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Raletsena MV, Mongalo NI. The possible application of fly ash (FA) to ameliorate acid mine water (AMD) for irrigation of potato ( Solanum tuberosum L.). Heliyon 2024; 10:e32079. [PMID: 38947476 PMCID: PMC11214446 DOI: 10.1016/j.heliyon.2024.e32079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 05/27/2024] [Accepted: 05/28/2024] [Indexed: 07/02/2024] Open
Abstract
Some areas in Johannesburg abounds with mine wastes namely, acid mine drainage (AMD) as well as fly ash (FA), which are by-products of gold mining and coal burning, respectively. Studies show that a solution formed through mixing these wastes neutralises the acidity of AMD and is an alternative source of irrigation. While studies show improved growth and yield of plants irrigated with fly ash-amended AMD, there are rarely sufficient studies conducted in South Africa showing evidence of altered pH of AMD and that food crops irrigated with fly ash-amended AMD exhibit improved concentration of essential nutrient elements. In this study, AMD was sourced from a gold mine in Johannesburg and fly ash collected from a coal-burning power station in the Mpumalanga Province, mixed at 1:0, 1:1, and 3:1 (w/v) of fly ash to AMD and used to irrigate potatoes. The objective was to assess whether the solutions of FA-amended AMD alter the pH of the AMD and to evaluate if irrigating potatoes with the aforementioned improve the concentration of essential nutrient elements and heavy metals in the tubers. Results show that the pH of AMD was increased in the 1:0 and 1:1 solutions but decreased in the 3:1 solution. The concentrations of Pb and Co were decreased in tubers irrigated with the 50 % AMD and 75 % AMD while that of Ni and Cd were markedly increased in tubers irrigated with solutions of fly ash-amended AMD. In the main, the potato tubers exhibited significantly higher concentrations of Al, Mo, Cu, Ca, Mg, and Zn when irrigated with fly-ash-amended AMD. The pH range levels from FA-AMD treated samples were within the acceptable pH range (5.5-6.5) which is acceptable for water that could be used for irrigation of crops. Also, the decreased Co and Pb and improved concentration of essential nutrient elements indicate that the constituents absorbed large quantities of the heavy metals while releasing the nutrients. In conclusion, the selected fly ash has proven as an alternative low-cost readily-available, affordable, and accessible adsorbent that neutralize the acidity of AMD, decrease the concentration of heavy metals, and increase the concentration of essential nutrient elements. Importantly, the liming potential among other traits of the fly ash improved the quality of the AMD such that the wastes were proven in this study suitable to irrigate potatoes.
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Affiliation(s)
- Maropeng Vellry Raletsena
- College of Agriculture and Environmental Sciences, Department of Agriculture and Animal Health, CAES Laboratories, Private Bag X6, Florida, 1710, South Africa
| | - Nkoana Ishmael Mongalo
- College of Agriculture and Environmental Sciences, Department of Agriculture and Animal Health, CAES Laboratories, Private Bag X6, Florida, 1710, South Africa
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Cao VD, Luo G, Korynta S, Liu H, Liang Y, Shanklin J, Altpeter F. Intron-mediated enhancement of DIACYLGLYCEROL ACYLTRANSFERASE1 expression in energycane promotes a step change for lipid accumulation in vegetative tissues. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:153. [PMID: 37838699 PMCID: PMC10576891 DOI: 10.1186/s13068-023-02393-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Accepted: 09/09/2023] [Indexed: 10/16/2023]
Abstract
BACKGROUND Metabolic engineering for hyperaccumulation of lipids in vegetative tissues is a novel strategy for enhancing energy density and biofuel production from biomass crops. Energycane is a prime feedstock for this approach due to its high biomass production and resilience under marginal conditions. DIACYLGLYCEROL ACYLTRANSFERASE (DGAT) catalyzes the last and only committed step in the biosynthesis of triacylglycerol (TAG) and can be a rate-limiting enzyme for the production of TAG. RESULTS In this study, we explored the effect of intron-mediated enhancement (IME) on the expression of DGAT1 and resulting accumulation of TAG and total fatty acid (TFA) in leaf and stem tissues of energycane. To maximize lipid accumulation these evaluations were carried out by co-expressing the lipogenic transcription factor WRINKLED1 (WRI1) and the TAG protect factor oleosin (OLE1). Including an intron in the codon-optimized TmDGAT1 elevated the accumulation of its transcript in leaves by seven times on average based on 5 transgenic lines for each construct. Plants with WRI1 (W), DGAT1 with intron (Di), and OLE1 (O) expression (WDiO) accumulated TAG up to a 3.85% of leaf dry weight (DW), a 192-fold increase compared to non-modified energycane (WT) and a 3.8-fold increase compared to the highest accumulation under the intron-less gene combination (WDO). This corresponded to TFA accumulation of up to 8.4% of leaf dry weight, a 2.8-fold or 6.1-fold increase compared to WDO or WT, respectively. Co-expression of WDiO resulted in stem accumulations of TAG up to 1.14% of DW or TFA up to 2.08% of DW that exceeded WT by 57-fold or 12-fold and WDO more than twofold, respectively. Constitutive expression of these lipogenic "push pull and protect" factors correlated with biomass reduction. CONCLUSIONS Intron-mediated enhancement (IME) of the expression of DGAT resulted in a step change in lipid accumulation of energycane and confirmed that under our experimental conditions it is rate limiting for lipid accumulation. IME should be applied to other lipogenic factors and metabolic engineering strategies. The findings from this study may be valuable in developing a high biomass feedstock for commercial production of lipids and advanced biofuels.
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Affiliation(s)
- Viet Dang Cao
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, USA
| | - Guangbin Luo
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, USA
| | - Shelby Korynta
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, USA
| | - Hui Liu
- Biology Department, Brookhaven National Laboratory, Upton, NY, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Upton, NY, USA
| | - Yuanxue Liang
- Biology Department, Brookhaven National Laboratory, Upton, NY, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Upton, NY, USA
| | - John Shanklin
- Biology Department, Brookhaven National Laboratory, Upton, NY, USA.
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Upton, NY, USA.
- Biosciences Department, Brookhaven National Laboratory, Upton, NY, USA.
| | - Fredy Altpeter
- Agronomy Department, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, IFAS, Gainesville, FL, USA.
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Gainesville, FL, USA.
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Verma V, Kumar A, Partap M, Thakur M, Bhargava B. CRISPR-Cas: A robust technology for enhancing consumer-preferred commercial traits in crops. FRONTIERS IN PLANT SCIENCE 2023; 14:1122940. [PMID: 36824195 PMCID: PMC9941649 DOI: 10.3389/fpls.2023.1122940] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 01/16/2023] [Indexed: 06/18/2023]
Abstract
The acceptance of new crop varieties by consumers is contingent on the presence of consumer-preferred traits, which include sensory attributes, nutritional value, industrial products and bioactive compounds production. Recent developments in genome editing technologies provide novel insight to identify gene functions and improve the various qualitative and quantitative traits of commercial importance in plants. Various conventional as well as advanced gene-mutagenesis techniques such as physical and chemical mutagenesis, CRISPR-Cas9, Cas12 and base editors are used for the trait improvement in crops. To meet consumer demand, breakthrough biotechnologies, especially CRISPR-Cas have received a fair share of scientific and industrial interest, particularly in plant genome editing. CRISPR-Cas is a versatile tool that can be used to knock out, replace and knock-in the desired gene fragments at targeted locations in the genome, resulting in heritable mutations of interest. This review highlights the existing literature and recent developments in CRISPR-Cas technologies (base editing, prime editing, multiplex gene editing, epigenome editing, gene delivery methods) for reliable and precise gene editing in plants. This review also discusses the potential of gene editing exhibited in crops for the improvement of consumer-demanded traits such as higher nutritional value, colour, texture, aroma/flavour, and production of industrial products such as biofuel, fibre, rubber and pharmaceuticals. In addition, the bottlenecks and challenges associated with gene editing system, such as off targeting, ploidy level and the ability to edit organelle genome have also been discussed.
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Affiliation(s)
- Vipasha Verma
- Floriculture Laboratory, Agrotechnology Division, Council of Scientific and Industrial Research (CSIR) –Institute of Himalayan Bioresource Technology (IHBT), Palampur, India
| | - Akhil Kumar
- Floriculture Laboratory, Agrotechnology Division, Council of Scientific and Industrial Research (CSIR) –Institute of Himalayan Bioresource Technology (IHBT), Palampur, India
| | - Mahinder Partap
- Floriculture Laboratory, Agrotechnology Division, Council of Scientific and Industrial Research (CSIR) –Institute of Himalayan Bioresource Technology (IHBT), Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
| | - Meenakshi Thakur
- Floriculture Laboratory, Agrotechnology Division, Council of Scientific and Industrial Research (CSIR) –Institute of Himalayan Bioresource Technology (IHBT), Palampur, India
| | - Bhavya Bhargava
- Floriculture Laboratory, Agrotechnology Division, Council of Scientific and Industrial Research (CSIR) –Institute of Himalayan Bioresource Technology (IHBT), Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
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Chincinska IA, Miklaszewska M, Sołtys-Kalina D. Recent advances and challenges in potato improvement using CRISPR/Cas genome editing. PLANTA 2022; 257:25. [PMID: 36562862 PMCID: PMC9789015 DOI: 10.1007/s00425-022-04054-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 12/11/2022] [Indexed: 06/17/2023]
Abstract
Genome editing using CRISPR/Cas technology improves the quality of potato as a food crop and enables its use as both a model plant in fundamental research and as a potential biofactory for producing valuable compounds for industrial applications. Potato (Solanum tuberosum L.) plays a significant role in ensuring global food and nutritional security. Tuber yield is negatively affected by biotic and abiotic stresses, and enzymatic browning and cold-induced sweetening significantly contribute to post-harvest quality losses. With the dual challenges of a growing population and a changing climate, potato enhancement is essential for its sustainable production. However, due to several characteristics of potato, including high levels of heterozygosity, tetrasomic inheritance, inbreeding depression, and self-incompatibility of diploid potato, conventional breeding practices are insufficient to achieve substantial trait improvement in tetraploid potato cultivars within a relatively short time. CRISPR/Cas-mediated genome editing has opened new possibilities to develop novel potato varieties with high commercialization potential. In this review, we summarize recent developments in optimizing CRISPR/Cas-based methods for potato genome editing, focusing on approaches addressing the challenging biology of this species. We also discuss the feasibility of obtaining transgene-free genome-edited potato varieties and explore different strategies to improve potato stress resistance, nutritional value, starch composition, and storage and processing characteristics. Altogether, this review provides insight into recent advances, possible bottlenecks, and future research directions in potato genome editing using CRISPR/Cas technology.
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Affiliation(s)
- Izabela Anna Chincinska
- Department of Plant Physiology and Biotechnology, University of Gdańsk, Wita Stwosza 59, 80-308, Gdańsk, Poland.
| | - Magdalena Miklaszewska
- Department of Functional and Evolutionary Ecology, Division of Molecular Systems Biology (MOSYS), Faculty of Life Sciences, University of Vienna, Djerassiplatz 1, 1030, Vienna, Austria
| | - Dorota Sołtys-Kalina
- Plant Breeding and Acclimatization Institute-National Research Institute, Platanowa 19, 05-831, Młochów, Poland
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5
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Cai Y, Yu XH, Shanklin J. A toolkit for plant lipid engineering: Surveying the efficacies of lipogenic factors for accumulating specialty lipids. FRONTIERS IN PLANT SCIENCE 2022; 13:1064176. [PMID: 36589075 PMCID: PMC9795026 DOI: 10.3389/fpls.2022.1064176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
Plants produce energy-dense lipids from carbohydrates using energy acquired via photosynthesis, making plant oils an economically and sustainably attractive feedstock for conversion to biofuels and value-added bioproducts. A growing number of strategies have been developed and optimized in model plants, oilseed crops and high-biomass crops to enhance the accumulation of storage lipids (mostly triacylglycerols, TAGs) for bioenergy applications and to produce specialty lipids with increased uses and value for chemical feedstock and nutritional applications. Most successful metabolic engineering strategies involve heterologous expression of lipogenic factors that outperform those from other sources or exhibit specialized functionality. In this review, we summarize recent progress in engineering the accumulation of triacylglycerols containing - specialized fatty acids in various plant species and tissues. We also provide an inventory of specific lipogenic factors (including accession numbers) derived from a wide variety of organisms, along with their reported efficacy in supporting the accumulation of desired lipids. A review of previously obtained results serves as a foundation to guide future efforts to optimize combinations of factors to achieve further enhancements to the production and accumulation of desired lipids in a variety of plant tissues and species.
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Affiliation(s)
- Yingqi Cai
- Biology Department, Brookhaven National Laboratory, Upton, NY, United States
| | - Xiao-Hong Yu
- Biology Department, Brookhaven National Laboratory, Upton, NY, United States
- Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, United States
| | - John Shanklin
- Biology Department, Brookhaven National Laboratory, Upton, NY, United States
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6
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Cai Y, Zhai Z, Blanford J, Liu H, Shi H, Schwender J, Xu C, Shanklin J. Purple acid phosphatase2 stimulates a futile cycle of lipid synthesis and degradation, and mitigates the negative growth effects of triacylglycerol accumulation in vegetative tissues. THE NEW PHYTOLOGIST 2022; 236:1128-1139. [PMID: 35851483 DOI: 10.1111/nph.18392] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 07/07/2022] [Indexed: 06/15/2023]
Abstract
Storage lipids (mostly triacylglycerols, TAGs) serve as an important energy and carbon reserve in plants, and hyperaccumulation of TAG in vegetative tissues can have negative effects on plant growth. Purple acid phosphatase2 (PAP2) was previously shown to affect carbon metabolism and boost plant growth. However, the effects of PAP2 on lipid metabolism remain unknown. Here, we demonstrated that PAP2 can stimulate a futile cycle of fatty acid (FA) synthesis and degradation, and mitigate negative growth effects associated with high accumulation of TAG in vegetative tissues. Constitutive expression of PAP2 in Arabidopsis thaliana enhanced both lipid synthesis and degradation in leaves and led to a substantial increase in seed oil yield. Suppressing lipid degradation in a PAP2-overexpressing line by disrupting sugar-dependent1 (SDP1), a predominant TAG lipase, significantly elevated vegetative TAG content and improved plant growth. Diverting FAs from membrane lipids to TAGs in PAP2-overexpressing plants by constitutively expressing phospholipid:diacylglycerol acyltransferase1 (PDAT1) greatly increased TAG content in vegetative tissues without compromising biomass yield. These results highlight the potential of combining PAP2 with TAG-promoting factors to enhance carbon assimilation, FA synthesis and allocation to TAGs for optimized plant growth and storage lipid accumulation in vegetative tissues.
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Affiliation(s)
- Yingqi Cai
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Zhiyang Zhai
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Jantana Blanford
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Hui Liu
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Hai Shi
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Jorg Schwender
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Changcheng Xu
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - John Shanklin
- Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
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7
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Sharma I, Kirti PB, Pati PK. Autophagy: a game changer for plant development and crop improvement. PLANTA 2022; 256:103. [PMID: 36307739 DOI: 10.1007/s00425-022-04004-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Manipulation of autophagic pathway represents a tremendous opportunity for designing climate-smart crops with improved yield and better adaptability to changing environment. For exploiting autophagy to its full potential, identification and comprehensive characterization of adapters/receptor complex and elucidation of its regulatory network in crop plants is highly warranted. Autophagy is a major intracellular trafficking pathway in eukaryotes involved in vacuolar degradation of cytoplasmic constituents, mis-folded proteins, and defective organelles. Under optimum conditions, autophagy operates at a basal level to maintain cellular homeostasis, but under stressed conditions, it is induced further to provide temporal stress relief. Our understanding of this highly dynamic process has evolved exponentially in the past few years with special reference to several plant-specific roles of autophagy. Here, we review the most recent advances in the field of autophagy in plants and discuss its potential implications in designing crops with improved stress and disease-tolerance, enhanced yield potential, and improved capabilities for producing metabolites of high economic value. We also assess the current knowledge gaps and the possible strategies to develop a robust module for biotechnological application of autophagy to enhance bioeconomy and sustainability of agriculture.
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Affiliation(s)
- Isha Sharma
- AgriBiotech Foundation, PJTS Agriculture University, Rajendranagar, Hyderabad, Telangana, 500032, India.
- International Crops Research Institute for the Semi-Arid Tropics, 502324, Patancheru, Telangana, India.
| | | | - Pratap Kumar Pati
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, Punjab, 140301, India
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8
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Park ME, Kim HU. Applications and prospects of genome editing in plant fatty acid and triacylglycerol biosynthesis. FRONTIERS IN PLANT SCIENCE 2022; 13:969844. [PMID: 36119569 PMCID: PMC9471015 DOI: 10.3389/fpls.2022.969844] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 08/08/2022] [Indexed: 05/29/2023]
Abstract
Triacylglycerol (TAG), which is a neutral lipid, has a structure in which three molecules of fatty acid (FA) are ester-bonded to one molecule of glycerol. TAG is important energy source for seed germination and seedling development in plants. Depending on the FA composition of the TAG, it is used as an edible oil or industrial material for cosmetics, soap, and lubricant. As the demand for plant oil is rising worldwide, either the type of FA must be changed or the total oil content of various plants must be increased. In this review, we discuss the regulation of FA metabolism by Clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9, a recent genome-editing technology applicable to various plants. The development of plants with higher levels of oleic acid or lower levels of very long-chain fatty acids (VLCFAs) in seeds are discussed. In addition, the current status of research on acyltransferases, phospholipases, TAG lipases, and TAG synthesis in vegetative tissues is described. Finally, strategies for the application of CRISPR/Cas9 in lipid metabolism studies are mentioned.
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Affiliation(s)
- Mid-Eum Park
- Department of Molecular Biology, Sejong University, Seoul, South Korea
| | - Hyun Uk Kim
- Department of Molecular Biology, Sejong University, Seoul, South Korea
- Department of Bioindustry and Bioresource Engineering, Plant Engineering Research Institute, Sejong University, Seoul, South Korea
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9
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Chen G, Harwood JL, Lemieux MJ, Stone SJ, Weselake RJ. Acyl-CoA:diacylglycerol acyltransferase: Properties, physiological roles, metabolic engineering and intentional control. Prog Lipid Res 2022; 88:101181. [PMID: 35820474 DOI: 10.1016/j.plipres.2022.101181] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 05/31/2022] [Accepted: 07/04/2022] [Indexed: 12/15/2022]
Abstract
Acyl-CoA:diacylglycerol acyltransferase (DGAT, EC 2.3.1.20) catalyzes the last reaction in the acyl-CoA-dependent biosynthesis of triacylglycerol (TAG). DGAT activity resides mainly in membrane-bound DGAT1 and DGAT2 in eukaryotes and bifunctional wax ester synthase-diacylglycerol acyltransferase (WSD) in bacteria, which are all membrane-bound proteins but exhibit no sequence homology to each other. Recent studies also identified other DGAT enzymes such as the soluble DGAT3 and diacylglycerol acetyltransferase (EaDAcT), as well as enzymes with DGAT activities including defective in cuticular ridges (DCR) and steryl and phytyl ester synthases (PESs). This review comprehensively discusses research advances on DGATs in prokaryotes and eukaryotes with a focus on their biochemical properties, physiological roles, and biotechnological and therapeutic applications. The review begins with a discussion of DGAT assay methods, followed by a systematic discussion of TAG biosynthesis and the properties and physiological role of DGATs. Thereafter, the review discusses the three-dimensional structure and insights into mechanism of action of human DGAT1, and the modeled DGAT1 from Brassica napus. The review then examines metabolic engineering strategies involving manipulation of DGAT, followed by a discussion of its therapeutic applications. DGAT in relation to improvement of livestock traits is also discussed along with DGATs in various other eukaryotic organisms.
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Affiliation(s)
- Guanqun Chen
- Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta T6H 2P5, Canada.
| | - John L Harwood
- School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK
| | - M Joanne Lemieux
- Department of Biochemistry, University of Alberta, Membrane Protein Disease Research Group, Edmonton T6G 2H7, Canada
| | - Scot J Stone
- Department of Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E5, Canada.
| | - Randall J Weselake
- Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta T6H 2P5, Canada
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Coprocessing Corn Germ Meal for Oil Recovery and Ethanol Production: A Process Model for Lipid-Producing Energy Crops. Processes (Basel) 2022. [DOI: 10.3390/pr10040661] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Efforts to engineer high-productivity crops to accumulate oils in their vegetative tissue present the possibility of expanding biodiesel production. However, processing the new crops for lipid recovery and ethanol production from cell wall saccharides is challenging and expensive. In a previous study using corn germ meal as a model substrate, we reported that liquid hot water (LHW) pretreatment enriched the lipid concentration by 2.2 to 4.2 fold. This study investigated combining oil recovery with ethanol production by extracting oil following LHW and simultaneous saccharification and co-fermentation (SSCF) of the biomass. Corn germ meal was again used to model the oil-bearing energy crops. Pretreated germ meal hydrolysate or solids (160 and 180 °C for 10 min) were fermented, and lipids were extracted from both the spent fermentation whole broth and fermentation solids, which were recovered by centrifugation and convective drying. Lipid contents in spent fermentation solids increased 3.7 to 5.7 fold compared to the beginning germ meal. The highest lipid yield achieved after fermentation was 36.0 mg lipid g−1 raw biomass; the maximum relative amount of triacylglycerol (TAG) was 50.9% of extracted oil. Although the fermentation step increased the lipid concentration of the recovered solids, it did not improve the lipid yields of pretreated biomass and detrimentally affected oil compositions by increasing the relative concentrations of free fatty acids.
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11
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Medina-Lozano I, Díaz A. Applications of Genomic Tools in Plant Breeding: Crop Biofortification. Int J Mol Sci 2022; 23:3086. [PMID: 35328507 PMCID: PMC8950180 DOI: 10.3390/ijms23063086] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 03/04/2022] [Accepted: 03/10/2022] [Indexed: 12/02/2022] Open
Abstract
Crop breeding has mainly been focused on increasing productivity, either directly or by decreasing the losses caused by biotic and abiotic stresses (that is, incorporating resistance to diseases and enhancing tolerance to adverse conditions, respectively). Quite the opposite, little attention has been paid to improve the nutritional value of crops. It has not been until recently that crop biofortification has become an objective within breeding programs, through either conventional methods or genetic engineering. There are many steps along this long path, from the initial evaluation of germplasm for the content of nutrients and health-promoting compounds to the development of biofortified varieties, with the available and future genomic tools assisting scientists and breeders in reaching their objectives as well as speeding up the process. This review offers a compendium of the genomic technologies used to explore and create biodiversity, to associate the traits of interest to the genome, and to transfer the genomic regions responsible for the desirable characteristics into potential new varieties. Finally, a glimpse of future perspectives and challenges in this emerging area is offered by taking the present scenario and the slow progress of the regulatory framework as the starting point.
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Affiliation(s)
- Inés Medina-Lozano
- Departamento de Ciencia Vegetal, Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Universidad de Zaragoza, Avda. Montañana 930, 50059 Zaragoza, Spain;
- Instituto Agroalimentario de Aragón—IA2, Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Universidad de Zaragoza, 50013 Zaragoza, Spain
| | - Aurora Díaz
- Departamento de Ciencia Vegetal, Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Universidad de Zaragoza, Avda. Montañana 930, 50059 Zaragoza, Spain;
- Instituto Agroalimentario de Aragón—IA2, Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Universidad de Zaragoza, 50013 Zaragoza, Spain
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12
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Muthukrishnan L. Bio‐engineering of microalgae: Challenges and future prospects toward industrial and environmental applications. J Basic Microbiol 2022; 62:310-329. [DOI: 10.1002/jobm.202100417] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 12/28/2021] [Accepted: 01/08/2022] [Indexed: 01/29/2023]
Affiliation(s)
- Lakshmipathy Muthukrishnan
- Department of Conservative Dentistry and Endodontics, Saveetha Dental College and Hospitals Saveetha Institute of Medical and Technical Sciences Chennai Tamil Nadu India
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13
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Yu R, Wu X, Liu J, Howitt CA, Bird AR, Liu CM, Larkin PJ. Rice with Multilayer Aleurone: A Larger Sink for Multiple Micronutrients. RICE (NEW YORK, N.Y.) 2021; 14:102. [PMID: 34902082 PMCID: PMC8669085 DOI: 10.1186/s12284-021-00543-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 11/29/2021] [Indexed: 05/05/2023]
Abstract
Diet-related noncommunicable diseases impose a heavy burden on human health worldwide. Rice is a good target for diet-related disease prevention strategies because it is widely consumed. Liu et al. (Proc Natl Acad Sci USA 115(44):11327-11332, 2018. https://doi.org/10.1073/pnas.1806304115 ) demonstrated that increasing the number of cell layers and thickness of putative aleurone in ta2-1 (thick aleurone 2-1) mutant rice enhances simultaneously the content of multiple micronutrients. However, the increases of aleurone-associated nutrients were not proportional to the increases in the aleurone thickness. In this study, first, cytohistological analyses and transmission electron microscopy demonstrated that the multilayer in ta2-1 exhibited aleurone cell structural features. Second, we detected an increase in insoluble fibre and insoluble bound-phenolic compounds, a shift in aleurone-specific neutral non-starch polysaccharide profile, enhancement of phytate and minerals such as iron, zinc, potassium, magnesium, sulphur, and manganese, enrichment of triacylglycerol and phosphatidylcholine but slight reduction in free fatty acid, and an increase in oleic fatty acid composition. These findings support our hypothesis that the expanded aleurone-like layers in ta2-1 maintained some of the distinctive aleurone features and composition. We provide perspectives to achieve even greater filling of this expanded micronutrient sink to provide a means for multiple micronutrient enhancements in rice.
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Affiliation(s)
- Ronald Yu
- CSIRO Agriculture, GPO Box 1600, CSIRO, Building 801, CSIRO Black Mountain, Clunies Ross Street, Canberra, ACT 2601 Australia
| | - Xiaoba Wu
- CSIRO Agriculture, GPO Box 1600, CSIRO, Building 801, CSIRO Black Mountain, Clunies Ross Street, Canberra, ACT 2601 Australia
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Jinxin Liu
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Crispin A. Howitt
- CSIRO Agriculture, GPO Box 1600, CSIRO, Building 801, CSIRO Black Mountain, Clunies Ross Street, Canberra, ACT 2601 Australia
| | - Anthony R. Bird
- CSIRO Health and Biosecurity, PO Box 10041, Adelaide, SA 5000 Australia
| | - Chun-Ming Liu
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Philip J. Larkin
- CSIRO Agriculture, GPO Box 1600, CSIRO, Building 801, CSIRO Black Mountain, Clunies Ross Street, Canberra, ACT 2601 Australia
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14
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Bose U, Juhász A, Yu R, Bahmani M, Byrne K, Blundell M, Broadbent JA, Howitt CA, Colgrave ML. Proteome and Nutritional Shifts Observed in Hordein Double-Mutant Barley Lines. FRONTIERS IN PLANT SCIENCE 2021; 12:718504. [PMID: 34567030 PMCID: PMC8458801 DOI: 10.3389/fpls.2021.718504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/09/2021] [Indexed: 06/13/2023]
Abstract
Lysine is the most limiting essential amino acid in cereals, and efforts have been made over the decades to improve the nutritional quality of these grains by limiting storage protein accumulation and increasing lysine content, while maintaining desired agronomic traits. The single lys3 mutation in barley has been shown to significantly increase lysine content but also reduces grain size. Herein, the regulatory effect of the lys3 mutation that controls storage protein accumulation as well as a plethora of critically important processes in cereal seeds was investigated in double mutant barley lines. This was enabled through the generation of three hordein double-mutants by inter-crossing three single hordein mutants, that had all been backcrossed three times to the malting barley cultivar Sloop. Proteome abundance measurements were integrated with their phenotype measurements; proteins were mapped to chromosomal locations and to their corresponding functional classes. These models enabled the prediction of previously unknown points of crosstalk that connect the impact of lys3 mutations to other signalling pathways. In combination, these results provide an improved understanding of how the mutation at the lys3 locus remodels cellular functions and impact phenotype that can be used in selective breeding to generate favourable agronomic traits.
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Affiliation(s)
- Utpal Bose
- CSIRO Agriculture and Food, St Lucia, QLD, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia
| | - Angéla Juhász
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia
| | - Ronald Yu
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Mahya Bahmani
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia
| | - Keren Byrne
- CSIRO Agriculture and Food, St Lucia, QLD, Australia
| | | | | | | | - Michelle L. Colgrave
- CSIRO Agriculture and Food, St Lucia, QLD, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, School of Science, Edith Cowan University, Joondalup, WA, Australia
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15
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Yee S, Rolland V, Reynolds KB, Shrestha P, Ma L, Singh SP, Vanhercke T, Petrie JR, El Tahchy A. Sesamum indicum Oleosin L improves oil packaging in Nicotiana benthamiana leaves. PLANT DIRECT 2021; 5:e343. [PMID: 34514289 PMCID: PMC8421512 DOI: 10.1002/pld3.343] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 12/03/2020] [Accepted: 08/09/2021] [Indexed: 05/27/2023]
Abstract
Plant oil production has been increasing continuously in the past decade. There has been significant investment in the production of high biomass plants with elevated oil content. We recently showed that the expression of Arabidopsis thaliana WRI1 and DGAT1 genes increase oil content by up to 15% in leaf dry weight tissue. However, triacylglycerols in leaf tissue are subject to degradation during senescence. In order to better package the oil, we expressed a series of lipid droplet proteins isolated from bacterial and plant sources in Nicotiana benthamiana leaf tissue. We observed further increases in leaf oil content of up to 2.3-fold when we co-expressed Sesamum indicum Oleosin L with AtWRI1 and AtDGAT1. Biochemical assays and lipid droplet visualization with confocal microscopy confirmed the increase in oil content and revealed a significant change in the size and abundance of lipid droplets.
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Affiliation(s)
- Suyan Yee
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
- Research School of BiologyThe Australian National UniversityCanberraACTAustralia
| | - Vivien Rolland
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Kyle B. Reynolds
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Pushkar Shrestha
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Lina Ma
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Surinder P. Singh
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Thomas Vanhercke
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - James R. Petrie
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
| | - Anna El Tahchy
- Commonwealth Scientific and Industrial Research Organisation, Agriculture and FoodActonACTAustralia
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16
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Transgenic wheat with increased endosperm lipid – Impacts on grain composition and baking quality. J Cereal Sci 2021. [DOI: 10.1016/j.jcs.2021.103289] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Larkin P, Zhou X, Liu Q, Reynolds K, Vanhercke T, Ral J, Li Z, Wu X, Yu R, Luo J, Newberry M, Howitt C. A transcriptional journey from sucrose to endosperm oil bodies in triple transgene oily wheat grain. J Cereal Sci 2021. [DOI: 10.1016/j.jcs.2021.103268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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18
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Kordyum E, Hasenstein KH. Plant biology for space exploration - Building on the past, preparing for the future. LIFE SCIENCES IN SPACE RESEARCH 2021; 29:1-7. [PMID: 33888282 DOI: 10.1016/j.lssr.2021.01.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 01/05/2021] [Accepted: 01/16/2021] [Indexed: 06/12/2023]
Abstract
A review of past insights of space experiments with plants outlines basic space and gravity effects as well as gene expression. Efforts to grow plants in space gradually incorporated basic question on plant productivity, stress response and cultivation. The prospect of extended space missions as well as colonization of the Moon and Mars require better understanding and therefore research efforts on biomass productivity, substrate and water relations, atmospheric composition, pressure and temperature and substrate and volume (growth space) requirements. The essential combination of using plants not only for food production but also for regeneration of waste, and recycling of carbon and oxygen production requires integration of complex biological and engineering aspects. We combine a historical account of plant space research with considerations for future research on plant cultivation, selection, and productivity based on space-related environmental conditions.
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Affiliation(s)
- Elizabeth Kordyum
- Department of Cell Biology and Anatomy, Institute of Botany NASU, Tereschenkivska Str. 2, 01601 Kiev, Ukraine, United States
| | - Karl H Hasenstein
- Biology Department, University of Louisiana at Lafayette, Lafayette, LA, 70504-3602, United States.
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19
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Lal MK, Singh B, Sharma S, Singh MP, Kumar A. Glycemic index of starchy crops and factors affecting its digestibility: A review. Trends Food Sci Technol 2021. [DOI: 10.1016/j.tifs.2021.02.067] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Overexpression of Type 1 and 2 Diacylglycerol Acyltransferase Genes ( JcDGAT1 and JcDGAT2) Enhances Oil Production in the Woody Perennial Biofuel Plant Jatropha curcas. PLANTS 2021; 10:plants10040699. [PMID: 33916393 PMCID: PMC8066779 DOI: 10.3390/plants10040699] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 03/29/2021] [Accepted: 04/02/2021] [Indexed: 12/19/2022]
Abstract
Diacylglycerol acyltransferase (DGAT) is the only enzyme that catalyzes the acyl-CoA-dependent acylation of sn-1, 2-diacylglycerol (DAG) to form triacylglycerol (TAG). The two main types of DGAT enzymes in the woody perennial biofuel plant Jatropha curcas, JcDGAT1 and JcDGAT2, were previously characterized only in heterologous systems. In this study, we investigated the functions of JcDGAT1 and JcDGAT2 in J. curcas.JcDGAT1 and JcDGAT2 were found to be predominantly expressed during the late stages of J. curcas seed development, in which large amounts of oil accumulated. As expected, overexpression of JcDGAT1 or JcDGAT2 under the control of the CaMV35S promoter gave rise to an increase in seed kernel oil production, reaching a content of 53.7% and 55.7% of the seed kernel dry weight, respectively, which were respectively 25% and 29.6% higher than that of control plants. The increase in seed oil content was accompanied by decreases in the contents of protein and soluble sugars in the seeds. Simultaneously, there was a two- to four-fold higher leaf TAG content in transgenic plants than in control plants. Moreover, by analysis of the fatty acid (FA) profiles, we found that JcDGAT1 and JcDGAT2 had the same substrate specificity with preferences for C18:2 in seed TAGs, and C16:0, C18:0, and C18:1 in leaf TAGs. Therefore, our study confirms the important role of JcDGAT1 and JcDGAT2 in regulating oil production in J. curcas.
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21
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Gao Y, Sun Y, Gao H, Chen Y, Wang X, Xue J, Jia X, Li R. Ectopic overexpression of a type-II DGAT (CeDGAT2-2) derived from oil-rich tuber of Cyperus esculentus enhances accumulation of oil and oleic acid in tobacco leaves. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:76. [PMID: 33757551 PMCID: PMC7986309 DOI: 10.1186/s13068-021-01928-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2020] [Accepted: 03/12/2021] [Indexed: 05/02/2023]
Abstract
BACKGROUND Engineering triacylglycerol (TAG) accumulation in vegetative tissues of non-food crops has become a promising way to meet our increasing demand for plant oils, especially the renewable production of biofuels. The most important target modified in this regard is diacylglycerol acyltransferase (DGAT) enzyme responsible for the final rate-limiting step in TAG biosynthesis. Cyperus esculentus is a unique plant largely accumulating oleic acid-enriched oil in its underground tubers. We speculated that DGAT derived from such oil-rich tubers could function more efficiently than that from oleaginous seeds in enhancing oil storage in vegetative tissues of tobacco, a high-yielding biomass crops. RESULTS Three CeDGAT genes namely CeDGAT1, CeDGAT2-1 and CeDGAT2-2 were identified in C. esculentus by mining transcriptome of developing tubers. These CeDGATs were expressed in tissues tested, with CeDGAT1 highly in roots, CeDGAT2-1 abundantly in leaves, and CeDGAT2-2 predominantly in tubers. Notably, CeDGAT2-2 expression pattern was in accordance with oil dynamic accumulation during tuber development. Overexpression of CeDGAT2-2 functionally restored TAG biosynthesis in TAG-deficient yeast mutant H1246. Oleic acid level was significantly increased in CeDGAT2-2 transgenic yeast compared to the wild-type yeast and ScDGA1-expressed control under culture with and without feeding of exogenous fatty acids. Overexpressing CeDGAT2-2 in tobacco led to dramatic enhancements of leafy oil by 7.15- and 1.7-fold more compared to the wild-type control and plants expressing Arabidopsis seed-derived AtDGAT1. A substantial change in fatty acid composition was detected in leaves, with increase of oleic acid from 5.1% in the wild type to 31.33% in CeDGAT2-2-expressed tobacco and accompanied reduction of saturated fatty acids. Moreover, the elevated accumulation of oleic acid-enriched TAG in transgenic tobacco exhibited no significantly negative impact on other agronomic traits such as photosynthesis, growth rates and seed germination except for small decline of starch content. CONCLUSIONS The present data indicate that CeDGAT2-2 has a high enzyme activity to catalyze formation of TAG and a strong specificity for oleic acid-containing substrates, providing new insights into understanding oil biosynthesis mechanism in plant vegetative tissues. Overexpression of CeDGAT2-2 alone can significantly increase oleic acid-enriched oil accumulation in tobacco leaves without negative impact on other agronomy traits, showing CeDGAT2-2 as the desirable target gene in metabolic engineering to enrich oil and value-added lipids in high-biomass plants for commercial production of biofuel oils.
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Affiliation(s)
- Yu Gao
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Yan Sun
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Huiling Gao
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Ying Chen
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Xiaoqing Wang
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Jinai Xue
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China
| | - Xiaoyun Jia
- College of Life Sciences, Shanxi Agricultural University, Taigu, 030801, Shanxi, China.
| | - Runzhi Li
- College of Agriculture, Institute of Molecular Agriculture and Bioenergy, Shanxi Agricultural University, Taigu, 030801, Shanxi, China.
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22
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Recoveries of Oil and Hydrolyzed Sugars from Corn Germ Meal by Hydrothermal Pretreatment: A Model Feedstock for Lipid-Producing Energy Crops. ENERGIES 2020. [DOI: 10.3390/en13226022] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Vegetable oil is extracted from oil rich seeds, such as soybeans. Genetic engineering of green plants to accumulate oil in vegetative tissue is a future source of oil that promises increased land productivity and the use of marginal lands. However, the low concentration of lipids in current engineered plant biomass samples makes the oil extraction process challenging and expensive. In this study, liquid hot water (LHW) pretreatment was investigated to enhance oil recovery from the solids and increase enzymatic hydrolysis efficiency of such feedstocks. Corn germ meal was chosen as a model feedstock representing lipid-producing energy crops. Germ meal was pretreated at 160 and 180 °C for 10 and 15 min at 20% w/w solids loading. Enzymatic hydrolysis on the pretreated solid was performed. After pretreatment, the oil concentration increased by 2.2 to 4.2 fold. The most severe pretreatment condition of LHW, at 180 °C for 15 min, gave the maximum oil concentration (9.7%, w/w), the highest triacylglycerol (TAG) content of the extracted oil (71.6%), and the highest conversions of glucose and xylose (99.0% and 32.8%, respectively). This study demonstrates that the optimal pretreatment condition for corn germ meal is 180 °C LHW for 15 min. Pretreatment improves lipids recovery from oil bearing biomass with little or no effect on the lipid profile.
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23
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Miroshnichenko D, Firsov A, Timerbaev V, Kozlov O, Klementyeva A, Shaloiko L, Dolgov S. Evaluation of Plant-Derived Promoters for Constitutive and Tissue-Specific Gene Expression in Potato. PLANTS 2020; 9:plants9111520. [PMID: 33182387 PMCID: PMC7696379 DOI: 10.3390/plants9111520] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Revised: 11/05/2020] [Accepted: 11/06/2020] [Indexed: 01/22/2023]
Abstract
Various plant-derived promoters can be used to regulate ectopic gene expression in potato. In the present study, four promoters derived from the potato genome have been characterized by the expression of identical cassettes carrying the fusion with the reporter β-glucuronidase (gusA) gene. The strengths of StUbi, StGBSS, StPat, and StLhca3 promoters were compared with the conventional constitutive CaMV 35S promoter in various organs (leaves, stems, roots, and tubers) of greenhouse-grown plants. The final amount of gene product was determined at the post-transcriptional level using histochemical analysis, fluorometric measurements, and Western blot analysis. The promoter strength comparison demonstrated that the StUbi promoter generally provided a higher level of constitutive β-glucuronidase accumulation than the viral CaMV 35S promoter. Although the StLhca3 promoter was predominantly expressed in a green tissue-specific manner (leaves and stems) while StGBSS and StPat mainly provided tuber-specific activity, a “promoter leakage” was also found. However, the degree of unspecific activity depended on the particular transgenic line and tissue. According to fluorometric data, the functional activity of promoters in leaves could be arranged as follows: StLhca3 > StUbi > CaMV 35S > StPat > StGBSS (from highest to lowest). In tubers, the higher expression was detected in transgenic plants expressing StPat-gusA fusion construct, and the strength order was as follows: StPat > StGBSS > StUbi > CaMV 35S > StLhca3. The observed differences between expression patterns are discussed considering the benefits and limitations for the usage of each promoter to regulate the expression of genes in a particular potato tissue.
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Affiliation(s)
- Dmitry Miroshnichenko
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya Street 42, 127550 Moscow, Russia
- Correspondence:
| | - Aleksey Firsov
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya Street 42, 127550 Moscow, Russia
| | - Vadim Timerbaev
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya Street 42, 127550 Moscow, Russia
| | - Oleg Kozlov
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
| | - Anna Klementyeva
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya Street 42, 127550 Moscow, Russia
| | - Lyubov Shaloiko
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
| | - Sergey Dolgov
- Branch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, 142290 Pushchino, Russia; (A.F.); (V.T.); (O.K.); (A.K.); (L.S.); (S.D.)
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya Street 42, 127550 Moscow, Russia
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24
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Ortiz R, Geleta M, Gustafsson C, Lager I, Hofvander P, Löfstedt C, Cahoon EB, Minina E, Bozhkov P, Stymne S. Oil crops for the future. CURRENT OPINION IN PLANT BIOLOGY 2020; 56:181-189. [PMID: 31982290 DOI: 10.1016/j.pbi.2019.12.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2019] [Revised: 11/28/2019] [Accepted: 12/03/2019] [Indexed: 05/12/2023]
Abstract
Agriculture faces enormous challenges including the need to substantially increase productivity, reduce environmental footprint, and deliver renewable alternatives that are being addressed by developing new oil crops for the future. The efforts include domestication of Lepidium spp. using genomics-aided breeding as a cold hardy perennial high-yielding oil crop that provides substantial environmental benefits, expands the geography for oil crops, and improves farmers' economy. In addition, genetic engineering in Crambe abyssinica may lead to a dedicated industrial oil crop to replace fossil oil. Redirection of photosynthates from starch to oil in plant tubers and cereal endosperm also provides a path for enhancing oil production to meet the growing demands for food, fuel, and biomaterials. Insect pheromone components are produced in seed oil plants in a cost-effective and environmentally friendly pest management replacing synthetically produced pheromones. Autophagy is explored for increasing crop fitness and oil accumulation using genetic engineering in Arabidopsis.
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Affiliation(s)
- Rodomiro Ortiz
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden.
| | - Mulatu Geleta
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden
| | - Cecilia Gustafsson
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden
| | - Ida Lager
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden
| | - Per Hofvander
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden
| | | | | | - Elena Minina
- Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden
| | - Peter Bozhkov
- Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden
| | - Sten Stymne
- Swedish University of Agricultural Sciences (SLU), Department of Plant Breeding, Alnarp, Sweden
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25
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Correa SM, Fernie AR, Nikoloski Z, Brotman Y. Towards model-driven characterization and manipulation of plant lipid metabolism. Prog Lipid Res 2020; 80:101051. [PMID: 32640289 DOI: 10.1016/j.plipres.2020.101051] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 06/20/2020] [Accepted: 06/21/2020] [Indexed: 01/09/2023]
Abstract
Plant lipids have versatile applications and provide essential fatty acids in human diet. Therefore, there has been a growing interest to better characterize the genetic basis, regulatory networks, and metabolic pathways that shape lipid quantity and composition. Addressing these issues is challenging due to context-specificity of lipid metabolism integrating environmental, developmental, and tissue-specific cues. Here we systematically review the known metabolic pathways and regulatory interactions that modulate the levels of storage lipids in oilseeds. We argue that the current understanding of lipid metabolism provides the basis for its study in the context of genome-wide plant metabolic networks with the help of approaches from constraint-based modeling and metabolic flux analysis. The focus is on providing a comprehensive summary of the state-of-the-art of modeling plant lipid metabolic pathways, which we then contrast with the existing modeling efforts in yeast and microalgae. We then point out the gaps in knowledge of lipid metabolism, and enumerate the recent advances of using genome-wide association and quantitative trait loci mapping studies to unravel the genetic regulations of lipid metabolism. Finally, we offer a perspective on how advances in the constraint-based modeling framework can propel further characterization of plant lipid metabolism and its rational manipulation.
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Affiliation(s)
- Sandra M Correa
- Genetics of Metabolic Traits Group, Max Planck Institute for Molecular Plant Physiology, Potsdam 14476, Germany; Department of Life Sciences, Ben-Gurion University of the Negev, 8410501 Beer-Sheva, Israel; Departamento de Ciencias Exactas y Naturales, Universidad de Antioquia, Medellín 050010, Colombia.
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute for Molecular Plant Physiology, Potsdam 14476, Germany; Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria
| | - Zoran Nikoloski
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria; Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany; Systems Biology and Mathematical Modelling Group, Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm 14476, Germany.
| | - Yariv Brotman
- Genetics of Metabolic Traits Group, Max Planck Institute for Molecular Plant Physiology, Potsdam 14476, Germany; Department of Life Sciences, Ben-Gurion University of the Negev, 8410501 Beer-Sheva, Israel
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26
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Rolletschek H, Schwender J, König C, Chapman KD, Romsdahl T, Lorenz C, Braun HP, Denolf P, Van Audenhove K, Munz E, Heinzel N, Ortleb S, Rutten T, McCorkle S, Borysyuk T, Guendel A, Shi H, Vander Auwermeulen M, Bourot S, Borisjuk L. Cellular Plasticity in Response to Suppression of Storage Proteins in the Brassica napus Embryo. THE PLANT CELL 2020; 32:2383-2401. [PMID: 32358071 PMCID: PMC7346569 DOI: 10.1105/tpc.19.00879] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 04/15/2020] [Accepted: 04/30/2020] [Indexed: 05/16/2023]
Abstract
The tradeoff between protein and oil storage in oilseed crops has been tested here in oilseed rape (Brassica napus) by analyzing the effect of suppressing key genes encoding protein storage products (napin and cruciferin). The phenotypic outcomes were assessed using NMR and mass spectrometry imaging, microscopy, transcriptomics, proteomics, metabolomics, lipidomics, immunological assays, and flux balance analysis. Surprisingly, the profile of storage products was only moderately changed in RNA interference transgenics. However, embryonic cells had undergone remarkable architectural rearrangements. The suppression of storage proteins led to the elaboration of membrane stacks enriched with oleosin (sixfold higher protein abundance) and novel endoplasmic reticulum morphology. Protein rebalancing and amino acid metabolism were focal points of the metabolic adjustments to maintain embryonic carbon/nitrogen homeostasis. Flux balance analysis indicated a rather minor additional demand for cofactors (ATP and NADPH). Thus, cellular plasticity in seeds protects against perturbations to its storage capabilities and, hence, contributes materially to homeostasis. This study provides mechanistic insights into the intriguing link between lipid and protein storage, which have implications for biotechnological strategies directed at improving oilseed crops.
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Affiliation(s)
- Hardy Rolletschek
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Jörg Schwender
- Biology Department, Brookhaven National Laboratory, Upton, New York 11973
| | - Christina König
- Biology Department, Brookhaven National Laboratory, Upton, New York 11973
| | - Kent D Chapman
- University of North Texas, BioDiscovery Institute, Department of Biological Sciences, Denton, Texas 76203
| | - Trevor Romsdahl
- University of North Texas, BioDiscovery Institute, Department of Biological Sciences, Denton, Texas 76203
| | - Christin Lorenz
- Institut für Pflanzengenetik, Universität Hannover, 30419 Hannover, Germany
| | - Hans-Peter Braun
- Institut für Pflanzengenetik, Universität Hannover, 30419 Hannover, Germany
| | - Peter Denolf
- BASF Innovation Center Ghent, 9052-Zwijnaarde, Belgium
| | | | - Eberhard Munz
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Nicolas Heinzel
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Stefan Ortleb
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Twan Rutten
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Sean McCorkle
- Biology Department, Brookhaven National Laboratory, Upton, New York 11973
| | | | - André Guendel
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
| | - Hai Shi
- Biology Department, Brookhaven National Laboratory, Upton, New York 11973
| | | | | | - Ljudmilla Borisjuk
- Leibniz Institute of Plant Genetics and Crop Plant Research OT Gatersleben, D-06466 Seeland, Germany
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27
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Xu XY, Akbar S, Shrestha P, Venugoban L, Devilla R, Hussain D, Lee J, Rug M, Tian L, Vanhercke T, Singh SP, Li Z, Sharp PJ, Liu Q. A Synergistic Genetic Engineering Strategy Induced Triacylglycerol Accumulation in Potato ( Solanum tuberosum) Leaf. FRONTIERS IN PLANT SCIENCE 2020; 11:215. [PMID: 32210994 PMCID: PMC7069356 DOI: 10.3389/fpls.2020.00215] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 02/12/2020] [Indexed: 05/23/2023]
Abstract
Potato is the 4th largest staple food in the world currently. As a high biomass crop, potato harbors excellent potential to produce energy-rich compounds such as triacylglycerol as a valuable co-product. We have previously reported that transgenic potato tubers overexpressing WRINKLED1, DIACYLGLYCEROL ACYLTRANSFERASE 1, and OLEOSIN genes produced considerable levels of triacylglycerol. In this study, the same genetic engineering strategy was employed on potato leaves. The overexpression of Arabidopsis thaliana WRINKED1 under the transcriptional control of a senescence-inducible promoter together with Arabidopsis thaliana DIACYLGLYCEROL ACYLTRANSFERASE 1 and Sesamum indicum OLEOSIN driven by the Cauliflower Mosaic Virus 35S promoter and small subunit of Rubisco promoter respectively, resulted in an approximately 30- fold enhancement of triacylglycerols in the senescent transgenic potato leaves compared to the wild type. The increase of triacylglycerol in the transgenic potato leaves was accompanied by perturbations of carbohydrate accumulation, apparent in a reduction in starch content and increased total soluble sugars, as well as changes of polar membrane lipids at different developmental stages. Microscopic and biochemical analysis further indicated that triacylglycerols and lipid droplets could not be produced in chloroplasts, despite the increase and enlargement of plastoglobuli at the senescent stage. Possibly enhanced accumulation of fatty acid phytyl esters in the plastoglobuli were reflected in transgenic potato leaves relative to wild type. It is likely that the plastoglobuli may have hijacked some of the carbon as the result of WRINKED1 expression, which could be a potential factor restricting the effective accumulation of triacylglycerols in potato leaves. Increased lipid production was also observed in potato tubers, which may have affected the tuberization to a certain extent. The expression of transgenes in potato leaf not only altered the carbon partitioning in the photosynthetic source tissue, but also the underground sink organs which highly relies on the leaves in development and energy deposition.
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Affiliation(s)
- Xiao-yu Xu
- CSIRO Agriculture and Food, Canberra, ACT, Australia
- Plant Breeding Institute and Sydney Institute of Agriculture, School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW, Australia
| | - Sehrish Akbar
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| | | | | | | | - Dawar Hussain
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Jiwon Lee
- Center for Advanced Microscopy, The Australian National University, Canberra, ACT, Australia
| | - Melanie Rug
- Center for Advanced Microscopy, The Australian National University, Canberra, ACT, Australia
| | - Lijun Tian
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| | | | | | - Zhongyi Li
- CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Peter J. Sharp
- Plant Breeding Institute and Sydney Institute of Agriculture, School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW, Australia
| | - Qing Liu
- CSIRO Agriculture and Food, Canberra, ACT, Australia
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28
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The Correlation between Soil Nutrient and Potato Quality in Loess Plateau of China Based on PLSR. SUSTAINABILITY 2020. [DOI: 10.3390/su12041588] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Potato tuber quality is influenced by the interaction of soil nutrients. Hence, simple correlation analysis cannot accurately reflect the true relationship between soil nutrients and potato tuber quality. In this study, potato tuber quality and soil nutrient content were used as research materials in the Loess Plateau of China. The partial least square regression (PLSR) method was used to establish the regression equation between potato quality and soil nutrient. The major soil nutrient indexes influencing potato quality were screened out to provide theoretical basis for potato field management. The results showed that the major soil nutrient factors influencing the potato tuber quality in Loess Plateau were soil ammonium nitrogen, soil nitrate nitrogen, soil available phosphorus, pH, and soil available potassium. Soil pH value is the most important factor affecting potato starch, reducing sugar content, and soluble protein content. Soil nitrate nitrogen is one of the important factors affecting potato tuber soluble total sugar content, vitamin C, browning intensity, and polyphenol oxidase activity. Soil ammonium nitrogen was positively correlated with the total soluble sugar content of potato tubers, and negatively correlated with reducing sugar content, browning intensity, and polyphenol oxidase activity. However, soil available potassium has positive effects on potato starch and reducing sugar content, and negative effects on soluble protein and browning strength. Results of this study indicates that the major soil nutrient factors influencing potato tuber quality were soil nitrate nitrogen and soil pH value.
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29
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Woodfield HK, Fenyk S, Wallington E, Bates RE, Brown A, Guschina IA, Marillia E, Taylor DC, Fell D, Harwood JL, Fawcett T. Increase in lysophosphatidate acyltransferase activity in oilseed rape (Brassica napus) increases seed triacylglycerol content despite its low intrinsic flux control coefficient. THE NEW PHYTOLOGIST 2019; 224:700-711. [PMID: 31400160 PMCID: PMC6790676 DOI: 10.1111/nph.16100] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 07/23/2019] [Indexed: 05/06/2023]
Abstract
Lysophosphatidate acyltransferase (LPAAT) catalyses the second step of the Kennedy pathway for triacylglycerol (TAG) synthesis. In this study we expressed Trapaeolum majus LPAAT in Brassica napus (B. napus) cv 12075 to evaluate the effects on lipid synthesis and estimate the flux control coefficient for LPAAT. We estimated the flux control coefficient of LPAAT in a whole plant context by deriving a relationship between it and overall lipid accumulation, given that this process is a exponential. Increasing LPAAT activity resulted in greater TAG accumulation in seeds of between 25% and 29%; altered fatty acid distributions in seed lipids (particularly those of the Kennedy pathway); and a redistribution of label from 14 C-glycerol between phosphoglycerides. Greater LPAAT activity in seeds led to an increase in TAG content despite its low intrinsic flux control coefficient on account of the exponential nature of lipid accumulation that amplifies the effect of the small flux increment achieved by increasing its activity. We have also developed a novel application of metabolic control analysis likely to have broad application as it determines the in planta flux control that a single component has upon accumulation of storage products.
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Affiliation(s)
| | - Stepan Fenyk
- Department of BiosciencesDurham UniversityDurhamDH1 3LEUK
| | - Emma Wallington
- The John Bingham LaboratoryNIABHuntingdon RoadCambridgeCB3 0LEUK
| | - Ruth E. Bates
- The John Bingham LaboratoryNIABHuntingdon RoadCambridgeCB3 0LEUK
| | | | | | | | - David C. Taylor
- National Research Council of Canada110 Gymnasium PlaceSaskatoonSKS79 0W9Canada
| | - David Fell
- Department of Biological and Medical SciencesOxford Brookes UniversityOxfordOX3 0BPUK
| | | | - Tony Fawcett
- Department of BiosciencesDurham UniversityDurhamDH1 3LEUK
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30
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Yu Q, Barkan A, Maliga P. Engineered RNA-binding protein for transgene activation in non-green plastids. NATURE PLANTS 2019; 5:486-490. [PMID: 31036913 DOI: 10.1038/s41477-019-0413-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 03/22/2019] [Indexed: 06/09/2023]
Abstract
Non-green plastids are desirable for the expression of recombinant proteins in edible plant parts to enhance the nutritional value of tubers or fruits, or to deliver pharmaceuticals. However, plastid transgenes are expressed at extremely low levels in the amyloplasts of storage organs such as tubers1-3. Here, we report a regulatory system comprising a variant of the maize RNA-binding protein PPR10 and a cognate binding site upstream of a plastid transgene that encodes green fluorescent protein (GFP). The binding site is not recognized by the resident potato PPR10 protein, restricting GFP protein accumulation to low levels in leaves. When the PPR10 variant is expressed from the tuber-specific patatin promoter, GFP accumulates up to 1.3% of the total soluble protein, a 60-fold increase compared with previous studies2 (0.02%). This regulatory system enables an increase in transgene expression in non-photosynthetic plastids without interfering with chloroplast gene expression in leaves.
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Affiliation(s)
- Qiguo Yu
- Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, USA
| | - Alice Barkan
- Institute of Molecular Biology, University of Oregon, Eugene, OR, USA
| | - Pal Maliga
- Waksman Institute of Microbiology, Rutgers University, Piscataway, NJ, USA.
- Department of Plant Biology, Rutgers University, New Brunswick, NJ, USA.
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31
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Vanhercke T, Dyer JM, Mullen RT, Kilaru A, Rahman MM, Petrie JR, Green AG, Yurchenko O, Singh SP. Metabolic engineering for enhanced oil in biomass. Prog Lipid Res 2019; 74:103-129. [PMID: 30822461 DOI: 10.1016/j.plipres.2019.02.002] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 02/21/2019] [Accepted: 02/21/2019] [Indexed: 02/06/2023]
Abstract
The world is hungry for energy. Plant oils in the form of triacylglycerol (TAG) are one of the most reduced storage forms of carbon found in nature and hence represent an excellent source of energy. The myriad of applications for plant oils range across foods, feeds, biofuels, and chemical feedstocks as a unique substitute for petroleum derivatives. Traditionally, plant oils are sourced either from oilseeds or tissues surrounding the seed (mesocarp). Most vegetative tissues, such as leaves and stems, however, accumulate relatively low levels of TAG. Since non-seed tissues constitute the majority of the plant biomass, metabolic engineering to improve their low-intrinsic TAG-biosynthetic capacity has recently attracted significant attention as a novel, sustainable and potentially high-yielding oil production platform. While initial attempts predominantly targeted single genes, recent combinatorial metabolic engineering strategies have focused on the simultaneous optimization of oil synthesis, packaging and degradation pathways (i.e., 'push, pull, package and protect'). This holistic approach has resulted in dramatic, seed-like TAG levels in vegetative tissues. With the first proof of concept hurdle addressed, new challenges and opportunities emerge, including engineering fatty acid profile, translation into agronomic crops, extraction, and downstream processing to deliver accessible and sustainable bioenergy.
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Affiliation(s)
- Thomas Vanhercke
- CSIRO Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, Australia.
| | - John M Dyer
- USDA-ARS, US Arid-Land Agricultural Research Center, Maricopa, AZ, USA
| | - Robert T Mullen
- Department of Molecular and Cellular Biology, University of Guelph, ON, Canada
| | - Aruna Kilaru
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN, USA
| | - Md Mahbubur Rahman
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN, USA
| | - James R Petrie
- CSIRO Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, Australia; Folear, Goulburn, NSW, Australia
| | - Allan G Green
- CSIRO Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, Australia
| | - Olga Yurchenko
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
| | - Surinder P Singh
- CSIRO Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, Australia
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32
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Vanhercke T, Belide S, Taylor MC, El Tahchy A, Okada S, Rolland V, Liu Q, Mitchell M, Shrestha P, Venables I, Ma L, Blundell C, Mathew A, Ziolkowski L, Niesner N, Hussain D, Dong B, Liu G, Godwin ID, Lee J, Rug M, Zhou X, Singh SP, Petrie JR. Up-regulation of lipid biosynthesis increases the oil content in leaves of Sorghum bicolor. PLANT BIOTECHNOLOGY JOURNAL 2019; 17:220-232. [PMID: 29873878 PMCID: PMC6330533 DOI: 10.1111/pbi.12959] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 05/23/2018] [Accepted: 05/30/2018] [Indexed: 05/07/2023]
Abstract
Synthesis and accumulation of the storage lipid triacylglycerol in vegetative plant tissues has emerged as a promising strategy to meet the world's future need for vegetable oil. Sorghum (Sorghum bicolor) is a particularly attractive target crop given its high biomass, drought resistance and C4 photosynthesis. While oilseed-like triacylglycerol levels have been engineered in the C3 model plant tobacco, progress in C4 monocot crops has been lagging behind. In this study, we report the accumulation of triacylglycerol in sorghum leaf tissues to levels between 3 and 8.4% on a dry weight basis depending on leaf and plant developmental stage. This was achieved by the combined overexpression of genes encoding the Zea mays WRI1 transcription factor, Umbelopsis ramanniana UrDGAT2a acyltransferase and Sesamum indicum Oleosin-L oil body protein. Increased oil content was visible as lipid droplets, primarily in the leaf mesophyll cells. A comparison between a constitutive and mesophyll-specific promoter driving WRI1 expression revealed distinct changes in the overall leaf lipidome as well as transitory starch and soluble sugar levels. Metabolome profiling uncovered changes in the abundance of various amino acids and dicarboxylic acids. The results presented here are a first step forward towards the development of sorghum as a dedicated biomass oil crop and provide a basis for further combinatorial metabolic engineering.
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Affiliation(s)
| | | | | | | | | | | | - Qing Liu
- CSIRO Agriculture and FoodCanberraACTAustralia
| | | | | | | | - Lina Ma
- CSIRO Agriculture and FoodCanberraACTAustralia
| | | | - Anu Mathew
- CSIRO Agriculture and FoodCanberraACTAustralia
| | | | | | | | - Bei Dong
- CSIRO Agriculture and FoodCanberraACTAustralia
| | - Guoquan Liu
- School of Agriculture and Food SciencesUniversity of QueenslandBrisbaneQLDAustralia
| | - Ian D. Godwin
- School of Agriculture and Food SciencesUniversity of QueenslandBrisbaneQLDAustralia
| | - Jiwon Lee
- Centre for Advanced MicroscopyAustralian National UniversityCanberraACTAustralia
| | - Melanie Rug
- Centre for Advanced MicroscopyAustralian National UniversityCanberraACTAustralia
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33
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Xu X, Vanhercke T, Shrestha P, Luo J, Akbar S, Konik-Rose C, Venugoban L, Hussain D, Tian L, Singh S, Li Z, Sharp PJ, Liu Q. Upregulated Lipid Biosynthesis at the Expense of Starch Production in Potato ( Solanum tuberosum) Vegetative Tissues via Simultaneous Downregulation of ADP-Glucose Pyrophosphorylase and Sugar Dependent1 Expressions. FRONTIERS IN PLANT SCIENCE 2019; 10:1444. [PMID: 31781148 PMCID: PMC6861213 DOI: 10.3389/fpls.2019.01444] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 10/17/2019] [Indexed: 05/05/2023]
Abstract
Triacylglycerol is a major component of vegetable oil in seeds and fruits of many plants, but its production in vegetative tissues is rather limited. It would be intriguing and important to explore any possibility to expand current oil production platforms, for example from the plant vegetative tissues. By expressing a suite of transgenes involved in the triacylglycerol biosynthesis, we have previously observed substantial accumulation of triacylglycerol in tobacco (Nicotiana tabacum) leaf and potato (Solanum tuberosum) tuber. In this study, simultaneous RNA interference (RNAi) downregulation of ADP-glucose pyrophosphorylase (AGPase) and Sugar-dependent1 (SDP1), was able to increase the accumulation of triacylglycerol and other lipids in both wild type potato and the previously generated high oil potato line 69. Particularly, a 16-fold enhancement of triacylglycerol production was observed in the mature transgenic tubers derived from the wild type potato, and a two-fold increase in triacylglycerol was observed in the high oil potato line 69, accounting for about 7% of tuber dry weight, which is the highest triacylglycerol accumulation ever reported in potato. In addition to the alterations of lipid content and fatty acid composition, sugar accumulation, starch content of the RNAi potato lines in both tuber and leaf tissues were also substantially changed, as well as the tuber starch properties. Microscopic analysis further revealed variation of lipid droplet distribution and starch granule morphology in the mature transgenic tubers compared to their parent lines. This study reflects that the carbon partitioning between lipid and starch in both leaves and non-photosynthetic tuber tissues, respectively, are highly orchestrated in potato, and it is promising to convert low-energy starch to storage lipids via genetic manipulation of the carbon metabolism pathways.
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Affiliation(s)
- Xiaoyu Xu
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
- Plant Breeding Institute and Sydney Institute of Agriculture, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Thomas Vanhercke
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Pushkar Shrestha
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Jixun Luo
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Sehrish Akbar
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Christine Konik-Rose
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Lauren Venugoban
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Dawar Hussain
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Lijun Tian
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Surinder Singh
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
| | - Zhongyi Li
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
- *Correspondence: Zhongyi Li, ; Peter J. Sharp, ; Qing Liu,
| | - Peter J. Sharp
- Plant Breeding Institute and Sydney Institute of Agriculture, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
- *Correspondence: Zhongyi Li, ; Peter J. Sharp, ; Qing Liu,
| | - Qing Liu
- Research Program of Traits, CSIRO Agriculture and Food, Canberra, ACT, Australia
- *Correspondence: Zhongyi Li, ; Peter J. Sharp, ; Qing Liu,
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34
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Stochasticity in transcriptional expression of a negative regulator of Arabidopsis ABA network. 3 Biotech 2019; 9:15. [PMID: 30622853 DOI: 10.1007/s13205-018-1542-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 12/16/2018] [Indexed: 10/27/2022] Open
Abstract
Stably heritable spatiotemporal co/over-expression of distinct transcriptional regulators across generations is a desired target as they signal traffic in the cell. Here, the stability and expression pattern of AtHB7 (Arabidopsis homeodomain-leucine zipper class I) cDNA was characterized in 220 random population of transformed tomato clones where no AtHB7 orthologous has been identified in to date. Integration of p35S::AtHB7 casette was tested by the amplification of the stretches (700/425 bp) in the target by NPT II/AtHB7 oligos. Transcriptional expression pattern for the amplicons of the specific transcripts in the leaf tissues of transformants were determined by qRT-PCR. Transgene copy number was negatively correlated with transgene expression level, yet a majority of transformants (78%) carried single-copy of transgene. About 1:3 of the lines containing two-copy inserts showed less transcript expression. Heterologous CaMV 35S promoter drove AtHB7, illuminated no penalty on transgene expression levels, stability or plant phenotype under drought stress. Integration and expression analysis of transcription factors is of great significance for reliable prediction of gene dosing/functions in plant genomes so as to sustain breeding under abiotic stress to guarantee food security.
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35
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Xu Y, Caldo KMP, Pal-Nath D, Ozga J, Lemieux MJ, Weselake RJ, Chen G. Properties and Biotechnological Applications of Acyl-CoA:diacylglycerol Acyltransferase and Phospholipid:diacylglycerol Acyltransferase from Terrestrial Plants and Microalgae. Lipids 2018; 53:663-688. [PMID: 30252128 DOI: 10.1002/lipd.12081] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2018] [Revised: 07/23/2018] [Accepted: 07/24/2018] [Indexed: 12/14/2022]
Abstract
Triacylglycerol (TAG) is the major storage lipid in most terrestrial plants and microalgae, and has great nutritional and industrial value. Since the demand for vegetable oil is consistently increasing, numerous studies have been focused on improving the TAG content and modifying the fatty-acid compositions of plant seed oils. In addition, there is a strong research interest in establishing plant vegetative tissues and microalgae as platforms for lipid production. In higher plants and microalgae, TAG biosynthesis occurs via acyl-CoA-dependent or acyl-CoA-independent pathways. Diacylglycerol acyltransferase (DGAT) catalyzes the last and committed step in the acyl-CoA-dependent biosynthesis of TAG, which appears to represent a bottleneck in oil accumulation in some oilseed species. Membrane-bound and soluble forms of DGAT have been identified with very different amino-acid sequences and biochemical properties. Alternatively, TAG can be formed through acyl-CoA-independent pathways via the catalytic action of membrane-bound phospholipid:diacylglycerol acyltransferase (PDAT). As the enzymes catalyzing the terminal steps of TAG formation, DGAT and PDAT play crucial roles in determining the flux of carbon into seed TAG and thus have been considered as the key targets for engineering oil production. Here, we summarize the most recent knowledge on DGAT and PDAT in higher plants and microalgae, with the emphasis on their physiological roles, structural features, and regulation. The development of various metabolic engineering strategies to enhance the TAG content and alter the fatty-acid composition of TAG is also discussed.
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Affiliation(s)
- Yang Xu
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2P5, Canada
| | - Kristian Mark P Caldo
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2P5, Canada
- Department of Biochemistry, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2H7, Canada
| | - Dipasmita Pal-Nath
- French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
| | - Jocelyn Ozga
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2P5, Canada
| | - M Joanne Lemieux
- Department of Biochemistry, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2H7, Canada
| | - Randall J Weselake
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2P5, Canada
| | - Guanqun Chen
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 116 Street and 85 Avenue, Edmonton, Alberta, T6G 2P5, Canada
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36
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Hameed A, Zaidi SSEA, Shakir S, Mansoor S. Applications of New Breeding Technologies for Potato Improvement. FRONTIERS IN PLANT SCIENCE 2018; 9:925. [PMID: 30008733 PMCID: PMC6034203 DOI: 10.3389/fpls.2018.00925] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 06/11/2018] [Indexed: 05/17/2023]
Abstract
The first decade of genetic engineering primarily focused on quantitative crop improvement. With the advances in technology, the focus of agricultural biotechnology has shifted toward both quantitative and qualitative crop improvement, to deal with the challenges of food security and nutrition. Potato (Solanum tuberosum L.) is a solanaceous food crop having potential to feed the populating world. It can provide more carbohydrates, proteins, minerals, and vitamins per unit area of land as compared to other potential food crops, and is the major staple food in many developing countries. These aspects have driven the scientific attention to engineer potato for nutrition improvement, keeping the yield unaffected. Several studies have shown the improved nutritional value of potato tubers, for example by enhancing Amaranth Albumin-1 seed protein content, vitamin C content, β-carotene level, triacylglycerol, tuber methionine content, and amylose content, etc. Removal of anti-nutritional compounds like steroidal glycoalkaloids, acrylamide and food toxins is another research priority for scientists and breeders to improve potato tuber quality. Trait improvement using genetic engineering mostly involved the generation of transgenic products. The commercialization of these engineered products has been a challenge due to consumer preference and regulatory/ethical restrictions. In this context, new breeding technolgies like TALEN (transcription activator-like effector nucleases) and CRISPR/Cas9 (clustered regularly interspaced palindromic repeats/CRISPR-associated 9) have been employed to generate transgene-free products in a more precise, prompt and effective way. Moreover, the availability of potato genome sequence and efficient potato transformation systems have remarkably facilitated potato genetic engineering. Here we summarize the potato trait improvement and potential application of new breeding technologies (NBTs) to genetically improve the overall agronomic profile of potato.
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Affiliation(s)
- Amir Hameed
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Syed Shan-e-Ali Zaidi
- Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
| | - Sara Shakir
- Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
| | - Shahid Mansoor
- Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
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37
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Huang AHC. Plant Lipid Droplets and Their Associated Proteins: Potential for Rapid Advances. PLANT PHYSIOLOGY 2018; 176:1894-1918. [PMID: 29269574 PMCID: PMC5841732 DOI: 10.1104/pp.17.01677] [Citation(s) in RCA: 144] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Accepted: 12/10/2017] [Indexed: 05/19/2023]
Abstract
Cytoplasmic lipid droplets (LDs) of neutral lipids (triacylglycerols [TAGs], sterylesters, etc.) are reserves of high-energy metabolites and other constituents for future needs. They are present in diverse cells of eukaryotes and prokaryotes. An LD has a core of neutral lipids enclosed with a monolayer of phospholipids and proteins, which play structural and/or metabolic roles. During the past 3 decades, studies of LDs in diverse organisms have blossomed after they were found to be involved in prevalent human diseases and industrial uses. LDs in plant seeds were studied before those in mammals and microbes, and the latter studies have since moved forward. Plant LDs carry a hallmark protein called oleosin, which has a long hydrophobic hairpin penetrating the TAG core and stabilizing the LD. The oleosin gene first appeared in green algae and has evolved in enhancing promoter strength, tandem repeats, and/or expression specificity, leading to the appearance of new LD organelles, such as tapetosomes in Brassicaceae. The synthesis of LDs occurs with TAG-synthesizing enzymes on the endoplasmic reticulum (ER), and nascent TAGs are sequestered in the acyl moiety region between the bilayers of phospholipids, which results in ER-LD swelling. Oleosin is synthesized on the cytosol side of the ER and extracts the LD from the ER-LD to cytosol. This extraction of LD to the cytosol is controlled solely by the innate properties of oleosin, and modified oleosin can redirect the LD to the ER lumen and then vacuoles. The breakdown of LDs requires lipase associating with core retromer and binding to peroxisomes, which then send the enzyme to LDs via tubular extensions. Two groups of LD-associated proteins, caleosin/dioxygenase/steroleosin and LD/oil body-associated proteins, participate in cellular stress defenses via enzymic activities and binding, respectively. The surface of LDs in all plant cells may be an inert refuge for these and other proteins, which exert functions on diverse cell components. Oleosin-LDs have been explored for commercial applications; successes in their uses will rely on overcoming conceptual and technical difficulties.
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Affiliation(s)
- Anthony H C Huang
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521
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38
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Wang L, Du X, Feng Y, Liu P, Zhu J, Zhang L, Du H, Ma M, Li F. Ectopic expression of EuWRI1, encoding a transcription factor in E. ulmoides, changes the seeds oil content in transgenic tobacco. Biotechnol Prog 2018; 34:337-346. [PMID: 29314787 DOI: 10.1002/btpr.2606] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2017] [Revised: 11/13/2017] [Indexed: 11/09/2022]
Abstract
The WRINKLED1 (WRI1) gene is a well-established key transcriptional regulator involved in the regulation of fatty acid biosynthesis in developing seeds. In this study, a new WRI1 gene was isolated from seeds of Eucommia ulmoides and named EuWRI1. A close link between gibberellins signaling and EuWRI1 gene expression was suggested in this study. Functional characterization of EuWRI1 was elucidated through seed-specific expression in tobacco. In transgenic tobacco, the expression of EuWRI1 in eight independent transgenic lines was detected by semiquantitative RT-PCR. The relative mRNA accumulation of genes encoding enzymes involved in fatty acid biosynthesis (biotin carboxyl carrier protein and keto-ACP synthase 1) was also assayed in tobacco seeds. Analysis of the seeds oil content and starch content indicated that the transgenic lines showed a significant increase in seeds oil content, whereas starch content decreased significantly. Further analysis of the fatty acid composition revealed that palmitic acid (16:0), linoleic acid (18:2) and linolenic acid (18:3) increased significantly in seeds of transgenic tobacco lines, but stearic acid (18:0) levels significantly declined. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 34:337-346, 2018.
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Affiliation(s)
- Lu Wang
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Xilong Du
- College of Materials Science and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Yanzhi Feng
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Panfeng Liu
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Jingle Zhu
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Lin Zhang
- Central South University of Forestry and Technology, Changsha, Hunan, 410004, China
| | - Hongyan Du
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Mingguo Ma
- College of Materials Science and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Fangdong Li
- Paulownia Research and Development Center, State Forestry Administration, Zhengzhou, Henan, 450003, China
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39
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Martin C, Li J. Medicine is not health care, food is health care: plant metabolic engineering, diet and human health. THE NEW PHYTOLOGIST 2017; 216:699-719. [PMID: 28796289 DOI: 10.1111/nph.14730] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Accepted: 06/23/2017] [Indexed: 05/03/2023]
Abstract
Contents 699 I. 699 II. 700 III. 700 IV. 706 V. 707 VI. 714 714 References 714 SUMMARY: Plants make substantial contributions to our health through our diets, providing macronutrients for energy and growth as well as essential vitamins and phytonutrients that protect us from chronic diseases. Imbalances in our food can lead to deficiency diseases or obesity and associated metabolic disorders, increased risk of cardiovascular diseases and cancer. Nutritional security is now a global challenge which can be addressed, at least in part, through plant metabolic engineering for nutritional improvement of foods that are accessible to and eaten by many. We review the progress that has been made in nutritional enhancement of foods, both improvements through breeding and through biotechnology and the engineering principles on which increased phytonutrient levels are based. We also consider the evidence, where available, that such foods do enhance health and protect against chronic diseases.
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Affiliation(s)
- Cathie Martin
- Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | - Jie Li
- Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
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40
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Pyc M, Cai Y, Greer MS, Yurchenko O, Chapman KD, Dyer JM, Mullen RT. Turning Over a New Leaf in Lipid Droplet Biology. TRENDS IN PLANT SCIENCE 2017; 22:596-609. [PMID: 28454678 DOI: 10.1016/j.tplants.2017.03.012] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2017] [Revised: 03/22/2017] [Accepted: 03/24/2017] [Indexed: 05/08/2023]
Abstract
Lipid droplets (LDs) in plants have long been viewed as storage depots for neutral lipids that serve as sources of carbon, energy, and lipids for membrane biosynthesis. While much of our knowledge of LD function in plants comes from studies of oilseeds, a recent surge in research on LDs in non-seed cell types has led to an array of new discoveries. It is now clear that both evolutionarily conserved and kingdom-specific mechanisms underlie the biogenesis of LDs in eukaryotes, and proteomics and homology-based approaches have identified new protein players. This review highlights some of these recent discoveries and other new areas of plant LD research, including their role in stress responses and as targets of metabolic engineering strategies aimed at increasing oil content in bioenergy crops.
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Affiliation(s)
- Michal Pyc
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Yingqi Cai
- Department of Biological Sciences, Center for Plant Lipid Research, University of North Texas, Denton, TX 76203, USA
| | - Michael S Greer
- Department of Biological Sciences, Center for Plant Lipid Research, University of North Texas, Denton, TX 76203, USA
| | - Olga Yurchenko
- US Department of Agriculture, Agricultural Research Service, US Arid-Land Agricultural Research Center, Maricopa, AZ 85138, USA
| | - Kent D Chapman
- Department of Biological Sciences, Center for Plant Lipid Research, University of North Texas, Denton, TX 76203, USA
| | - John M Dyer
- US Department of Agriculture, Agricultural Research Service, US Arid-Land Agricultural Research Center, Maricopa, AZ 85138, USA.
| | - Robert T Mullen
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada.
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41
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Zhi Y, Taylor MC, Campbell PM, Warden AC, Shrestha P, El Tahchy A, Rolland V, Vanhercke T, Petrie JR, White RG, Chen W, Singh SP, Liu Q. Comparative Lipidomics and Proteomics of Lipid Droplets in the Mesocarp and Seed Tissues of Chinese Tallow ( Triadica sebifera). FRONTIERS IN PLANT SCIENCE 2017; 8:1339. [PMID: 28824675 PMCID: PMC5541829 DOI: 10.3389/fpls.2017.01339] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Accepted: 07/18/2017] [Indexed: 05/04/2023]
Abstract
Lipid droplets (LDs) are composed of a monolayer of phospholipids (PLs), surrounding a core of non-polar lipids that consist mostly of triacylglycerols (TAGs) and to a lesser extent diacylglycerols. In this study, lipidome analysis illustrated striking differences in non-polar lipids and PL species between LDs derived from Triadica sebifera seed kernels and mesocarp. In mesocarp LDs, the most abundant species of TAG contained one C18:1 and two C16:0 and fatty acids, while TAGs containing three C18 fatty acids with higher level of unsaturation were dominant in the seed kernel LDs. This reflects the distinct differences in fatty acid composition of mesocarp (palmitate-rich) and seed-derived oil (α-linoleneate-rich) in T. sebifera. Major PLs in seed LDs were found to be rich in polyunsaturated fatty acids, in contrast to those with relatively shorter carbon chain and lower level of unsaturation in mesocarp LDs. The LD proteome analysis in T. sebifera identified 207 proteins from mesocarp, and 54 proteins from seed kernel, which belong to various functional classes including lipid metabolism, transcription and translation, trafficking and transport, cytoskeleton, chaperones, and signal transduction. Oleosin and lipid droplets associated proteins (LDAP) were found to be the predominant proteins associated with LDs in seed and mesocarp tissues, respectively. We also show that LDs appear to be in close proximity to a number of organelles including the endoplasmic reticulum, mitochondria, peroxisomes, and Golgi apparatus. This comparative study between seed and mesocarp LDs may shed some light on the structure of plant LDs and improve our understanding of their functionality and cellular metabolic networks in oleaginous plant tissues.
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Affiliation(s)
- Yao Zhi
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural UniversityWuhan, China
- CSIRO Agriculture and FoodCanberra, ACT, Australia
| | | | | | | | | | | | | | | | | | | | - Wenli Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural UniversityWuhan, China
- *Correspondence: Wenli Chen
| | | | - Qing Liu
- CSIRO Agriculture and FoodCanberra, ACT, Australia
- Qing Liu
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42
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Mitchell M, Pritchard J, Okada S, Larroque O, Yulia D, Pettolino F, Szydlowski N, Singh S, Liu Q, Ral JP. Oil Accumulation in Transgenic Potato Tubers Alters Starch Quality and Nutritional Profile. FRONTIERS IN PLANT SCIENCE 2017; 8:554. [PMID: 28446916 PMCID: PMC5388768 DOI: 10.3389/fpls.2017.00554] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 03/27/2017] [Indexed: 05/07/2023]
Abstract
Plant storage compounds such as starch and lipids are important for human and animal nutrition as well as industry. There is interest in diverting some of the carbon stored in starch-rich organs (leaves, tubers, and cereal grains) into lipids in order to improve the energy density or nutritional properties of crops as well as providing new sources of feedstocks for food and manufacturing. Previously, we generated transgenic potato plants that accumulate up to 3.3% triacylglycerol (TAG) by dry weight in the tubers, which also led to changes in starch content, starch granule morphology and soluble sugar content. The aim of this study was to investigate how TAG accumulation affects the nutritional and processing properties of high oil potatoes with a particular focus on starch structure, physical and chemical properties. Overall, TAG accumulation was correlated with increased energy density, total nitrogen, amino acids, organic acids and inorganic phosphate, which could be of potential nutritional benefit. However, TAG accumulation had negative effects on starch quality as well as quantity. Starch from high oil potatoes had lower amylose and phosphate content, reduced peak viscosity and higher gelatinization temperature. Interestingly, starch pasting properties were disproportionately affected in lines accumulating the highest levels of TAG (>2.5%) compared to those accumulating only moderate levels (0.2-1.6%). These results indicate that optimized engineering of specialized crops for food, feed, fuel and chemical industries requires careful selection of traits, and an appropriate level of transgene expression, as well as a better understanding of starch structure and carbon partitioning in plant storage organs.
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Affiliation(s)
- Madeline Mitchell
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
- *Correspondence: Madeline Mitchell
| | - Jenifer Pritchard
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Shoko Okada
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Oscar Larroque
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Dina Yulia
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Filomena Pettolino
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Nicolas Szydlowski
- Univ. Lille, CNRS, USR 3290 - MSAP - Miniaturisation pour la Synthèse l'Analyse et la ProtéomiqueLille, France
| | - Surinder Singh
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Qing Liu
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
| | - Jean-Philippe Ral
- Commonwealth Scientific and Industrial Research OrganisationCanberra, ACT, Australia
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