Satellite sun-induced chlorophyll fluorescence detects early response of winter wheat to heat stress in the Indian Indo-Gangetic Plains

Response of solar-induced chlorophyll fluorescence-based spatial and temporal evolution of vegetation in Xinjiang to multiscale drought

Climate change and human activities have increased droughts, especially overgrazing and deforestation, which seriously threaten the balance of terrestrial ecosystems. The ecological carrying capacity and vegetation cover in the arid zone of Xinjiang, China, are generally low, necessitating research on vegetation response to drought in such arid regions. In this study, we analyzed the spatial and temporal characteristics of drought in Xinjiang from 2001 to 2020 and revealed the response mechanism of SIF to multi-timescale drought in different vegetation types using standardized precipitation evapotranspiration index (SPEI), solar-induced chlorophyll fluorescence (SIF), normalized difference vegetation index (NDVI), and enhanced vegetation index (EVI) data. We employed trend analysis, standardized anomaly index (SAI), Pearson correlation, and trend prediction techniques. Our investigation focused on the correlations between GOSIF (a new SIF product based on the Global Orbital Carbon Observatory-2), NDVI, and EVI with SPEI12 for different vegetation types over the past two decades. Additionally, we examined the sensitivities of vegetation GOSIF to various scales of SPEI in a typical drought year and predicted future drought trends in Xinjiang. The results revealed that the spatial distribution characteristics of GOSIF, normalized difference vegetation index (NDVI), and enhanced vegetation index (EVI) were consistent, with mean correlations with SPEI at 0.197, 0.156, and 0.128, respectively. GOSIF exhibited the strongest correlation with SPEI, reflecting the impact of drought stress on vegetation photosynthesis. Therefore, GOSIF proves advantageous for drought monitoring purposes. Most vegetation types showed a robust response of GOSIF to SPEI at a 9-month scale during a typical drought year, with grassland GOSIF being particularly sensitive to drought. Our trend predictions indicate a decreasing trend in GOSIF vegetation in Xinjiang, coupled with an increasing trend in drought. This study found that compared with that of the traditional greenness vegetation index, GOSIF has obvious advantages in monitoring drought in the arid zone of Xinjiang. Furthermore, it makes up for the lack of research on the mechanism of vegetation GOSIF response to drought on multiple timescales in the arid zone. These results provide strong theoretical support for investigating the monitoring, assessment, and prediction of vegetation response to drought in Xinjiang, which is vital for comprehending the mechanisms of carbon and water cycles in terrestrial ecosystems.

Physiological dynamics dominate the relationship between solar-induced chlorophyll fluorescence and gross primary productivity along the nitrogen gradient in cropland

Solar-induced chlorophyll fluorescence (SIF) has been found to be robustly correlated with gross primary productivity (GPP) based on satellite datasets. However, it is unclear whether nitrogen affects the relationship between SIF and GPP at the canopy scale. Here, seasonal dynamics of SIF, GPP, vegetation physiology and canopy structure were measured synchronously throughout growing season along the nitrogen gradient in a rice paddy of China's subtropical region. Our results found that the slope of SIF against GPP was not constant, showing an increasing trend from low to high nitrogen levels. The sensitivity of SIF to nitrogen was larger than that of GPP. Nitrogen enrichment versus deficiency had asymmetrical effects on the SIF-GPP relationship. The steeper slope of SIF against GPP under high nitrogen level was mainly attributed to the promotion of canopy fluorescence efficiency (ΦF) rather than the variation of canopy fluorescence escape probability (Fesc). These results emphasize the vital role of nitrogen in exploring mechanisms underlying SIF dynamics and decoding GPP from SIF.

Temporal and spatial evolution simulation and attribution analysis of vegetation photosynthesis over the past 21 years based on satellite SIF data: a case study from Asia

Photosynthesis in vegetation is one of the key processes in maintaining regional ecological balance and climate stability, and it is of significant importance for understanding the health of regional ecosystems and addressing climate change. Based on 2001-2021 Global OCO-2 Solar-Induced Fluorescence (GOSIF) dataset, this study analyzed spatiotemporal variations in Asian vegetation photosynthesis and its response to climate and human activities. Results show the following: (1) From 2001 to 2021, the overall photosynthetic activity of vegetation in the Asian region has shown an upward trend, exhibiting a stable distribution pattern with higher values in the eastern and southern regions and lower values in the central, western, and northern regions. In specific regions such as the Turgen Plateau in northwestern Kazakhstan, Cambodia, Laos, and northeastern Syria, photosynthesis significantly declined. (2) Meteorological factors influencing photosynthesis exhibit differences based on latitude and vertical zones. In low-latitude regions, temperature is the primary driver, while in mid-latitude areas, solar radiation and precipitation are crucial. High-latitude regions are primarily influenced by temperature, and high-altitude areas depend on precipitation and solar radiation. (3) Human activities (56.44%) have a slightly greater impact on the dynamics of Asian vegetation photosynthesis compared to climate change (43.56%). This research deepens our comprehension of the mechanisms behind the fluctuations in Asian vegetation photosynthesis, offering valuable perspectives for initiatives in environmental conservation, sustainability, and climate research.

Dynamics of solar-induced chlorophyll fluorescence (SIF) and its response to meteorological drought in the Yellow River Basin

Solar-induced chlorophyll fluorescence (SIF) has been used since its discovery to characterize vegetation photosynthesis and is an effective tool for monitoring vegetation dynamics. Its response to meteorological drought enhances our comprehension of the ecological consequences and adaptive mechanisms of plants facing water scarcity, informing more efficient resource management and efforts in mitigating climate change. This study investigates the spatial and temporal patterns of SIF and examines how vegetation SIF in the Yellow River Basin (YRB) responds to meteorological drought. The findings reveal a gradual southeast-to-northwest decline in SIF across the Yellow River Basin, with an overall increase-from 0.1083 W m-2μm-1sr-1 in 2001 to 0.1468 W m-2μm-1sr-1 in 2019. Approximately 96% of the YRB manifests an upward SIF trend, with 75% of these areas reaching statistical significance. The Standardized Precipitation Evapotranspiration Index (SPEI) at a time scale of 4 months (The SPEI-4), based on the Liang-Kleeman information flow method, is identified as the most suitable drought index, adeptly characterizing the causal relationship influencing SIF variations. As drought intensified, the SPEI-4 index markedly deviated from the baseline, resulting in a decrease in SIF values to their lowest value; subsequently, as drought lessened, it gravitated towards the baseline, and SIF values began to gradually increase, eventually recovering to near their annual maximum. The key finding is that the variability of SIF with SPEI is relatively pronounced in the early growing season, with forests demonstrating superior resilience compared to grasslands and croplands. The responsiveness of vegetation SIF to SPEI can facilitate the establishment of effective drought early warning systems and promote the rational planning of water resources, thereby mitigating the impacts of climate change.

Ground far-red sun-induced chlorophyll fluorescence and vegetation indices in the US Midwestern agroecosystems

Sun-induced chlorophyll fluorescence (SIF) provides an opportunity to study terrestrial ecosystem photosynthesis dynamics. However, the current coarse spatiotemporal satellite SIF products are challenging for mechanistic interpretations of SIF signals. Long-term ground SIF and vegetation indices (VIs) are important for satellite SIF validation and mechanistic understanding of the relationship between SIF and photosynthesis when combined with leaf- and canopy-level auxiliary measurements. In this study, we present and analyze a total of 15 site-years of ground far-red SIF (SIF at 760 nm, SIF760) and VIs datasets from soybean, corn, and miscanthus grown in the U.S. Corn Belt from 2016 to 2021. We introduce a comprehensive data processing protocol, including different retrieval methods, calibration coefficient adjustment, and nadir SIF footprint upscaling to match the eddy covariance footprint. This long-term ground far-red SIF and VIs dataset provides important and first-hand data for far-red SIF interpretation and understanding the mechanistic relationship between far-red SIF and canopy photosynthesis across various crop species and environmental conditions.

Water stress significantly affects the diurnal variation of solar-induced chlorophyll fluorescence (SIF): A case study for winter wheat

Remote sensing of Solar-induced chlorophyll fluorescence (SIF) has been widely used in estimating Gross Primary Productivity (GPP) and detecting stress in terrestrial ecosystems. Water stress adversely impacts the growth, development, and productivity of a plant. Recently, the characterizing and understanding of the diurnal cycling of plant functioning and ecosystem processes has been explored using SIF. However, the diurnal response of SIF to different levels of water stress remains unclear. This study conducted field experiments on winter wheat by subjecting it to different levels of water stress including well-watered (CK) and, mild, moderate, and severe water stress (D1, D2, D3), and collected the spectral data using an automated SIF measurement system. The results observed the strong SIF-PAR (photosynthetically active radiation) correlations and that these relationships gradually decoupled with increasing water stress, which further decreased the accuracy of temporal upscaling of far-red SIF from an instantaneous to daily scale. To quantify the characteristics of diurnal far-red SIF, five indices including peak time, peak value, curve opening coefficient (leading coefficient of the parabola), and left/right slopes of the peak were proposed. The results demonstrated that diurnal far-red SIF was characterized by an earlier peak time, decreasing peak value, wider curve opening, and flattening right slope from the CK plot to the D3 plot. There were certain mechanisms linking the different indices, for example, between peak size and opening coefficient. Furthermore, the response of far-red SIF to water stress was most pronounced at noon. SIF/PAR exhibited a more significant response to varying water stress compared to far-red SIF, which mitigated the negative influence of PAR variations on diurnal SIF. These findings contribute to the monitoring of plant water dynamics at fine temporal scales.

Solar-induced chlorophyll fluorescence captures the effects of elevated ozone on canopy structure and acceleration of senescence in soybean

Solar-induced chlorophyll fluorescence (SIF) provides an opportunity to rapidly and non-destructively investigate how plants respond to stress. Here, we explored the potential of SIF to detect the effects of elevated O3 on soybean in the field where soybean was subjected to ambient and elevated O3 throughout the growing season in 2021. Exposure to elevated O3 resulted in a significant decrease in canopy SIF at 760 nm (SIF760), with a larger decrease in the late growing season (36%) compared with the middle growing season (13%). Elevated O3 significantly decreased the fraction of absorbed photosynthetically active radiation by 8-15% in the middle growing season and by 35% in the late growing stage. SIF760 escape ratio (fesc) was significantly increased under elevated O3 by 5-12% in the late growth stage due to a decrease of leaf chlorophyll content and leaf area index. Fluorescence yield of the canopy was reduced by 5-11% in the late growing season depending on the fesc estimation method, during which leaf maximum carboxylation rate and maximum electron transport were significantly reduced by 29% and 20% under elevated O3. These results demonstrated that SIF could capture the elevated O3 effect on canopy structure and acceleration of senescence in soybean and provide empirical support for using SIF for soybean stress detection and phenotyping.

Synchronous Changes of GPP and Solar-Induced Chlorophyll Fluorescence in a Subtropical Evergreen Coniferous Forest

Using in situ near-surface observations of solar-induced chlorophyll fluorescence (SIF) and gross primary productivity (GPP) of a subtropical evergreen coniferous forest in southern China, this study analyzed the dynamics of SIF, GPP and their environmental responses, and explored the potential of SIF in characterizing the variation of GPP. The results showed that SIF and GPP have similar diurnal and seasonal variation and both reach the highest value in summer, indicating that the SIF can be applied to indicate the seasonal variation of GPP for the subtropical evergreen co-niferous. With the increase in temporal scale, the correlation between SIF and GPP becomes more linear. The diurnal variations of both SIF and GPP were characterized by photosynthetically active radiation (PAR), the seasonal variations of SIF and GPP were influenced by air temperature (Ta) and PAR. Probably due to the absent of drought stress during the study period, no significant correlation was detected between soil water content (SWC) and either SIF or GPP. With the in-crease in Ta, PAR or SWC, the linear correlation between the SIF and GPP gradually decreased, and when Ta or PAR was relatively higher, the correlation between SIF and GPP become weakly. Further research is still needed to illustrate the relationship between SIF and GPP under drought condition which occurred frequently in this region based on longer observation.

From remotely-sensed solar-induced chlorophyll fluorescence to ecosystem structure, function, and service: Part II-Harnessing data

Although our observing capabilities of solar-induced chlorophyll fluorescence (SIF) have been growing rapidly, the quality and consistency of SIF datasets are still in an active stage of research and development. As a result, there are considerable inconsistencies among diverse SIF datasets at all scales and the widespread applications of them have led to contradictory findings. The present review is the second of the two companion reviews, and data oriented. It aims to (1) synthesize the variety, scale, and uncertainty of existing SIF datasets, (2) synthesize the diverse applications in the sector of ecology, agriculture, hydrology, climate, and socioeconomics, and (3) clarify how such data inconsistency superimposed with the theoretical complexities laid out in (Sun et al., 2023) may impact process interpretation of various applications and contribute to inconsistent findings. We emphasize that accurate interpretation of the functional relationships between SIF and other ecological indicators is contingent upon complete understanding of SIF data quality and uncertainty. Biases and uncertainties in SIF observations can significantly confound interpretation of their relationships and how such relationships respond to environmental variations. Built upon our syntheses, we summarize existing gaps and uncertainties in current SIF observations. Further, we offer our perspectives on innovations needed to help improve informing ecosystem structure, function, and service under climate change, including enhancing in-situ SIF observing capability especially in "data desert" regions, improving cross-instrument data standardization and network coordination, and advancing applications by fully harnessing theory and data.

A New Method for Sequential Fractionation of Nitrogen in Drained Organic (Peat) Soils

The aim of this study was to assess the transformation of organic matter in organic soils undergoing a phase of secondary transformation, based on a new method of nitrogen compound fractionation. Laboratory tests were carried out for 31 layers of muck (after secondary transformation) and peat (parent material of the soil) of drained organic soils (peat). The new method consists of sequential extraction in the following steps: (1) 0.5 M K2SO4 (extraction at room temperature); (2) 0.25 M H2SO4 (hot hydrolysis) (3) 3.0 M H2SO4 (hot hydrolysis); and (4) concentrated H2SO4 (mineralization of the post-extraction residue). As a result of the extraction process, the following fractions (operating forms) were obtained: mineral nitrogen (Nmin), dissolved organic nitrogen (N-DON), readily hydrolyzing organic nitrogen (N-RH), non-readily hydrolyzing organic nitrogen (N-NRH), and non-hydrolyzing organic nitrogen (N-NH). The study demonstrates the usefulness of the applied method for assessing the degree of secondary transformation of drained organic soils. The obtained results of nitrogen fractionation indicate the significant dynamics of nitrogen forms' transformations and a significant relationship between these forms and soil properties. Nitrogen transformation processes during the secondary transformation process after dehydration resulted in an increase in the share of N-DON (on average: 1.47% of Norg for the peat layers and 2.97% of Norg for the muck layers) and in an increase in the share of NRHON (on average: 20.7% of Norg for the peat layers and 33.5% of Norg for the muck layers). The method of sequential nitrogen fractionation used in our study allowed us to define an index determining the degree of transformation of organic matter in peat after drying. We defined it as the ratio of readily hydrolyzable forms (the fraction is very variable in the secondary transformation process) to non-readily hydrolyzable forms (relatively stable fraction in the secondary transformation process): N-RH/N-NRH. The average value of this index was significantly lower in the peat layers (0.64 on average) than in the muck beds (1.04 on average). The value of this index is significantly correlated with soil properties: bulk density (R2 = 0.470); general porosity (R2 = 0.503); total carbon content (TC) (R2 = 0.425); total carbon to total nitrogen ratio (TC/TN) (R2 = 0.619); and share of carbon of humic substances (C-HS) (R2 = 0.466). We believe that the method of sequential nitrogen fractionation may be useful for other soils and organic materials.

Early Monitoring of Forest Wood-Boring Pests with Remote Sensing

Wood-boring pests (WBPs) pose an enormous threat to global forest ecosystems because their early stage infestations show no visible symptoms and can result in rapid and widespread infestations at later stages, leading to large-scale tree death. Therefore, early-stage WBP detection is crucial for prompt management response. Early detection of WBPs requires advanced and effective methods like remote sensing. This review summarizes the applications of various remote sensing sensors, platforms, and detection methods for monitoring WBP infestations. The current capabilities, gaps in capabilities, and future potential for the accurate and rapid detection of WBPs are highlighted.

Exploring plant responses to abiotic stress by contrasting spectral signature changes

In this study, daily changes over a short period and diurnal progression of spectral reflectance at the leaf level were used to identify spring wheat genotypes (Triticum aestivum L.) susceptible to adverse conditions. Four genotypes were grown in pots experiments under semi-controlled conditions in Chile and Spain. Three treatments were applied: i) control (C), ii) water stress (WS), and iii) combined water and heat shock (WS+T). Spectral reflectance, gas exchange and chlorophyll fluorescence measurements were performed on flag leaves for three consecutive days at anthesis. High canopy temperature ( H _CT ) genotypes showed less variability in their mean spectral reflectance signature and chlorophyll fluorescence, which was related to weaker responses to environmental fluctuations. While low canopy temperature ( L _CT ) genotypes showed greater variability. The genotypes spectral signature changes, in accordance with environmental fluctuation, were associated with variations in their stomatal conductance under both stress conditions (WS and WS+T); L _CT genotypes showed an anisohydric response compared that of H _CT , which was isohydric. This approach could be used in breeding programs for screening a large number of genotypes through proximal or remote sensing tools and be a novel but simple way to identify groups of genotypes with contrasting performances.

Effects of Low Temperature on the Relationship between Solar-Induced Chlorophyll Fluorescence and Gross Primary Productivity across Different Plant Function Types

Solar-induced chlorophyll fluorescence (SIF) has been recognized as a proxy of gross primary production (GPP) across various terrestrial biomes. However, the effects of low temperature on SIF and GPP among different plant function types (PFTs) have not yet been well-explored. To gain a better understanding of the relationship between SIF and GPP, we investigated the variation in the GPP/SIF ratio in response to low-temperature conditions using satellite and tower-based datasets. Based on the TROPOMI SIF product and FLUXCOM GPP data, we found that the SIF and GPP exhibited consistent seasonal and spatial patterns, while the GPP/SIF ratio differed for different PFTs. The GPP/SIF ratio for forest types was generally higher than 10 gC·d−1·mw−1·nm·sr, whereas the GPP/SIF ratio for grass and crop types was generally lower than 10 gC·d−1·mw−1·nm·sr. In addition, there were noticeable differences in the seasonal pattern of the GPP/SIF ratio between the selected samples that experienced low-temperature stress (below 10 °C, defined as group A) and those that grew under relatively warm conditions (above 10 °C throughout the year, defined as group B). The GPP/SIF ratio for group A generally exhibited a “hump-shaped” seasonal pattern, and that for group B showed a slightly “bowl-shaped” seasonal pattern, which means it is important to consider the effects of temperature on the SIF-GPP relationship. Through linear regression and correlation analysis, we demonstrate that there was a positive correlation between the GPP/SIF ratio and temperature for group A, with a wide temperature range including low-temperature conditions, indicating that, in this case, temperature affected the SIF–GPP relationship; however, for group B—with a temperature higher than 10 °C throughout the year—the GPP/SIF ratio was not consistently affected by temperature. The response of GPP/SIF to low temperature stress was confirmed by tower-based observations at a C3 cropland (C3CRO) site and a boreal evergreen needleleaf forest (BoENF) site. Although the relationship between the GPP/SIF ratio and temperature differed among PFTs, the GPP/SIF ratio decreased under low-temperature conditions for PFTs. Therefore, the GPP/SIF ratio was not constant and was largely influenced by low temperature for different PFTs, thus highlighting the importance of incorporating temperature into SIF-based GPP estimation.

Different Responses of Solar-Induced Chlorophyll Fluorescence at the Red and Far-Red Bands and Gross Primary Productivity to Air Temperature for Winter Wheat

Solar-induced chlorophyll fluorescence (SIF) is closely related to the light-reaction process and has been recognized as a good indicator for tracking gross primary productivity (GPP). Nevertheless, it has not been widely examined how SIF and GPP respond to temperature. Here, we explored the linkage mechanisms between SIF and GPP in winter wheat based on continuous measurements of canopy SIF (cSIF), GPP, and meteorological data. To separately explore the structural and physiological mechanisms underlying the SIF–GPP relationship, we studied the temperature responses of the estimated light use efficiency (LUEp), canopy-level chlorophyll fluorescence yield (cSIFyield) and photosystem-level chlorophyll fluorescence yield (ΦF) estimated using canopy-scale remote sensing measurements. We found that GPP, red canopy SIF (cSIF688) and far-red canopy SIF (cSIF760) all exhibited a decreasing trend during overwintering periods. However, GPP and cSIF688 showed relatively more obvious changes in response to air temperature (Ta) than cSIF760 did. In addition, the LUEp responded sensitively to Ta (the correlation coefficient, r = 0.83, p-value < 0.01). The cSIFyield_688 and ΦF_688 (ΦF at 688 nm) also exhibited significantly positive correlations with Ta (r > 0.7, p-value < 0.05), while cSIFyield_760 and ΦF_760 (ΦF at 760 nm) were weakly correlated with Ta (r < 0.3, p-value > 0.05) during overwintering periods. The results also show that LUEp was more sensitive to Ta than ΦF, which caused changes in the LUEp/ΦF ratio in response to Ta. By considering the influence of Ta, the GPP estimation based on the total SIF emitted at the photosystem level (tSIF) was improved (with R2 increased by more than 0.12 for tSIF760 and more than 0.05 for tSIF688). Therefore, our results indicate that the LUEp/ΦF ratio is affected by temperature conditions and highlights that the SIF–GPP model should consider the influence of temperature.

Monitoring 2019 Drought and Assessing Its Effects on Vegetation Using Solar-Induced Chlorophyll Fluorescence and Vegetation Indexes in the Middle and Lower Reaches of Yangtze River, China

Monitoring drought precisely and evaluating drought effects quantitatively can establish a scientific foundation for understanding drought. Although solar-induced chlorophyll fluorescence (SIF) can detect the drought stress in advance, the performance of SIF in monitoring drought and assessing drought-induced gross primary productivity (GPP) losses from lush to senescence remains to be further studied. Taking the 2019 drought in the middle and lower reaches of the Yangtze River (MLRYR) as an example, this study aims to monitor and assess this drought by employing a new global, OCO-2-based SIF (GOSIF) and vegetation indexes (VIs). Results showed that the GPP, GOSIF, and VIs all exhibited significant increasing trends during 2000–2020. GOSIF was most consistent with GPP in spatial distribution and was most correlated with GPP in both annual (linear correlation, R2 = 0.87) and monthly (polynomial correlation, R2 = 0.976) time scales by comparing with VIs. During July–December 2019, the precipitation (PPT), soil moisture, and standardized precipitation evapotranspiration index (SPEI) were generally below the averages during 2011–2020 and reached their lowest point in November, while those of air temperature (Tem), land surface temperature (LST), and photosynthetically active radiation (PAR) were the contrary. For drought monitoring, the spatial distributions of standardized anomalies of GOSIF and VIs were consistent during August–October 2019. In November and December, however, considering vegetation has entered the senescence stage, SIF had an obvious early response in vegetation physiological state monitoring compared with VIs, while VIs can better indicate meteorological drought conditions than SIF. For drought assessment, the spatial distribution characteristics of GOSIF and its standardized anomaly were both most consistent with that of GPP, especially the standardized anomaly in November and December. All the above phenomena verified the good spatial consistency between SIF and GPP and the superior ability of SIF in capturing and quantifying drought-induced GPP losses. Results of this study will improve the understanding of the prevention and reduction in agrometeorological disasters and can provide an accurate and timely method for drought monitoring.

Improving Spatial Disaggregation of Crop Yield by Incorporating Machine Learning with Multisource Data: A Case Study of Chinese Maize Yield

Spatially explicit crop yield datasets with continuous long-term series are essential for understanding the spatiotemporal variation of crop yield and the impact of climate change on it. There are several spatial disaggregation methods to generate gridded yield maps, but these either use an oversimplified approach with only a couple of ancillary data or an overly complex approach with limited flexibility and scalability. This study developed a spatial disaggregation method using improved spatial weights generated from machine learning. When applied to Chinese maize yield, extreme gradient boosting (XGB) derived the best prediction results, with a cross-validation coefficient of determination (R2) of 0.81 at the municipal level. The disaggregated yield at 1 km grids could explain 54% of the variance of the county-level statistical yield, which is superior to the existing gridded maize yield dataset in China. At the site level, the disaggregated yields also showed much better agreement with observations than the existing gridded maize yield dataset. This lightweight method is promising for generating spatially explicit crop yield datasets with finer resolution and higher accuracy, and for providing necessary information for maize production risk assessment in China under climate change.

Improving the Forecasting of Winter Wheat Yields in Northern China with Machine Learning–Dynamical Hybrid Subseasonal-to-Seasonal Ensemble Prediction

Subseasonal-to-seasonal (S2S) prediction of winter wheat yields is crucial for farmers and decision-makers to reduce yield losses and ensure food security. Recently, numerous researchers have utilized machine learning (ML) methods to predict crop yield, using observational climate variables and satellite data. Meanwhile, some studies also illustrated the potential of state-of-the-art dynamical atmospheric prediction in crop yield forecasting. However, the potential of coupling both methods has not been fully explored. Herein, we aimed to establish a skilled ML–dynamical hybrid model for crop yield forecasting (MHCF v1.0), which hybridizes ML and a global dynamical atmospheric prediction system, and applied it to northern China at the S2S time scale. In this study, we adopted three mainstream machining learning algorithms (XGBoost, RF, and SVR) and the multiple linear regression (MLR) model, and three major datasets, including satellite data from MOD13C1, observational climate data from CRU, and S2S atmospheric prediction data from IAP CAS, used to predict winter wheat yield from 2005 to 2014, at the grid level. We found that, among the four models examined in this work, XGBoost reached the highest skill with the S2S prediction as inputs, scoring R2 of 0.85 and RMSE of 0.78 t/ha 3–4 months, leading the winter wheat harvest. Moreover, the results demonstrated that crop yield forecasting with S2S dynamical predictions generally outperforms that with observational climate data. Our findings highlighted that the coupling of ML and S2S dynamical atmospheric prediction provided a useful tool for yield forecasting, which could guide agricultural practices, policy-making and agricultural insurance.

Assessing the Impact of Extreme Droughts on Dryland Vegetation by Multi-Satellite Solar-Induced Chlorophyll Fluorescence

Satellite-estimated solar-induced chlorophyll fluorescence (SIF) is proven to be an effective indicator for dynamic drought monitoring, while the capability of SIF to assess the variability of dryland vegetation under water and heat stress remains challenging. This study presents an analysis of the responses of dryland vegetation to the worst extreme drought over the past two decades in Australia, using multi-source spaceborne SIF derived from the Global Ozone Monitoring Experiment-2 (GOME-2) and TROPOspheric Monitoring Instrument (TROPOMI). Vegetation functioning was substantially constrained by this extreme event, especially in the interior of Australia, in which there was hardly seasonal growth detected by neither satellite-based observations nor tower-based flux measurements. At a 16-day interval, both SIF and enhanced vegetation index (EVI) can timely capture the reduction at the onset of drought over dryland ecosystems. The results demonstrate that satellite-observed SIF has the potential for characterizing and monitoring the spatiotemporal dynamics of drought over water-limited ecosystems, despite coarse spatial resolution coupled with high-retrieval noise as compared with EVI. Furthermore, our study highlights that SIF retrieved from TROPOMI featuring substantially enhanced spatiotemporal resolution has the promising capability for accurately tracking the drought-induced variation of heterogeneous dryland vegetation.

Assessing the responses of vegetation to meteorological drought and its influencing factors with partial wavelet coherence analysis

The increase in drought frequency in recent years is considered as an important factor affecting vegetation diversity. Understanding the responses of vegetation dynamics to drought is helpful to reveal the behavioral mechanisms of terrestrial ecosystems and propose effective drought control measures. In this study, long time series of Normalized Difference Vegetation Index (NDVI) and Solar-induced chlorophyll fluorescence (SIF) were used to analyze the vegetation dynamics in the Pearl River Basin (PRB). The relationship between vegetation and meteorological drought was evaluated, and the corresponding differences among different vegetation types were revealed. Based on an improved partial wavelet coherence (PWC) analysis, the influences of teleconnection factors (i.e., large-scale climate patterns and solar activity) on the response relationship between meteorological drought and vegetation were quantitatively analyzed to determine the roles of factors. The results indicate that (a) vegetation in the PRB showed an increasing trend from 2001 to 2019, and the SIF increased more than that of NDVI; (b) the vegetation response time (VRT) based on NDVI (VRTN) was typically 4-6 months, while the VRT based on SIF (VRTS) was typically 2-4 months. The VRT was shortest in the woody savannas and longest in the evergreen broadleaf forests. (c) The relationship between the SIF and meteorological drought was more significant than that between the NDVI and meteorological drought. (d) There was a significant positive correlation between meteorological drought and vegetation in the period of 8-20 years. The El Niño Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and sunspots were important driving factors affecting the response relationship between drought and vegetation. Specifically, the PDO had the greatest impacts among these factors.

Integration of Sentinel-3 and MODIS Vegetation Indices with ERA-5 Agro-Meteorological Indicators for Operational Crop Yield Forecasting

Timely crop yield forecasts at a national level are substantial to support food policies, to assess agricultural production, and to subsidize regions affected by food shortage. This study presents an operational crop yield forecasting system for Poland that employs freely available satellite and agro-meteorological products provided by the Copernicus programme. The crop yield predictors consist of: (1) Vegetation condition indicators provided daily by Sentinel-3 OLCI (optical) and SLSTR (thermal) imagery, (2) a backward extension of Sentinel-3 data (before 2018) derived from cross-calibrated MODIS data, and (3) air temperature, total precipitation, surface radiation, and soil moisture derived from ERA-5 climate reanalysis generated by the European Centre for Medium-Range Weather Forecasts. The crop yield forecasting algorithm is based on thermal time (growing degree days derived from ERA-5 data) to better follow the crop development stage. The recursive feature elimination is used to derive an optimal set of predictors for each administrative unit, which are ultimately employed by the Extreme Gradient Boosting regressor to forecast yields using official yield statistics as a reference. According to intensive leave-one-year-out cross validation for the 2000–2019 period, the relative RMSE for voivodships (NUTS-2) are: 8% for winter wheat, and 13% for winter rapeseed and maize. Respectively, for municipalities (LAU) it equals 14% for winter wheat, 19% for winter rapeseed, and 27% for maize. The system is designed to be easily applicable in other regions and to be easily adaptable to cloud computing environments such as Data and Information Access Services (DIAS) or Amazon AWS, where data sets from the Copernicus programme are directly accessible.

Gibberellic acids promote growth and exopolysaccharide production in Tetraselmis suecica under reciprocal nitrogen concentration: an assessment on antioxidant properties and nutrient removal efficacy of immobilized iron-magnetic nanoparticles

The present study was aimed to assess the effect of gibberellic acids to enhance the growth, biomass, pigment, and exopolysaccharides production in Tetraselmis suecica under reciprocal nitrogen concentrations. For this study, the seven types of experimental media (N-P, NL-P/2GA3, N0-P/2GA3, NL-P/4GA3, N0-P/4GA3, NL-P/6GA3, and N0-P/6GA3) were prepared with the addition of gibberellic acids under various nitrogen concentrations. The experiment lasted for 15 days and the cell density, biomass, chlorophyll 'a', and exopolysaccharides (EPS) concentration of T. suecica were estimated for every 3 days. Then the EPS was subjected to the analyses of chemical (carbohydrate, protein, sulfate, and uronic acid), and antioxidant activity. In addition, nutrient removal efficiency was evaluated using different concentration of EPS. The highest DPPH (2,2-diphenyl-1-picrylhydrazyl) (86.7 ± 0.95%) and hydroxyl radical activity (85.7 ± 2.48%) were observed at the EPS concentrations 2.5 and 1.2 mg/mL, respectively. The immobilized magnetic Fe3O4-EPS (ferric oxide-exopolysaccharides) nanoparticles (5.0 and 10.0 g/L) have efficiently removed the excessive phosphate (89.5 ± 1.65%) and nitrate (73.5 ± 1.72%) from the Litopenaeus vannamei cultured wastewater. Thus, the application of gibberellic acids combined with limited nitrogen concentration could produce higher EPS that could exhibit excellent antioxidant activity, and nutrient removal efficacy in the form of Fe3O4-EPS magnetic nanoparticles.

Is satellite Sun-Induced Chlorophyll Fluorescence more indicative than vegetation indices under drought condition?

Droughts represent one of the most severe abiotic stress factors that could result in great crop yield loss. Numerous vegetation indices have been proposed for monitoring the vegetation condition under stress and assessing drought impacts on yield loss. However, the understanding and comparison between traditional vegetation indices (VIs) and the newly emerging satellite Sun-Induced Chlorophyll Fluorescence (SIF) for monitoring vegetation condition is still limited especially under drought stress and at multiple spatial scales. In this study, the potential of satellite observation SIF for monitoring corn response to drought was investigated based on the 2012 drought in the US Corn Belt. The standardized precipitation evapotranspiration index (SPEI) was used here to quantify drought. We found that all SPEI were above -1, except for July (-1.27), August (-1.39) and September (-1.14) in 2012, indicating the severity of this drought. We examined the relationship between satellite measurements of SIF, SIF_yield, VIs (e.g., NDVI and EVI) and SPEI. Results indicated that SIF_yield was sensitive to drought and SIF captured the stress more accurately both at the regional and state scales for the US Corn Belt. Quantitatively, SIF_yield had a high correlation with SPEI (r = 0.987, p < 0.05) over the entire Corn Belt, and it indicated losses in response to drought approximately one month earlier than SIF/NDVI/EVI. Furthermore, our results demonstrated that SIF could be trusted as an effective indicator to study the relationship between GPP (R² ≥ 0.8664, p < 0.01) under drought conditions across the Corn Belt. This study highlighted the advantage of using satellite SIF observations to monitor the drought stress on crop growth especially GPP at regional scale.

Automatic Identification and Monitoring of Plant Diseases Using Unmanned Aerial Vehicles: A Review

Disease diagnosis is one of the major tasks for increasing food production in agriculture. Although precision agriculture (PA) takes less time and provides a more precise application of agricultural activities, the detection of disease using an Unmanned Aerial System (UAS) is a challenging task. Several Unmanned Aerial Vehicles (UAVs) and sensors have been used for this purpose. The UAVs’ platforms and their peripherals have their own limitations in accurately diagnosing plant diseases. Several types of image processing software are available for vignetting and orthorectification. The training and validation of datasets are important characteristics of data analysis. Currently, different algorithms and architectures of machine learning models are used to classify and detect plant diseases. These models help in image segmentation and feature extractions to interpret results. Researchers also use the values of vegetative indices, such as Normalized Difference Vegetative Index (NDVI), Crop Water Stress Index (CWSI), etc., acquired from different multispectral and hyperspectral sensors to fit into the statistical models to deliver results. There are still various drifts in the automatic detection of plant diseases as imaging sensors are limited by their own spectral bandwidth, resolution, background noise of the image, etc. The future of crop health monitoring using UAVs should include a gimble consisting of multiple sensors, large datasets for training and validation, the development of site-specific irradiance systems, and so on. This review briefly highlights the advantages of automatic detection of plant diseases to the growers.

Quantifying high-temperature stress on soybean canopy photosynthesis: The unique role of sun-induced chlorophyll fluorescence

High temperature and accompanying high vapor pressure deficit often stress plants without causing distinctive changes in plant canopy structure and consequential spectral signatures. Sun-induced chlorophyll fluorescence (SIF), because of its mechanistic link with photosynthesis, may better detect such stress than remote sensing techniques relying on spectral reflectance signatures of canopy structural changes. However, our understanding about physiological mechanisms of SIF and its unique potential for physiological stress detection remains less clear. In this study, we measured SIF at a high-temperature experiment, Temperature Free-Air Controlled Enhancement, to explore the potential of SIF for physiological investigations. The experiment provided a gradient of soybean canopy temperature with 1.5, 3.0, 4.5, and 6.0°C above the ambient canopy temperature in the open field environments. SIF yield, which is normalized by incident radiation and the fraction of absorbed photosynthetically active radiation, showed a high correlation with photosynthetic light use efficiency (r = 0.89) and captured dynamic plant responses to high-temperature conditions. SIF yield was affected by canopy structural and plant physiological changes associated with high-temperature stress (partial correlation r = 0.60 and -0.23). Near-infrared reflectance of vegetation, only affected by canopy structural changes, was used to minimize the canopy structural impact on SIF yield and to retrieve physiological SIF yield (ΦF ) signals. ΦF further excludes the canopy structural impact than SIF yield and indicates plant physiological variability, and we found that ΦF outperformed SIF yield in responding to physiological stress (r = -0.37). Our findings highlight that ΦF sensitively responded to the physiological downregulation of soybean gross primary productivity under high temperature. ΦF , if reliably derived from satellite SIF, can support monitoring regional crop growth and different ecosystems' vegetation productivity under environmental stress and climate change.

Enhanced drought detection and monitoring using sun-induced chlorophyll fluorescence over Hulun Buir Grassland, China

Drought is one of the most damaging events in the grassland ecosystem. The detection and monitoring of drought are very important to maintain the balance of the grassland ecosystem. The potential of Sun-induced Chlorophyll Fluorescence (SIF) for drought detection and monitoring were explored in this study. Based on significant negative anomalies of self-calibrating Palmer drought severity index (scPDSI), precipitation (PPT), soil moisture (SM)，surface water storage (SWS), and a significant positive anomaly of land surface temperature (LST), a severe drought event was accurately detected from June to August in 2016 over Hulun Buir Grassland. The far-red SIF was decomposed into its mechanical parts such as SIF, absorbed photosynthetically active radiation (APAR), normalized by APAR (SIF_yield), physiological SIF emission yield (SIF_pey), and total emitted SIF (SIF_te), which were more sensitive to drought than the vegetation indices (VIs), including normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), modified soil adjusted vegetation index (MSAVI2), and near-infrared reflectance of vegetation (NIR_V). SIF and NIR_V represented the SIF indicators and the VIs, respectively, which were most affected by drought, with a decrease of -2.67% and 4.19% in June, 50.93% and 31.76% in July, and 55.58% and 39.44% in August. The correlations between anomalies of SIF indicators, VIs, and anomalies of LST, wind speed (WS) were a strong negative correlation, indicating that their reduction was caused by the anomalies of LST and WS. Moreover, the SIF indicators had a shorter lag time in response to meteorological drought than VIs. Besides, the correlations between SIF-based drought indices such as drought fluorescence monitoring index (DFMI), SIF health index (SHI), and SM were - 0.709 and - 0.783 (P < 0.01), respectively, higher than the conventional drought indices. Moreover, DFMI and SHI could reflect the changes of SM in advance, while the conventional drought indices mostly lagged behind the changes of SM. This study shows that SIF can enhance drought detection, and the SIF-based drought index can be well suitable for drought monitoring.

Genome-wide identification, classification and expression profile analysis of the HSF gene family in Hypericum perforatum

Heat shock transcription factors (HSFs) are critical regulators of plant responses to various abiotic and biotic stresses, including high temperature stress. HSFs are involved in regulating the expression of heat shock proteins (HSPs) by binding with heat stress elements (HSEs) to defend against high-temperature stress. The H. perforatum genome was recently fully sequenced; this provides a valuable resource for genetic and functional analysis. In this study, 23 putative HpHSF genes were identified and divided into three groups (A, B, and C) based on phylogeny and structural features. Gene structure and conserved motif analyses were performed on HpHSFs members; the DNA-binding domain (DBD), hydrophobic heptad repeat (HR-A/B), and exon-intron boundaries exhibited specific phylogenetic relationships. In addition, the presence of various cis-acting elements in the promoter regions of HpHSFs underscored their regulatory function in abiotic stress responses. RT-qPCR analyses showed that most HpHSF genes were expressed in response to heat conditions, suggesting that HpHSFs play potential roles in the heat stress resistance pathway. Our findings are advantageous for the analysis and research of the function of HpHSFs in high temperature stress tolerance in H. perforatum.

Differential responses to two heatwave intensities in a Mediterranean citrus orchard are identified by combining measurements of fluorescence and carbonyl sulfide (COS) and CO2 uptake

The impact of extreme climate episodes such as heatwaves on plants physiological functioning and survival may depend on the event intensity, which requires quantification. We unraveled the distinct impacts of intense (HW) and intermediate (INT) heatwave days on carbon uptake, and the underlying changes in the photosynthetic system, in a Mediterranean citrus orchard using leaf active (pulse amplitude modulation; PAM) and canopy level passive (sun-induced; SIF) fluorescence measurements, together with CO₂ , water vapor, and carbonyl sulfide (COS) exchange measurements. Compared to normal (N) days, gross CO₂ uptake fluxes (gross primary production, GPP) were significantly reduced during HW days, but only slightly decreased during INT days. By contrast, COS uptake flux and SIF_A (at 760 nm) decreased during both HW and INT days, which was reflected in leaf internal CO₂ concentrations and in nonphotochemical quenching, respectively. Intense (HW) heatwave conditions also resulted in a substantial decrease in electron transport rates, measured using leaf-scale fluorescence, and an increase in the fractional energy consumption in photorespiration. Using the combined proxy approach, we demonstrate a differential ecosystem response to different heatwave intensities, which allows the trees to preserve carbon assimilation during INT days but not during HW days.

Dissection of Genetic Basis Underpinning Kernel Weight-Related Traits in Common Wheat

Genetic dissection kernel weight-related traits is of great significance for improving wheat yield potential. As one of the three major yield components of wheat, thousand kernel weight (TKW) was mainly affected by grain length (GL) and grain width (GW). To uncover the key loci for these traits, we carried out a quantitative trait loci (QTL) analysis of an F₆ recombinant inbred lines (RILs) population derived from a cross of Henong 5290 (small grain) and 06Dn23 (big grain) with a 50 K single nucleotide polymorphism (SNP) array. A total of 17 stable and big effect QTL, including 5 for TKW, 8 for GL and 4 for GW, were detected on the chromosomes 1B, 2A, 2B, 2D, 4B, 5A, 6A and 6D, respectively. Among these, there were two co-located loci for three traits that were mapped on the chromosome 4BS and 6AL. The QTL on 6AL was the most stable locus and explained 15.4–24.8%, 4.1–8.8% and 15.7–24.4% of TKW, GW and GL variance, respectively. In addition, two more major QTL of GL were located on chromosome arm 2BL and 2DL, accounting for 9.7–17.8% and 13.6–19.8% of phenotypic variance, respectively. In this study, we found one novel co-located QTL associated with GL and TKW in 2DL, QGl.haaf-2DL.2/QTkw.haaf-2DL.2, which could explain 13.6–19.8% and 9.8–10.7% phenotypic variance, respectively. Genetic regions and linked markers of these stable QTL will help to further refine mapping of the corresponding loci and marker-assisted selection (MAS) breeding for wheat grain yield potential improvement.

Emerging approaches to measure photosynthesis from the leaf to the ecosystem

Measuring photosynthesis is critical for quantifying and modeling leaf to regional scale productivity of managed and natural ecosystems. This review explores existing and novel advances in photosynthesis measurements that are certain to provide innovative directions in plant science research. First, we address gas exchange approaches from leaf to ecosystem scales. Leaf level gas exchange is a mature method but recent improvements to the user interface and environmental controls of commercial systems have resulted in faster and higher quality data collection. Canopy chamber and micrometeorological methods have also become more standardized tools and have an advanced understanding of ecosystem functioning under a changing environment and through long time series data coupled with community data sharing. Second, we review proximal and remote sensing approaches to measure photosynthesis, including hyperspectral reflectance- and fluorescence-based techniques. These techniques have long been used with aircraft and orbiting satellites, but lower-cost sensors and improved statistical analyses are allowing these techniques to become applicable at smaller scales to quantify changes in the underlying biochemistry of photosynthesis. Within the past decade measurements of chlorophyll fluorescence from earth-orbiting satellites have measured Solar Induced Fluorescence (SIF) enabling estimates of global ecosystem productivity. Finally, we highlight that stronger interactions of scientists across disciplines will benefit our capacity to accurately estimate productivity at regional and global scales. Applying the multiple techniques outlined in this review at scales from the leaf to the globe are likely to advance understanding of plant functioning from the organelle to the ecosystem.

Adopting “Difference-in-Differences” Method to Monitor Crop Response to Agrometeorological Hazards with Satellite Data: A Case Study of Dry-Hot Wind

Rapid changing climate has increased the risk of natural hazards and threatened global and regional food security. Near real-time monitoring of crop response to agrometeorological hazards is fundamental to ensuring national and global food security. However, quantifying crop responses to a specific hazard in the natural environment is still quite challenging, especially over large areas, due to the lack of tools to separate the independent impact of the hazard on crops from other confounding factors. In this study, we present a general difference-in-differences (DID) framework to monitor crop response to agrometeorological hazards at near real-time using widely accessible remotely sensed vegetation indices (VIs). To demonstrate the effectiveness of the DID framework, we applied it in quantifying the dry-hot wind impact on winter wheat in northern China as a case study using the VIs calculated from the MODIS data. The monitoring results for three years with varying severity levels of dry-hot events (i.e., 2007, 2013, and 2014) demonstrated that the framework can effectively detect winter wheat growing areas affected by dry-hot wind hazards. The estimated damage shows a notable relationship (R2 = 0.903, p < 0.001) with the dry-hot wind intensity calculated from meteorological data, suggesting the effectiveness of the method when field data on a large scale is not available for direct validation. The main advantage of this method is that it can effectively isolate the impact of a specific hazard (i.e., dry-hot wind in the case study) from the mixed signals caused by other confounding factors. This general DID framework is very flexible and can be easily extended to other natural hazards and crop types with proper adjustment. Not only can this framework improve the crop yield forecast but also it can provide near real-time assessment for farmers to adapt their farming practice to mitigate impacts of agricultural hazards.

Remote Sensing in Agriculture—Accomplishments, Limitations, and Opportunities

Remote sensing (RS) technologies provide a diagnostic tool that can serve as an early warning system, allowing the agricultural community to intervene early on to counter potential problems before they spread widely and negatively impact crop productivity. With the recent advancements in sensor technologies, data management and data analytics, currently, several RS options are available to the agricultural community. However, the agricultural sector is yet to implement RS technologies fully due to knowledge gaps on their sufficiency, appropriateness and techno-economic feasibilities. This study reviewed the literature between 2000 to 2019 that focused on the application of RS technologies in production agriculture, ranging from field preparation, planting, and in-season applications to harvesting, with the objective of contributing to the scientific understanding on the potential for RS technologies to support decision-making within different production stages. We found an increasing trend in the use of RS technologies in agricultural production over the past 20 years, with a sharp increase in applications of unmanned aerial systems (UASs) after 2015. The largest number of scientific papers related to UASs originated from Europe (34%), followed by the United States (20%) and China (11%). Most of the prior RS studies have focused on soil moisture and in-season crop health monitoring, and less in areas such as soil compaction, subsurface drainage, and crop grain quality monitoring. In summary, the literature highlighted that RS technologies can be used to support site-specific management decisions at various stages of crop production, helping to optimize crop production while addressing environmental quality, profitability, and sustainability.

Satellite Solar-Induced Chlorophyll Fluorescence Reveals Heat Stress Impacts on Wheat Yield in India

With continued global warming, the frequency and severity of heat wave events increased over the past decades, threatening both regional and global food security in the future. There are growing interests to study the impacts of drought on crop. However, studies on the impacts of heat stress on crop photosynthesis and yield are still lacking. To fill this knowledge gap, we used both statistical models and satellite solar-induced chlorophyll fluorescence (SIF) data to assess the impacts of heat stress on wheat yield in a major wheat growing region, the Indo-Gangetic Plains (IGP), India. The statistical model showed that the relationships between different accumulated degree days (ADD) and reported wheat yield were significantly negative. The results confirmed that heat stress affected wheat yield across this region. Building on such information, satellite SIF observations were used to further explore the physiological basis of heat stress impacts on wheat yield. Our results showed that SIF had strong negative correlations with ADDs and was capable of monitoring heat stress. The SIF results also indicated that heat stress caused yield loss by directly impacting the photosynthetic capacity in wheat. Overall, our findings demonstrated that SIF as an effective proxy for photosynthetic activity would improve our understanding of the impacts of heat stress on wheat yield.

Dynamics of sun-induced chlorophyll fluorescence and reflectance to detect stress-induced variations in canopy photosynthesis

Passive measurement of sun-induced chlorophyll fluorescence (F) represents the most promising tool to quantify changes in photosynthetic functioning on a large scale. However, the complex relationship between this signal and other photosynthesis-related processes restricts its interpretation under stress conditions. To address this issue, we conducted a field campaign by combining daily airborne and ground-based measurements of F (normalized to photosynthetically active radiation), reflectance and surface temperature and related the observed changes to stress-induced variations in photosynthesis. A lawn carpet was sprayed with different doses of the herbicide Dicuran. Canopy-level measurements of gross primary productivity indicated dosage-dependent inhibition of photosynthesis by the herbicide. Dosage-dependent changes in normalized F were also detected. After spraying, we first observed a rapid increase in normalized F and in the Photochemical Reflectance Index, possibly due to the blockage of electron transport by Dicuran and the resultant impairment of xanthophyll-mediated non-photochemical quenching. This initial increase was followed by a gradual decrease in both signals, which coincided with a decline in pigment-related reflectance indices. In parallel, we also detected a canopy temperature increase after the treatment. These results demonstrate the potential of using F coupled with relevant reflectance indices to estimate stress-induced changes in canopy photosynthesis.

Nonlinear Relationship Between the Yield of Solar-Induced Chlorophyll Fluorescence and Photosynthetic Efficiency in Senescent Crops

It has been demonstrated that solar-induced chlorophyll fluorescence (SIF) is linearly related to the primary production of photosynthesis (GPP) in various ecosystems. However, it is unknown whether such linear relationships have been established in senescent crops. SIF and GPP can be expressed as the products of absorbed photosynthetically active radiation (APAR) with the SIF yield and photosystem II (PSII) operating efficiency, respectively. Thus, the relationship between SIF and GPP can be represented by the relationship between the SIF yield and PSII operating efficiency when the APAR has the same value. Therefore, we analyzed the relationship between the SIF yield and the PSII operating efficiency to address the abovementioned question. Here, diurnal measurements of the canopy SIF (760 nm, F760) of soybean and sweet potato were manually measured and used to calculate the SIF yield. The PSII operating efficiency was calculated from measurements of the chlorophyll fluorescence at the leaf level using the FluorImager chlorophyll fluorescence imaging system. Meanwhile, field measurements of the gas exchange and other physiological parameters were also performed using commercial-grade devices. The results showed that the SIF yield was not linearly related to the PSII operating efficiency at the diurnal scale, reflecting the nonlinear relationship between SIF and GPP. This nonlinear relationship mainly resulted from the heterogeneity and diurnal dynamics of the PSII operating efficiency and from the intrinsic diurnal changes in the maximum efficiency of the PSII photochemistry and the proportion of opened PSII centers. Intensifying respiration was another factor that complicated the response of photosynthesis to the variation in environmental conditions and negatively impacted the relationship between the SIF yield and the PSII operating efficiency. The nonlinear relationship between the SIF yield and PSII efficiency might yield errors in the estimation of GPP using the SIF measurements of senescent crops.

Review of Top-of-Canopy Sun-Induced Fluorescence (SIF) Studies from Ground, UAV, Airborne to Spaceborne Observations

Remote sensing (RS) of sun-induced fluorescence (SIF) has emerged as a promising indicator of photosynthetic activity and related stress from the leaf to the ecosystem level. The implementation of modern RS technology on SIF is highly motivated by the direct link of SIF to the core of photosynthetic machinery. In the last few decades, a lot of studies have been conducted on SIF measurement techniques, retrieval algorithms, modeling, application, validation, and radiative transfer processes, incorporating different RS observations (i.e., ground, unmanned aerial vehicle (UAV), airborne, and spaceborne). These studies have made a significant contribution to the enrichment of SIF science over time. However, to realize the potential of SIF and to explore its full spectrum using different RS observations, a complete document of existing SIF studies is needed. Considering this gap, we have performed a detailed review of current SIF studies from the ground, UAV, airborne, and spaceborne observations. In this review, we have discussed the in-depth interpretation of each SIF study using four RS platforms. The limitations and challenges of SIF studies have also been discussed to motivate future research and subsequently overcome them. This detailed review of SIF studies will help, support, and inspire the researchers and application-based users to consider SIF science with confidence.

The Solar-Induced Chlorophyll Fluorescence Imaging Spectrometer (SIFIS) Onboard the First Terrestrial Ecosystem Carbon Inventory Satellite (TECIS-1): Specifications and Prospects

The global monitoring of solar-induced chlorophyll fluorescence (SIF) using satellite-based observations provides a new way of monitoring the status of terrestrial vegetation photosynthesis on a global scale. Several global SIF products that make use of atmospheric satellite data have been successfully developed in recent decades. The Terrestrial Ecosystem Carbon Inventory Satellite (TECIS-1), the first Chinese terrestrial ecosystem carbon inventory satellite, which is due to be launched in 2021, will carry an imaging spectrometer specifically designed for SIF monitoring. Here, we use an extensive set of simulated data derived from the MODerate resolution atmospheric TRANsmission 5 (MODTRAN 5) and Soil Canopy Observation Photosynthesis and Energy (SCOPE) models to evaluate and optimize the specifications of the SIF Imaging Spectrometer (SIFIS) onboard TECIS for accurate SIF retrievals. The wide spectral range of 670-780 nm was recommended to obtain the SIF at both the red and far-red bands. The results illustrate that the combination of a spectral resolution (SR) of 0.1 nm and a signal-to-noise ratio (SNR) of 127 performs better than an SR of 0.3 nm and SNR of 322 or an SR of 0.5 nm and SNR of 472 nm. The resulting SIF retrievals have a root-mean-squared (RMS) diff* value of 0.15 mW m-2 sr-1 nm-1 at the far-red band and 0.43 mW m-2 sr-1 nm-1 at the red band. This compares with 0.20 and 0.26 mW m-2 sr-1 nm-1 at the far-red band and 0.62 and 1.30 mW m-2 sr-1 nm-1 at the red band for the other two configurations described above. Given an SR of 0.3 nm, the increase in the SNR can also improve the SIF retrieval at both bands. If the SNR is improved to 450, the RMS diff* will be 0.17 mW m-2 sr-1 nm-1 at the far-red band and 0.47 mW m-2 sr-1 nm-1 at the red band. Therefore, the SIFIS onboard TECIS-1 will provide another set of observations dedicated to monitoring SIF at the global scale, which will benefit investigations of terrestrial vegetation photosynthesis from space.

Exceptional Drought across Southeastern Australia Caused by Extreme Lack of Precipitation and Its Impacts on NDVI and SIF in 2018

Increased drought frequency in Australia is a pressing concern for scholars. In 2018, a severe drought in eastern Australia was recorded by the Emergency Events Database (EM-DAT). To investigate the main causes and impacts of this drought across southeastern Australia, this work presents an overview of the drought mechanism and depicts its evolutionary process. The Standardized Precipitation Evapotranspiration Index (SPEI) from the Global Drought Monitor was used to identify the drought event and characterize its spatiotemporal distribution. The Normalized Difference Vegetation Index (NDVI) and the sun-induced chlorophyll fluorescence (SIF) were used to investigate the drought impacts on vegetation growth. In addition, the effects of drought response measures on Sustainable Development Goals (SDGs) were analyzed. Our results showed that the exceptional drought occurred across southeastern Australia from April to December, and it was most severe in July, owing to an extreme lack of precipitation and increase in temperature. Moreover, we identified profound and long-lasting impacts of the drought on NDVI and SIF levels, especially for cropland. Furthermore, we also found that SIF was superior to NDVI in detecting drought impacts. This study advised on how to formulate timely and effective drought-response measures and supports sustainable socioeconomic development in Australia.

Combining Optical, Fluorescence, Thermal Satellite, and Environmental Data to Predict County-Level Maize Yield in China Using Machine Learning Approaches

Maize is an extremely important grain crop, and the demand has increased sharply throughout the world. China contributes nearly one-fifth of the total production alone with its decreasing arable land. Timely and accurate prediction of maize yield in China is critical for ensuring global food security. Previous studies primarily used either visible or near-infrared (NIR) based vegetation indices (VIs), or climate data, or both to predict crop yield. However, other satellite data from different spectral bands have been underutilized, which contain unique information on crop growth and yield. In addition, although a joint application of multi-source data significantly improves crop yield prediction, the combinations of input variables that could achieve the best results have not been well investigated. Here we integrated optical, fluorescence, thermal satellite, and environmental data to predict county-level maize yield across four agro-ecological zones (AEZs) in China using a regression-based method (LASSO), two machine learning (ML) methods (RF and XGBoost), and deep learning (DL) network (LSTM). The results showed that combining multi-source data explained more than 75% of yield variation. Satellite data at the silking stage contributed more information than other variables, and solar-induced chlorophyll fluorescence (SIF) had an almost equivalent performance with the enhanced vegetation index (EVI) largely due to the low signal to noise ratio and coarse spatial resolution. The extremely high temperature and vapor pressure deficit during the reproductive period were the most important climate variables affecting maize production in China. Soil properties and management factors contained extra information on crop growth conditions that cannot be fully captured by satellite and climate data. We found that ML and DL approaches definitely outperformed regression-based methods, and ML had more computational efficiency and easier generalizations relative to DL. Our study is an important effort to combine multi-source remote sensed and environmental data for large-scale yield prediction. The proposed methodology provides a paradigm for other crop yield predictions and in other regions.

Assessing the Feasibility of Using Sentinel-2 Imagery to Quantify the Impact of Heatwaves on Irrigated Vineyards

Heatwaves are common in many viticultural regions of Australia. We evaluated the potential of satellite-based remote sensing to detect the effects of high temperatures on grapevines in a South Australian vineyard over the 2016–2017 and 2017–2018 seasons. The study involved: (i) comparing the normalized difference vegetation index (NDVI) from medium- and high-resolution satellite images; (ii) determining correlations between environmental conditions and vegetation indices (Vis); and (iii) identifying VIs that best indicate heatwave effects. Pearson’s correlation and Bland–Altman testing showed a significant agreement between the NDVI of high- and medium-resolution imagery (R = 0.74, estimated difference −0.093). The band and the VI most sensitive to changes in environmental conditions were 705 nm and enhanced vegetation index (EVI), both of which correlated with relative humidity (R = 0.65 and R = 0.62, respectively). Conversely, SWIR (short wave infrared, 1610 nm) exhibited a negative correlation with growing degree days (R = −0.64). The analysis of heat stress showed that green and red edge bands—the chlorophyll absorption ratio index (CARI) and transformed chlorophyll absorption ratio index (TCARI)—were negatively correlated with thermal environmental parameters such as air and soil temperature and growing degree days (GDDs). The red and red edge bands—the soil-adjusted vegetation index (SAVI) and CARI2—were correlated with relative humidity. To the best of our knowledge, this is the first study demonstrating the effectiveness of using medium-resolution imagery for the detection of heat stress on grapevines in irrigated vineyards.

Impacts of drought and heatwave on the terrestrial ecosystem in China as revealed by satellite solar-induced chlorophyll fluorescence

Droughts and heatwaves have been and will continue to bring large risks to terrestrial ecosystems. However, the understanding of how plants respond to drought and heatwave over broad spatial scales is still limited. In this paper, we use the 2009/2010 drought in Yunnan and the 2013 heatwave over southern China as case studies to investigate the potential of using satellite-observed solar-induced chlorophyll fluorescence (SIF) to monitor vegetation responses to drought and heatwave over broad spatial scales. The 2009/2010 drought onset follows a strong soil moisture deficit due to the yearlong below-normal precipitation in Yunnan from the autumn of 2009 to the spring of 2010. In the summer of 2013, southern China experienced the strongest heatwave due to the sudden temperature increase and rainfall deficit. The results show that SIF can reasonably capture the spatial and temporal dynamics of drought and heatwave development, as indicated by the large reduction in fluorescence yield (SIF_yield). Moreover, SIF_yield demonstrates a significant reduction and earlier response than traditional vegetation indices (enhanced vegetation index, EVI) during the early stages of drought and heatwave events. For both study areas, the spatial and temporal correlation analysis demonstrates that the SIF_yield anomalies are more sensitive to a high vapor pressure deficit (VPD) than low soil moisture. This study implies that satellite observations of SIF have great potential for accurate and timely monitoring of drought and heatwave developments.

Estimation of Chlorophyll Fluorescence at Different Scales: A Review

Measuring chlorophyll fluorescence is a direct and non-destructive way to monitor vegetation. In this paper, the fluorescence retrieval methods from multiple scales, ranging from near the ground to the use of space-borne sensors, are analyzed and summarized in detail. At the leaf-scale, the chlorophyll fluorescence is measured using active and passive technology. Active remote sensing technology uses a fluorimeter to measure the chlorophyll fluorescence, and passive remote sensing technology mainly depends on the sun-induced chlorophyll fluorescence filling in the Fraunhofer lines or oxygen absorptions bands. Based on these retrieval principles, many retrieval methods have been developed, including the radiance-based methods and the reflectance-based methods near the ground, as well as physically and statistically-based methods that make use of satellite data. The advantages and disadvantages of different approaches for sun-induced chlorophyll fluorescence retrieval are compared and the key issues of the current sun-induced chlorophyll fluorescence retrieval algorithms are discussed. Finally, conclusions and key problems are proposed for the future research.

Widespread Decline in Vegetation Photosynthesis in Southeast Asia Due to the Prolonged Drought During the 2015/2016 El Niño

El Niño events are known to be associated with climate extremes and have substantial impacts on the global carbon cycle. The drought induced by strong El Niño event occurred in the tropics during 2015 and 2016. However, it is still unclear to what extent the drought could affect photosynthetic activities of crop and forest in Southeast Asia. Here, we used the satellite solar-induced chlorophyll fluorescence (SIF), which is a proxy of actual photosynthesis, along with traditional vegetation indices (Enhanced Vegetation Index, EVI) and total water storage to investigate the impacts of El Niño–induced droughts on vegetation productivity of the forest and crop in the Southeast Asia. We found that SIF was more sensitive to the water stress than traditional vegetation indices (EVI) to monitor drought for both evergreen broadleaf forest and croplands in Southeast Asia. The higher solar radiation partly offset the negative effects of droughts on the vegetation productivity, leading to a larger decrease of SIF yield (SIFyield) than SIF. Therefore, SIFyield had a larger reduction and was more sensitive to precipitation deficit than SIF during the drought. The comparisons of retrieved column-average dry-air mole fraction of atmospheric carbon dioxide with SIF demonstrated the reduction of CO2 uptake by vegetation in Southeast Asia during the drought. This study highlights that SIF is more beneficial than EVI to be an indicator to characterize and monitor the dynamics of drought in tropical vegetated regions.

A Global, 0.05-Degree Product of Solar-Induced Chlorophyll Fluorescence Derived from OCO-2, MODIS, and Reanalysis Data

Solar-induced chlorophyll fluorescence (SIF) brings major advancements in measuring terrestrial photosynthesis. Several recent studies have evaluated the potential of SIF retrievals from the Orbiting Carbon Observatory-2 (OCO-2) in estimating gross primary productivity (GPP) based on GPP data from eddy covariance (EC) flux towers. However, the spatially and temporally sparse nature of OCO-2 data makes it challenging to use these data for many applications from the ecosystem to the global scale. Here, we developed a new global ‘OCO-2’ SIF data set (GOSIF) with high spatial and temporal resolutions (i.e., 0.05°, 8-day) over the period 2000–2017 based on a data-driven approach. The predictive SIF model was developed based on discrete OCO-2 SIF soundings, remote sensing data from the Moderate Resolution Imaging Spectroradiometer (MODIS), and meteorological reanalysis data. Our model performed well in estimating SIF (R2 = 0.79, root mean squared error (RMSE) = 0.07 W m−2 μm−1 sr−1). The model was then used to estimate SIF for each 0.05° × 0.05° grid cell and each 8-day interval for the study period. The resulting GOSIF product has reasonable seasonal cycles, and captures the similar seasonality as both the coarse-resolution OCO-2 SIF (1°), directly aggregated from the discrete OCO-2 soundings, and tower-based GPP. Our SIF estimates are highly correlated with GPP from 91 EC flux sites (R2 = 0.73, p < 0.001). They capture the expected spatial and temporal patterns and also have remarkable ability to highlight the crop areas with the highest daily productivity across the globe. Our product also allows us to examine the long-term trends in SIF globally. Compared with the coarse-resolution SIF that was directly aggregated from OCO-2 soundings, GOSIF has finer spatial resolution, globally continuous coverage, and a much longer record. Our GOSIF product is valuable for assessing terrestrial photosynthesis and ecosystem function, and benchmarking terrestrial biosphere and Earth system models.

Radiometric Calibration for Multispectral Camera of Different Imaging Conditions Mounted on a UAV Platform

Unmanned aerial vehicle (UAV) equipped with multispectral cameras for remote sensing (RS) has provided new opportunities for ecological and agricultural related applications for modelling, mapping, and monitoring. However, when the multispectral images are used for the quantitative study, they should be radiometrically calibrated, which accounts for atmospheric and solar conditions by converting the digital number into a unit of scene reflectance that can be directly used in quantitative remote sensing (QRS). Indeed, some of the present applications using multispectral images are processed without precise calibration or with coarse calibration. The radiometric calibration of images from the UAV platform is quite difficult to perform, as the imaging condition is different for every single image. Thus, a standard procedure is necessary for a systematical radiometric calibration method to generate multispectral images with unit reflectance. Further, these images can be used to calculate vegetation indices, which are useful in monitoring vegetation phenology. These vegetation indices are considered as a potential screening tool to know the plant status, such as nitrogen, chlorophyll content, green leaf biomass, etc. This study focuses on a series of radiometric calibrations for multispectral images acquired from different flight altitudes, time instants, and weather conditions. Radiometric calibration for multispectral images is performed using the linear regression method (LRM). The main contribution involves (1) affirming the optimal calibration targets and assessing the atmospheric effects of different flights using the single scene of images; (2) to evaluate the effects of mosaic images with the LRM; (3) to propose and validate a universal calibration equation for the Mini Multiple Camera Array (MCA) 6 camera. The obtained results show that the three calibration targets, such as the dark, moderate, and white, are better for the Mini MCA 6 camera. The atmospheric effects increase with the increase of flight altitudes for each band, and the camera effect is of a fixed number. However, the camera effect and atmospheric attenuation to reflectance from different altitudes were relatively low considering the accuracy assessment. The performance measures namely, mean absolute deviation (indicated as V) and root mean square error (RMSE) between single and mosaic images show that the mosaic will not influence too much reflectance. The LRM performs well in all weather conditions. The universal calibration equation is suitable to apply to the images acquired during a sunny day and even with a little cloud.

Monitoring Drought Effects on Vegetation Productivity Using Satellite Solar-Induced Chlorophyll Fluorescence

Around the world, the increasing drought, which is exacerbated by climate change, has significant impacts on vegetation carbon assimilation. Identifying how short-term climate anomalies influence vegetation productivity in a timely and accurate manner at the satellite scale is crucial to monitoring drought. Satellite solar-induced chlorophyll fluorescence (SIF) has recently been reported as a direct proxy of actual vegetation photosynthesis and has more advantages than traditional vegetation indices (e.g., the Normalized Difference Vegetation Index, NDVI and the Enhanced Vegetation Index, EVI) in monitoring vegetation vitality. This study aims to evaluate the feasibility of SIF in interpreting drought effects on vegetation productivity in Victoria, Australia, where heat stress and drought are often reported. Drought-induced variations in SIF and absorbed photosynthetically active radiation (APAR) estimations based on NDVI and EVI were investigated and validated against results indicated by gross primary production (GPP). We first compared drought responses of GPP and vegetation proxies (SIF and APAR) during the 2009 drought event, considering potential biome-dependency. Results showed that SIF exhibited more consistent declines with GPP losses induced by drought than did APAR estimations during the 2009 drought period in space and time, where APAR had obvious lagged responses compared with SIF, especially in evergreen broadleaf forest land. We then estimated the sensitivities of the aforementioned variables to meteorology anomalies using the ARx model, where memory effects were considered, and compared the correlations of GPP anomaly with the anomalies of vegetation proxies during a relatively long period (2007–2013). Compared with APAR, GPP and SIF are more sensitive to temperature anomalies for the general Victoria region. For crop land, GPP and vegetation proxies showed similar sensitivities to temperature and water availability. For evergreen broadleaf forest land, SIF anomaly was explained better by meteorology anomalies than APAR anomalies. GPP anomaly showed a stronger linear relationship with SIF anomaly than with APAR anomalies, especially for evergreen broadleaf forest land. We showed that SIF might be a promising tool for effectively evaluating short-term drought impacts on vegetation productivity, especially in drought-vulnerable areas, such as Victoria.