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Ribeiro Tomé LM, Quintanilha-Peixoto G, Costa-Rezende DH, Salvador-Montoya CA, Cardoso D, S Araújo D, Freitas JM, Bielefeld Nardoto G, Alves-Silva G, Drechsler-Santos ER, Góes-Neto A. Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus. mBio 2024:e0142324. [PMID: 39012152 DOI: 10.1128/mbio.01423-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 06/20/2024] [Indexed: 07/17/2024] Open
Abstract
In terrestrial forested ecosystems, fungi may interact with trees in at least three distinct ways: (i) associated with roots as symbionts; (ii) as pathogens in roots, trunks, leaves, flowers, and fruits; or (iii) decomposing dead tree tissues on soil or even on dead tissues in living trees. Distinguishing the latter two nutrition modes is rather difficult in Hymenochaetaceae (Basidiomycota) species. Herein, we have used an integrative approach of comparative genomics, stable isotopes, host tree association, and bioclimatic data to investigate the lifestyle ecology of the scarcely known neotropical genus Phellinotus, focusing on the unique species Phellinotus piptadeniae. This species is strongly associated with living Piptadenia gonoacantha (Fabaceae) trees in the Atlantic Forest domain on a relatively high precipitation gradient. Phylogenomics resolved P. piptadeniae in a clade that also includes both plant pathogens and typical wood saprotrophs. Furthermore, both genome-predicted Carbohydrate-Active Enzymes (CAZy) and stable isotopes (δ13C and δ15N) revealed a rather flexible lifestyle for the species. Altogether, our findings suggest that P. piptadeniae has been undergoing a pathotrophic specialization in a particular tree species while maintaining all the metabolic repertoire of a wood saprothroph. IMPORTANCE This is the first genomic description for Phellinotus piptadeniae. This basidiomycete is found across a broad range of climates and ecosystems in South America, including regions threatened by extensive agriculture. This fungus is also relevant considering its pathotrophic-saprotrophic association with Piptadenia goanocantha, which we began to understand with these new results that locate this species among biotrophic and necrotrophic fungi.
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Affiliation(s)
- Luiz Marcelo Ribeiro Tomé
- Department of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Gabriel Quintanilha-Peixoto
- Department of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Diogo Henrique Costa-Rezende
- Departamento de Ciências Biológicas, Programa de Pós-graduação em Botânica, Universidade Estadual de Feira de Santana, Feira de Santana, Brazil
| | - Carlos A Salvador-Montoya
- MIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil
- Fundación Miguel Lillo, Instituto Criptogámico-Sección Micología, San Miguel de Tucumán, Argentina
- Organización Juvenil "Hongos Perú", Cusco, Santiago, Peru
| | - Domingos Cardoso
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro (JBRJ), Rio de Janeiro, Brazil
- Instituto de Biologia, Universidade Federal da Bahia, Salvador, Brazil
| | - Daniel S Araújo
- Program in Bioinformatics, Loyola University Chicago, Chicago, Illinois, USA
| | | | | | - Genivaldo Alves-Silva
- MIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil
| | - Elisandro Ricardo Drechsler-Santos
- MIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi) - MICOLAB, Universidade Federal de Santa Catarina, Florianópolis, Brazil
| | - Aristóteles Góes-Neto
- Department of Microbiology, Molecular and Computational Biology of Fungi Laboratory, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
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2
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Okada KI, Yokoyama D, Aiba SI, Kitayama K. Exploration capacity versus specific enzymatic activity of ectomycorrhizas in response to primary productivity and soil phosphorus availability in Bornean tropical rainforests. Sci Rep 2024; 14:2842. [PMID: 38310149 PMCID: PMC10838334 DOI: 10.1038/s41598-024-53234-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Accepted: 01/30/2024] [Indexed: 02/05/2024] Open
Abstract
Ectomycorrhizal (ECM) fungi are functionally important in biogeochemical cycles in tropical ecosystems. Extracellular enzymatic activity of ECM on a ground-area basis is the product of two attributes; exploration capacity (ECM surface-area) and specific enzymatic activity. Here, we elucidated which attribute better explained the ECM enzymatic activity in response to different levels of soil phosphorus (P) and Nitrogen (N) availability in five Bornean tropical rainforests. We determined the surface area of ECM root tips as well as the enzymatic activities per ECM surface area for carbon (C), N and P degrading enzymes in each site. We evaluated the relationship of ECM enzyme activities with the resource availabilities of C (Above-ground net primary production; ANPP), N, and P of ECM by a generalized linear mixed model. The ECM enzymatic activities on a ground-area basis were more significantly determined by specific enzymatic activity than by the exploration capacity. Specific enzymatic activities were generally negatively affected by C (ANPP) and soil P availability. ECM fungi enhance the specific enzyme activity rather than the exploration capacity to maintain the capacity of nutrient acquisition. The less dependence of ECM fungi on the exploration capacity in these forests may be related to the limitation of C supply from host trees. We highlighted the adaptive mechanisms of ECM fungi on nutrient acquisition in tropical ecosystems through the response of enzymatic activity to nutrient availability across the elements.
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Affiliation(s)
- Kei-Ichi Okada
- Faculty of Bioindustry, Tokyo University of Agriculture, Abashiri, Japan.
- Graduate School of Environment and Information Sciences, Yokohama National University, Yokohama, Japan.
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
| | - Daiki Yokoyama
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
- Center for Sustainable Resource Science, RIKEN, Yokohama, Japan
| | - Shin-Ichiro Aiba
- Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Japan
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3
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Geng X, Zuo J, Meng Y, Zhuge Y, Zhu P, Wu N, Bai X, Ni G, Hou Y. Changes in nitrogen and phosphorus availability driven by secondary succession in temperate forests shape soil fungal communities and function. Ecol Evol 2023; 13:e10593. [PMID: 37818249 PMCID: PMC10560873 DOI: 10.1002/ece3.10593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 09/01/2023] [Accepted: 09/25/2023] [Indexed: 10/12/2023] Open
Abstract
The soil fungal community plays an important role in forest ecosystems and is crucially influenced by forest secondary succession. However, the driving factors of fungal community and function during temperate forest succession and their potential impact on succession processes remain poorly understood. In this study, we investigated the dynamics of the soil fungal community in three temperate forest secondary successional stages (shrublands, coniferous forests, and deciduous broad-leaved forests) using high-throughput DNA sequencing coupled with functional prediction via the FUNGuild database. We found that fungal community richness, α-diversity, and evenness decreased significantly during the succession process. Soil available phosphorus and nitrate nitrogen decreased significantly after initial succession occurred, and redundancy analysis showed that both were significant predictors of soil fungal community structure. Among functional groups, fungal saprotrophs and pathotrophs represented by plant pathogens were significantly enriched in the early-successional stage, while fungal symbiotrophs represented by ectomycorrhiza were significantly increased in the late-successional stage. The abundance of both saprotroph and pathotroph fungal guilds was positively correlated with soil nitrate nitrogen and available phosphorus content. Ectomycorrhizal fungi were negatively correlated with nitrate nitrogen and available phosphorus content and positively correlated with ammonium nitrogen content. These results indicate that the dynamics of fungal community and function reflected the changes in nitrogen and phosphorus availability caused by the secondary succession in temperate forests. The fungal plant pathogen accumulated in the early-successional stage and ectomycorrhizal fungi accumulated in the late-successional stage may have a potential role in promoting forest succession. These findings contribute to a better understanding of the response of soil fungal communities to secondary forest succession and highlight the importance of fungal communities during the successional process.
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Affiliation(s)
- Xinze Geng
- College of Life SciencesLudong UniversityYantaiChina
| | - Jincheng Zuo
- College of Life SciencesLudong UniversityYantaiChina
| | - Yunhao Meng
- School of Resources and Environmental EngineeringLudong UniversityYantaiChina
| | - Yanhui Zhuge
- School of Resources and Environmental EngineeringLudong UniversityYantaiChina
| | - Ping Zhu
- School of Resources and Environmental EngineeringLudong UniversityYantaiChina
| | - Nan Wu
- School of Resources and Environmental EngineeringLudong UniversityYantaiChina
| | - Xinfu Bai
- School of Resources and Environmental EngineeringLudong UniversityYantaiChina
| | - Guangyan Ni
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems and Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical GardenChinese Academy of SciencesGuangzhouChina
| | - Yuping Hou
- College of Life SciencesLudong UniversityYantaiChina
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Dong H, Sun H, Chen C, Zhang M, Ma D. Compositional Shifts and Assembly in Rhizosphere-Associated Fungal Microbiota Throughout the Life Cycle of Japonica Rice Under Increased Nitrogen Fertilization. RICE (NEW YORK, N.Y.) 2023; 16:34. [PMID: 37526797 PMCID: PMC10393908 DOI: 10.1186/s12284-023-00651-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 07/25/2023] [Indexed: 08/02/2023]
Abstract
Soil fungal microbiomes facilitate a range of beneficial functions for their host plants, and rhizosphere fungal community composition, richness, and diversity affect plant growth and development, and crop yield. Therefore, exploring the community structure and assembly of the rhizosphere fungal microbiome and its relationship with soil biochemical properties are fundamental to elucidating how rice plants benefit from their fungal symbionts. In this study, soil samples were collected at seedling, tillering, heading, and ripening stages of rice subjected to three levels of nitrogen fertilization. Plant growth demonstrates a substantial influence on fungal community composition and diversity. From the tillering to the ripening stage, the fungal communities were governed by homogenizing dispersal and dispersal limitation. The prevalence of Glomeromycota, the beneficial fungi, was considerably higher during the heading stage compared to the three other growth stages. This increase in abundance was strongly associated with increased levels of soil nutrients and enhanced activity of nitrogen acquisition enzymes. This may be a strategy developed by rice grown in flooded soil to recruit beneficial fungi in the rhizosphere to meet high nitrogen demands. Our study findings contribute to elucidating the influence of plant development and nitrogen fertilization on the structure and composition of the fungal community as well as its relationship with soil key soil nutrient content and nitrogen-related enzyme activities. They also illustrate how a shift in the fungal community mediates and reflects the effects of nitrogen fertilization input in rice agroecosystems. These findings provide new insights into the effects of changes in nitrogen application in rice rhizosphere at different growth stages on fungal communities and soil biochemical characteristics.
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Affiliation(s)
- Hangyu Dong
- Key Laboratory of Northeast Rice Biology and Breeding, Rice Research Institute, Shenyang Agricultural University, Shenyang, China
- Agronomy College, Shenyang Agricultural University, Shenyang, China
| | - Haoyuan Sun
- Key Laboratory of Northeast Rice Biology and Breeding, Rice Research Institute, Shenyang Agricultural University, Shenyang, China
- Agronomy College, Shenyang Agricultural University, Shenyang, China
| | - Conglin Chen
- Key Laboratory of Northeast Rice Biology and Breeding, Rice Research Institute, Shenyang Agricultural University, Shenyang, China
- Agronomy College, Shenyang Agricultural University, Shenyang, China
| | - Mingyu Zhang
- Key Laboratory of Northeast Rice Biology and Breeding, Rice Research Institute, Shenyang Agricultural University, Shenyang, China
- Agronomy College, Shenyang Agricultural University, Shenyang, China
| | - Dianrong Ma
- Agronomy College, Liaodong University, Dandong, China.
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5
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Le Strat Y, Mandin M, Ruiz N, Robiou du Pont T, Ragueneau E, Barnett A, Déléris P, Dumay J. Quantification of Xylanolytic and Cellulolytic Activities of Fungal Strains Isolated from Palmaria palmata to Enhance R-Phycoerythrin Extraction of Palmaria palmata: From Seaweed to Seaweed. Mar Drugs 2023; 21:393. [PMID: 37504924 PMCID: PMC10381405 DOI: 10.3390/md21070393] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/21/2023] [Accepted: 06/29/2023] [Indexed: 07/29/2023] Open
Abstract
R-phycoerythrin (R-PE) can be enzymatically extracted from red seaweeds such as Palmaria palmata. This pigment has numerous applications and is notably known as an antioxidant, antitumoral or anti-inflammatory agent. Enzymes secreted by P. palmata associated fungal strains were assumed to be efficient and adapted for R-PE extraction from this macroalga. The aim of the present study was to quantify both xylanolytic and cellulolytic activities of enzymatic extracts obtained from six Palmaria palmata derived fungal strains. Degradation of P. palmata biomass by fungal enzymatic extracts was also investigated, focused on soluble protein and R-PE extraction. Enzymatic extracts were obtained by solid state fermentation. Macroalgal degradation abilities were evaluated by measuring reducing sugar release using DNS assays. Soluble proteins and R-PE recovery yields were evaluated through bicinchoninic acid and spectrophotometric assays, respectively. Various enzymatic activities were obtained according to fungal isolates up to 978 U/mL for xylanase and 50 U/mL for cellulase. Enzymatic extract allowed high degrading abilities, with four of the six fungal strains assessed exhibiting at least equal results as the commercial enzymes for the reducing sugar release. Similarly, all six strains allowed the same soluble protein extraction yield and four of them led to an improvement of R-PE extraction. R-PE extraction from P. palamata using marine fungal enzymes appeared particularly promising. To the best of our knowledge, this study is the first on the use of enzymes of P. palmata associated fungi in the degradation of its own biomass for biomolecules recovery.
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Affiliation(s)
- Yoran Le Strat
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Margaux Mandin
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Nicolas Ruiz
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Thibaut Robiou du Pont
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Emilie Ragueneau
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Alexandre Barnett
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Paul Déléris
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
| | - Justine Dumay
- Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
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6
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Hagh-Doust N, Mikryukov V, Anslan S, Bahram M, Puusepp R, Dulya O, Tedersoo L. Effects of nitrogen deposition on carbon and nutrient cycling along a natural soil acidity gradient as revealed by metagenomics. THE NEW PHYTOLOGIST 2023; 238:2607-2620. [PMID: 36949609 DOI: 10.1111/nph.18897] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 03/15/2023] [Indexed: 05/19/2023]
Abstract
Nitrogen (N) deposition and soil acidification are environmental challenges affecting ecosystem functioning, health, and biodiversity, but their effects on functional genes are poorly understood. Here, we utilized metabarcoding and metagenomics to investigate the responses of soil functional genes to N deposition along a natural soil pH gradient. Soil N content was uncorrelated with pH, enabling us to investigate their effects separately. Soil acidity strongly and negatively affected the relative abundances of most cluster of orthologous gene categories of the metabolism supercategory. Similarly, soil acidity negatively affected the diversity of functional genes related to carbon and N but not phosphorus cycling. Multivariate analyses showed that soil pH was the most important factor affecting microbial and functional gene composition, while the effects of N deposition were less important. Relative abundance of KEGG functional modules related to different parts of the studied cycles showed variable responses to soil acidity and N deposition. Furthermore, our results suggested that the diversity-function relationship reported for other organisms also applies to soil microbiomes. Since N deposition and soil pH affected microbial taxonomic and functional composition to a different extent, we conclude that N deposition effects might be primarily mediated through soil acidification in forest ecosystems.
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Affiliation(s)
- Niloufar Hagh-Doust
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
- Mycology and Microbiology Center, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
| | - Vladimir Mikryukov
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
- Mycology and Microbiology Center, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
| | - Sten Anslan
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
- Mycology and Microbiology Center, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
- Department of Ecology, Swedish University of Agricultural Sciences, Ulls Väg 16, 75651, Uppsala, Sweden
| | - Rasmus Puusepp
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
| | - Olesya Dulya
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
- Mycology and Microbiology Center, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
| | - Leho Tedersoo
- Mycology and Microbiology Center, University of Tartu, Juhan Liivi 2, 50409, Tartu, Estonia
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Niego AGT, Rapior S, Thongklang N, Raspé O, Hyde KD, Mortimer P. Reviewing the contributions of macrofungi to forest ecosystem processes and services. FUNGAL BIOL REV 2023. [DOI: 10.1016/j.fbr.2022.11.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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8
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Scartazza A, Sbrana C, D'Andrea E, Matteucci G, Rezaie N, Lauteri M. Above- and belowground interplay: Canopy CO 2 uptake, carbon and nitrogen allocation and isotope fractionation along the plant-ectomycorrhiza continuum. PLANT, CELL & ENVIRONMENT 2023; 46:889-900. [PMID: 36541420 DOI: 10.1111/pce.14519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 12/02/2022] [Accepted: 12/17/2022] [Indexed: 06/17/2023]
Abstract
In forests, mycorrhizal fungi regulate carbon (C) and nitrogen (N) dynamics. We evaluated the interplay among ectomycorrhizas (ECM), ecosystem C fluxes, tree productivity, C and N exchange and isotopic fractionation along the soil-ECM-plant continuum in a Mediterranean beech forest. From bud break to leaf shedding, we monitored: net ecosystem exchange (NEE, a measure of the net exchange of C between an ecosystem and the atmosphere), leaf area index, stem growth, N concentration, δ13 C and δ15 N in rhizosphere soil, ectomycorrhizal fine root tips (ERT), ECM-free fine root portions (NCR) and leaves. Seasonal changes in ERT relative biomass were strictly related to NEE and mimicked those detected in the radial growth. The analysis of δ13 C in ERT, leaves and NCR highlighted the impact of canopy photosynthesis on ERT development and an asynchronous seasonal C allocation strategy between ERT and NCR at the root tips level. Concerning N, δ15 N of leaves was negatively related to that of ERT and dependent on seasonal 15 N differences between ERT and NCR. Our results unravel a synchronous C allocation towards ERT and tree stem driven by the increasing NEE in spring-early summer. Moreover, they highlighted a phenology-dependent 15 N fractionation during N transfer from ECM to their hosts. This evidence, obtained in mature beech trees under natural conditions, may improve the knowledge of Mediterranean forests functionality.
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Affiliation(s)
- Andrea Scartazza
- Research Institute on Terrestrial Ecosystems, National Research Council of Italy (CNR-IRET), Pisa, Italy
- National Biodiversity Future Center (NBFC), Palermo, Italy
| | - Cristiana Sbrana
- Institute of Agricultural Biology and Biotechnology, National Research Council of Italy (CNR-IBBA), Pisa, Italy
| | - Ettore D'Andrea
- National Biodiversity Future Center (NBFC), Palermo, Italy
- Research Institute on Terrestrial Ecosystems, National Research Council of Italy (CNR-IRET), Porano, Italy
| | - Giorgio Matteucci
- National Biodiversity Future Center (NBFC), Palermo, Italy
- Institute for BioEconomy, National Research Council of Italy (CNR-IBE), Sesto Fiorentino, Italy
| | - Negar Rezaie
- Research Institute on Terrestrial Ecosystems, National Research Council of Italy (CNR-IRET), Napoli, Italy
| | - Marco Lauteri
- Research Institute on Terrestrial Ecosystems, National Research Council of Italy (CNR-IRET), Porano, Italy
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9
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Jörgensen K, Clemmensen KE, Wallander H, Lindahl BD. Do ectomycorrhizal exploration types reflect mycelial foraging strategies? THE NEW PHYTOLOGIST 2023; 237:576-584. [PMID: 36271619 PMCID: PMC10098516 DOI: 10.1111/nph.18566] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 10/01/2022] [Indexed: 05/19/2023]
Abstract
Ectomycorrhizal exploration types are commonly assumed to denote spatial foraging patterns and resource-related niches of extraradical mycelia. However, empirical evidence of the consistency of foraging strategies within exploration types is lacking. Here, we analysed ectomycorrhizal foraging patterns by incubating root-excluding ingrowth mesh bags filled with six different substrates in mature Picea abies forests. High-throughput sequencing was used to characterise ectomycorrhizal fungal communities in the mesh bags and on adjacent fine roots after one growing season. Contrary to expectations, many ectomycorrhizal genera of exploration types that are thought to produce little extraradical mycelium colonised ingrowth bags extensively, whereas genera commonly associated with ample mycelial production occurred sparsely in ingrowth bags relative to their abundance on roots. Previous assumptions about soil foraging patterns of exploration types do not seem to hold. Instead, we propose that variation in the proliferation of extraradical mycelium is related to intergeneric differences in mycelial longevity and the mobility of targeted resources.
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Affiliation(s)
- Karolina Jörgensen
- Department of Soil and EnvironmentSwedish University of Agricultural SciencesBox 7014SE‐750 07UppsalaSweden
- Department of Biological SciencesUniversity of BergenBox 7803NO‐5020BergenNorway
| | - Karina E. Clemmensen
- Department of Forest Mycology and Plant PathologySwedish University of Agricultural SciencesBox 7026SE‐750 07UppsalaSweden
| | - Håkan Wallander
- Department of BiologyLund UniversitySölvegatan 37223 26LundSweden
| | - Björn D. Lindahl
- Department of Soil and EnvironmentSwedish University of Agricultural SciencesBox 7014SE‐750 07UppsalaSweden
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10
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Baeza-Guzmán Y, Medel-Ortiz R, Trejo Aguilar D, Garibay-Orijel R. Medium-distance soil foragers dominate the Pinus hartwegii ectomycorrhizal community at the 3900 m Neotropical treeline. Symbiosis 2022. [DOI: 10.1007/s13199-022-00869-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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New data in Porotheleaceae and Cyphellaceae: epitypification of Prunulus scabripes Murrill, the status of Mycopan Redhead, Moncalvo & Vilgalys and a new combination in Pleurella Horak emend. Mycol Prog 2022. [DOI: 10.1007/s11557-022-01795-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
AbstractMycopan is a genus established for Hydropus scabripes by Redhead, Moncalvo & Vilgalys (in Redhead 2013). They considered the genus to be distinct based on morphology and the phylogenetic analysis by Moncalvo et al. (2002) which included a sequence of Hydropus scabripes (AF042635, DAOM 192847) unrelated to the type species of Hydropus (H. fuliginarius). Subsequent sequences of material identified as Hydropus scabripes are not conspecific with the sequence of DAOM 192847. We consider this sequence (obtained from a mycelium culture) to be misidentified. We investigated the true phylogenetic position of authentic Mycopan including genera previously included in Cyphellaceae and Porotheleaceae. Sixteen collections of M. scabripes from Europe and North America were studied on morphological and molecular basis (nrITS and nrLSU sequences). No sequences were obtained from the holotype of Mycopan scabripes, and we designate an epitype to fix the interpretation of this species and the genus Mycopan. Mycopan is maintained as a good genus nested within Cyphellaceae as sister to the mycenoid genus Atheniella. The misidentified Hydropus scabripes AF042635 (DAOM 192847) represents a different species that is closely related to the holotype (and a new Italian collection) of Hebelomina microspora and the monospecific genus Pleurella described from New Zealand. Consequently, Hebelomina microspora is transferred to the emended genus Pleurella, which is sister to Baeospora within the Cyphellaceae. Additionally, based on these phylogenetic results, an updated taxonomic arrangement of Cyphellaceae and Porotheleaceae is proposed, emphasizing once again the polyphyletic nature of Hydropus and Gerronema.
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12
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Dallstream C, Weemstra M, Soper FM. A framework for fine‐root trait syndromes: syndrome coexistence may support phosphorus partitioning in tropical forests. OIKOS 2022. [DOI: 10.1111/oik.08908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - Monique Weemstra
- Ecology and Evolutionary Biology, Univ. of Michigan Ann Arbor MI USA
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13
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Cao T, Hu YP, Yu JR, Wei TZ, Yuan HS. A phylogenetic overview of the Hydnaceae ( Cantharellales, Basidiomycota) with new taxa from China. Stud Mycol 2022; 99:100121. [PMID: 35035603 PMCID: PMC8717575 DOI: 10.1016/j.simyco.2021.100121] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
The family Hydnaceae (Cantharellales, Basidiomycota) is a group of fungi found worldwide which exhibit stichic nuclear division. The group is highly diverse in morphology, ecology, and phylogeny, and includes some edible species which are popular all over the world. Traditionally, Hydnaceae together with Cantharellaceae, Clavulinaceae and Sistotremataceae are four families in the Cantharellales. The four families were combined and redefined as "Hydnaceae", however, a comprehensive phylogeny based on multiple-marker dataset for the entire Hydnaceae sensu stricto is still lacking and the delimitation is also unclear. We inferred Maximum Likelihood and Bayesian phylogenies for the family Hydnaceae from the data of five DNA regions: the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the mitochondrial small subunit rDNA gene (mtSSU), the second largest subunit of RNA polymerase II (RPB2) and the translation elongation factor 1-alpha gene (TEF1). We also produced three more phylogenetic trees for Cantharellus based on 5.8S, nLSU, mtSSU, RPB2 and TEF1, Craterellus and Hydnum both based on the combined nLSU and ITS. This study has reproduced the status of Hydnaceae in the order Cantharellales, and phylogenetically confirmed seventeen genera in Hydnaceae. Twenty nine new taxa or synonyms are described, revealed, proposed, or reported, including eight new subgenera (Cantharellus subgenus Magnus, Craterellus subgenus Cariosi, subg. Craterellus, subg. Imperforati, subg. Lamelles, subg. Longibasidiosi, subg. Ovoidei, and Hydnum subgenus Brevispina); seventeen new species (Ca. laevihymeninus, Ca. magnus, Ca. subminor, Cr. badiogriseus, Cr. croceialbus, Cr. macrosporus, Cr. squamatus, H. brevispinum, H. flabellatum, H. flavidocanum, H. longibasidium, H. pallidocroceum, H. pallidomarginatum, H. sphaericum, H. tangerinum, H. tenuistipitum and H. ventricosum); two synonyms (Ca. anzutake and Ca. tuberculosporus as Ca. yunnanensis), and two newly recorded species (H. albomagnum and H. minum). The distinguishing characters of the new species and subgenera as well as their allied taxa are discussed in the notes which follow them. The delimitation and diversity in morphology, ecology, and phylogeny of Hydnaceae is discussed. Notes of seventeen genera which are phylogenetically accepted in Hydnaceae by this study and a key to the genera in Hydnaceae are provided.
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Key Words
- Cantharellales
- Cantharellus anzutake W. Ogawa, N. Endo, M. Fukuda and A. Yamada and Ca. tuberculosporus M. Zang as Ca. yunnanensis W.F. Chiu
- Cantharellus laevihymeninus T. Cao & H.S. Yuan, Ca. magnus T. Cao & H.S. Yuan, Ca. subminor T. Cao & H.S. Yuan
- Craterellus badiogriseus T. Cao & H.S. Yuan, Cr. croceialbus T. Cao & H.S. Yuan, Cr. macrosporus T. Cao & H.S. Yuan, Cr. squamatus T. Cao & H.S. Yuan
- Hydnaceae
- Hydnum albomagnum Banker
- Hydnum brevispinum T. Cao & H.S. Yuan, H. flabellatum T. Cao & H.S. Yuan, H. flavidocanum T. Cao & H.S. Yuan, H. longibasidium T. Cao & H.S. Yuan, H. pallidocroceum T. Cao & H.S. Yuan, H. pallidomarginatum T. Cao & H.S. Yuan, H. sphaericum T. Cao & H.S. Yuan, H. tangerinum T. Cao & H.S. Yuan, H. tenuistipitum T. Cao & H.S. Yuan, H. ventricosum T. Cao & H.S. Yuan
- Hydnum minum Yanaga & N. Maek
- In genus Cantharellus: Cantharellus subgenus Magnus T. Cao & H.S. Yuan
- Multiple-marker phylogeny
- Taxonomy
- in genus Craterellus: Craterellus subgenus Cariosi T. Cao & H.S. Yuan, subg. Craterellus, subg. Imperforati T. Cao & H.S. Yuan, subg. Lamelles T. Cao & H.S. Yuan, subg. Longibasidiosi T. Cao & H.S. Yuan, subg. Ovoidei T. Cao & H.S. Yuan
- in genus Hydnum: Hydnum subgenus Brevispina T. Cao & H.S. Yuan
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Affiliation(s)
- Ting Cao
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, PR China.,University of the Chinese Academy of Sciences, Beijing 100049, PR China
| | - Ya-Ping Hu
- Nanjing Institute of Environmental Sciences, MEE/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains, Nanjing 210042, PR China
| | - Jia-Rui Yu
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, PR China.,University of the Chinese Academy of Sciences, Beijing 100049, PR China
| | - Tie-Zheng Wei
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China
| | - Hai-Sheng Yuan
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, PR China.,University of the Chinese Academy of Sciences, Beijing 100049, PR China
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14
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Dong H, Fan S, Sun H, Chen C, Wang A, Jiang L, Ma D. Rhizosphere-Associated Microbiomes of Rice ( Oryza sativa L.) Under the Effect of Increased Nitrogen Fertilization. Front Microbiol 2021; 12:730506. [PMID: 34621256 PMCID: PMC8490883 DOI: 10.3389/fmicb.2021.730506] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 09/01/2021] [Indexed: 11/13/2022] Open
Abstract
Crops assemble and rely on rhizosphere-associated microbiomes for plant nutrition, which is crucial to their productivity. Historically, excessive nitrogen fertilization did not result in continuously increasing yields but rather caused environmental issues. A comprehensive understanding should be developed regarding the ways in which crops shape rhizosphere-associated microbiomes under conditions of increased nitrogen fertilization. In this study, we applied 16S and 18S ribosomal RNA gene profiling to characterize bacterial and fungal communities in bulk and rhizosphere soil of rice subjected to three levels of nitrogen fertilization for 5 years. Soil biochemical properties were characterized, and carbon-, nitrogen-, and phosphorus-related soil enzyme activities were investigated, by assays. Increasing nitrogen fertilization led to a decreasing trend in the variation of microbial community structures and demonstrated a more definite influence on fungal rather than bacterial community compositions and functions. Changes in the level of nitrogen fertilization significantly affected chemical properties such as soil pH, nutrient content, and microbial biomass levels in both rhizosphere and bulk soil. Soil enzyme activity levels varied substantially across nitrogen fertilization intensities and correlated more with the fungal than with the bacterial community. Our results indicated that increased nitrogen input drives alterations in the structures and functions of microbial communities, properties of soil carbon, nitrogen, and phosphorus, as well as enzyme activities. These results provide novel insights into the associations among increased nitrogen input, changes in biochemical properties, and shifts in microbial communities in the rhizosphere of agriculturally intensive ecosystems.
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Affiliation(s)
- Hangyu Dong
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Shuxiu Fan
- College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Haoyuan Sun
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Conglin Chen
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Aixin Wang
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Linlin Jiang
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
| | - Dianrong Ma
- Key Laboratory of Northeast Rice Biology and Breeding, National Rice Regional Technology Innovation Center, Rice Research Institute, Shenyang Agricultural University, Shenyang, China.,College of Agronomy, Shenyang Agricultural University, Shenyang, China
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15
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Ahonen SHK, Ylänne H, Väisänen M, Ruotsalainen AL, Männistö MK, Markkola A, Stark S. Reindeer grazing history determines the responses of subarctic soil fungal communities to warming and fertilization. THE NEW PHYTOLOGIST 2021; 232:788-801. [PMID: 34270800 DOI: 10.1111/nph.17623] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 06/30/2021] [Indexed: 06/13/2023]
Abstract
Composition and functioning of arctic soil fungal communities may alter rapidly due to the ongoing trends of warmer temperatures, shifts in nutrient availability, and shrub encroachment. In addition, the communities may also be intrinsically shaped by heavy grazing, which may locally induce an ecosystem change that couples with increased soil temperature and nutrients and where shrub encroachment is less likely to occur than in lightly grazed conditions. We tested how 4 yr of experimental warming and fertilization affected organic soil fungal communities in sites with decadal history of either heavy or light reindeer grazing using high-throughput sequencing of the internal transcribed spacer 2 ribosomal DNA region. Grazing history largely overrode the impacts of short-term warming and fertilization in determining the composition of fungal communities. The less diverse fungal communities under light grazing showed more pronounced responses to experimental treatments when compared with the communities under heavy grazing. Yet, ordination approaches revealed distinct treatment responses under both grazing intensities. If grazing shifts the fungal communities in Arctic ecosystems to a different and more diverse state, this shift may dictate ecosystem responses to further abiotic changes. This indicates that the intensity of grazing cannot be left out when predicting future changes in fungi-driven processes in the tundra.
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Affiliation(s)
- Saija H K Ahonen
- Ecology and Genetics Research Unit, University of Oulu, PO Box 3000, Oulu, FI-90014, Finland
| | - Henni Ylänne
- Centre for Environmental and Climate Research (CEC), Lund University, Ekologihuset, Sölvegatan 37, Lund, 223 62, Sweden
| | - Maria Väisänen
- Ecology and Genetics Research Unit, University of Oulu, PO Box 3000, Oulu, FI-90014, Finland
- Arctic Center, University of Lapland, PO Box 122, Rovaniemi, FI-96101, Finland
| | - Anna Liisa Ruotsalainen
- Ecology and Genetics Research Unit, University of Oulu, PO Box 3000, Oulu, FI-90014, Finland
| | - Minna K Männistö
- Natural Resources Institute Finland (Luke), Ounasjoentie 6, Rovaniemi, FI-96100, Finland
| | - Annamari Markkola
- Ecology and Genetics Research Unit, University of Oulu, PO Box 3000, Oulu, FI-90014, Finland
| | - Sari Stark
- Arctic Center, University of Lapland, PO Box 122, Rovaniemi, FI-96101, Finland
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16
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Chen L, Jiang C, Wang X, Feng Q, Liu X, Tang Z, Sun OJ. Nutrient trade-offs mediated by ectomycorrhizal strategies in plants: Evidence from an Abies species in subalpine forests. Ecol Evol 2021; 11:5281-5294. [PMID: 34026006 PMCID: PMC8131813 DOI: 10.1002/ece3.7417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 02/09/2021] [Accepted: 02/12/2021] [Indexed: 11/09/2022] Open
Abstract
Ectomycorrhizal (ECM) symbiosis is an evolutionary biological trait of higher plants for effective nutrient uptakes. However, little is known that how the formation and morphological differentiations of ECM roots mediate the nutrients of below- and aboveground plant tissues and the balance among nutrient elements across environmental gradients. Here, we investigated the effects of ECM foraging strategies on root and foliar N and P concentrations and N:P ratio Abies faxoniana under variations of climate and soil conditions.The ECM symbionts preferentially mediated P uptake under both N and P limitations. The uptake efficiency of N and P was primarily associated with the ECM root traits, for example, ECM root tip density, superficial area of ECM root tips, and the ratio of living to dead root tips, and was affected by the ECM proliferations and morphological differentiations. The tissue N and P concentrations were positively associated with the abundance of the contact exploration type and negatively with that of the short-distance exploration type.Our findings indicate that the nutritional status of both below- and aboveground plant tissues can be strongly affected by ECM symbiosis in natural environments. Variations in the ECM strategies in response to varying environmental conditions significantly influence plant nutrient uptakes and trade-offs.
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Affiliation(s)
- Lulu Chen
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Chao Jiang
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Xiangping Wang
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Qiuhong Feng
- Sichuan Wolong Forest Ecosystem Research StationSichuan Academy of ForestryChengduChina
- Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan ProvinceSichuan Academy of ForestryChengduChina
| | - Xingliang Liu
- Sichuan Wolong Forest Ecosystem Research StationSichuan Academy of ForestryChengduChina
- Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan ProvinceSichuan Academy of ForestryChengduChina
| | - Zuoxin Tang
- College of Agricultural and Life SciencesKunming UniversityKunmingChina
| | - Osbert Jianxin Sun
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
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17
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Pellitier PT, Zak DR, Argiroff WA, Upchurch RA. Coupled Shifts in Ectomycorrhizal Communities and Plant Uptake of Organic Nitrogen Along a Soil Gradient: An Isotopic Perspective. Ecosystems 2021. [DOI: 10.1007/s10021-021-00628-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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18
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Tedersoo L, Anslan S, Bahram M, Drenkhan R, Pritsch K, Buegger F, Padari A, Hagh-Doust N, Mikryukov V, Gohar D, Amiri R, Hiiesalu I, Lutter R, Rosenvald R, Rähn E, Adamson K, Drenkhan T, Tullus H, Jürimaa K, Sibul I, Otsing E, Põlme S, Metslaid M, Loit K, Agan A, Puusepp R, Varik I, Kõljalg U, Abarenkov K. Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe. Front Microbiol 2020; 11:1953. [PMID: 33013735 PMCID: PMC7510051 DOI: 10.3389/fmicb.2020.01953] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 07/31/2020] [Indexed: 01/16/2023] Open
Abstract
Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots and long-read third-generation sequencing, we found that soil pH has the strongest effect on the diversity of fungi and its multiple taxonomic and functional groups. The pH effects were typically unimodal, usually both direct and indirect through tree species, soil nutrients or mold abundance. Individual tree species, particularly Pinus sylvestris, Picea abies, and Populus x wettsteinii, and overall ectomycorrhizal plant proportion had relatively stronger effects on the diversity of biotrophic fungi than saprotrophic fungi. We found strong temporal sampling and investigator biases for the abundance of molds, but generally all spatial, temporal and microclimatic effects were weak. Richness of fungi and several functional groups was highest in woodlands and around ruins of buildings but lowest in bogs, with marked group-specific trends. In contrast to our expectations, diversity of soil fungi tended to be higher in forest island habitats potentially due to the edge effect, but fungal richness declined with island distance and in response to forest fragmentation. Virgin forests supported somewhat higher fungal diversity than old non-pristine forests, but there were no differences in richness between natural and anthropogenic habitats such as parks and coppiced gardens. Diversity of most fungal groups suffered from management of seminatural woodlands and parks and thinning of forests, but especially for forests the results depended on fungal group and time since partial harvesting. We conclude that the positive effects of tree diversity on overall fungal richness represent a combined niche effect of soil properties and intimate associations.
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Affiliation(s)
- Leho Tedersoo
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Sten Anslan
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.,Zoological Institute, Technische Universität Braunschweig, Brunswick, Germany
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.,Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Rein Drenkhan
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Karin Pritsch
- Helmholtz Zentrum München - Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Neuherberg, Germany
| | - Franz Buegger
- Helmholtz Zentrum München - Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Neuherberg, Germany
| | - Allar Padari
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Niloufar Hagh-Doust
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Vladimir Mikryukov
- Chair of Forest Management Planning and Wood Processing Technologies, Institute of Plant and Animal Ecology, Ural Branch, Russian Academy of Sciences, Yekaterinburg, Russia
| | - Daniyal Gohar
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Rasekh Amiri
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Indrek Hiiesalu
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Reimo Lutter
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Raul Rosenvald
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Elisabeth Rähn
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Kalev Adamson
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Tiia Drenkhan
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia.,Forest Health and Biodiversity, Natural Resources Institute Finland (Luke), Helsinki, Finland
| | - Hardi Tullus
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Katrin Jürimaa
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Ivar Sibul
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Eveli Otsing
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Sergei Põlme
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Marek Metslaid
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Kaire Loit
- Chair of Plant Health, Estonian University of Life Sciences, Tartu, Estonia
| | - Ahto Agan
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Rasmus Puusepp
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Inge Varik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Urmas Kõljalg
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.,Natural History Museum and Botanical Garden, University of Tartu, Tartu, Estonia
| | - Kessy Abarenkov
- Natural History Museum and Botanical Garden, University of Tartu, Tartu, Estonia
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19
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Bahram M, Netherway T, Hildebrand F, Pritsch K, Drenkhan R, Loit K, Anslan S, Bork P, Tedersoo L. Plant nutrient-acquisition strategies drive topsoil microbiome structure and function. THE NEW PHYTOLOGIST 2020; 227:1189-1199. [PMID: 32279325 DOI: 10.1111/nph.16598] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 03/31/2020] [Indexed: 06/11/2023]
Abstract
Plant nutrient-acquisition strategies drive soil processes and vegetation performance, but their effect on the soil microbiome remains poorly understood. This knowledge is important to predict the shifts in microbial diversity and functions due to increasing changes in vegetation traits under global change. Here we documented the topsoil microbiomes of 145 boreal and temperate terrestrial sites in the Baltic region that broadly differed in vegetation type and nutritional traits, such as mycorrhizal types and symbiotic nitrogen-fixation. We found that sites dominated by arbuscular mycorrhizal (AM) vegetation harbor relatively more AM fungi, bacteria, fungal saprotrophs, and pathogens in the topsoil compared with sites dominated by ectomycorrhizal (EM) plants. These differences in microbiome composition reflect the rapid nutrient cycling and negative plant-soil feedback in AM soils. Lower fungal diversity and bacteria : fungi ratios in EM-dominated habitats are driven by monodominance of woody vegetation as well as soil acidification by EM fungi, which are associated with greater diversity and relative abundance of carbohydrate-active enzymes. Our study suggests that shifts in vegetation related to global change and land use may strongly alter the topsoil microbiome structure and function.
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Affiliation(s)
- Mohammad Bahram
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St, 51005, Tartu, Estonia
- Department of Ecology, Swedish University of Agricultural Sciences, Ulls väg 16, 756 51, Uppsala, Sweden
| | - Tarquin Netherway
- Department of Ecology, Swedish University of Agricultural Sciences, Ulls väg 16, 756 51, Uppsala, Sweden
| | - Falk Hildebrand
- Gut Microbes and Health, Quadram Institute Bioscience, Norwich, NR4 7UQ, UK
- Digital Biology, Earlham Institute, Norwich, NR4 7UZ, UK
| | - Karin Pritsch
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany
| | - Rein Drenkhan
- Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Fr.R. Kreutzwaldi, 5, 51006, Tartu, Estonia
| | - Kaire Loit
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr.R. Kreutzwaldi, 5, 51006, Tartu, Estonia
| | - Sten Anslan
- Zoological Institute, Technische Universität Braunschweig, Mendelssohnstrasse 4, 38106, Braunschweig, Germany
| | - Peer Bork
- Structural and Computational Biology, European Molecular Biology Laboratory, 69117, Heidelberg, Germany
- Molecular Medicine Partnership Unit, European Molecular Biology Laboratory, University of Heidelberg, 69117, Heidelberg, Germany
| | - Leho Tedersoo
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St, 51005, Tartu, Estonia
- Natural History Museum, University of Tartu, 14a Ravila, 50411, Tartu, Estonia
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20
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Ectomycorrhizal Fungi: Participation in Nutrient Turnover and Community Assembly Pattern in Forest Ecosystems. FORESTS 2020. [DOI: 10.3390/f11040453] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Ectomycorrhizal fungi (EcMF) are involved in soil nutrient cycling in forest ecosystems. These fungi can promote the uptake of nutrients (e.g., nitrogen (N) and phosphorus (P)) and water by host plants, as well as facilitate host plant growth and resistance to stresses and diseases, thereby maintaining the aboveground primary productivity of forest ecosystems. Moreover, EcMF can acquire the carbon (C) sources needed for their growth from the host plants. The nutrient regulation mechanisms of EcMF mainly include the decay of soil organic matter via enzymatic degradation, nonenzymatic mechanism (Fenton chemistry), and priming effects, which in turn promote C and N cycling. At the same time, EcMF can secrete organic acids and phosphatases to improve the availability of soil P, or increase mycelium inputs to facilitate plant acquisition of P. The spatiotemporal distribution of EcMF is influenced by a combination of historical factors and contemporary environmental factors. The community of EcMF is associated with various factors, such as climate change, soil conditions, and host distribution. Under global climate change, investigating the relationships between the nutrient cycling functions of EcMF communities and their distribution patterns under various spatiotemporal scales is conducive to more accurate assessments of the ecological effects of EcMF on the sustainable development of forest.
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21
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Species Differences in Nitrogen Acquisition in Humid Subtropical Forest Inferred From 15N Natural Abundance and Its Response to Tracer Addition. FORESTS 2019. [DOI: 10.3390/f10110991] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Differences in nitrogen (N) acquisition patterns between plant species are often reflected in the natural 15N isotope ratios (δ15N) of the plant tissues, however, such differences are poorly understood for co-occurring plants in tropical and subtropical forests. To evaluate species variation in N acquisition traits, we measured leaf N concentration (%N) and δ15N in tree and understory plant species under ambient N deposition (control) and after a decade of N addition at 50 kg N ha−1 yr−1 (N-plots) in an old-growth subtropical forest in southern China. We also measured changes in leaf δ15N after one-year of 15N addition in both the control and N-plots. The results show consistent significant species variation in leaf %N in both control and N-plots, but decadal N addition did not significantly affect leaf %N. Leaf δ15N values were also significantly different among the plant species both in tree and understory layers, and both in control and N-plots, suggesting differences in N acquisition strategies such as variation in N sources and dominant forms of N uptake and dependence on mycorrhizal associations among the co-occurring plant species. Significant differences between the plant species (in both control and N-plots) in changes in leaf δ15N after 15N addition were observed only in the understory plants, indicating difference in access (or use) of deposited N among the plants. Decadal N addition had species-dependent effects on leaf δ15N, suggesting the N acquisition patterns of these plant species are differently affected by N deposition. These results suggest that co-occurring plants in N-rich and subtropical forests vary in their N acquisition traits; these differences need to be accounted for when evaluating the impact of N deposition on N cycling in these ecosystems.
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22
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Abdellatif L, Lokuruge P, Hamel C. Axenic growth of the arbuscular mycorrhizal fungus Rhizophagus irregularis and growth stimulation by coculture with plant growth-promoting rhizobacteria. MYCORRHIZA 2019; 29:591-598. [PMID: 31760478 DOI: 10.1007/s00572-019-00924-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 11/08/2019] [Indexed: 06/10/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi are ecologically important for the growth and survival of most vascular plants. These fungi are known as obligate biotrophs that acquire carbon solely from host plants. A 13C-labeling experiment revealed the ability of axenically grown Rhizophagus irregularis DAOM 197198 to derive carbon from axenic culture on a relatively novel medium containing two sources of palmitic acid developed by Ishii (designated IH medium). In a separate experiment, this model fungus grew larger mycelia and produced more daughter spores on the IH medium in the presence of two Variovorax paradoxus strains than in axenic culture. In contrast, a strain of Mycobacterium sp. did not influence the growth of the AM fungus. Rhizophagus irregularis produced branched absorbing structures on the IH medium and, in monoxenic culture with V. paradoxus, sometimes formed densely packed hyphal coils. In this study, we report for the first time the formation of coarse terminal pelotons and of terminal and intercalary very fine (≈ 1 μm diameter) hyphal elongations, which could form daughter spores in the presence of V. paradoxus. This study shows the value of IH medium and certain rhizobacteria in the culture of R. irregularis DAOM 197198 in vitro.
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Affiliation(s)
- Lobna Abdellatif
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, Swift Current, Saskatchewan, Canada.
| | - Prabhath Lokuruge
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, Swift Current, Saskatchewan, Canada
| | - Chantal Hamel
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, Swift Current, Saskatchewan, Canada
- Quebec Research and Development Centre, Agriculture and Agri-Food Canada, Quebec City, Quebec, Canada
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Eduardo PP, Margarita VR, Roberto GO, Rodolfo SL. Two new species of Clavulina and the first record of Clavulina reae from temperate Abies religiosa forests in central Mexico. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01516-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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24
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Tedersoo L, Bahram M. Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes. Biol Rev Camb Philos Soc 2019; 94:1857-1880. [PMID: 31270944 DOI: 10.1111/brv.12538] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 05/27/2019] [Accepted: 05/30/2019] [Indexed: 12/13/2022]
Abstract
Mycorrhizal fungi benefit plants by improved mineral nutrition and protection against stress, yet information about fundamental differences among mycorrhizal types in fungi and trees and their relative importance in biogeochemical processes is only beginning to accumulate. We critically review and synthesize the ecophysiological differences in ectomycorrhizal, ericoid mycorrhizal and arbuscular mycorrhizal symbioses and the effect of these mycorrhizal types on soil processes from local to global scales. We demonstrate that guilds of mycorrhizal fungi display substantial differences in genome-encoded capacity for mineral nutrition, particularly acquisition of nitrogen and phosphorus from organic material. Mycorrhizal associations alter the trade-off between allocation to roots or mycelium, ecophysiological traits such as root exudation, weathering, enzyme production, plant protection, and community assembly as well as response to climate change. Mycorrhizal types exhibit differential effects on ecosystem carbon and nutrient cycling that affect global elemental fluxes and may mediate biome shifts in response to global change. We also note that most studies performed to date have not been properly replicated and collectively suffer from strong geographical sampling bias towards temperate biomes. We advocate that combining carefully replicated field experiments and controlled laboratory experiments with isotope labelling and -omics techniques offers great promise towards understanding differences in ecophysiology and ecosystem services among mycorrhizal types.
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Affiliation(s)
- Leho Tedersoo
- Natural History Museum, University of Tartu, 14a Ravila, 50411 Tartu, Estonia.,Institute of Ecology and Earth Sciences, University of Tartu, 14a Ravila, 50411 Tartu, Estonia
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, 14a Ravila, 50411 Tartu, Estonia.,Department of Ecology, Swedish University of Agricultural Sciences, Ulls väg 16, 756 51 Uppsala, Sweden
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25
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Zak DR, Pellitier PT, Argiroff W, Castillo B, James TY, Nave LE, Averill C, Beidler KV, Bhatnagar J, Blesh J, Classen AT, Craig M, Fernandez CW, Gundersen P, Johansen R, Koide RT, Lilleskov EA, Lindahl BD, Nadelhoffer KJ, Phillips RP, Tunlid A. Exploring the role of ectomycorrhizal fungi in soil carbon dynamics. THE NEW PHYTOLOGIST 2019; 223:33-39. [PMID: 30636276 DOI: 10.1111/nph.15679] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 01/07/2019] [Indexed: 05/26/2023]
Abstract
The extent to which ectomycorrhizal (ECM) fungi enable plants to access organic nitrogen (N) bound in soil organic matter (SOM) and transfer this growth-limiting nutrient to their plant host, has important implications for our understanding of plant-fungal interactions, and the cycling and storage of carbon (C) and N in terrestrial ecosystems. Empirical evidence currently supports a range of perspectives, suggesting that ECM vary in their ability to provide their host with N bound in SOM, and that this capacity can both positively and negatively influence soil C storage. To help resolve the multiplicity of observations, we gathered a group of researchers to explore the role of ECM fungi in soil C dynamics, and propose new directions that hold promise to resolve competing hypotheses and contrasting observations. In this Viewpoint, we summarize these deliberations and identify areas of inquiry that hold promise for increasing our understanding of these fundamental and widespread plant symbionts and their role in ecosystem-level biogeochemistry.
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Affiliation(s)
- Donald R Zak
- School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA
- Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Peter T Pellitier
- School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA
| | - WilliamA Argiroff
- School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Buck Castillo
- Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Timothy Y James
- Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Lucas E Nave
- Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Colin Averill
- Department of Earth and Environment, Boston University, Boston, MA, 02215, USA
| | - Kaitlyn V Beidler
- Department of Biology, Indiana University, Bloomington, IN, 47405, USA
| | | | - Jennifer Blesh
- School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Aimée T Classen
- The Rubenstein School of Environment & Natural Resources, University of Vermont, Burlington, VT, 05405, USA
- The Gund Institute for Environment, University of Vermont, Burlington, VT, 05405, USA
| | - Matthew Craig
- Department of Biology, Indiana University, Bloomington, IN, 47405, USA
| | | | - Per Gundersen
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Copenhagen, DK-1711, Denmark
| | - Renee Johansen
- Los Alamos National Laboratory, Santa Fe, NM, 87545, USA
| | - Roger T Koide
- Department of Biology, Brigham Young University, Provo, UT, 84602, USA
| | - Erik A Lilleskov
- US Forest Service, Northern Research Station, 410 Mac Innes Dr., Houghton, MI, 49931, USA
| | - Björn D Lindahl
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, SE-750 07, Sweden
| | - Knute J Nadelhoffer
- Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109, USA
| | | | - Anders Tunlid
- Department of Biology, Microbial Ecology Group, Lund University, Lund, SE-221 00, Sweden
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26
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Taxonomic update of Clitocybula sensu lato with a new generic classification. Fungal Biol 2019; 123:431-447. [DOI: 10.1016/j.funbio.2019.03.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 02/14/2019] [Accepted: 03/19/2019] [Indexed: 11/23/2022]
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27
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Truong C, Gabbarini LA, Corrales A, Mujic AB, Escobar JM, Moretto A, Smith ME. Ectomycorrhizal fungi and soil enzymes exhibit contrasting patterns along elevation gradients in southern Patagonia. THE NEW PHYTOLOGIST 2019; 222:1936-1950. [PMID: 30689219 DOI: 10.1111/nph.15714] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 01/21/2019] [Indexed: 06/09/2023]
Abstract
The biological and functional diversity of ectomycorrhizal (ECM) associations remain largely unknown in South America. In Patagonia, the ECM tree Nothofagus pumilio forms monospecific forests along mountain slopes without confounding effects of vegetation on plant-fungi interactions. To determine how fungal diversity and function are linked to elevation, we characterized fungal communities, edaphic variables, and eight extracellular enzyme activities along six elevation transects in Tierra del Fuego (Argentina and Chile). We also tested whether pairing ITS1 rDNA Illumina sequences generated taxonomic biases related to sequence length. Fungal community shifts across elevations were mediated primarily by soil pH with the most species-rich fungal families occurring mostly within a narrow pH range. By contrast, enzyme activities were minimally influenced by elevation but correlated with soil factors, especially total soil carbon. The activity of leucine aminopeptidase was positively correlated with ECM fungal richness and abundance, and acid phosphatase was correlated with nonECM fungal abundance. Several fungal lineages were undetected when using exclusively paired or unpaired forward ITS1 sequences, and these taxonomic biases need reconsideration for future studies. Our results suggest that soil fungi in N. pumilio forests are functionally similar across elevations and that these diverse communities help to maintain nutrient mobilization across the elevation gradient.
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Affiliation(s)
- Camille Truong
- Instituto de Biología, Universidad Nacional Autónoma de México, CP, 04510, Ciudad de México, México
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
| | - Luciano A Gabbarini
- Programa Interacciones Biológicas, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Bernal, Buenos Aires, B1876BX, Argentina
| | - Adriana Corrales
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
- Programa de Biología, Facultad de Ciencias Naturales y Matemáticas, Universidad del Rosario, Bogotá, DC, 111221, Colombia
| | - Alija B Mujic
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
- Department of Biology, California State University at Fresno, Fresno, CA, 93740, USA
| | - Julio M Escobar
- Centro Austral de Investigaciones Científicas (CONICET), Ushuaia, V9410BFD, Tierra del Fuego, Argentina
| | - Alicia Moretto
- Centro Austral de Investigaciones Científicas (CONICET), Ushuaia, V9410BFD, Tierra del Fuego, Argentina
- Universidad Nacional de Tierra del Fuego, Ushuaia, V9410BFD, Tierra del Fuego, Argentina
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
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Queralt M, Walker JKM, de Miguel AM, Parladé J, Anderson IC, Hortal S. The ability of a host plant to associate with different symbiotic partners affects ectomycorrhizal functioning. FEMS Microbiol Ecol 2019; 95:5491332. [PMID: 31101921 DOI: 10.1093/femsec/fiz069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Accepted: 05/16/2019] [Indexed: 11/13/2022] Open
Abstract
Some plants that associate with ectomycorrhizal (ECM) fungi are also able to simultaneously establish symbiosis with other types of partners. The presence of alternative partners that may provide similar benefits may affect ECM functioning. Here we compared potential leucine-aminopeptidase (LA) and acid phosphatase (AP) enzyme activity (involved in N and P cycling, respectively) in ECM fungi of three hosts planted under the same conditions but differing in the type of partners: Pinus (ECM fungi only), Eucalyptus (ECM and arbuscular mycorrhizal -AM- fungi) and Acacia (ECM, AM fungi and rhizobial bacteria). We found that the ECM community on Acacia and Eucalyptus had higher potential AP activity than the Pinus community. The ECM community in Acacia also showed increased potential LA activity compared to Pinus. Morphotypes present in more than one host showed higher potential AP and LA activity when colonizing Acacia than when colonizing another host. Our results suggest that competition with AM fungi and rhizobial bacteria could promote increased ECM activity in Eucalyptus and Acacia. Alternatively, other host-related differences such as ECM community composition could also play a role. We found evidence for ECM physiological plasticity when colonizing different hosts, which might be key for adaptation to future climate scenarios.
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Affiliation(s)
- M Queralt
- Facultad de Ciencias, Departamento de Biología Ambiental, Campus Universitario, Universidad de Navarra, 31080 Pamplona, Spain
| | - J K M Walker
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Locked Bag 1797, Penrith NSW 2751, Australia
| | - A M de Miguel
- Facultad de Ciencias, Departamento de Biología Ambiental, Campus Universitario, Universidad de Navarra, 31080 Pamplona, Spain
| | - J Parladé
- Sustainable Plant Protection, Institute for Research and Technology in Food and Agriculture (IRTA). Ctra. Cabrils km 2, 08348 Cabrils (Barcelona), Spain
| | - I C Anderson
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Locked Bag 1797, Penrith NSW 2751, Australia
| | - S Hortal
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Locked Bag 1797, Penrith NSW 2751, Australia
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29
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Effect of Deadwood on Ectomycorrhizal Colonisation of Old-Growth Oak Forests. FORESTS 2019. [DOI: 10.3390/f10060480] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Although the importance of coarse woody debris (CWD) for species diversity is recognized, the effects of coarse woody debris decay class on species composition have received little attention. We examined how the species composition of ectomycorrhizal fungi (ECM) changes with CWD decay. We describe ectomycorrhizal root tips and the diversity of mycorrhizal fungal species at three English oak (Quercus robur L.) sites. DNA barcoding revealed a total of 17 ECM fungal species. The highest degree of mycorrhizal colonization was found in CWDadvanced (27.2%) and CWDearly (27.1%). Based on exploration types, ectomycorrhizae were classified with respect to ecologically relevant soil features. The short distance type was significantly correlated with soil P2O5, while the contact type was correlated with soil C/N. The lowest mean content of soil Corg was found in the CWDabsent site. The difference in total soil N between sites decreased with increasing CWD decomposition, whereas total C/N increased correspondingly. In this study we confirmed that soil CWD stimulates ectomycorrhizal fungi, representing contact or short-distance exploration types of mycelium.
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30
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Lilleskov EA, Kuyper TW, Bidartondo MI, Hobbie EA. Atmospheric nitrogen deposition impacts on the structure and function of forest mycorrhizal communities: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 246:148-162. [PMID: 30543941 DOI: 10.1016/j.envpol.2018.11.074] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 11/21/2018] [Accepted: 11/23/2018] [Indexed: 05/05/2023]
Abstract
Humans have dramatically increased atmospheric nitrogen (N) deposition globally. At the coarsest resolution, N deposition is correlated with shifts from ectomycorrhizal (EcM) to arbuscular mycorrhizal (AM) tree dominance. At finer resolution, ectomycorrhizal fungal (EcMF) and arbuscular mycorrhizal fungal (AMF) communities respond strongly to long-term N deposition with the disappearance of key taxa. Conifer-associated EcMF are more sensitive than other EcMF, with current estimates of critical loads at 5-6 kg ha-1 yr-1 for the former and 10-20 kg ha-1 yr-1 for the latter. Where loads are exceeded, strong plant-soil and microbe-soil feedbacks may slow recovery rates after abatement of N deposition. Critical loads for AMF and tropical EcMF require additional study. In general, the responses of EcMF to N deposition are better understood than those of AMF because of methodological tractability. Functional consequences of EcMF community change are linked to decreases by fungi with medium-distance exploration strategies, hydrophobic walls, proteolytic capacity, and perhaps peroxidases for acquiring N from soil organic matter. These functional losses may contribute to declines in forest floor decomposition under N deposition. For AMF, limited capacity to directly access complexed organic N may reduce functional consequences, but research is needed to test this hypothesis. Mycorrhizal biomass often declines with N deposition, but the relative contributions of alternate mechanisms for this decline (lower C supply, higher C cost, physiological stress by N) have not been quantified. Furthermore, fungal biomass and functional responses to N inputs probably depend on ecosystem P status, yet how N deposition-induced P limitation interacts with belowground C flux and mycorrhizal community structure and function is still unclear. Current 'omic analyses indicate potential functional differences among fungal lineages and should be integrated with studies of physiology, host nutrition, growth and health, fungal and plant community structure, and ecosystem processes.
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Affiliation(s)
- Erik A Lilleskov
- Forestry Sciences Laboratory, USDA Forest Service, Northern Research Station, 410 MacInnes Dr, Houghton, MI, 49931, USA.
| | - Thomas W Kuyper
- Soil Biology Group, Wageningen University and Research, Droevendaalsesteeg 3, NL-6708 PB, Wageningen, Netherlands.
| | - Martin I Bidartondo
- Department of Life Sciences, Imperial College London, London, SW7 2AZ, England, UK; Comparative Plant & Fungal Biology, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, England, UK.
| | - Erik A Hobbie
- Earth Systems Research Center, University of New Hampshire, 8 College Road, Durham, NH, 03824-0322, USA.
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31
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Bauters M, Verbeeck H, Rütting T, Barthel M, Bazirake Mujinya B, Bamba F, Bodé S, Boyemba F, Bulonza E, Carlsson E, Eriksson L, Makelele I, Six J, Cizungu Ntaboba L, Boeckx P. Contrasting nitrogen fluxes in African tropical forests of the Congo Basin. ECOL MONOGR 2019. [DOI: 10.1002/ecm.1342] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Marijn Bauters
- Isotope Bioscience Laboratory - ISOFYS; Department of Green Chemistry and Technology; Ghent University; Coupure Links 653 9000 Gent Belgium
- CAVElab, Computational and Applied Vegetation Ecology; Department of Environment; Ghent University; Coupure Links 653 9000 Gent Belgium
| | - Hans Verbeeck
- CAVElab, Computational and Applied Vegetation Ecology; Department of Environment; Ghent University; Coupure Links 653 9000 Gent Belgium
| | - Tobias Rütting
- Department of Earth Sciences; University of Gothenburg; Box 460 405 30 Gothenburg Sweden
| | - Matti Barthel
- Sustainable Agroecosystems; Department of Environmental Systems Science; ETH Zürich; Tannenstrasse 1 8092 Zürich Switzerland
| | - Basile Bazirake Mujinya
- Laboratory of Soil Science; Department of General Agricultural Sciences; University of Lubumbashi; PO Box 1825 Lubumbashi Democratic Republic of Congo
| | - Fernando Bamba
- Faculté d'Agronomie; Université Catholique de Bukavu; Avenue de la Mission, Box 285 Bukavu Democratic Republic of Congo
| | - Samuel Bodé
- Isotope Bioscience Laboratory - ISOFYS; Department of Green Chemistry and Technology; Ghent University; Coupure Links 653 9000 Gent Belgium
| | - Faustin Boyemba
- Plant Department; Faculty of Science; Université de Kisangani; Kisangani Democratic Republic of Congo
| | - Emmanuel Bulonza
- Faculté d'Agronomie; Université Catholique de Bukavu; Avenue de la Mission, Box 285 Bukavu Democratic Republic of Congo
| | - Elin Carlsson
- Department of Earth Sciences; University of Gothenburg; Box 460 405 30 Gothenburg Sweden
| | - Linnéa Eriksson
- Department of Earth Sciences; University of Gothenburg; Box 460 405 30 Gothenburg Sweden
| | - Isaac Makelele
- Faculté d'Agronomie; Université Catholique de Bukavu; Avenue de la Mission, Box 285 Bukavu Democratic Republic of Congo
| | - Johan Six
- Sustainable Agroecosystems; Department of Environmental Systems Science; ETH Zürich; Tannenstrasse 1 8092 Zürich Switzerland
| | - Landry Cizungu Ntaboba
- Faculté d'Agronomie; Université Catholique de Bukavu; Avenue de la Mission, Box 285 Bukavu Democratic Republic of Congo
| | - Pascal Boeckx
- Isotope Bioscience Laboratory - ISOFYS; Department of Green Chemistry and Technology; Ghent University; Coupure Links 653 9000 Gent Belgium
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Corrales A, Henkel TW, Smith ME. Ectomycorrhizal associations in the tropics - biogeography, diversity patterns and ecosystem roles. THE NEW PHYTOLOGIST 2018; 220:1076-1091. [PMID: 29689121 DOI: 10.1111/nph.15151] [Citation(s) in RCA: 63] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 02/20/2018] [Indexed: 06/08/2023]
Abstract
Contents Summary 1076 I. Introduction 1076 II. Historical overview 1077 III. Identities and distributions of tropical ectomycorrhizal plants 1077 IV. Dominance of tropical forests by ECM trees 1078 V. Biogeography of tropical ECM fungi 1081 VI. Beta diversity patterns in tropical ECM fungal communities 1082 VII. Conclusions and future research 1086 Acknowledgements 1087 References 1087 SUMMARY: Ectomycorrhizal (ECM) associations were historically considered rare or absent from tropical ecosystems. Although most tropical forests are dominated by arbuscular mycorrhizal (AM) trees, ECM associations are widespread and found in all tropical regions. Here, we highlight emerging patterns of ECM biogeography, diversity and ecosystem functions, identify knowledge gaps, and offer direction for future research. At the continental and regional scales, tropical ECM systems are highly diverse and vary widely in ECM plant and fungal abundance, diversity, composition and phylogenetic affinities. We found strong regional differences among the dominant host plant families, suggesting that biogeographical factors strongly influence tropical ECM symbioses. Both ECM plants and fungi also exhibit strong turnover along altitudinal and soil fertility gradients, suggesting niche differentiation among taxa. Ectomycorrhizal fungi are often more abundant and diverse in sites with nutrient-poor soils, suggesting that ECM associations can optimize plant nutrition and may contribute to the maintenance of tropical monodominant forests. More research is needed to elucidate the diversity patterns of ECM fungi and plants in the tropics and to clarify the role of this symbiosis in nutrient and carbon cycling.
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Affiliation(s)
- Adriana Corrales
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA
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Korotkin HB, Swenie RA, Miettinen O, Budke JM, Chen KH, Lutzoni F, Smith ME, Matheny PB. Stable isotope analyses reveal previously unknown trophic mode diversity in the Hymenochaetales. AMERICAN JOURNAL OF BOTANY 2018; 105:1869-1887. [PMID: 30368779 DOI: 10.1002/ajb2.1183] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Accepted: 08/02/2018] [Indexed: 06/08/2023]
Abstract
PREMISE OF THE STUDY The Hymenochaetales are dominated by lignicolous saprotrophic fungi involved in wood decay. However, the group also includes bryophilous and terricolous taxa, but their modes of nutrition are not clear. Here, we investigate patterns of carbon and nitrogen utilization in numerous non-lignicolous Hymenochaetales and provide a phylogenetic context in which these non-canonical ecological guilds arose. METHODS We combined stable isotope analyses of δ13 C and δ15 N and phylogenetic analyses to explore assignment and evolution of nutritional modes. Clustering procedures and statistical tests were performed to assign trophic modes to Hymenochaetales and test for differences between varying ecologies. Genomes of Hymenochaetales were mined for presence of enzymes involved in plant cell wall and lignin degradation and sucrolytic activity. KEY RESULTS Three different trophic clusters were detected - biotrophic, saprotrophic, and a second biotrophic cluster including many bryophilous Hymenochaetales and mosses. Non-lignicolous Hymenochaetales are generally biotrophic. All lignicolous Hymenochaetales clustered as saprotrophic and most terricolous Hymenochaetales clustered as ectomycorrhizal. Overall, at least 15 species of Hymenochaetales are inferred as biotrophic. Bryophilous species of Rickenella can degrade plant cell walls and lignin, and cleave sucrose to glucose consistent with a parasitic or endophytic life style. CONCLUSIONS Most non-lignicolous Hymenochaetales are biotrophic. Stable isotope values of many bryophilous Hymenochaetales cluster as ectomycorrhizal or in a biotrophic cluster indicative of parasitism or an endophytic life style. Overall, trophic mode diversity in the Hymenochaetales is greater than anticipated, and non-lignicolous ecological traits and biotrophic modes of nutrition are evolutionarily derived features.
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Affiliation(s)
- Hailee B Korotkin
- Department of Ecology and Evolutionary Biology, University of Tennessee, 1416 Circle Drive, Knoxville, Tennessee, 37996, USA
| | - Rachel A Swenie
- Department of Ecology and Evolutionary Biology, University of Tennessee, 1416 Circle Drive, Knoxville, Tennessee, 37996, USA
| | - Otto Miettinen
- Botanical Museum, Finnish Museum of Natural History, University of Helsinki, PO Box 7, FI-00014, Finland
| | - Jessica M Budke
- Department of Ecology and Evolutionary Biology, University of Tennessee, 1416 Circle Drive, Knoxville, Tennessee, 37996, USA
| | - Ko-Hsuan Chen
- Department of Biology, Duke University, Box 90338, Durham, North Carolina, 27708, USA
| | - François Lutzoni
- Department of Biology, Duke University, Box 90338, Durham, North Carolina, 27708, USA
| | - Matthew E Smith
- Institute of Food and Agricultural Sciences, Plant Pathology, University of Florida, 2550 Hull Road, Gainesville, Florida, 32611, USA
| | - P Brandon Matheny
- Department of Ecology and Evolutionary Biology, University of Tennessee, 1416 Circle Drive, Knoxville, Tennessee, 37996, USA
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34
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Rasmussen AL, Brewer JS, Jackson CR, Hoeksema JD. Tree thinning and fire affect ectomycorrhizal fungal communities and enzyme activities. Ecosphere 2018. [DOI: 10.1002/ecs2.2471] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- Ann L. Rasmussen
- Department of Biology University of Mississippi University Mississippi 38677‐1848 USA
| | - J. Stephen Brewer
- Department of Biology University of Mississippi University Mississippi 38677‐1848 USA
| | - Colin R. Jackson
- Department of Biology University of Mississippi University Mississippi 38677‐1848 USA
| | - Jason D. Hoeksema
- Department of Biology University of Mississippi University Mississippi 38677‐1848 USA
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Halbwachs H, Easton GL, Bol R, Hobbie EA, Garnett MH, Peršoh D, Dixon L, Ostle N, Karasch P, Griffith GW. Isotopic evidence of biotrophy and unusual nitrogen nutrition in soil-dwelling Hygrophoraceae. Environ Microbiol 2018; 20:3573-3588. [PMID: 30105856 PMCID: PMC6849620 DOI: 10.1111/1462-2920.14327] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 06/14/2018] [Accepted: 06/14/2018] [Indexed: 02/04/2023]
Abstract
Several lines of evidence suggest that the agaricoid, non-ectomycorrhizal members of the family Hygrophoraceae (waxcaps) are biotrophic with unusual nitrogen nutrition. However, methods for the axenic culture and lab-based study of these organisms remain to be developed, so our current knowledge is limited to field-based investigations. Addition of nitrogen, lime or organophosphate pesticide at an experimental field site (Sourhope) suppressed fruiting of waxcap basidiocarps. Furthermore, stable isotope natural abundance in basidiocarps were unusually high in 15 N and low in 13 C, the latter consistent with mycorrhizal nutritional status. Similar patterns were found in waxcap basidiocarps from diverse habitats across four continents. Additional data from 14 C analysis of basidiocarps and 13 C pulse label experiments suggest that these fungi are not saprotrophs but rather biotrophic endophytes and possibly mycorrhizal. The consistently high but variable δ15 N values (10-20‰) of basidiocarps further indicate that N acquisition or processing differ from other fungi; we suggest that N may be derived from acquisition of N via soil fauna high in the food chain.
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Affiliation(s)
- Hans Halbwachs
- Bavarian Forest National ParkFreyunger Str. 2, 94481, GrafenauGermany
| | - Gary L. Easton
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAdeilad Cledwyn, Penglais, Aberystwyth, Ceredigion, SY23 3DD, WalesUK
| | - Roland Bol
- Institute of Bio‐ and Geosciences, Agrosphere (IBG‐3). Forschungszentrum Jülich GmbHWilhelm‐Johnen‐Straße, 52428, JülichGermany
| | - Erik A. Hobbie
- Earth Systems Research Center, Morse HallUniversity of New Hampshire8 College Road, DurhamNH, 03824‐3525USA
| | - Mark H Garnett
- NERC Radiocarbon FacilityScottish Enterprise Technology ParkRankine Avenue, East Kilbride, G75 0QFScotland, UK
| | - Derek Peršoh
- Department of GeobotanyRuhr‐Universität BochumGebäude ND 03/170, Universitätsstraße 150, 44780, BochumGermany
| | - Liz Dixon
- Sustainable Soils and Grassland Systems, Rothamsted ResearchNorth Wyke, Okehampton, Devon, EX20 2SBEngland, UK
| | - Nick Ostle
- Lancaster Environment CentreLancaster UniversityLancaster, LA1 4YQEngland, UK
| | - Peter Karasch
- German Mycological SocietyKirchl 78. D‐94545, HohenauGermany
| | - Gareth W. Griffith
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAdeilad Cledwyn, Penglais, Aberystwyth, Ceredigion, SY23 3DD, WalesUK
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Patterns in Ectomycorrhizal Diversity, Community Composition, and Exploration Types in European Beech, Pine, and Spruce Forests. FORESTS 2018. [DOI: 10.3390/f9080445] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Ectomycorrhizal (EM) fungi are pivotal drivers of ecosystem functioning in temperate and boreal forests. They constitute an important pathway for plant-derived carbon into the soil and facilitate nitrogen and phosphorus acquisition. However, the mechanisms that drive ectomycorrhizal diversity and community composition are still subject to discussion. We investigated patterns in ectomycorrhizal diversity, community composition, and exploration types on root tips in Fagus sylvatica,Picea abies, and Pinus sylvestris stands across Europe. Host tree species is the most important factor shaping the ectomycorrhizal community as well as the distribution of exploration types. Moreover, abiotic factors such as soil properties, N deposition, temperature, and precipitation, were found to significantly influence EM diversity and community composition. A clear differentiation into functional traits by means of exploration types was shown for all ectomycorrhizal communities across the three analyzed tree species. Contact and short-distance exploration types were clearly significantly more abundant than cord- or rhizomorph-forming long-distance exploration types of EM fungi. Medium-distance exploration types were significantly lower in abundance than contact and short-distance types, however they were the most frequent EM taxa and constituted nearly half of the EM community. Furthermore, EM taxa exhibit distinct ecological ranges, and the type of soil exploration seemed to determine whether EM taxa have small or rather big environmental ranges.
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37
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Acclimation of Fine Root Systems to Soil Warming: Comparison of an Experimental Setup and a Natural Soil Temperature Gradient. Ecosystems 2018. [DOI: 10.1007/s10021-018-0280-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Mello A, Balestrini R. Recent Insights on Biological and Ecological Aspects of Ectomycorrhizal Fungi and Their Interactions. Front Microbiol 2018; 9:216. [PMID: 29497408 PMCID: PMC5818412 DOI: 10.3389/fmicb.2018.00216] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 01/30/2018] [Indexed: 12/21/2022] Open
Abstract
The roots of most terrestrial plants are colonized by mycorrhizal fungi. They play a key role in terrestrial environments influencing soil structure and ecosystem functionality. Around them a peculiar region, the mycorrhizosphere, develops. This is a very dynamic environment where plants, soil and microorganisms interact. Interest in this fascinating environment has increased over the years. For a long period the knowledge of the microbial populations in the rhizosphere has been limited, because they have always been studied by traditional culture-based techniques. These methods, which only allow the study of cultured microorganisms, do not allow the characterization of most organisms existing in nature. The introduction in the last few years of methodologies that are independent of culture techniques has bypassed this limitation. This together with the development of high-throughput molecular tools has given new insights into the biology, evolution, and biodiversity of mycorrhizal associations, as well as, the molecular dialog between plants and fungi. The genomes of many mycorrhizal fungal species have been sequenced so far allowing to better understanding the lifestyle of these fungi, their sexual reproduction modalities and metabolic functions. The possibility to detect the mycelium and the mycorrhizae of heterothallic fungi has also allowed to follow the spatial and temporal distributional patterns of strains of different mating types. On the other hand, the availability of the genome sequencing from several mycorrhizal fungi with a different lifestyle, or belonging to different groups, allowed to verify the common feature of the mycorrhizal symbiosis as well as the differences on how different mycorrhizal species interact and dialog with the plant. Here, we will consider the aspects described before, mainly focusing on ectomycorrhizal fungi and their interactions with plants and other soil microorganisms.
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Affiliation(s)
- Antonietta Mello
- Institute for Sustainable Plant Protection (IPSP), Torino Unit, National Research Council, Turin, Italy
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Koizumi T, Hattori M, Nara K. Ectomycorrhizal fungal communities in alpine relict forests of Pinus pumila on Mt. Norikura, Japan. MYCORRHIZA 2018; 28:129-145. [PMID: 29330574 DOI: 10.1007/s00572-017-0817-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 12/19/2017] [Indexed: 06/07/2023]
Abstract
Ectomycorrhizal (ECM) symbioses are indispensable for the establishment of host trees, yet available information of ECM symbiosis in alpine forests is scarce. Pinus pumila is a typical ice age relict tree species in Japan and often forms monodominant dwarf vegetation above the tree line in mountains. We studied ECM fungi colonizing P. pumila on Mt. Norikura, Japan, with reference to host developmental stages, i.e., from current-year seedlings to mature trees. ECM fungal species were identified based on rDNA ITS sequences. Ninety-two ECM fungal species were confirmed from a total of 2480 root tips examined. Species in /suillus-rhizopogon and /wilcoxina were dominant in seedling roots. ECM fungal diversity increased with host development, due to the addition of species-rich fungal lineages (/cenococcum, /cortinarius, and /russula-lactarius) in late-successional stages. Such successional pattern of ECM fungi is similar to those in temperate pine systems, suggesting the predominant role of /suillus-rhizopogon in seedling establishment, even in relict alpine habitats fragmented and isolated for a geological time period. Most of the ECM fungi detected were also recorded in Europe or North America, indicating their potential Holarctic distribution and the possibility of their comigration with P. pumila through land bridges during ice ages. In addition, we found significant effects of soil properties on ECM fungal communities, which explained 34.1% of the total variation of the fungal communities. While alpine vegetation is regarded as vulnerable to the ongoing global warming, ECM fungal communities associated with P. pumila could be altered by the edaphic change induced by the warming.
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Affiliation(s)
- Takahiko Koizumi
- Department of Natural Environmental Studies, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8563, Japan.
| | - Masahira Hattori
- Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan
| | - Kazuhide Nara
- Department of Natural Environmental Studies, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8563, Japan
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40
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Rúa MA, Lamit LJ, Gehring C, Antunes PM, Hoeksema JD, Zabinski C, Karst J, Burns C, Woods MJ. Accounting for local adaptation in ectomycorrhizas: a call to track geographical origin of plants, fungi, and soils in experiments. MYCORRHIZA 2018; 28:187-195. [PMID: 29181636 DOI: 10.1007/s00572-017-0811-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 11/16/2017] [Indexed: 06/07/2023]
Abstract
Local adaptation, the differential success of genotypes in their native versus foreign environments, can influence ecological and evolutionary processes, yet its importance is difficult to estimate because it has not been widely studied, particularly in the context of interspecific interactions. Interactions between ectomycorrhizal (EM) fungi and their host plants could serve as model system for investigations of local adaptation because they are widespread and affect plant responses to both biotic and abiotic selection pressures. Furthermore, because EM fungi cycle nutrients and mediate energy flow into food webs, their local adaptation may be critical in sustaining ecological function. Despite their ecological importance and an extensive literature on their relationships with plants, the vast majority of experiments on EM symbioses fail to report critical information needed to assess local adaptation: the geographic origin of the plant, fungal inocula, and soil substrate used in the experiment. These omissions limit the utility of such studies and restrict our understanding of EM ecology and evolution. Here, we illustrate the potential importance of local adaptation in EM relationships and call for consistent reporting of the geographic origin of plant, soil, and fungi as an important step towards a better understanding of the ecology and evolution of EM symbioses.
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Affiliation(s)
- Megan A Rúa
- Department of Biological Sciences, Wright State University, 3640 Colonel Glenn Hwy, Dayton, OH, 45435, USA.
| | - Louis J Lamit
- Department of Biology, Syracuse University, 107 College Place, Syracuse, NY, 13244, USA
| | - Catherine Gehring
- Department of Biological Sciences and Merriam-Powell Center for Environmental Research, Northern Arizona University, 617 S. Beaver Street, Flagstaff, AZ, 86011-5640, USA
| | - Pedro M Antunes
- Department of Biology, Algoma University, 1520 Queen Street East, Sault Ste. Marie, Ontario, P6A 2G4, Canada
| | - Jason D Hoeksema
- Department of Biology, University of Mississippi, P.O. Box 1848, University, MS, 38677, USA
| | - Cathy Zabinski
- Department of Land Resources and Environmental Sciences, Montana State University, 344 Leon Johnson Hall, Bozeman, MT, 59717, USA
| | - Justine Karst
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, T6G 2E3, Canada
| | - Cole Burns
- Department of Biological Sciences, University of Calgary, 284 Biological Sciences, Calgary, Alberta, T2N 1N4, Canada
| | - Michaela J Woods
- Department of Biological Sciences, Wright State University, 3640 Colonel Glenn Hwy, Dayton, OH, 45435, USA
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41
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Matheny PB, Henkel TW, Séné O, Korotkin HB, Dentinger BT, Aime MC. New species of Auritella ( Inocybaceae) from Cameroon, with a worldwide key to the known species. IMA Fungus 2017; 8:287-298. [PMID: 29242776 PMCID: PMC5729713 DOI: 10.5598/imafungus.2017.08.02.06] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Accepted: 10/13/2017] [Indexed: 10/25/2022] Open
Abstract
Two new species in the genus Auritella (Inocybaceae) are described as new from tropical rainforest in Cameroon. Descriptions, photographs, line drawings, and a worldwide taxonomic key to the described species of Auritella are presented. Phylogenetic analysis of 28S rDNA and rpb2 nucleotide sequence data suggests at least five phylogenetic species that can be ascribed to Auritella occur in the region comprising Cameroon and Gabon and constitute a strongly supported monophyletic subgroup within the genus. Phylogenetic analysis of ITS data supports the conspecificity of numerous collections attributed to the two new species as well as the monophyly of Australian species of Auritella. This work raises the known number of described species of Auritella to thirteen worldwide, four of which occur in tropical Africa, one in tropical India, and eight in temperate and tropical regions of Australia. This is the first study to confirm an ectomycorrhizal status of Auritella using molecular data.
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Affiliation(s)
- P. Brandon Matheny
- Department of Ecology and Evolutionary Biology, University of Tennessee, 569 Dabney Hall, Knoxville, TN 37996-1610, USA
| | - Terry W. Henkel
- Department of Biological Sciences, Humboldt State University, 1 Harpst St., Arcata, CA 95521, USA
| | - Olivier Séné
- Institute of Agricultural Research for Development, National Herbarium of Cameroon, PO Box 1601, Yaoundé, Cameroon
| | - Hailee B. Korotkin
- Department of Ecology and Evolutionary Biology, University of Tennessee, 569 Dabney Hall, Knoxville, TN 37996-1610, USA
| | - Bryn T.M. Dentinger
- Utah Museum of Natural History and Department of Biology, University of Utah, Salt Lake City, UT 84112, USA
| | - M. Catherine Aime
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA
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42
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Lin G, Guo D, Li L, Ma C, Zeng DH. Contrasting effects of ectomycorrhizal and arbuscular mycorrhizal tropical tree species on soil nitrogen cycling: the potential mechanisms and corresponding adaptive strategies. OIKOS 2017. [DOI: 10.1111/oik.04751] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Guigang Lin
- CAS Key Laboratory of Forest Ecology and Management, Inst. of Applied Ecology, Chinese Academy of Sciences; CN-110016 Shenyang PR China
- Daqinggou Ecological Station, Inst. of Applied Ecology, Chinese Academy of Sciences; Shenyang PR China
| | - Dali Guo
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Inst. of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences; Beijing PR China
| | - Liang Li
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Inst. of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences; Beijing PR China
| | - Chengen Ma
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Inst. of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences; Beijing PR China
| | - De-Hui Zeng
- CAS Key Laboratory of Forest Ecology and Management, Inst. of Applied Ecology, Chinese Academy of Sciences; CN-110016 Shenyang PR China
- Daqinggou Ecological Station, Inst. of Applied Ecology, Chinese Academy of Sciences; Shenyang PR China
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43
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Hiiesalu I, Bahram M, Tedersoo L. Plant species richness and productivity determine the diversity of soil fungal guilds in temperate coniferous forest and bog habitats. Mol Ecol 2017; 26:4846-4858. [DOI: 10.1111/mec.14246] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 06/27/2017] [Indexed: 01/06/2023]
Affiliation(s)
- Indrek Hiiesalu
- Institute of Ecology and Earth Sciences; University of Tartu; Tartu Estonia
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences; University of Tartu; Tartu Estonia
- Department of Organismal Biology; Evolutionary Biology Centre; Uppsala University; Norbyvägen Uppsala Sweden
| | - Leho Tedersoo
- Natural History Museum; University of Tartu; Tartu Estonia
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44
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Nitrogen addition alters ectomycorrhizal fungal communities and soil enzyme activities in a tropical montane forest. FUNGAL ECOL 2017. [DOI: 10.1016/j.funeco.2017.02.004] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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45
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Pent M, Põldmaa K, Bahram M. Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity. Front Microbiol 2017; 8:836. [PMID: 28539921 PMCID: PMC5423949 DOI: 10.3389/fmicb.2017.00836] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2016] [Accepted: 04/24/2017] [Indexed: 12/21/2022] Open
Abstract
Despite recent advances in understanding the microbiome of eukaryotes, little is known about microbial communities in fungi. Here we investigate the structure of bacterial communities in mushrooms, including common edible ones, with respect to biotic and abiotic factors in the boreal forest. Using a combination of culture-based and Illumina high-throughput sequencing, we characterized the bacterial communities in fruitbodies of fungi from eight genera spanning four orders of the class Agaricomycetes (Basidiomycota). Our results revealed that soil pH followed by fungal identity are the main determinants of the structure of bacterial communities in mushrooms. While almost half of fruitbody bacteria were also detected from soil, the abundance of several bacterial taxa differed considerably between the two environments. The effect of host identity was significant at the fungal genus and order level and could to some extent be ascribed to the distinct bacterial community of the chanterelle, representing Cantharellales-the earliest diverged group of mushroom-forming basidiomycetes. These data suggest that besides the substantial contribution of soil as a major taxa source of bacterial communities in mushrooms, the structure of these communities is also affected by the identity of the host. Thus, bacteria inhabiting fungal fruitbodies may be non-randomly selected from environment based on their symbiotic functions and/or habitat requirements.
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Affiliation(s)
- Mari Pent
- Department of Botany, Institute of Ecology and Earth Sciences, University of TartuTartu, Estonia
| | - Kadri Põldmaa
- Department of Botany, Institute of Ecology and Earth Sciences, University of TartuTartu, Estonia
| | - Mohammad Bahram
- Department of Botany, Institute of Ecology and Earth Sciences, University of TartuTartu, Estonia
- Department of Organismal Biology, Evolutionary Biology Centre, Uppsala UniversityUppsala, Sweden
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Pena R, Lang C, Lohaus G, Boch S, Schall P, Schöning I, Ammer C, Fischer M, Polle A. Phylogenetic and functional traits of ectomycorrhizal assemblages in top soil from different biogeographic regions and forest types. MYCORRHIZA 2017; 27:233-245. [PMID: 27885418 DOI: 10.1007/s00572-016-0742-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 10/28/2016] [Indexed: 05/05/2023]
Abstract
Ectomycorrhizal (EM) fungal taxonomic, phylogenetic, and trait diversity (exploration types) were analyzed in beech and conifer forests along a north-to-south gradient in three biogeographic regions in Germany. The taxonomic community structures of the ectomycorrhizal assemblages in top soil were influenced by stand density and forest type, by biogeographic environmental factors (soil physical properties, temperature, and precipitation), and by nitrogen forms (amino acids, ammonium, and nitrate). While α-diversity did not differ between forest types, β-diversity increased, leading to higher γ-diversity on the landscape level when both forest types were present. The highest taxonomic diversity of EM was found in forests in cool, moist climate on clay and silty soils and the lowest in the forests in warm, dry climate on sandy soils. In the region with higher taxonomic diversity, phylogenetic clustering was found, but not trait clustering. In the warm region, trait clustering occurred despite neutral phylogenetic effects. These results suggest that different forest types and favorable environmental conditions in forests promote high EM species richness in top soil presumably with both high functional diversity and phylogenetic redundancy, while stressful environmental conditions lead to lower species richness and functional redundancy.
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Affiliation(s)
- Rodica Pena
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
| | - Christa Lang
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
- Faculty of Communication and Environment, Rhine-Waal University of Applied Science, Friedrich-Heinrich-Allee 24, 47475, Kamp-Lintfort, Germany
| | - Gertrud Lohaus
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
- Bergische Universität Wuppertal, Molekulare Pflanzenforschung/Pflanzenbiochemie, Gaußstr. 20, 42119, Wuppertal, Germany
| | - Steffen Boch
- Institute of Plant Sciences and Botanical Garden, University of Bern, Altenbergrain 21, 3013, Bern, Switzerland
| | - Peter Schall
- Waldbau und Waldökologie der gemäßigten Zonen, Burkhard Institut, Georg-August Universität Göttingen, Büsgenweg 1, 37077, Göttingen, Germany
| | - Ingo Schöning
- Max-Planck-Institute for Biogeochemistry, Department Biogeochemical Processes, Hans-Knöll-Str. 10, 07745, Jena, Germany
| | - Christian Ammer
- Waldbau und Waldökologie der gemäßigten Zonen, Burkhard Institut, Georg-August Universität Göttingen, Büsgenweg 1, 37077, Göttingen, Germany
| | - Markus Fischer
- Institute of Plant Sciences and Botanical Garden, University of Bern, Altenbergrain 21, 3013, Bern, Switzerland
| | - Andrea Polle
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany.
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47
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Lin G, McCormack ML, Ma C, Guo D. Similar below-ground carbon cycling dynamics but contrasting modes of nitrogen cycling between arbuscular mycorrhizal and ectomycorrhizal forests. THE NEW PHYTOLOGIST 2017; 213:1440-1451. [PMID: 27678253 DOI: 10.1111/nph.14206] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2016] [Accepted: 08/15/2016] [Indexed: 05/18/2023]
Abstract
Compared with ectomycorrhizal (ECM) forests, arbuscular mycorrhizal (AM) forests are hypothesized to have higher carbon (C) cycling rates and a more open nitrogen (N) cycle. To test this hypothesis, we synthesized 645 observations, including 22 variables related to below-ground C and N dynamics from 100 sites, where AM and ECM forests co-occurred at the same site. Leaf litter quality was lower in ECM than in AM trees, leading to greater forest floor C stocks in ECM forests. By contrast, AM forests had significantly higher mineral soil C concentrations, and this result was strongly mediated by plant traits and climate. No significant differences were found between AM and ECM forests in C fluxes and labile C concentrations. Furthermore, inorganic N concentrations, net N mineralization and nitrification rates were all higher in AM than in ECM forests, indicating 'mineral' N economy in AM but 'organic' N economy in ECM trees. AM and ECM forests show systematic differences in mineral vs organic N cycling, and thus mycorrhizal type may be useful in predicting how different tree species respond to multiple environmental change factors. By contrast, mycorrhizal type alone cannot reliably predict below-ground C dynamics without considering plant traits and climate.
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Affiliation(s)
- Guigang Lin
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - M Luke McCormack
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Chengen Ma
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dali Guo
- Center of Forest Ecosystem Studies and Qianyanzhou Ecological Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
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48
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Plant Aquaporins and Mycorrhizae: Their Regulation and Involvement in Plant Physiology and Performance. PLANT AQUAPORINS 2017. [DOI: 10.1007/978-3-319-49395-4_15] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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49
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Morgado LN, Semenova TA, Welker JM, Walker MD, Smets E, Geml J. Long-term increase in snow depth leads to compositional changes in arctic ectomycorrhizal fungal communities. GLOBAL CHANGE BIOLOGY 2016; 22:3080-3096. [PMID: 27004610 DOI: 10.1111/gcb.13294] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 01/16/2016] [Accepted: 03/02/2016] [Indexed: 06/05/2023]
Abstract
Many arctic ecological processes are regulated by soil temperature that is tightly interconnected with snow cover distribution and persistence. Recently, various climate-induced changes have been observed in arctic tundra ecosystems, e.g. shrub expansion, resulting in reduction in albedo and greater C fixation in aboveground vegetation as well as increased rates of soil C mobilization by microbes. Importantly, the net effects of these shifts are unknown, in part because our understanding of belowground processes is limited. Here, we focus on the effects of increased snow depth, and as a consequence, increased winter soil temperature on ectomycorrhizal (ECM) fungal communities in dry and moist tundra. We analyzed deep DNA sequence data from soil samples taken at a long-term snow fence experiment in Northern Alaska. Our results indicate that, in contrast with previously observed responses of plants to increased snow depth at the same experimental site, the ECM fungal community of the dry tundra was more affected by deeper snow than the moist tundra community. In the dry tundra, both community richness and composition were significantly altered while in the moist tundra, only community composition changed significantly while richness did not. We observed a decrease in richness of Tomentella, Inocybe and other taxa adapted to scavenge the soil for labile N forms. On the other hand, richness of Cortinarius, and species with the ability to scavenge the soil for recalcitrant N forms, did not change. We further link ECM fungal traits with C soil pools. If future warmer atmospheric conditions lead to greater winter snow fall, changes in the ECM fungal community will likely influence C emissions and C fixation through altering N plant availability, fungal biomass and soil-plant C-N dynamics, ultimately determining important future interactions between the tundra biosphere and atmosphere.
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Affiliation(s)
- Luis N Morgado
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands
- Section for Genetics and Evolutionary Biology (Evogene), Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, NO-0316, Oslo, Norway
| | - Tatiana A Semenova
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands
- Faculty of Science, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
| | - Jeffrey M Welker
- Department of Biological Sciences, University of Alaska Anchorage, Anchorage, AK, USA
| | | | - Erik Smets
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands
- Faculty of Science, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
- Plant Conservation and Population Biology, KU Leuven, Kasteelpark Arenberg 31, Box 2437, 3001, Leuven, Belgium
| | - József Geml
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands
- Faculty of Science, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
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Moeller HV, Peay KG. Competition-function tradeoffs in ectomycorrhizal fungi. PeerJ 2016; 4:e2270. [PMID: 27547573 PMCID: PMC4974999 DOI: 10.7717/peerj.2270] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 06/29/2016] [Indexed: 11/20/2022] Open
Abstract
Background. The extent to which ectomycorrhizal fungi mediate primary production, carbon storage, and nutrient remineralization in terrestrial ecosystems depends upon fungal community composition. However, the factors that govern community composition at the root system scale are not well understood. Here, we explore a potential tradeoff between ectomycorrhizal fungal competitive ability and enzymatic function. Methods. We grew Pinus muricata (Bishop Pine) seedlings in association with ectomycorrhizal fungi from three different genera in a fully factorial experimental design. We measured seedling growth responses, ectomycorrhizal abundance, and the root tip activity of five different extracellular enzymes involved in the mobilization of carbon and phosphorus. Results. We found an inverse relationship between competitiveness, quantified based on relative colonization levels, and enzymatic activity. Specifically, Thelephora terrestris, the dominant fungus, had the lowest enzyme activity levels, while Suillus pungens, the least dominant fungus, had the highest. Discussion. Our results identify a tradeoff between competition and function in ectomycorrhizal fungi, perhaps mediated by the competing energetic demands associated with competitive interactions and enzymatic production. These data suggest that mechanisms such as active partner maintenance by host trees may be important to maintaining "high-quality" ectomycorrhizal fungal partners in natural systems.
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Affiliation(s)
- Holly V. Moeller
- Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
- Ecology, Evolution & Marine Biology, University of California, Santa Barbara, Santa Barbara, CA, USA
| | - Kabir G. Peay
- Department of Biology, Stanford University, Stanford, CA, USA
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