Trophic signatures of seabirds suggest shifts in oceanic ecosystems

Emaciated enigma: Decline in body conditions of common dolphins in the Celtic Seas ecoregion

Monitoring the nutritional health of cetaceans has become increasingly important in a changing environment, where multiple stressors impact animals. Particularly for those species that require consumption of energy-dense prey, such as the common dolphin. Thus far, no uniform measure for monitoring body condition has been recommended across cetaceans, and species-specific measures may need to be developed if employed as a population condition indicator under Descriptor 1 of the Marine Strategy Framework Directive. Here, nine morphometric body condition indices were applied to long-term common dolphin stranding data sets originating from Ireland and the UK. We report a recent decline in the nutritional health of common dolphins in the Celtic Seas ecoregion comparing animals from 2017 to 2019 to animals from 1990 to 2006, with an increase in cases of animals dying due to starvation. Using ordinal regression trees, ventral blubber thickness (VBT) was identified as the most important index to predict nutritional status, defined at necropsy, followed by the scaled mass index (SMI). Using generalised linear models, both the VBT and SMI indices differentiated individuals that died from chronic and acute causes of death (i.e., bycatch), where animals in chronic conditions had significantly thinner VBT and lower SMI. Both significant temporal and seasonal patterns in VBT were identified, with poorer body conditions observed during the autumn and better body conditions observed during the spring, as well as an overall decline detected in VBT during the study period. While VBT was positively correlated with total body length, SMI showed the opposite trend. The VBT index is recommended for monitoring nutritional health within the species when total body length and season are considered. Further research is needed to understand the underlying causes for the observed decline, including shifts in prey availability and/or quality, to inform targeted conservation management strategies.

Blending census and paleolimnological data allows for tracking the establishment and growth of a major gannet colony over several centuries

Seabird colonies with long-term monitoring records, i.e., > 50 years, are rare. The population data for northern gannets (Morus bassanus) in Cape St. Mary's (CSM) Ecological Reserve (Newfoundland and Labrador, Canada) is robust, extending back to 1883 when the colony was presumed established. We inferred the colony's historical population shifts by measuring ornithogenic proxies in a dated sediment record collected from a nearby pond. Our record extended to the early eighteenth century, but the proxy data only began to show significant signs of seabird presence between ca. 1832 and 1910, aligning with the period gannets were first observed at CSM. Through the twentieth century, we observed significant increases in δ15N, P, Zn, Cd, and chlorophyll a, coeval with a shift in the dominant diatom species, indicating rapid colony growth. The proxies were overall highest in ca. 2005, corresponding to the reported historical maximum of the gannet colony in 2009. Our results validate that paleo-reconstructions using ornithogenic proxies can accurately reflect population trends and provide a stronger understanding of the colony's establishment and growth. This study highlights the value of applying paleolimnological methods in seabird population studies to frame the history of a colony's dynamics and inform conservation efforts.

Scaling up ocean conservation through recognition of key biodiversity areas in the Southern Ocean from multispecies tracking data

Biodiversity is critical for maintaining ecosystem function but is threatened by increasing anthropogenic pressures. In the Southern Ocean, a highly biologically productive region containing many endemic species, proactive management is urgently needed to mitigate increasing pressures from fishing, climate change, and tourism. Site-based conservation is one important tool for managing the negative impacts of human activities on ecosystems. The Key Biodiversity Area (KBA) Standard is a standardized framework used to define sites vital for the persistence of global biodiversity based on criteria and quantitative thresholds. We used tracking data from 14 species of Antarctic and subantarctic seabirds and pinnipeds from the publicly available Retrospective Analysis of Antarctic Tracking Data (RAATD) data set to define KBAs for a diverse suite of marine predators. We used track2kba, an R package that supports identification of KBAs from telemetry data through identification of highly used habitat areas and estimates of local abundance within sites. We compared abundance estimates at each site with thresholds for KBA criteria A1, B1, and D1 (related to globally threatened species, individual geographically restricted species, and demographic aggregations, respectively). We identified 30 potential KBAs for 13 species distributed throughout the Southern Ocean that were vital for each individual species, population, and life-history stage for which they were determined. These areas were identified as highly used by these populations based on observational data and complement the ongoing habitat modeling and bioregionalization work that has been used to prioritize conservation areas in this region. Although further work is needed to identify potential KBAs based on additional current and future data sets, we highlight the benefits of utilizing KBAs as part of a holistic approach to marine conservation, given their significant value as a global conservation tool.

Trophic plasticity of a tropical seabird revealed through DNA metabarcoding and stable isotope analyses

DNA metabarcoding and stable isotope analysis have significantly advanced our understanding of marine trophic ecology, aiding systematic research on foraging habits and species conservation. In this study, we employed these methods to analyse faecal and blood samples, respectively, to compare the trophic ecology of two Red-billed Tropicbird (Phaethonaethereus; Linnaeus, 1758) colonies on Mexican islands in the Pacific. Trophic patterns among different breeding stages were also examined at both colonies. Dietary analysis reveals a preference for epipelagic fish, cephalopods, and small crustaceans, with variations between colonies and breeding stages. Isotopic values (δ15N and δ13C) align with DNA metabarcoding results, with wider niches during incubation stages. Differences in diet are linked to environmental conditions and trophic plasticity among breeding stages, influenced by changing physiological requirements and prey availability. Variations in dietary profiles reflect contrasting environmental conditions affecting local prey availability.

Amino acid-specific isotopes reveal changing five-dimensional niche segregation in Pacific seabirds over 50 years

Hutchison's niche theory suggests that coexisting competing species occupy non-overlapping hypervolumes, which are theoretical spaces encompassing more than three dimensions, within an n-dimensional space. The analysis of multiple stable isotopes can be used to test these ideas where each isotope can be considered a dimension of niche space. These hypervolumes may change over time in response to variation in behaviour or habitat, within or among species, consequently changing the niche space itself. Here, we use isotopic values of carbon and nitrogen of ten amino acids, as well as sulphur isotopic values, to produce multi-isotope models to examine niche segregation among an assemblage of five coexisting seabird species (ancient murrelet Synthliboramphus antiquus, double-crested cormorant Phalacrocorax auritus, Leach's storm-petrel Oceanodrama leucorhoa, rhinoceros auklet Cerorhinca monocerata, pelagic cormorant Phalacrocorax pelagicus) that inhabit coastal British Columbia. When only one or two isotope dimensions were considered, the five species overlapped considerably, but segregation increased in more dimensions, but often in complex ways. Thus, each of the five species occupied their own isotopic hypervolume (niche), but that became apparent only when factoring the increased information from sulphur and amino acid specific isotope values, rather than just relying on proxies of δ15N and δ13C alone. For cormorants, there was reduction of niche size for both species consistent with a decline in their dominant prey, Pacific herring Clupea pallasii, from 1970 to 2006. Consistent with niche theory, cormorant species showed segregation across time, with the double-crested demonstrating a marked change in diet in response to prey shifts in a higher dimensional space. In brief, incorporating multiple isotopes (sulfur, PC1 of δ15N [baselines], PC2 of δ15N [trophic position], PC1 and PC2 of δ13C) metrics allowed us to infer changes and differences in food web topology that were not apparent from classic carbon-nitrogen biplots.

Anthropogenic debris ingestion in a tropical seabird community: Insights from taxonomy and foraging distribution

Oceans have been considered as an unlimited supply of goods and services, but resource extraction and waste disposal became ubiquitous and have been damaging the health of marine ecosystems. Finding suitable sentinel species of the human impacts on the oceans is thus imperative, since they may work as early warnings of disruptive situations. In this study, we investigated how taxonomy and foraging distribution influenced the occurrence of anthropogenic debris among five seabird species inhabiting the tropical Atlantic region. Occurrence of anthropogenic debris was assessed using faeces of breeding individuals as a proxy of ingestion. A total of 268 particles were extracted from all samples. The categories "fragments" and "fibres", as well as the colour "blue", were the most prevalent characteristics across species. There was a high diversity of polymers from cellulosic particles to synthetic plastics (Anthropogenic Cellulosic 26.9 %; Polyester 7.7 %; Varnish 5.8 %; Polypropylene 1.9 %). Species with a more coastal foraging strategy exhibited higher occurrence and number of anthropogenic debris when compared to species foraging comparably more in pelagic areas. This suggests that anthropogenic debris are more prevalent in coastal foraging areas, where human activities occur in higher number and frequency (e.g., fisheries) and sources of freshwater input from inland are at close distance. These results provide more evidence to the growing perception on the ubiquity and diversity of anthropogenic debris in the marine environment, and further support the usefulness of using seabirds as bio-indicators of anthropogenic pollution in both neritic and oceanic regions.

Historic trophic decline in New England's coastal marine ecosystem

Overfishing is a worldwide occurrence that simplifies marine food webs, changes trophic patterns, and alters community structure, affecting not only the density of harvested species but also their trophic function. The northwestern Atlantic has a history of heavy fishing, and over the past century has also experienced destructive bottom fishing and harmful mobile fishing gear. After confirming that preservation solvent did not alter the nitrogen stable isotopes of preserved samples, we used museum specimens and modern samples to analyze nitrogen stable isotopes in tissues of two common demersal fishes pre-1950 (1850 to 1950) compared to 2021 to assess changes in trophic positions of coastal New England consumers over this time period. Both the mesopredator Centropristis striata (black sea bass) and the benthivore Stenotomus chrysops (scup) experienced significant declines in trophic position during this time. C. striata declined almost a full trophic level, S. chrysops declined half a trophic level, and these species are now occupying almost the same trophic position. Heavy fishing activities potentially shorten food chains, simplify trophic complexity, lessen the separation of trophic niches, and generally flatten food webs. The consequences of these within-species shifts are poorly investigated but could generate underappreciated cascading impacts on community structure and function. Archived natural-history collections are an invaluable resource for investigating ecological changes in natural communities through time. The evaluation of changing trophic positions via stable isotope analysis may allow fisheries managers to quantify large-scale effects of fishing on ecosystems and food webs over time.

Stable isotope analysis in food web research: Systematic review and a vision for the future for the Baltic Sea macro-region

Food web research provides essential insights into ecosystem functioning, but practical applications in ecosystem-based management are hampered by a current lack of knowledge synthesis. To address this gap, we provide the first systematic review of ecological studies applying stable isotope analysis, a pivotal method in food web research, in the heavily anthropogenically impacted Baltic Sea macro-region. We identified a thriving research field, with 164 publications advancing a broad range of fundamental and applied research topics, but also found structural shortcomings limiting ecosystem-level understanding. We argue that enhanced collaboration and integration, including the systematic submission of Baltic Sea primary datasets to stable isotope databases, would help to overcome many of the current shortcomings, unify the scattered knowledge base, and promote future food web research and science-based resource management. The effort undertaken here demonstrates the value of macro-regional synthesis, in enhancing access to existing data and supporting strategic planning of research agendas.

Monitoring of mercury in the mesopelagic domain of the Pacific and Atlantic oceans using body feathers of Bulwer's petrel as a bioindicator

Global mercury pollution has markedly and consistently grown over the past 70 years (although with regional variations in trends) and is a source of major concern. Mercury contamination is particularly prevalent in biota of the mesopelagic layers of the open ocean, but these realms are little studied, and we lack a large scale picture of contamination in living organisms of this region. The Bulwer's petrel Bulweria bulwerii, a species of migratory seabird, is a highly specialised predator of mesopelagic fish and squid, and therefore can be used as a bioindicator for the mesopelagic domain. Mercury accumulated by the birds through diet is excreted into feathers during the moulting process in adults and feather growth in chicks, reflecting contamination in the non-breeding and breeding periods, respectively, and hence the influence of different, largely non-overlapping breeding and non-breeding ranges. We studied mercury in feathers and the trophic position in two colonies from the Atlantic Ocean (Portugal and Cape Verde) and two colonies from the Pacific Ocean (Japan and Hawaii). We found significantly lower levels of mercury in adult and chick samples from the Pacific Ocean compared with samples from the Atlantic Ocean. However, we did not detect differences in trophic position of chicks among colonies and oceans, suggesting that differences in mercury measured in feathers reflect levels of environmental contamination, rather than differences in the structure of the trophic chain in different oceans. We conclude that despite a reduction in mercury levels in the Atlantic in recent decades, mesopelagic organisms in this ocean remain more heavily contaminated than in the Pacific at tropical and subtropical latitudes. We suggest that Bulwer's petrel is a highly suitable species to monitor the global contamination of mercury in the mesopelagic domain.

Inter-annual changes in oceanic conditions drives spatial and trophic consistency of a tropical marine predator

Pelagic seabirds exhibit plasticity in foraging characteristics in relation to oceanographic conditions. This should be particularly relevant in tropical marine environments where food resources are naturally more unpredictable. We studied how inter-annual variations (2013-2018) in tropical oceanographic conditions (driver of oceanic productivity) can influence the spatial and trophic ecology of Cape Verde shearwater (Calonectris edwardsii) during the breeding season. During years of poor oceanographic conditions around the colony, birds engaged in longer trips to West Africa, showed higher spatial and behavioural consistency, and presented a wider isotopic niche. Opposite patterns were generally found for years of good oceanographic conditions, when birds foraged more on their colony surroundings. New foraging areas off West Africa were highlighted as relevant, especially during years of poor environmental conditions. This study highlights the need for long-term studies to assess variation in foraging areas and foraging decisions by seabird populations.

Following up mercury pollution in the Ebro Delta (NE Spain): Audouin's gull fledglings as model organisms to elucidate anthropogenic impacts on the environment

As top-predators in marine ecosystems, seabirds are regarded as appropriate bioindicator species for a variety of contaminants. Mercury (Hg) is a global pollutant, which can biomagnify along marine and freshwater food webs. Therefore, mercury body burden in seabirds, such as gulls, will integrate information about pollution in the environment. In the Ebro Delta (NE Spain), legacy mercury pollution from a chlor-alkali industry located ca. 100 km upstream of the Ebro river mouth has been affecting the delta environment. We have analyzed a 15-year temporal series (2004-2019) of Hg in birds from a breeding colony of Audouin's gull (Ichthyaetus audouinii) in the Ebro Delta to understand how fluctuations in Hg levels are coupled to human activities in the industrial area in the upstream region of the river. Stable isotopic signatures of C and N (δ¹³C_bulk and δ¹⁵N_bulk) are determined to characterize the trophic ecology of the species. Since only δ¹³C_bulk but not δ¹⁵N_bulk was associated with THg levels, we used compound-specific stable nitrogen isotope analysis of amino acids (AA-CSIA) to evaluate the causes of variation in δ¹⁵N_bulk to further investigate the idea of a decoupling of δ¹⁵N_bulk and THg over time. We found Audouin's gull to be sensitive to Hg variations in the environment due to anthropogenic changes and to be a good indicator species for this contaminant in the Ebro Delta.

Changes in positive associations among vertebrate predators at South Georgia during winter

We studied positive associations among seabirds and marine mammals at South Georgia on research cruises during the Austral winters of 1985, 1991 and 1993 and found statistically significant differences. We collected data on abundance and distribution, providing a critical reference for sub-Antarctic conservation in anticipation of future environmental changes. We found significant changes in the abundance of 29% of species surveyed and a consequent change in species diversity. We postulate that the resulting altered community composition may have previously unanticipated population effects on the component species, due to changes in positive interactions among species which use each other as cues to the presence of prey. We found a near threefold reduction in spatial overlap among vertebrate predators, associated with warming sea temperatures. As the strength and opportunity for positive associations decreases in the future, feeding success may be negatively impacted. In this way, environmental changes may disproportionately impact predator abundances and such changes are likely already underway, as Southern Ocean temperatures have increased substantially since our surveys. Of course the changes we describe are not solely due to changing sea temperature or any other single cause—many factors are important and we do not claim to have removed these from consideration. Rather, we report previously undocumented changes in positive associations among species, and argue these changes may continue into the future, given near-certain continued increases in climate-related changes.

Herbaria macroalgae as a proxy for historical upwelling trends in Central California

Planning for future ocean conditions requires historical data to establish more informed ecological baselines. To date, this process has been largely limited to instrument records and observations that begin around 1950. Here, we show how marine macroalgae specimens from herbaria repositories may document long-term ecosystem processes and extend historical information records into the nineteenth century. We tested the effect of drying and pressing six macroalgae species on amino acid, heavy metal and bulk stable isotope values over 1 year using modern and archived paper. We found historical paper composition did not consistently affect values. Certain species, however, had higher variability in particular metrics while others were more consistent. Multiple herbaria provided Gelidium (Rhodophyta) samples collected in southern Monterey Bay from 1878 to 2018. We examined environmental relationships and found δ15N correlated with the Bakun upwelling index, the productivity regime of this ecosystem, from 1946 to 2018. Then, we hindcasted the Bakun index using its derived relationship with Gelidium δ15N from 1878 to 1945. This hindcast provided new information, observing an upwelling decrease mid-century leading up to the well-known sardine fishery crash. Our case study suggests marine macroalgae from herbaria are an underused resource of the marine environment that precedes modern scientific data streams.

Data Reconstruction for Remotely Sensed Chlorophyll-a Concentration in the Ross Sea Using Ensemble-Based Machine Learning

Polar regions are too harsh to be continuously observed using ocean color (OC) sensors because of various limitations due to low solar elevations, ice effects, peculiar phytoplankton photosynthetic parameters, optical complexity of seawater and persistence of clouds and fog. Therefore, the OC data undergo a quality-control process, eventually accompanied by considerable data loss. We attempted to reconstruct these missing values for chlorophyll-a concentration (CHL) data using a machine-learning technique based on multiple datasets (satellite and reanalysis datasets) in the Ross Sea, Antarctica. This technique—based on an ensemble tree called random forest (RF)—was used for the reconstruction. The performance of the RF model was robust, and the reconstructed CHL data were consistent with satellite measurements. The reconstructed CHL data allowed a high intrinsic resolution of OC to be used without specific techniques (e.g., spatial average). Therefore, we believe that it is possible to study multiple characteristics of phytoplankton dynamics more quantitatively, such as bloom initiation/termination timings and peaks, as well as the variability in time scales of phytoplankton growth. In addition, because the reconstructed CHL showed relatively higher accuracy than satellite observations compared with the in situ data, our product may enable more accurate planktonic research.

Long-term dietary shift and population decline of a pelagic seabird-A health check on the tropical Atlantic?

In the face of accelerating ecological change to the world's oceans, seabirds are some of the best bio-indicators of marine ecosystem function. However, unravelling ecological changes that pre-date modern monitoring programmes remains challenging. Using stable isotope analysis of feathers and regurgitants collected from sooty terns (Onychoprion fuscatus) nesting at a major Atlantic colony, we reconstructed a long-term dietary time series from 1890 to the present day and show that a significant dietary shift occurred during the second half of the twentieth century coinciding with an apparent population collapse of approximately 84%. After correcting for the "Suess Effect," δ¹³ C in feathers declined by ~1.5‰ and δ¹⁵ N by ~2‰ between the 1890s and the present day, indicating that birds changed their diets markedly over the period of population decline. Isotopic niches were equally wide before and after the population collapse but isotopic mixing models suggest that birds have grown ever more reliant on nutrient-poor squid and invertebrates as teleost fish have declined in availability. Given that sooty terns rely heavily on associations with sub-surface predators such as tuna to catch fish prey, the rapid expansion of industrialized fisheries for these species over the same period seems a plausible mechanism. Our results suggest that changes to marine ecosystems over the past 60 years have had a dramatic impact on the ecology of the most abundant seabird of tropical oceans, and highlight the potentially pervasive consequences of large predatory fish depletion on marine ecosystem function.

Trophic declines and decadal-scale foraging segregation in three pelagic seabirds

We investigated how foraging habits vary among three ecologically distinct wide-ranging seabirds. Using amino acid δ¹⁵N proxies for nutrient regime (δ¹⁵N_Phe) and trophic position (Δδ¹⁵N_Glu-Phe), we compared Newell's shearwater (Puffinus newelli) and Laysan albatross (Phoebastria immutabilis) foraging habits over the past 50-100 years, respectively, to published records for the Hawaiian petrel (Pterodroma sandwichensis). Standard ellipses constructed from the isotope proxies show that inter-population and interspecific foraging segregation have persisted for several decades. We found no evidence of a shift in nutrient regime at the base of the food web for the three species. However, our data identify a trophic decline during the past century for Newell's shearwater and Laysan albatross (probability ≥ 0.97), echoing a similar decline observed in the Hawaiian petrel. During this time, Newell's shearwaters and Hawaiian petrels have experienced population declines and Laysan albatross has experienced range extension and apparent population stability. Counting other recent studies, a pattern of trophic decline over the past century has now been identified in eight species of pelagic seabirds that breed in the Hawaiian Islands. Because our study species forage broadly across the North Pacific Ocean and differ in morphological and behavioral traits and feeding methods, the identified trophic declines suggest a pervasive shift in food web architecture within the past century.