and the novel data provided here are a necessary baseline for Arctic ecosystem modelling and forecasting.

The significance of cephalopod beaks as a research tool: An update

The use of cephalopod beaks in ecological and population dynamics studies has allowed major advances of our knowledge on the role of cephalopods in marine ecosystems in the last 60 years. Since the 1960's, with the pioneering research by Malcolm Clarke and colleagues, cephalopod beaks (also named jaws or mandibles) have been described to species level and their measurements have been shown to be related to cephalopod body size and mass, which permitted important information to be obtained on numerous biological and ecological aspects of cephalopods in marine ecosystems. In the last decade, a range of new techniques has been applied to cephalopod beaks, permitting new kinds of insight into cephalopod biology and ecology. The workshop on cephalopod beaks of the Cephalopod International Advisory Council Conference (Sesimbra, Portugal) in 2022 aimed to review the most recent scientific developments in this field and to identify future challenges, particularly in relation to taxonomy, age, growth, chemical composition (i.e., DNA, proteomics, stable isotopes, trace elements) and physical (i.e., structural) analyses. In terms of taxonomy, new techniques (e.g., 3D geometric morphometrics) for identifying cephalopods from their beaks are being developed with promising results, although the need for experts and reference collections of cephalopod beaks will continue. The use of beak microstructure for age and growth studies has been validated. Stable isotope analyses on beaks have proven to be an excellent technique to get valuable information on the ecology of cephalopods (namely habitat and trophic position). Trace element analyses is also possible using beaks, where concentrations are significantly lower than in other tissues (e.g., muscle, digestive gland, gills). Extracting DNA from beaks was only possible in one study so far. Protein analyses can also be made using cephalopod beaks. Future challenges in research using cephalopod beaks are also discussed.

Large size (>100-μm) microplastics are not biomagnifying in coastal marine food webs of British Columbia, Canada

Microplastics (MPs) contamination in marine environments is of increasing concern, as plastic particles are globally ubiquitous across ecosystems. A large variety of aquatic taxa ingest MPs, but the extent to which animals accumulate and transfer MPs through food webs is largely unknown. In this study, we quantified MP uptake in bivalves, crabs, echinoderms, and fish feeding at different trophic levels at three sites on southern Vancouver Island. We paired stable-isotope food web analysis with MP concentrations in digestive tracts across all trophic levels and in fish livers. We then used Bayesian generalized linear mixed models to explore whether bioaccumulation and biomagnification were occurring. Our results showed that MPs (100-5000 μm along their longest dimension) are not biomagnifying in marine coastal food webs, with no correlation between the digestive tract or fish liver MP concentrations and trophic position of the various species. Ecological traits did, however, affect microplastic accumulation in digestive tracts, with suspension feeder and smaller-bodied planktivorous fish ingesting more MPs by body weight. Trophic transfer occurred between prey and predator for rockfish, but higher concentrations in full stomachs compared with empty ones suggested rapid excretion of ingested MPs. Collectively, our findings suggested the movement of MP through marine food webs is facilitated by species-specific mechanisms, with contamination susceptibility a function of species biology, not trophic position. Furthermore, the statistical methods we employ, including machine learning for classifying unknown particles and a probabilistic way to account for background contamination, are universally applicable to the study of microplastics. Our findings advance understanding of how MPs enter and move through aquatic food webs, suggesting that lower-trophic-level animals are more at risk of ingesting >100-μm MPs, relative to higher-trophic-level animals. Our work also highlights the need to advance the study of <100-μm MPs, which are still poorly understood and may need to be considered separately in ecological risk assessments.

Ontogenetic shift in diet and trophic role of Raja clavata inferred by stable isotopes and stomach content analysis in the Sea of Marmara

Trophic ecology studies on predator-prey interactions reveal insights into ecological communities and help understand a species' role in the food web by contributing to improved fisheries management and conservation capabilities. Understanding the ecological role of overexploited and endangered predators is essential to deciphering how their feeding behaviour influences food web dynamics. In this study, the authors investigated the feeding behaviour of the common and IUCN-listed Near Threatened (NT) thornback ray Raja clavata, using carbon and nitrogen stable isotope and stomach content analysis (SCA). It has recently suffered an 87% decline in reported catches from the Sea of Marmara within the last decade. These results show that thornback ray mainly feeds on teleost species, except in summer, with both methods showing this species changes its diet ontogenetically by SCA. This ontogenetic diet shift was at lengths 40-50 cm by changing group preferences from Crustacea to Teleostei. MixSIAR results showed that both adult and juvenile individuals of R. clavata feed mainly on the crustaceans, but the contribution of teleosts represented by Trachurus sp. was very low (<15%). The trophic position increased total length and was higher than other batoid species in the Sea of Marmara.

Typical scaled food web structure and total mercury enrichment characteristics in Xingkai Lake, China

Different from the widely used constant discrimination factor Δ¹⁵N = 3.4‰ between two adjacent trophic positions (TPs), a scaled Δ¹⁵N framework for evaluating the TP of species was developed in 2014, that is, the Δ¹⁵N between two adjacent TPs decreases as the TP increases which is considered to be in closer conformity to the trophic cascade in the natural food web. In this study, we compared the two TP calculation methods and then reconsidered the evaluation of the trophic magnification factors (TMFs). Our results show that the TP_scaled value is higher and the TMFs value is lower under the scaled Δ¹⁵N framework, indicating that the TMFs value under the constant Δ¹⁵N framework is often overestimated. We further constructed a diet proportion food web model, which shows that species with lower TP has higher contribution rate as food sources. In Xingkai Lake, the enrichment process of mercury in the food web is not strictly consistent with the diet proportion of the food web. Based on the diet proportion food web model and the mercury enrichment model, it can be found that the White shrimp (Exopalaemon modestus) is not only an important food source, but also the main source of mercury transmission in the food web. Overall, our findings have quantified the food web construction and thus facilitated a better understanding of the interaction between the diet proportion and the bio-concentration in the food web.

Amino acid nitrogen and carbon isotope data: Potential and implications for ecological studies

Explaining food web dynamics, stability, and functioning depend substantially on understanding of feeding relations within a community. Bulk stable isotope ratios (SIRs) in natural abundance are well-established tools to express direct and indirect feeding relations as continuous variables across time and space. Along with bulk SIRs, the SIRs of individual amino acids (AAs) are now emerging as a promising and complementary method to characterize the flow and transformation of resources across a diversity of organisms, from microbial domains to macroscopic consumers. This significant AA-SIR capacity is based on empirical evidence that a consumer's SIR, specific to an individual AA, reflects its diet SIR coupled with a certain degree of isotopic differences between the consumer and its diet. However, many empirical ecologists are still unfamiliar with the scope of applicability and the interpretative power of AA-SIR. To fill these knowledge gaps, we here describe a comprehensive approach to both carbon and nitrogen AA-SIR assessment focusing on two key topics: pattern in AA-isotope composition across spatial and temporal scales, and a certain variability of AA-specific isotope differences between the diet and the consumer. On this basis we review the versatile applicability of AA-SIR to improve our understanding of physiological processes as well as food web functioning, allowing us to reconstruct dominant basal dietary sources and trace their trophic transfers at the specimen and community levels. Given the insightful and opportunities of AA-SIR, we suggest future applications for the dual use of carbon and nitrogen AA-SIR to study more realistic food web structures and robust consumer niches, which are often very difficult to explain in nature.

Trophic structure and origin of resources of soil macrofauna in the salt marsh of the Wadden Sea: a stable isotope (15N, 13C) study

Salt marshes exist along the gradient of the marine mudflat to the terrestrial dunes, with a gradient of shore height and associated plant zonation. The lower salt marsh (LSM) extends from the mean high tidal level to 35 cm above that level and is followed by the upper salt marsh (USM). Despite changes in the amount of allochthonous marine input and in abiotic conditions, little is known about changes in the trophic structure and used of basal resources by the soil macrofauna along marine-terrestrial boundaries. Natural variations in carbon stable isotope ratios (δ13C signatures) allow insight into basal resources of consumers such as marine algae, terrestrial C3 and C4 photosynthesising plants. Furthermore, variations in nitrogen stable isotope ratios (δ15N signatures) allow insight into the trophic position of consumers. We investigated spatial and temporal changes in stable isotope signatures in salt marsh soil macrofauna of the island of Spiekeroog, German Wadden Sea. The range of δ15N signatures indicated no changes in food chain length across salt marsh zones with consumers in both zones comprising primary decomposers, secondary decomposers and first order predators. However, the trophic position of individual species changed between zones, but in particular with season. Contrasting δ15N signatures, the range in δ13C signatures in the LSM was twice that in the USM indicating a wider range of resources consumed. Bayesian mixing models indicated predominant autochthonous resource use in both the LSM and USM, with the use of marine allochthonous resources never exceeding 29.6%. However, the models also indicate an increase in the use of marine resources in certain species in the LSM with no use in the USM. Overall, the results indicate that the resource use of salt marsh macrofauna varies more in space than in time, with the food web being generally based on autochthonous rather than allochthonous resources. However, there also is trophic plasticity in certain species across both temporal and spatial scales including variations in the use of allochthonous resources. Generally, however, marine input contributes little to the nutrition of salt marsh soil macroinvertebrates.

Network analysis suggests changes in food web stability produced by bottom trawl fishery in Patagonia

Demersal fisheries are one of the top anthropic stressors in marine environments. In the long term, some species are more vulnerable to fishery impacts than others, which can lead to permanent changes on the food web. The trophic relationships between predator and prey constitute the food web and it represents a network of the energy channels in an ecosystem. In turn, the network structure influences ecosystem diversity and stability. The first aim of this study was to describe for the first time the food web of the San Jorge Gulf (Patagonia Argentina) with high resolution, i.e. to the species level when information is available. The San Jorge Gulf was subject to intense fisheries thus our second aim is to analyse the food web structure with and without fishery to evaluate if the bottom-trawl industrial fishery altered the network structure and stability. We used several network metrics like: mean trophic level, omnivory, modularity and quasi-sign stability. We included these metrics because they are related to stability and can be evaluated using predator diets that can weight the links between predators and prey. The network presented 165 species organized in almost five trophic levels. The inclusion of a fishery node adds 69 new trophic links. All weighted and unweighted metrics showed differences between the two networks, reflecting a decrease in stability when fishery was included in the system. Thus, our results suggested a probable change of state of the system. The observed changes in species abundances since the fishery was established, could represent the state change predicted by network analysis. Our results suggests that changes in the stability of food webs can be used to evaluate the impacts of human activity on ecosystems.

Bioaccumulation of mercury along continuous fauna trophic levels in the Yellow River Estuary and adjacent sea indicated by nitrogen stable isotopes

Mercury (Hg), and its organic forms, are some of the most hazardous elements, with strong toxicity, persistence, and biological accumulation in marine organisms. Hg accumulation in continuous trophic levels (TL) in marine food chains remains unclear. In this study, individual invertebrate and fish samples collected from the Yellow River Estuary adjacent sea were grouped into continuous TL ranges, and the bioaccumulations of total Hg (THg) and methylmercury (MeHg) were analyzed. The trophic magnification factor in invertebrates and fish was 1.40 and 1.72 for THg, and 2.56 and 2.17 for MeHg, indicating that both THg and MeHg were significantly biomagnified with increasing TL in both invertebrates and fish through trophic transfer. To evaluate the health risk of seafood consumption, the target hazard quotient (THQ) was calculated. Increasing THQ values indicated that the health risks of invertebrate and fish consumption in humans, especially children, were both elevated with increasing TL. THQ values > 1 indicated that consumption of invertebrates at a TL above 4.0 and fish above 4.5 may pose a relatively higher risk for children. Therefore, the consumption of both individual invertebrates and fish at high trophic positions may present greater health risk, especially in young children.

Determination of the geographical origin of Trachinotus ovatus and Pampus argenteus in China by multi-element and stable isotope analysis

This study aimed to determine whether Trachinotus ovatus and Pampus argenteus could be differentiated by multi-element composition or stable isotope ratio analysis of δ¹³C and δ¹⁵N. The multi-element analysis values of a total of 60 Pampus argenteus samples from three sites and 60 Trachinotus ovatus samples from four sites around China were determined, and the other 60 samples of Pampus argenteus and 51 samples of Trachinotus ovatus were tested by principal component analysis (PCA) to estimate the accuracy of origin identification. The results showed that the cross-validation accuracy rate is 92.2% for the Pampus argenteus and 98.3% for the Trachinotus ovatus. Stable isotope analysis of δ¹³C and δ¹⁵N also can distinguish Trachinotus ovatus from different geographical origins. These results showed that the usefulness of multi-element and stable isotope analysis as indicators for authenticating the geographical origin of two pomfrets in China.

Spatial variation in food web structure in a recovering marine ecosystem

Spatial heterogeneity in food web structure and interactions may reconcile spatial variation in population and community dynamics in large marine ecosystems. In order to assess food web contributions to the different community recovery dynamics along the Newfoundland and Labrador shelf ecosystem, we quantified species interactions using stable isotope mixing models and food web metrics within three sub-regions. Representative samples of each species caught in trawls and plankton tows were analyzed for stomach contents and stable isotope ratios (δ15N and δ13C) to parameterize isotope mixing models. Regional variation, highlighted by the diets of three economically important species, was observed such that the southern region demonstrated a variety of trophic pathways of nutrient flow into the higher food web while the diets of fish in the northern regions were typically dominated by one or two pathways via dominant prey species, specifically shrimp (Pandalus sp.) and hyperiids. Food web metrics indicated that the low-diversity northern regions had higher connectance and shorter food chain lengths. This observed regional variation contributes to our understanding of the role of specific forage species to the ecosystem which is an essential contribution towards ecosystem-based management decisions.

Ecological Impacts of Altered Stream Hydrogeomorphic Characteristics Extend Beyond the Channel Boundary: Evidence From Urban Streams of Columbus, OH, United States

Urbanization in stream catchments can have strong effects on stream channel hydrogeomorphic features including channel dimensions, channel-floodplain connectivity, and flood regime. However, the consequences of hydrogeomorphic alterations on aquatic-terrestrial subsidy dynamics are largely unexplored. We examined the associations among hydrogeomorphic characteristics, emergent aquatic insect assemblages, and the density and trophic dynamics of riparian spiders of the family Tetragnathidae at 23 small urban stream reaches in the Columbus, OH (United States) Metropolitan Area. Naturally abundant stable isotopes of 13C and 15N were used to quantify the relative contribution of aquatically derived energy (i.e., nutritional pathways deriving from algae) to tetragnathid spiders and their trophic position. Bankfull discharge was negatively related to both emergence rate and family richness. On average, tetragnathid spiders relied on aquatically derived energy for 36% of their nutrition, with the greatest reliance found for spiders next to channels with wider flood-prone widths and proportionally fewer emergent insects of the family Chironomidae. Mean emergent aquatic insect reliance on aquatically derived energy was 32% and explained 44% of the variation in tetragnathid aquatically derived energy. A positive relationship between δ13C of tetragnathid spiders and emergent insects provides additional evidence of tetragnathid reliance on emergent insects. Mean tetragnathid trophic position was 2.85 and was positively associated with channel sinuosity and negatively associated with aquatic insect emergence rate. Sinuosity was also positively related to aquatically derived energy of emergent aquatic insects; as well as emergent insect family richness; % Ephemeroptera, Plecoptera, and Trichoptera (EPT); and aquatic insect emergence rate; implicating instream habitat-mediated shifts in emergent aquatic insect communities as an indirect mechanistic link between hydrogeomorphic processes and spiders. Our findings underscore that the impacts of stream hydrogeomorphic alterations can cascade into terrestrial food webs. These results suggest that monitoring and restoration of fluvial geomorphic form and function (e.g., sinuosity, slope, and hydrology) confer benefits to both aquatic and terrestrial riparian ecosystems in urban catchments.

Changes in trophic structure of an exploited fish community at the centennial scale are linked to fisheries and climate forces

Understanding how marine food webs are affected by anthropogenic stressors is an important steppingstone toward the improved management of natural resources. Stable isotope analysis of historical and modern samples spanning a century indicated that the niche width of an exploited fish community increased after the expansion of New Zealand fisheries. Since the 2000s most species increased their reliance on food webs supported by pelagic production, compared to coastal production supported by macroalgae, and shifted to a higher trophic level. Overall changes were coincident with ocean warming, climate oscillations, prey abundance and fishing intensity, but their effects were specific to each fish assemblage analyzed. Data derived from historical samples revealed how anthropogenic stressors can drive long-term shifts in the trophic structure of an exploited fish community.

Life in the slow lane: Field Metabolic Rate and Prey Consumption Rate of the Greenland Shark (Somniosus microcephalus) modeled using Archival Biologgers

Field metabolic rate (FMR) is a holistic measure of metabolism representing the routine energy utilization of a species living within a specific ecological context, thus providing insight into its ecology, fitness and resilience to environmental stressors. For animals which cannot be easily observed in the wild, FMR can also be used in concert with dietary data to quantitatively assess their role as consumers, improving understanding of the trophic linkages that structure food webs and allowing for informed management decisions. Here we modeled the FMR of Greenland sharks (Somniosus microcephalus) equipped with biologger packages or pop-up archival satellite tags (PSATs) in two coastal inlets of Baffin Island (Nunavut) using metabolic scaling relationships for mass, temperature and activity. We estimated that Greenland sharks had an overall mean FMR of 21.67±2.30 mgO2h-1kg-0.84 (n=30; 1-4 day accelerometer package deployments) while residing inside these cold-water fjord systems in the late summer, and 25.48±0.47 mgO2h-1kg-0.84 (n=6; PSATs) over an entire year. When considering prey consumption rate, an average shark in these systems (224kg) requires a maintenance ration of 61-193g of fish or marine mammal prey daily. As a lethargic polar species, these low FMR estimates, and corresponding prey consumption estimates suggest Greenland sharks require very little energy to sustain themselves under natural conditions. These data provide the first characterization of the energetics and consumer role of this vulnerable and understudied species in the wild, essential given growing pressures from climate change and expanding commercial fisheries in the Arctic.

EcoDiet: A hierarchical Bayesian model to combine stomach, biotracer, and literature data into diet matrix estimation

Although quantifying trophic interactions is a critical path to understanding and forecasting ecosystem functioning, fitting trophic models to field data remains challenging. It requires flexible statistical tools to combine different sources of information from the literature and fieldwork samples. We present EcoDiet, a hierarchical Bayesian modeling framework to simultaneously estimate food-web topology and diet composition of all consumers in the food web, by combining (1) a priori knowledge from the literature on both food-web topology and diet proportions; (2) stomach content analyses, with frequencies of prey occurrence used as the primary source of data to update the prior knowledge on the topological food-web structure; (3) and biotracers data through a mixing model (MM). Inferences are derived in a Bayesian probabilistic rationale that provides a formal way to incorporate prior information and quantifies uncertainty around both the topological structure of the food web and the dietary proportions. EcoDiet was implemented as an open-source R package, providing a user-friendly interface to execute the model, as well as examples and guidelines to familiarize with its use. We used simulated data to demonstrate the benefits of EcoDiet and how the framework can improve inferences on diet matrix by comparison with classical network MM. We applied EcoDiet to the Celtic Sea ecosystem, and showed how combining multiple data types within an integrated approach provides a more robust and holistic picture of the food-web topology and diet matrices than the literature or classical MM approach alone. EcoDiet has the potential to become a reference method for building diet matrices as a preliminary step of ecosystem modeling and to improve our understanding of prey-predator interactions.

Effect of trophic position on mercury concentrations in bottlenose dolphins (Tursiops truncatus) from the northern Gulf of Mexico

Marine species from the Gulf of Mexico often have higher mercury (Hg) concentrations than conspecifics in the Atlantic Ocean. Spatial differences in Hg sources, environmental conditions, and microbial communities influence both Hg methylation rates and the bioavailability of Hg to organisms at the base of the food web. Mercury bioaccumulates within organisms and biomagnifies in marine food webs, and therefore reaches the greatest concentrations in long-lived marine carnivores, such as dolphins. In this study, we explored whether differences in trophic position and foraging habitat among bottlenose dolphins (Tursiops truncatus) from the northern Gulf of Mexico (nGoM) contributed to the observed variation in skin total Hg (THg) concentrations. Using the δ¹³C and δ³⁴S values in dolphin skin, we assigned deceased stranded dolphins from Florida (FL; n = 29) and Louisiana (LA; n = 72) to habitats (estuarine, barrier island, and coastal) east and west of the Mississippi River Delta (MRD). We estimated the mean trophic position of dolphins from each habitat using δ¹⁵N values from stranded dolphin skin and tissues of primary consumers taken from the literature following a Bayesian framework. Finally, we compared trophic positions and THg concentrations among dolphins from each habitat, accounting for sex and body length. Estimated marginal mean THg concentrations (μg/g dry weight) were greatest in dolphins assigned to the coastal habitat and estuarine habitats east of the MRD (range: 2.59-4.81), and lowest in dolphins assigned to estuarine and barrier island habitats west of the MRD (range: 0.675-0.993). On average, dolphins from habitats with greater THg concentrations also had higher estimated trophic positions, except for coastal dolphins. Our results suggest that differences in trophic positions and foraging habitats contribute to spatial variability in skin THg concentrations among nGoM bottlenose dolphins, however, the relative influence of these factors on THg concentrations are not easily partitioned.

Depth and habitat are important drivers of abundance for predatory reef fish off Pemba Island, Tanzania

Coral reefs across the world face significant threats from fishing and climate change, which tends to be most acute in shallower waters. This is the case off Pemba Island, Tanzania, yet the effects of these anthropogenic stressors on the distribution and abundance of economically and ecologically important predatory reef fish, including how they vary with depth and habitat type, is poorly understood. Thus, we deployed 79 baited remote underwater videos (BRUVs) in variable water depths and habitats off Pemba Island, and modeled the effects of depth and habitat on abundance of predatory reef fish. Predatory reef fish types/taxa were significantly predicted by depth and habitat types. Habitats in relatively deeper waters and dominated by hard and soft corals hosted high species richness and abundance of predatory reef fish types/taxa compared to mixed sandy and rubble habitats. The findings add to the growing evidence that deep waters around coral reefs are important habitats for predatory reef fish. Thus, careful management, through effective area and species protection measures, is needed to prevent further depletion of predatory reef-associated fish populations and to conserve this biologically important area.