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Dan C, Hulse BK, Kappagantula R, Jayaraman V, Hermundstad AM. A neural circuit architecture for rapid learning in goal-directed navigation. Neuron 2024; 112:2581-2599.e23. [PMID: 38795708 DOI: 10.1016/j.neuron.2024.04.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 01/16/2024] [Accepted: 04/30/2024] [Indexed: 05/28/2024]
Abstract
Anchoring goals to spatial representations enables flexible navigation but is challenging in novel environments when both representations must be acquired simultaneously. We propose a framework for how Drosophila uses internal representations of head direction (HD) to build goal representations upon selective thermal reinforcement. We show that flies use stochastically generated fixations and directed saccades to express heading preferences in an operant visual learning paradigm and that HD neurons are required to modify these preferences based on reinforcement. We used a symmetric visual setting to expose how flies' HD and goal representations co-evolve and how the reliability of these interacting representations impacts behavior. Finally, we describe how rapid learning of new goal headings may rest on a behavioral policy whose parameters are flexible but whose form is genetically encoded in circuit architecture. Such evolutionarily structured architectures, which enable rapidly adaptive behavior driven by internal representations, may be relevant across species.
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Affiliation(s)
- Chuntao Dan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Brad K Hulse
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Ramya Kappagantula
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Vivek Jayaraman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
| | - Ann M Hermundstad
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
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2
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van Dijk T, De Wagter C, de Croon GCHE. Visual route following for tiny autonomous robots. Sci Robot 2024; 9:eadk0310. [PMID: 39018372 DOI: 10.1126/scirobotics.adk0310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 06/14/2024] [Indexed: 07/19/2024]
Abstract
Navigation is an essential capability for autonomous robots. In particular, visual navigation has been a major research topic in robotics because cameras are lightweight, power-efficient sensors that provide rich information on the environment. However, the main challenge of visual navigation is that it requires substantial computational power and memory for visual processing and storage of the results. As of yet, this has precluded its use on small, extremely resource-constrained robots such as lightweight drones. Inspired by the parsimony of natural intelligence, we propose an insect-inspired approach toward visual navigation that is specifically aimed at extremely resource-restricted robots. It is a route-following approach in which a robot's outbound trajectory is stored as a collection of highly compressed panoramic images together with their spatial relationships as measured with odometry. During the inbound journey, the robot uses a combination of odometry and visual homing to return to the stored locations, with visual homing preventing the buildup of odometric drift. A main advancement of the proposed strategy is that the number of stored compressed images is minimized by spacing them apart as far as the accuracy of odometry allows. To demonstrate the suitability for small systems, we implemented the strategy on a tiny 56-gram drone. The drone could successfully follow routes up to 100 meters with a trajectory representation that consumed less than 20 bytes per meter. The presented method forms a substantial step toward the autonomous visual navigation of tiny robots, facilitating their more widespread application.
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Affiliation(s)
- Tom van Dijk
- Control and Operations Department, Faculty of Aerospace Engineering, Delft University of Technology, Delft, Netherlands
| | - Christophe De Wagter
- Control and Operations Department, Faculty of Aerospace Engineering, Delft University of Technology, Delft, Netherlands
| | - Guido C H E de Croon
- Control and Operations Department, Faculty of Aerospace Engineering, Delft University of Technology, Delft, Netherlands
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3
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Lohnas LJ, Howard MW. The influence of emotion on temporal context models. Cogn Emot 2024:1-29. [PMID: 39007902 DOI: 10.1080/02699931.2024.2371075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Accepted: 06/17/2024] [Indexed: 07/16/2024]
Abstract
Temporal context models (TCMs) have been influential in understanding episodic memory and its neural underpinnings. Recently, TCMs have been extended to explain emotional memory effects, one of the most clinically important findings in the field of memory research. This review covers recent advances in hypotheses for the neural representation of spatiotemporal context through the lens of TCMs, including their ability to explain the influence of emotion on episodic and temporal memory. In recent years, simplifying assumptions of "classical" TCMs - with exponential trace decay and the mechanism by which temporal context is recovered - have become increasingly clear. The review also outlines how recent advances could be incorporated into a future TCM, beyond classical assumptions, to integrate emotional modulation.
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Affiliation(s)
- Lynn J Lohnas
- Department of Psychology, Syracuse University, Syracuse, NY, USA
| | - Marc W Howard
- Department of Psychological and Brain Sciences, Boston University, Boston, MA, USA
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Kong LW, Brewer GA, Lai YC. Reservoir-computing based associative memory and itinerancy for complex dynamical attractors. Nat Commun 2024; 15:4840. [PMID: 38844437 PMCID: PMC11156990 DOI: 10.1038/s41467-024-49190-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 05/24/2024] [Indexed: 06/09/2024] Open
Abstract
Traditional neural network models of associative memories were used to store and retrieve static patterns. We develop reservoir-computing based memories for complex dynamical attractors, under two common recalling scenarios in neuropsychology: location-addressable with an index channel and content-addressable without such a channel. We demonstrate that, for location-addressable retrieval, a single reservoir computing machine can memorize a large number of periodic and chaotic attractors, each retrievable with a specific index value. We articulate control strategies to achieve successful switching among the attractors, unveil the mechanism behind failed switching, and uncover various scaling behaviors between the number of stored attractors and the reservoir network size. For content-addressable retrieval, we exploit multistability with cue signals, where the stored attractors coexist in the high-dimensional phase space of the reservoir network. As the length of the cue signal increases through a critical value, a high success rate can be achieved. The work provides foundational insights into developing long-term memories and itinerancy for complex dynamical patterns.
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Affiliation(s)
- Ling-Wei Kong
- Department of Computational Biology, Cornell University, Ithaca, New York, USA
- School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona, USA
| | - Gene A Brewer
- Department of Psychology, Arizona State University, Tempe, Arizona, USA
| | - Ying-Cheng Lai
- School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona, USA.
- Department of Physics, Arizona State University, Tempe, Arizona, USA.
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5
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Tang Z, Wang X, Yang C, Chen Z, Zeng Z. A Bionic Localization Memristive Circuit Based on Spatial Cognitive Mechanisms of Hippocampus and Entorhinal Cortex. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2024; 18:552-563. [PMID: 38805341 DOI: 10.1109/tbcas.2024.3350135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2024]
Abstract
In this article, a bionic localization memristive circuit is proposed, which mainly consists of head direction cell module, grid cell module, place cell module and decoding module. This work modifies the two-dimensional Continuous Attractor Network (CAN) model of grid cells into two one-dimensional models in X and Y directions. The head direction cell module utilizes memristors to integrate angular velocity and represents the real orientation of an agent. The grid cell module uses memristors to sense linear velocity and orientation signals, which are both self-motion cues, and encodes the position in space by firing in a periodic mode. The place cell module receives the grid cell module's output and fires in a specific position. The decoding module decodes the angle or place information and transfers the neuron state to a 'one-hot' code. This proposed circuit completes the localizing task in space and realizes in-memory computing due to the use of memristors, which can shorten the execution time. The functions mentioned above are implemented in LTSPICE. The simulation results show that the proposed circuit can realize path integration and localization. Moreover, it is shown that the proposed circuit has good robustness and low area overhead. This work provides a possible application idea in a prospective robot platform to help the robot localize and build maps.
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Olson CS, Schulz NG, Ragsdale CW. Neuronal segmentation in cephalopod arms. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.29.596333. [PMID: 38853825 PMCID: PMC11160704 DOI: 10.1101/2024.05.29.596333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
The prehensile arms of the cephalopod are among these animals most remarkable features, but the neural circuitry governing arm and sucker movements remains largely unknown. We studied the neuronal organization of the adult axial nerve cord (ANC) of Octopus bimaculoides with molecular and cellular methods. The ANCs, which lie in the center of every arm, are the largest neuronal structures in the octopus, containing four times as many neurons as found in the central brain. In transverse cross section, the cell body layer (CBL) of the ANC wraps around its neuropil (NP) with little apparent segregation of sensory and motor neurons or nerve exits. Strikingly, when studied in longitudinal sections, the ANC is segmented. ANC neuronal cell bodies form columns separated by septa, with 15 segments overlying each pair of suckers. The segments underlie a modular organization to the ANC neuropil: neuronal cell bodies within each segment send the bulk of their processes directly into the adjoining neuropil, with some reaching the contralateral side. In addition, some nerve processes branch upon entering the NP, forming short-range projections to neighboring segments and mid-range projections to the ANC segments of adjoining suckers. The septa between the segments are employed as ANC nerve exits and as channels for ANC vasculature. Cellular analysis establishes that adjoining septa issue nerves with distinct fiber trajectories, which across two segments (or three septa) fully innervate the arm musculature. Sucker nerves also use the septa, setting up a nerve fiber "suckerotopy" in the sucker-side of the ANC. Comparative anatomy suggests a strong link between segmentation and flexible sucker-laden arms. In the squid Doryteuthis pealeii, the arms and the sucker-rich club of the tentacles have segments, but the sucker-poor stalk of the tentacles does not. The neural modules described here provide a new template for understanding the motor control of octopus soft tissues. In addition, this finding represents the first demonstration of nervous system segmentation in a mollusc.
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Affiliation(s)
- Cassady S. Olson
- Committee on Computational Neuroscience, The University of Chicago, Chicago, IL 60637
| | - Natalie Grace Schulz
- Committee on Development, Regeneration and Stem Cell Biology, The University of Chicago, Chicago, IL 60637
| | - Clifton W. Ragsdale
- Committee on Development, Regeneration and Stem Cell Biology, The University of Chicago, Chicago, IL 60637
- Department of Neurobiology, The University of Chicago, Chicago, IL 60637
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Vilimelis Aceituno P, Dall'Osto D, Pisokas I. Theoretical principles explain the structure of the insect head direction circuit. eLife 2024; 13:e91533. [PMID: 38814703 PMCID: PMC11139481 DOI: 10.7554/elife.91533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 03/28/2024] [Indexed: 05/31/2024] Open
Abstract
To navigate their environment, insects need to keep track of their orientation. Previous work has shown that insects encode their head direction as a sinusoidal activity pattern around a ring of neurons arranged in an eight-column structure. However, it is unclear whether this sinusoidal encoding of head direction is just an evolutionary coincidence or if it offers a particular functional advantage. To address this question, we establish the basic mathematical requirements for direction encoding and show that it can be performed by many circuits, all with different activity patterns. Among these activity patterns, we prove that the sinusoidal one is the most noise-resilient, but only when coupled with a sinusoidal connectivity pattern between the encoding neurons. We compare this predicted optimal connectivity pattern with anatomical data from the head direction circuits of the locust and the fruit fly, finding that our theory agrees with experimental evidence. Furthermore, we demonstrate that our predicted circuit can emerge using Hebbian plasticity, implying that the neural connectivity does not need to be explicitly encoded in the genetic program of the insect but rather can emerge during development. Finally, we illustrate that in our theory, the consistent presence of the eight-column organisation of head direction circuits across multiple insect species is not a chance artefact but instead can be explained by basic evolutionary principles.
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Affiliation(s)
| | - Dominic Dall'Osto
- Institute of Neuroinformatics, University of Zürich and ETH ZürichZurichSwitzerland
| | - Ioannis Pisokas
- School of Informatics, University of EdinburghEdinburghUnited Kingdom
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Vinograd A, Nair A, Linderman SW, Anderson DJ. Intrinsic Dynamics and Neural Implementation of a Hypothalamic Line Attractor Encoding an Internal Behavioral State. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.21.595051. [PMID: 38826298 PMCID: PMC11142118 DOI: 10.1101/2024.05.21.595051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2024]
Abstract
Line attractors are emergent population dynamics hypothesized to encode continuous variables such as head direction and internal states. In mammals, direct evidence of neural implementation of a line attractor has been hindered by the challenge of targeting perturbations to specific neurons within contributing ensembles. Estrogen receptor type 1 (Esr1)-expressing neurons in the ventrolateral subdivision of the ventromedial hypothalamus (VMHvl) show line attractor dynamics in male mice during fighting. We hypothesized that these dynamics may encode continuous variation in the intensity of an internal aggressive state. Here, we report that these neurons also show line attractor dynamics in head-fixed mice observing aggression. We exploit this finding to identify and perturb line attractor-contributing neurons using 2-photon calcium imaging and holographic optogenetic perturbations. On-manifold perturbations demonstrate that integration and persistent activity are intrinsic properties of these neurons which drive the system along the line attractor, while transient off-manifold perturbations reveal rapid relaxation back into the attractor. Furthermore, stimulation and imaging reveal selective functional connectivity among attractor-contributing neurons. Intriguingly, individual differences among mice in line attractor stability were correlated with the degree of functional connectivity among contributing neurons. Mechanistic modelling indicates that dense subnetwork connectivity and slow neurotransmission are required to explain our empirical findings. Our work bridges circuit and manifold paradigms, shedding light on the intrinsic and operational dynamics of a behaviorally relevant mammalian line attractor.
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Affiliation(s)
- Amit Vinograd
- Division of Biology and Biological Engineering, California Institute of Technology; Pasadena, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech; Pasadena, USA
- Howard Hughes Medical Institute; Chevy Chase, USA
| | - Aditya Nair
- Division of Biology and Biological Engineering, California Institute of Technology; Pasadena, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech; Pasadena, USA
- Howard Hughes Medical Institute; Chevy Chase, USA
| | - Scott W. Linderman
- Department of Statistics, Stanford University, Stanford, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, USA
| | - David J. Anderson
- Division of Biology and Biological Engineering, California Institute of Technology; Pasadena, USA
- Tianqiao and Chrissy Chen Institute for Neuroscience Caltech; Pasadena, USA
- Howard Hughes Medical Institute; Chevy Chase, USA
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9
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Jesusanmi OO, Amin AA, Domcsek N, Knight JC, Philippides A, Nowotny T, Graham P. Investigating visual navigation using spiking neural network models of the insect mushroom bodies. Front Physiol 2024; 15:1379977. [PMID: 38841209 PMCID: PMC11151298 DOI: 10.3389/fphys.2024.1379977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 04/29/2024] [Indexed: 06/07/2024] Open
Abstract
Ants are capable of learning long visually guided foraging routes with limited neural resources. The visual scene memory needed for this behaviour is mediated by the mushroom bodies; an insect brain region important for learning and memory. In a visual navigation context, the mushroom bodies are theorised to act as familiarity detectors, guiding ants to views that are similar to those previously learned when first travelling along a foraging route. Evidence from behavioural experiments, computational studies and brain lesions all support this idea. Here we further investigate the role of mushroom bodies in visual navigation with a spiking neural network model learning complex natural scenes. By implementing these networks in GeNN-a library for building GPU accelerated spiking neural networks-we were able to test these models offline on an image database representing navigation through a complex outdoor natural environment, and also online embodied on a robot. The mushroom body model successfully learnt a large series of visual scenes (400 scenes corresponding to a 27 m route) and used these memories to choose accurate heading directions during route recapitulation in both complex environments. Through analysing our model's Kenyon cell (KC) activity, we were able to demonstrate that KC activity is directly related to the respective novelty of input images. Through conducting a parameter search we found that there is a non-linear dependence between optimal KC to visual projection neuron (VPN) connection sparsity and the length of time the model is presented with an image stimulus. The parameter search also showed training the model on lower proportions of a route generally produced better accuracy when testing on the entire route. We embodied the mushroom body model and comparator visual navigation algorithms on a Quanser Q-car robot with all processing running on an Nvidia Jetson TX2. On a 6.5 m route, the mushroom body model had a mean distance to training route (error) of 0.144 ± 0.088 m over 5 trials, which was performance comparable to standard visual-only navigation algorithms. Thus, we have demonstrated that a biologically plausible model of the ant mushroom body can navigate complex environments both in simulation and the real world. Understanding the neural basis of this behaviour will provide insight into how neural circuits are tuned to rapidly learn behaviourally relevant information from complex environments and provide inspiration for creating bio-mimetic computer/robotic systems that can learn rapidly with low energy requirements.
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Affiliation(s)
| | - Amany Azevedo Amin
- Sussex AI, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - Norbert Domcsek
- Sussex AI, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - James C. Knight
- Sussex AI, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - Andrew Philippides
- Sussex AI, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - Thomas Nowotny
- Sussex AI, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - Paul Graham
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton, United Kingdom
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Dietrich R, Waniek N, Stemmler M, Knoll A. Grid codes vs. multi-scale, multi-field place codes for space. Front Comput Neurosci 2024; 18:1276292. [PMID: 38707680 PMCID: PMC11066179 DOI: 10.3389/fncom.2024.1276292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 03/19/2024] [Indexed: 05/07/2024] Open
Abstract
Introduction Recent work on bats flying over long distances has revealed that single hippocampal cells have multiple place fields of different sizes. At the network level, a multi-scale, multi-field place cell code outperforms classical single-scale, single-field place codes, yet the performance boundaries of such a code remain an open question. In particular, it is unknown how general multi-field codes compare to a highly regular grid code, in which cells form distinct modules with different scales. Methods In this work, we address the coding properties of theoretical spatial coding models with rigorous analyses of comprehensive simulations. Starting from a multi-scale, multi-field network, we performed evolutionary optimization. The resulting multi-field networks sometimes retained the multi-scale property at the single-cell level but most often converged to a single scale, with all place fields in a given cell having the same size. We compared the results against a single-scale single-field code and a one-dimensional grid code, focusing on two main characteristics: the performance of the code itself and the dynamics of the network generating it. Results Our simulation experiments revealed that, under normal conditions, a regular grid code outperforms all other codes with respect to decoding accuracy, achieving a given precision with fewer neurons and fields. In contrast, multi-field codes are more robust against noise and lesions, such as random drop-out of neurons, given that the significantly higher number of fields provides redundancy. Contrary to our expectations, the network dynamics of all models, from the original multi-scale models before optimization to the multi-field models that resulted from optimization, did not maintain activity bumps at their original locations when a position-specific external input was removed. Discussion Optimized multi-field codes appear to strike a compromise between a place code and a grid code that reflects a trade-off between accurate positional encoding and robustness. Surprisingly, the recurrent neural network models we implemented and optimized for either multi- or single-scale, multi-field codes did not intrinsically produce a persistent "memory" of attractor states. These models, therefore, were not continuous attractor networks.
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Affiliation(s)
- Robin Dietrich
- School of Computation, Information and Technology, Technical University of Munich, Munich, Germany
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway
| | - Nicolai Waniek
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway
- Department of Mathematical Sciences, Norwegian University of Science and Technology, Trondheim, Norway
| | - Martin Stemmler
- Bernstein Center for Computational Neuroscience, Ludwig-Maximilians-Universität, Munich, Germany
| | - Alois Knoll
- School of Computation, Information and Technology, Technical University of Munich, Munich, Germany
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Yuste R, Cossart R, Yaksi E. Neuronal ensembles: Building blocks of neural circuits. Neuron 2024; 112:875-892. [PMID: 38262413 PMCID: PMC10957317 DOI: 10.1016/j.neuron.2023.12.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 06/07/2023] [Accepted: 12/13/2023] [Indexed: 01/25/2024]
Abstract
Neuronal ensembles, defined as groups of neurons displaying recurring patterns of coordinated activity, represent an intermediate functional level between individual neurons and brain areas. Novel methods to measure and optically manipulate the activity of neuronal populations have provided evidence of ensembles in the neocortex and hippocampus. Ensembles can be activated intrinsically or in response to sensory stimuli and play a causal role in perception and behavior. Here we review ensemble phenomenology, developmental origin, biophysical and synaptic mechanisms, and potential functional roles across different brain areas and species, including humans. As modular units of neural circuits, ensembles could provide a mechanistic underpinning of fundamental brain processes, including neural coding, motor planning, decision-making, learning, and adaptability.
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Affiliation(s)
- Rafael Yuste
- NeuroTechnology Center, Department of Biological Sciences, Columbia University, New York, NY, USA.
| | - Rosa Cossart
- Inserm, INMED, Turing Center for Living Systems Aix-Marseille University, Marseille, France.
| | - Emre Yaksi
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway; Koç University Research Center for Translational Medicine, Koç University School of Medicine, Istanbul, Turkey.
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Secer G, Knierim JJ, Cowan NJ. Continuous Bump Attractor Networks Require Explicit Error Coding for Gain Recalibration. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.12.579874. [PMID: 38562699 PMCID: PMC10983875 DOI: 10.1101/2024.02.12.579874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Representations of continuous variables are crucial to create internal models of the external world. A prevailing model of how the brain maintains these representations is given by continuous bump attractor networks (CBANs) in a broad range of brain functions across different areas, such as spatial navigation in hippocampal/entorhinal circuits and working memory in prefrontal cortex. Through recurrent connections, a CBAN maintains a persistent activity bump, whose peak location can vary along a neural space, corresponding to different values of a continuous variable. To track the value of a continuous variable changing over time, a CBAN updates the location of its activity bump based on inputs that encode the changes in the continuous variable (e.g., movement velocity in the case of spatial navigation)-a process akin to mathematical integration. This integration process is not perfect and accumulates error over time. For error correction, CBANs can use additional inputs providing ground-truth information about the continuous variable's correct value (e.g., visual landmarks for spatial navigation). These inputs enable the network dynamics to automatically correct any representation error. Recent experimental work on hippocampal place cells has shown that, beyond correcting errors, ground-truth inputs also fine-tune the gain of the integration process, a crucial factor that links the change in the continuous variable to the updating of the activity bump's location. However, existing CBAN models lack this plasticity, offering no insights into the neural mechanisms and representations involved in the recalibration of the integration gain. In this paper, we explore this gap by using a ring attractor network, a specific type of CBAN, to model the experimental conditions that demonstrated gain recalibration in hippocampal place cells. Our analysis reveals the necessary conditions for neural mechanisms behind gain recalibration within a CBAN. Unlike error correction, which occurs through network dynamics based on ground-truth inputs, gain recalibration requires an additional neural signal that explicitly encodes the error in the network's representation via a rate code. Finally, we propose a modified ring attractor network as an example CBAN model that verifies our theoretical findings. Combining an error-rate code with Hebbian synaptic plasticity, this model achieves recalibration of integration gain in a CBAN, ensuring accurate representation for continuous variables.
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Affiliation(s)
- Gorkem Secer
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - James J Knierim
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
- Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Noah J Cowan
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
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van der Goes MSH, Voigts J, Newman JP, Toloza EHS, Brown NJ, Murugan P, Harnett MT. Coordinated head direction representations in mouse anterodorsal thalamic nucleus and retrosplenial cortex. eLife 2024; 13:e82952. [PMID: 38470232 PMCID: PMC10932540 DOI: 10.7554/elife.82952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 02/23/2024] [Indexed: 03/13/2024] Open
Abstract
The sense of direction is critical for survival in changing environments and relies on flexibly integrating self-motion signals with external sensory cues. While the anatomical substrates involved in head direction (HD) coding are well known, the mechanisms by which visual information updates HD representations remain poorly understood. Retrosplenial cortex (RSC) plays a key role in forming coherent representations of space in mammals and it encodes a variety of navigational variables, including HD. Here, we use simultaneous two-area tetrode recording to show that RSC HD representation is nearly synchronous with that of the anterodorsal nucleus of thalamus (ADn), the obligatory thalamic relay of HD to cortex, during rotation of a prominent visual cue. Moreover, coordination of HD representations in the two regions is maintained during darkness. We further show that anatomical and functional connectivity are consistent with a strong feedforward drive of HD information from ADn to RSC, with anatomically restricted corticothalamic feedback. Together, our results indicate a concerted global HD reference update across cortex and thalamus.
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Affiliation(s)
- Marie-Sophie H van der Goes
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Jakob Voigts
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
- Open-Ephys IncAtlantaUnited States
- HHMI Janelia Research CampusAshburnUnited States
| | - Jonathan P Newman
- Open-Ephys IncAtlantaUnited States
- Department of Brain & Cognitive Sciences, Picower Institute for Learning and Memory, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Enrique HS Toloza
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
- Department of Physics, Massachusetts Institute of TechnologyCambridgeUnited States
- Harvard Medical SchoolBostonUnited States
| | - Norma J Brown
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Pranav Murugan
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Mark T Harnett
- Department of Brain & Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of TechnologyCambridgeUnited States
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14
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Brezovec BE, Berger AB, Hao YA, Chen F, Druckmann S, Clandinin TR. Mapping the neural dynamics of locomotion across the Drosophila brain. Curr Biol 2024; 34:710-726.e4. [PMID: 38242122 DOI: 10.1016/j.cub.2023.12.063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 11/13/2023] [Accepted: 12/20/2023] [Indexed: 01/21/2024]
Abstract
Locomotion engages widely distributed networks of neurons. However, our understanding of the spatial architecture and temporal dynamics of the networks that underpin walking remains incomplete. We use volumetric two-photon imaging to map neural activity associated with walking across the entire brain of Drosophila. We define spatially clustered neural signals selectively associated with changes in either forward or angular velocity, demonstrating that neurons with similar behavioral selectivity are clustered. These signals reveal distinct topographic maps in diverse brain regions involved in navigation, memory, sensory processing, and motor control, as well as regions not previously linked to locomotion. We identify temporal trajectories of neural activity that sweep across these maps, including signals that anticipate future movement, representing the sequential engagement of clusters with different behavioral specificities. Finally, we register these maps to a connectome and identify neural networks that we propose underlie the observed signals, setting a foundation for subsequent circuit dissection. Overall, our work suggests a spatiotemporal framework for the emergence and execution of complex walking maneuvers and links this brain-wide neural activity to single neurons and local circuits.
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Affiliation(s)
- Bella E Brezovec
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Andrew B Berger
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Yukun A Hao
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Feng Chen
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Shaul Druckmann
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA
| | - Thomas R Clandinin
- Department of Neurobiology, Stanford University, Fairchild D200, 299 W. Campus Drive, Stanford, CA 94305, USA.
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15
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Gort J. Emergence of Universal Computations Through Neural Manifold Dynamics. Neural Comput 2024; 36:227-270. [PMID: 38101328 DOI: 10.1162/neco_a_01631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 09/05/2023] [Indexed: 12/17/2023]
Abstract
There is growing evidence that many forms of neural computation may be implemented by low-dimensional dynamics unfolding at the population scale. However, neither the connectivity structure nor the general capabilities of these embedded dynamical processes are currently understood. In this work, the two most common formalisms of firing-rate models are evaluated using tools from analysis, topology, and nonlinear dynamics in order to provide plausible explanations for these problems. It is shown that low-rank structured connectivities predict the formation of invariant and globally attracting manifolds in all these models. Regarding the dynamics arising in these manifolds, it is proved they are topologically equivalent across the considered formalisms. This letter also shows that under the low-rank hypothesis, the flows emerging in neural manifolds, including input-driven systems, are universal, which broadens previous findings. It explores how low-dimensional orbits can bear the production of continuous sets of muscular trajectories, the implementation of central pattern generators, and the storage of memory states. These dynamics can robustly simulate any Turing machine over arbitrary bounded memory strings, virtually endowing rate models with the power of universal computation. In addition, the letter shows how the low-rank hypothesis predicts the parsimonious correlation structure observed in cortical activity. Finally, it discusses how this theory could provide a useful tool from which to study neuropsychological phenomena using mathematical methods.
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Affiliation(s)
- Joan Gort
- Facultat de Psicologia, Universitat Autònoma de Barcelona, 08193, Bellaterra, Barcelona, Spain
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16
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Oby ER, Degenhart AD, Grigsby EM, Motiwala A, McClain NT, Marino PJ, Yu BM, Batista AP. Dynamical constraints on neural population activity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.03.573543. [PMID: 38260549 PMCID: PMC10802336 DOI: 10.1101/2024.01.03.573543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
The manner in which neural activity unfolds over time is thought to be central to sensory, motor, and cognitive functions in the brain. Network models have long posited that the brain's computations involve time courses of activity that are shaped by the underlying network. A prediction from this view is that the activity time courses should be difficult to violate. We leveraged a brain-computer interface (BCI) to challenge monkeys to violate the naturally-occurring time courses of neural population activity that we observed in motor cortex. This included challenging animals to traverse the natural time course of neural activity in a time-reversed manner. Animals were unable to violate the natural time courses of neural activity when directly challenged to do so. These results provide empirical support for the view that activity time courses observed in the brain indeed reflect the underlying network-level computational mechanisms that they are believed to implement.
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17
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Brown LS, Cho JR, Bolkan SS, Nieh EH, Schottdorf M, Tank DW, Brody CD, Witten IB, Goldman MS. Neural circuit models for evidence accumulation through choice-selective sequences. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.01.555612. [PMID: 38234715 PMCID: PMC10793437 DOI: 10.1101/2023.09.01.555612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Decision making is traditionally thought to be mediated by populations of neurons whose firing rates persistently accumulate evidence across time. However, recent decision-making experiments in rodents have observed neurons across the brain that fire sequentially as a function of spatial position or time, rather than persistently, with the subset of neurons in the sequence depending on the animal's choice. We develop two new candidate circuit models, in which evidence is encoded either in the relative firing rates of two competing chains of neurons or in the network location of a stereotyped pattern ("bump") of neural activity. Encoded evidence is then faithfully transferred between neuronal populations representing different positions or times. Neural recordings from four different brain regions during a decision-making task showed that, during the evidence accumulation period, different brain regions displayed tuning curves consistent with different candidate models for evidence accumulation. This work provides mechanistic models and potential neural substrates for how graded-value information may be precisely accumulated within and transferred between neural populations, a set of computations fundamental to many cognitive operations.
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18
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Sanzeni A, Palmigiano A, Nguyen TH, Luo J, Nassi JJ, Reynolds JH, Histed MH, Miller KD, Brunel N. Mechanisms underlying reshuffling of visual responses by optogenetic stimulation in mice and monkeys. Neuron 2023; 111:4102-4115.e9. [PMID: 37865082 PMCID: PMC10841937 DOI: 10.1016/j.neuron.2023.09.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 05/05/2023] [Accepted: 09/15/2023] [Indexed: 10/23/2023]
Abstract
The ability to optogenetically perturb neural circuits opens an unprecedented window into mechanisms governing circuit function. We analyzed and theoretically modeled neuronal responses to visual and optogenetic inputs in mouse and monkey V1. In both species, optogenetic stimulation of excitatory neurons strongly modulated the activity of single neurons yet had weak or no effects on the distribution of firing rates across the population. Thus, the optogenetic inputs reshuffled firing rates across the network. Key statistics of mouse and monkey responses lay on a continuum, with mice/monkeys occupying the low-/high-rate regions, respectively. We show that neuronal reshuffling emerges generically in randomly connected excitatory/inhibitory networks, provided the coupling strength (combination of recurrent coupling and external input) is sufficient that powerful inhibitory feedback cancels the mean optogenetic input. A more realistic model, distinguishing tuned visual vs. untuned optogenetic input in a structured network, reduces the coupling strength needed to explain reshuffling.
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Affiliation(s)
- Alessandro Sanzeni
- Department of Computing Sciences, Bocconi University, 20100 Milan, Italy; Center for Theoretical Neuroscience and Mortimer B Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Department of Neurobiology, Duke University, Durham, NC 27710, USA
| | - Agostina Palmigiano
- Center for Theoretical Neuroscience and Mortimer B Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Tuan H Nguyen
- Center for Theoretical Neuroscience and Mortimer B Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Department of Physics, Columbia University, New York, NY 10027, USA
| | - Junxiang Luo
- Systems Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - Jonathan J Nassi
- Systems Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - John H Reynolds
- Systems Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - Mark H Histed
- National Institute of Mental Health Intramural Program, NIH, Bethesda, MD 20814, USA
| | - Kenneth D Miller
- Center for Theoretical Neuroscience and Mortimer B Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Department of Neuroscience, Swartz Program in Theoretical Neuroscience, Kavli Institute for Brain Science, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York City, NY 10027, USA.
| | - Nicolas Brunel
- Department of Neurobiology, Duke University, Durham, NC 27710, USA; Department of Physics, Duke University, Durham, NC 27710, USA.
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19
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Kühn T, Monasson R. Information content in continuous attractor neural networks is preserved in the presence of moderate disordered background connectivity. Phys Rev E 2023; 108:064301. [PMID: 38243526 DOI: 10.1103/physreve.108.064301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 10/04/2023] [Indexed: 01/21/2024]
Abstract
Continuous attractor neural networks (CANN) form an appealing conceptual model for the storage of information in the brain. However a drawback of CANN is that they require finely tuned interactions. We here study the effect of quenched noise in the interactions on the coding of positional information within CANN. Using the replica method we compute the Fisher information for a network with position-dependent input and recurrent connections composed of a short-range (in space) and a disordered component. We find that the loss in positional information is small for not too large disorder strength, indicating that CANN have a regime in which the advantageous effects of local connectivity on information storage outweigh the detrimental ones. Furthermore, a substantial part of this information can be extracted with a simple linear readout.
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Affiliation(s)
- Tobias Kühn
- Laboratoire de Physique de l'Ecole Normale Supérieure, CNRS UMR8023 and PSL Research, Sorbonne Université, Université Paris Cité, F-75005 Paris, France
- Institut de la Vision, Sorbonne Université, CNRS, INSERM, F-75012 Paris, France
| | - Rémi Monasson
- Laboratoire de Physique de l'Ecole Normale Supérieure, CNRS UMR8023 and PSL Research, Sorbonne Université, Université Paris Cité, F-75005 Paris, France
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20
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Goulard R, Heinze S, Webb B. Emergent spatial goals in an integrative model of the insect central complex. PLoS Comput Biol 2023; 19:e1011480. [PMID: 38109465 PMCID: PMC10760860 DOI: 10.1371/journal.pcbi.1011480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 01/02/2024] [Accepted: 12/01/2023] [Indexed: 12/20/2023] Open
Abstract
The insect central complex appears to encode and process spatial information through vector manipulation. Here, we draw on recent insights into circuit structure to fuse previous models of sensory-guided navigation, path integration and vector memory. Specifically, we propose that the allocentric encoding of location provided by path integration creates a spatially stable anchor for converging sensory signals that is relevant in multiple behavioural contexts. The allocentric reference frame given by path integration transforms a goal direction into a goal location and we demonstrate through modelling that it can enhance approach of a sensory target in noisy, cluttered environments or with temporally sparse stimuli. We further show the same circuit can improve performance in the more complex navigational task of route following. The model suggests specific functional roles for circuit elements of the central complex that helps explain their high preservation across insect species.
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Affiliation(s)
- Roman Goulard
- Lund Vision Group, Department of Biology, Lund University, Lund, Sweden
| | - Stanley Heinze
- Lund Vision Group, Department of Biology, Lund University, Lund, Sweden
| | - Barbara Webb
- Institute for Perception, Action, and Behaviour, School of Informatics, University of Edinburgh, Edinburgh, Scotland, United Kingdom
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21
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Garner D, Kind E, Nern A, Houghton L, Zhao A, Sancer G, Rubin GM, Wernet MF, Kim SS. Connectomic reconstruction predicts the functional organization of visual inputs to the navigation center of the Drosophila brain. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.29.569241. [PMID: 38076786 PMCID: PMC10705420 DOI: 10.1101/2023.11.29.569241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/22/2023]
Abstract
Many animals, including humans, navigate their surroundings by visual input, yet we understand little about how visual information is transformed and integrated by the navigation system. In Drosophila melanogaster, compass neurons in the donut-shaped ellipsoid body of the central complex generate a sense of direction by integrating visual input from ring neurons, a part of the anterior visual pathway (AVP). Here, we densely reconstruct all neurons in the AVP using FlyWire, an AI-assisted tool for analyzing electron-microscopy data. The AVP comprises four neuropils, sequentially linked by three major classes of neurons: MeTu neurons, which connect the medulla in the optic lobe to the small unit of anterior optic tubercle (AOTUsu) in the central brain; TuBu neurons, which connect the anterior optic tubercle to the bulb neuropil; and ring neurons, which connect the bulb to the ellipsoid body. Based on neuronal morphologies, connectivity between different neural classes, and the locations of synapses, we identified non-overlapping channels originating from four types of MeTu neurons, which we further divided into ten subtypes based on the presynaptic connections in medulla and postsynaptic connections in AOTUsu. To gain an objective measure of the natural variation within the pathway, we quantified the differences between anterior visual pathways from both hemispheres and between two electron-microscopy datasets. Furthermore, we infer potential visual features and the visual area from which any given ring neuron receives input by combining the connectivity of the entire AVP, the MeTu neurons' dendritic fields, and presynaptic connectivity in the optic lobes. These results provide a strong foundation for understanding how distinct visual features are extracted and transformed across multiple processing stages to provide critical information for computing the fly's sense of direction.
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Affiliation(s)
- Dustin Garner
- Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA
| | - Emil Kind
- Department of Biology, Freie Universität Berlin, Berlin, Germany
| | - Aljoscha Nern
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Lucy Houghton
- Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA
| | - Arthur Zhao
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Gizem Sancer
- Department of Biology, Freie Universität Berlin, Berlin, Germany
| | - Gerald M. Rubin
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Sung Soo Kim
- Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA
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22
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Stroud JP, Watanabe K, Suzuki T, Stokes MG, Lengyel M. Optimal information loading into working memory explains dynamic coding in the prefrontal cortex. Proc Natl Acad Sci U S A 2023; 120:e2307991120. [PMID: 37983510 PMCID: PMC10691340 DOI: 10.1073/pnas.2307991120] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 09/29/2023] [Indexed: 11/22/2023] Open
Abstract
Working memory involves the short-term maintenance of information and is critical in many tasks. The neural circuit dynamics underlying working memory remain poorly understood, with different aspects of prefrontal cortical (PFC) responses explained by different putative mechanisms. By mathematical analysis, numerical simulations, and using recordings from monkey PFC, we investigate a critical but hitherto ignored aspect of working memory dynamics: information loading. We find that, contrary to common assumptions, optimal loading of information into working memory involves inputs that are largely orthogonal, rather than similar, to the late delay activities observed during memory maintenance, naturally leading to the widely observed phenomenon of dynamic coding in PFC. Using a theoretically principled metric, we show that PFC exhibits the hallmarks of optimal information loading. We also find that optimal information loading emerges as a general dynamical strategy in task-optimized recurrent neural networks. Our theory unifies previous, seemingly conflicting theories of memory maintenance based on attractor or purely sequential dynamics and reveals a normative principle underlying dynamic coding.
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Affiliation(s)
- Jake P. Stroud
- Computational and Biological Learning Lab, Department of Engineering, University of Cambridge, CambridgeCB2 1PZ, United Kingdom
| | - Kei Watanabe
- Graduate School of Frontier Biosciences, Osaka University, Osaka565-0871, Japan
| | - Takafumi Suzuki
- Center for Information and Neural Networks, National Institute of Communication and Information Technology, Osaka565-0871, Japan
| | - Mark G. Stokes
- Department of Experimental Psychology, University of Oxford, OxfordOX2 6GG, United Kingdom
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, OxfordOX3 9DU, United Kingdom
| | - Máté Lengyel
- Computational and Biological Learning Lab, Department of Engineering, University of Cambridge, CambridgeCB2 1PZ, United Kingdom
- Center for Cognitive Computation, Department of Cognitive Science, Central European University, BudapestH-1051, Hungary
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23
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Tanaka R, Zhou B, Agrochao M, Badwan BA, Au B, Matos NCB, Clark DA. Neural mechanisms to incorporate visual counterevidence in self-movement estimation. Curr Biol 2023; 33:4960-4979.e7. [PMID: 37918398 PMCID: PMC10848174 DOI: 10.1016/j.cub.2023.10.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 10/07/2023] [Accepted: 10/09/2023] [Indexed: 11/04/2023]
Abstract
In selecting appropriate behaviors, animals should weigh sensory evidence both for and against specific beliefs about the world. For instance, animals measure optic flow to estimate and control their own rotation. However, existing models of flow detection can be spuriously triggered by visual motion created by objects moving in the world. Here, we show that stationary patterns on the retina, which constitute evidence against observer rotation, suppress inappropriate stabilizing rotational behavior in the fruit fly Drosophila. In silico experiments show that artificial neural networks (ANNs) that are optimized to distinguish observer movement from external object motion similarly detect stationarity and incorporate negative evidence. Employing neural measurements and genetic manipulations, we identified components of the circuitry for stationary pattern detection, which runs parallel to the fly's local motion and optic-flow detectors. Our results show how the fly brain incorporates negative evidence to improve heading stability, exemplifying how a compact brain exploits geometrical constraints of the visual world.
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Affiliation(s)
- Ryosuke Tanaka
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06511, USA
| | - Baohua Zhou
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA; Department of Statistics and Data Science, Yale University, New Haven, CT 06511, USA
| | - Margarida Agrochao
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA
| | - Bara A Badwan
- School of Engineering and Applied Science, Yale University, New Haven, CT 06511, USA
| | - Braedyn Au
- Department of Physics, Yale University, New Haven, CT 06511, USA
| | - Natalia C B Matos
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06511, USA
| | - Damon A Clark
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA; Department of Physics, Yale University, New Haven, CT 06511, USA; Department of Neuroscience, Yale University, New Haven, CT 06511, USA; Wu Tsai Institute, Yale University, New Haven, CT 06511, USA; Quantitative Biology Institute, Yale University, New Haven, CT 06511, USA.
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24
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Schøyen V, Pettersen MB, Holzhausen K, Fyhn M, Malthe-Sørenssen A, Lepperød ME. Coherently remapping toroidal cells but not Grid cells are responsible for path integration in virtual agents. iScience 2023; 26:108102. [PMID: 37867941 PMCID: PMC10589895 DOI: 10.1016/j.isci.2023.108102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 08/25/2023] [Accepted: 09/27/2023] [Indexed: 10/24/2023] Open
Abstract
It is widely believed that grid cells provide cues for path integration, with place cells encoding an animal's location and environmental identity. When entering a new environment, these cells remap concurrently, sparking debates about their causal relationship. Using a continuous attractor recurrent neural network, we study spatial cell dynamics in multiple environments. We investigate grid cell remapping as a function of global remapping in place-like units through random resampling of place cell centers. Dimensionality reduction techniques reveal that a subset of cells manifest a persistent torus across environments. Unexpectedly, these toroidal cells resemble band-like cells rather than high grid score units. Subsequent pruning studies reveal that toroidal cells are crucial for path integration while grid cells are not. As we extend the model to operate across many environments, we delineate its generalization boundaries, revealing challenges with modeling many environments in current models.
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Affiliation(s)
- Vemund Schøyen
- Department of Biosciences, University of Oslo, Oslo 0313, Norway
| | | | | | - Marianne Fyhn
- Department of Biosciences, University of Oslo, Oslo 0313, Norway
- Simula Research Laboratory, Norway
| | - Anders Malthe-Sørenssen
- Department of Physics, University of Oslo, Oslo 0313, Norway
- Simula Research Laboratory, Norway
| | - Mikkel Elle Lepperød
- Department of Physics, University of Oslo, Oslo 0313, Norway
- Department of Biosciences, University of Oslo, Oslo 0313, Norway
- Simula Research Laboratory, Norway
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25
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Mountoufaris G, Nair A, Yang B, Kim DW, Anderson DJ. Neuropeptide Signaling is Required to Implement a Line Attractor Encoding a Persistent Internal Behavioral State. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.01.565073. [PMID: 37961374 PMCID: PMC10635056 DOI: 10.1101/2023.11.01.565073] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
Internal states drive survival behaviors, but their neural implementation is not well understood. Recently we identified a line attractor in the ventromedial hypothalamus (VMH) that represents an internal state of aggressiveness. Line attractors can be implemented by recurrent connectivity and/or neuromodulatory signaling, but evidence for the latter is scant. Here we show that neuropeptidergic signaling is necessary for line attractor dynamics in this system, using a novel approach that integrates cell type-specific, anatomically restricted CRISPR/Cas9-based gene editing with microendoscopic calcium imaging. Co-disruption of receptors for oxytocin and vasopressin in adult VMH Esr1 + neurons that control aggression suppressed attack, reduced persistent neural activity and eliminated line attractor dynamics, while only modestly impacting neural activity and sex- or behavior-tuning. These data identify a requisite role for neuropeptidergic signaling in implementing a behaviorally relevant line attractor. Our approach should facilitate mechanistic studies in neuroscience that bridge different levels of biological function and abstraction.
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26
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Moroz LL, Romanova DY. Chemical cognition: chemoconnectomics and convergent evolution of integrative systems in animals. Anim Cogn 2023; 26:1851-1864. [PMID: 38015282 PMCID: PMC11106658 DOI: 10.1007/s10071-023-01833-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/16/2023] [Indexed: 11/29/2023]
Abstract
Neurons underpin cognition in animals. However, the roots of animal cognition are elusive from both mechanistic and evolutionary standpoints. Two conceptual frameworks both highlight and promise to address these challenges. First, we discuss evidence that animal neural and other integrative systems evolved more than once (convergent evolution) within basal metazoan lineages, giving us unique experiments by Nature for future studies. The most remarkable examples are neural systems in ctenophores and neuroid-like systems in placozoans and sponges. Second, in addition to classical synaptic wiring, a chemical connectome mediated by hundreds of signal molecules operates in tandem with neurons and is the most information-rich source of emerging properties and adaptability. The major gap-dynamic, multifunctional chemical micro-environments in nervous systems-is not understood well. Thus, novel tools and information are needed to establish mechanistic links between orchestrated, yet cell-specific, volume transmission and behaviors. Uniting what we call chemoconnectomics and analyses of the cellular bases of behavior in basal metazoan lineages arguably would form the foundation for deciphering the origins and early evolution of elementary cognition and intelligence.
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Affiliation(s)
- Leonid L Moroz
- Department of Neuroscience, University of Florida, Gainesville, USA.
- Whitney Laboratory for Marine Bioscience, University of Florida, Saint Augustine, USA.
| | - Daria Y Romanova
- Institute of Higher Nervous Activity and Neurophysiology of RAS, Moscow, Russia
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27
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Piatkevich KD, Boyden ES. Optogenetic control of neural activity: The biophysics of microbial rhodopsins in neuroscience. Q Rev Biophys 2023; 57:e1. [PMID: 37831008 DOI: 10.1017/s0033583523000033] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
Optogenetics, the use of microbial rhodopsins to make the electrical activity of targeted neurons controllable by light, has swept through neuroscience, enabling thousands of scientists to study how specific neuron types contribute to behaviors and pathologies, and how they might serve as novel therapeutic targets. By activating a set of neurons, one can probe what functions they can initiate or sustain, and by silencing a set of neurons, one can probe the functions they are necessary for. We here review the biophysics of these molecules, asking why they became so useful in neuroscience for the study of brain circuitry. We review the history of the field, including early thinking, early experiments, applications of optogenetics, pre-optogenetics targeted neural control tools, and the history of discovering and characterizing microbial rhodopsins. We then review the biophysical attributes of rhodopsins that make them so useful to neuroscience - their classes and structure, their photocycles, their photocurrent magnitudes and kinetics, their action spectra, and their ion selectivity. Our hope is to convey to the reader how specific biophysical properties of these molecules made them especially useful to neuroscientists for a difficult problem - the control of high-speed electrical activity, with great precision and ease, in the brain.
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Affiliation(s)
- Kiryl D Piatkevich
- School of Life Sciences, Westlake University, Hangzhou, China
- Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, China
- Institute of Basic Medical Sciences, Westlake Institute for Advanced Study, Hangzhou, China
| | - Edward S Boyden
- McGovern Institute and Koch Institute, Departments of Brain and Cognitive Sciences, Media Arts and Sciences, and Biological Engineering, K. Lisa Yang Center for Bionics and Center for Neurobiological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
- Howard Hughes Medical Institute, Cambridge, MA, USA
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28
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Ma H, Qi Y, Gong P, Zhang J, Lu WL, Feng J. Self-Organization of Nonlinearly Coupled Neural Fluctuations Into Synergistic Population Codes. Neural Comput 2023; 35:1820-1849. [PMID: 37725705 DOI: 10.1162/neco_a_01612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 06/26/2023] [Indexed: 09/21/2023]
Abstract
Neural activity in the brain exhibits correlated fluctuations that may strongly influence the properties of neural population coding. However, how such correlated neural fluctuations may arise from the intrinsic neural circuit dynamics and subsequently affect the computational properties of neural population activity remains poorly understood. The main difficulty lies in resolving the nonlinear coupling between correlated fluctuations with the overall dynamics of the system. In this study, we investigate the emergence of synergistic neural population codes from the intrinsic dynamics of correlated neural fluctuations in a neural circuit model capturing realistic nonlinear noise coupling of spiking neurons. We show that a rich repertoire of spatial correlation patterns naturally emerges in a bump attractor network and further reveals the dynamical regime under which the interplay between differential and noise correlations leads to synergistic codes. Moreover, we find that negative correlations may induce stable bound states between two bumps, a phenomenon previously unobserved in firing rate models. These noise-induced effects of bump attractors lead to a number of computational advantages including enhanced working memory capacity and efficient spatiotemporal multiplexing and can account for a range of cognitive and behavioral phenomena related to working memory. This study offers a dynamical approach to investigating realistic correlated neural fluctuations and insights to their roles in cortical computations.
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Affiliation(s)
- Hengyuan Ma
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
| | - Yang Qi
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Pulin Gong
- School of Physics, University of Sydney, Sydney, NSW 2006, Australia
| | - Jie Zhang
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Wen-Lian Lu
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Jianfeng Feng
- Institute of Science and Technology for Brain-inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
- Department of Computer Science, University of Warwick, Coventry, CV4 7AL, U.K.
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29
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Cruz TL, Chiappe ME. Multilevel visuomotor control of locomotion in Drosophila. Curr Opin Neurobiol 2023; 82:102774. [PMID: 37651855 DOI: 10.1016/j.conb.2023.102774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 07/26/2023] [Accepted: 08/01/2023] [Indexed: 09/02/2023]
Abstract
Vision is critical for the control of locomotion, but the underlying neural mechanisms by which visuomotor circuits contribute to the movement of the body through space are yet not well understood. Locomotion engages multiple control systems, forming distinct interacting "control levels" driven by the activity of distributed and overlapping circuits. Therefore, a comprehensive understanding of the mechanisms underlying locomotion control requires the consideration of all control levels and their necessary coordination. Due to their small size and the wide availability of experimental tools, Drosophila has become an important model system to study this coordination. Traditionally, insect locomotion has been divided into studying either the biomechanics and local control of limbs, or navigation and course control. However, recent developments in tracking techniques, and physiological and genetic tools in Drosophila have prompted researchers to examine multilevel control coordination in flight and walking.
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Affiliation(s)
- Tomás L Cruz
- Champalimaud Research, Champalimaud Centre for the Unknown, 1400-038 Lisbon, Portugal
| | - M Eugenia Chiappe
- Champalimaud Research, Champalimaud Centre for the Unknown, 1400-038 Lisbon, Portugal.
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30
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Kunin AB, Guo J, Bassler KE, Pitkow X, Josić K. Hierarchical Modular Structure of the Drosophila Connectome. J Neurosci 2023; 43:6384-6400. [PMID: 37591738 PMCID: PMC10501013 DOI: 10.1523/jneurosci.0134-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Revised: 07/20/2023] [Accepted: 07/24/2023] [Indexed: 08/19/2023] Open
Abstract
The structure of neural circuitry plays a crucial role in brain function. Previous studies of brain organization generally had to trade off between coarse descriptions at a large scale and fine descriptions on a small scale. Researchers have now reconstructed tens to hundreds of thousands of neurons at synaptic resolution, enabling investigations into the interplay between global, modular organization, and cell type-specific wiring. Analyzing data of this scale, however, presents unique challenges. To address this problem, we applied novel community detection methods to analyze the synapse-level reconstruction of an adult female Drosophila melanogaster brain containing >20,000 neurons and 10 million synapses. Using a machine-learning algorithm, we find the most densely connected communities of neurons by maximizing a generalized modularity density measure. We resolve the community structure at a range of scales, from large (on the order of thousands of neurons) to small (on the order of tens of neurons). We find that the network is organized hierarchically, and larger-scale communities are composed of smaller-scale structures. Our methods identify well-known features of the fly brain, including its sensory pathways. Moreover, focusing on specific brain regions, we are able to identify subnetworks with distinct connectivity types. For example, manual efforts have identified layered structures in the fan-shaped body. Our methods not only automatically recover this layered structure, but also resolve finer connectivity patterns to downstream and upstream areas. We also find a novel modular organization of the superior neuropil, with distinct clusters of upstream and downstream brain regions dividing the neuropil into several pathways. These methods show that the fine-scale, local network reconstruction made possible by modern experimental methods are sufficiently detailed to identify the organization of the brain across scales, and enable novel predictions about the structure and function of its parts.Significance Statement The Hemibrain is a partial connectome of an adult female Drosophila melanogaster brain containing >20,000 neurons and 10 million synapses. Analyzing the structure of a network of this size requires novel and efficient computational tools. We applied a new community detection method to automatically uncover the modular structure in the Hemibrain dataset by maximizing a generalized modularity measure. This allowed us to resolve the community structure of the fly hemibrain at a range of spatial scales revealing a hierarchical organization of the network, where larger-scale modules are composed of smaller-scale structures. The method also allowed us to identify subnetworks with distinct cell and connectivity structures, such as the layered structures in the fan-shaped body, and the modular organization of the superior neuropil. Thus, network analysis methods can be adopted to the connectomes being reconstructed using modern experimental methods to reveal the organization of the brain across scales. This supports the view that such connectomes will allow us to uncover the organizational structure of the brain, which can ultimately lead to a better understanding of its function.
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Affiliation(s)
- Alexander B Kunin
- Department of Mathematics, Creighton University, Omaha, Nebraska 68178
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas 77030
| | - Jiahao Guo
- Department of Physics, University of Houston, Houston, Texas 77204
- Texas Center for Superconductivity, University of Houston, Houston, Texas 77204
| | - Kevin E Bassler
- Department of Physics, University of Houston, Houston, Texas 77204
- Texas Center for Superconductivity, University of Houston, Houston, Texas 77204
- Department of Mathematics, University of Houston, Houston, Texas 77204
| | - Xaq Pitkow
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas 77030
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas 77005
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas
- Neuroscience Institute, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213
- Department of Machine Learning, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213
| | - Krešimir Josić
- Department of Mathematics, University of Houston, Houston, Texas 77204
- Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204
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31
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Singh P, Aleman A, Omoto JJ, Nguyen BC, Kandimalla P, Hartenstein V, Donlea JM. Examining Sleep Modulation by Drosophila Ellipsoid Body Neurons. eNeuro 2023; 10:ENEURO.0281-23.2023. [PMID: 37679041 PMCID: PMC10523840 DOI: 10.1523/eneuro.0281-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Accepted: 08/10/2023] [Indexed: 09/09/2023] Open
Abstract
Recent work in Drosophila has uncovered several neighboring classes of sleep-regulatory neurons within the central complex. However, the logic of connectivity and network motifs remains limited by the incomplete examination of relevant cell types. Using a recent genetic-anatomic classification of ellipsoid body ring neurons, we conducted a thermogenetic screen in female flies to assess sleep/wake behavior and identified two wake-promoting drivers that label ER3d neurons and two sleep-promoting drivers that express in ER3m cells. We then used intersectional genetics to refine driver expression patterns. Activation of ER3d cells shortened sleep bouts, suggesting a key role in sleep maintenance. While sleep-promoting drivers from our mini-screen label overlapping ER3m neurons, intersectional strategies cannot rule out sleep regulatory roles for additional neurons in their expression patterns. Suppressing GABA synthesis in ER3m neurons prevents postinjury sleep, and GABAergic ER3d cells are required for thermogenetically induced wakefulness. Finally, we use an activity-dependent fluorescent reporter for putative synaptic contacts to embed these neurons within the known sleep-regulatory network. ER3m and ER3d neurons may receive connections from wake-active Helicon/ExR1 cells, and ER3m neurons likely inhibit ER3d neurons. Together, these data suggest a neural mechanism by which previously uncharacterized circuit elements stabilize sleep-wake states.
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Affiliation(s)
- Prabhjit Singh
- Department of Neurobiology, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, California 90095
| | - Abigail Aleman
- Department of Neurobiology, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, California 90095
- Molecular, Cellular & Integrative Physiology Interdepartmental Program, University of California-Los Angeles, Los Angeles, California 90095
| | - Jaison Jiro Omoto
- Department of Neurobiology, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, California 90095
| | - Bao-Chau Nguyen
- Department of Molecular, Cell, & Developmental Biology, University of California-Los Angeles, Los Angeles, California 90095
| | - Pratyush Kandimalla
- Department of Molecular, Cell, & Developmental Biology, University of California-Los Angeles, Los Angeles, California 90095
| | - Volker Hartenstein
- Department of Molecular, Cell, & Developmental Biology, University of California-Los Angeles, Los Angeles, California 90095
| | - Jeffrey M Donlea
- Department of Neurobiology, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, California 90095
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32
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Sun X, Fu Q, Peng J, Yue S. An insect-inspired model facilitating autonomous navigation by incorporating goal approaching and collision avoidance. Neural Netw 2023; 165:106-118. [PMID: 37285728 DOI: 10.1016/j.neunet.2023.05.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 03/17/2023] [Accepted: 05/17/2023] [Indexed: 06/09/2023]
Abstract
Being one of the most fundamental and crucial capacity of robots and animals, autonomous navigation that consists of goal approaching and collision avoidance enables completion of various tasks while traversing different environments. In light of the impressive navigational abilities of insects despite their tiny brains compared to mammals, the idea of seeking solutions from insects for the two key problems of navigation, i.e., goal approaching and collision avoidance, has fascinated researchers and engineers for many years. However, previous bio-inspired studies have focused on merely one of these two problems at one time. Insect-inspired navigation algorithms that synthetically incorporate both goal approaching and collision avoidance, and studies that investigate the interactions of these two mechanisms in the context of sensory-motor closed-loop autonomous navigation are lacking. To fill this gap, we propose an insect-inspired autonomous navigation algorithm to integrate the goal approaching mechanism as the global working memory inspired by the sweat bee's path integration (PI) mechanism, and the collision avoidance model as the local immediate cue built upon the locust's lobula giant movement detector (LGMD) model. The presented algorithm is utilized to drive agents to complete navigation task in a sensory-motor closed-loop manner within a bounded static or dynamic environment. Simulation results demonstrate that the synthetic algorithm is capable of guiding the agent to complete challenging navigation tasks in a robust and efficient way. This study takes the first tentative step to integrate the insect-like navigation mechanisms with different functionalities (i.e., global goal and local interrupt) into a coordinated control system that future research avenues could build upon.
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Affiliation(s)
- Xuelong Sun
- School of Mathematics and Information Science, Guangzhou University, Guangzhou, 510006, China; Machine Life and Intelligence Research Centre, Guangzhou University, Guangzhou, 510006, China
| | - Qinbing Fu
- School of Mathematics and Information Science, Guangzhou University, Guangzhou, 510006, China; Machine Life and Intelligence Research Centre, Guangzhou University, Guangzhou, 510006, China
| | - Jigen Peng
- School of Mathematics and Information Science, Guangzhou University, Guangzhou, 510006, China; Machine Life and Intelligence Research Centre, Guangzhou University, Guangzhou, 510006, China.
| | - Shigang Yue
- Computational Intelligence Lab (CIL)/School of Computer Science, University of Lincoln, Lincoln, LN6 7TS, United Kingdom; School of Computing and Mathematical Sciences, University of Leicester, Leicester, LE1 7RH, United Kingdom.
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33
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Tanaka R, Zhou B, Agrochao M, Badwan BA, Au B, Matos NCB, Clark DA. Neural mechanisms to incorporate visual counterevidence in self motion estimation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.01.04.522814. [PMID: 36711843 PMCID: PMC9881891 DOI: 10.1101/2023.01.04.522814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
In selecting appropriate behaviors, animals should weigh sensory evidence both for and against specific beliefs about the world. For instance, animals measure optic flow to estimate and control their own rotation. However, existing models of flow detection can confuse the movement of external objects with genuine self motion. Here, we show that stationary patterns on the retina, which constitute negative evidence against self rotation, are used by the fruit fly Drosophila to suppress inappropriate stabilizing rotational behavior. In silico experiments show that artificial neural networks optimized to distinguish self and world motion similarly detect stationarity and incorporate negative evidence. Employing neural measurements and genetic manipulations, we identified components of the circuitry for stationary pattern detection, which runs parallel to the fly's motion- and optic flow-detectors. Our results exemplify how the compact brain of the fly incorporates negative evidence to improve heading stability, exploiting geometrical constraints of the visual world.
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Affiliation(s)
- Ryosuke Tanaka
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06511, USA
- Present Address: Institute of Neuroscience, Technical University of Munich, Munich 80802, Germany
| | - Baohua Zhou
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA
- Department of Statistics and Data Science, Yale University, New Haven, CT 06511, USA
| | - Margarida Agrochao
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA
| | - Bara A. Badwan
- School of Engineering and Applied Science, Yale University, New Haven, CT 06511, USA
| | - Braedyn Au
- Department of Physics, Yale University, New Haven, CT 06511, USA
| | - Natalia C. B. Matos
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06511, USA
| | - Damon A. Clark
- Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06511, USA
- Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA
- Department of Physics, Yale University, New Haven, CT 06511, USA
- Department of Neuroscience, Yale University, New Haven, CT 06511, USA
- Wu Tsai Institute, Yale University, New Haven, CT 06511, USA
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34
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Wilson RI. Neural Networks for Navigation: From Connections to Computations. Annu Rev Neurosci 2023; 46:403-423. [PMID: 37428603 DOI: 10.1146/annurev-neuro-110920-032645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2023]
Abstract
Many animals can navigate toward a goal they cannot see based on an internal representation of that goal in the brain's spatial maps. These maps are organized around networks with stable fixed-point dynamics (attractors), anchored to landmarks, and reciprocally connected to motor control. This review summarizes recent progress in understanding these networks, focusing on studies in arthropods. One factor driving recent progress is the availability of the Drosophila connectome; however, it is increasingly clear that navigation depends on ongoing synaptic plasticity in these networks. Functional synapses appear to be continually reselected from the set of anatomical potential synapses based on the interaction of Hebbian learning rules, sensory feedback, attractor dynamics, and neuromodulation. This can explain how the brain's maps of space are rapidly updated; it may also explain how the brain can initialize goals as stable fixed points for navigation.
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Affiliation(s)
- Rachel I Wilson
- Department of Neurobiology, Harvard Medical School, Cambridge, Massachusetts, USA;
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35
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Steele TJ, Lanz AJ, Nagel KI. Olfactory navigation in arthropods. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023; 209:467-488. [PMID: 36658447 PMCID: PMC10354148 DOI: 10.1007/s00359-022-01611-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 12/26/2022] [Accepted: 12/31/2022] [Indexed: 01/21/2023]
Abstract
Using odors to find food and mates is one of the most ancient and highly conserved behaviors. Arthropods from flies to moths to crabs use broadly similar strategies to navigate toward odor sources-such as integrating flow information with odor information, comparing odor concentration across sensors, and integrating odor information over time. Because arthropods share many homologous brain structures-antennal lobes for processing olfactory information, mechanosensors for processing flow, mushroom bodies (or hemi-ellipsoid bodies) for associative learning, and central complexes for navigation, it is likely that these closely related behaviors are mediated by conserved neural circuits. However, differences in the types of odors they seek, the physics of odor dispersal, and the physics of locomotion in water, air, and on substrates mean that these circuits must have adapted to generate a wide diversity of odor-seeking behaviors. In this review, we discuss common strategies and specializations observed in olfactory navigation behavior across arthropods, and review our current knowledge about the neural circuits subserving this behavior. We propose that a comparative study of arthropod nervous systems may provide insight into how a set of basic circuit structures has diversified to generate behavior adapted to different environments.
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Affiliation(s)
- Theresa J Steele
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA
| | - Aaron J Lanz
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA
| | - Katherine I Nagel
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA.
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36
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Ai H, Farina WM. In search of behavioral and brain processes involved in honey bee dance communication. Front Behav Neurosci 2023; 17:1140657. [PMID: 37456809 PMCID: PMC10342208 DOI: 10.3389/fnbeh.2023.1140657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 06/16/2023] [Indexed: 07/18/2023] Open
Abstract
Honey bees represent an iconic model animal for studying the underlying mechanisms affecting advanced sensory and cognitive abilities during communication among colony mates. After von Frisch discovered the functional value of the waggle dance, this complex motor pattern led ethologists and neuroscientists to study its neural mechanism, behavioral significance, and implications for a collective organization. Recent studies have revealed some of the mechanisms involved in this symbolic form of communication by using conventional behavioral and pharmacological assays, neurobiological studies, comprehensive molecular and connectome analyses, and computational models. This review summarizes several critical behavioral and brain processes and mechanisms involved in waggle dance communication. We focus on the role of neuromodulators in the dancer and the recruited follower, the interneurons and their related processing in the first mechano-processing, and the computational navigation centers of insect brains.
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Affiliation(s)
- Hiroyuki Ai
- Department of Earth System Science, Fukuoka University, Fukuoka, Japan
| | - Walter M. Farina
- Laboratorio de Insectos Sociales, Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
- Instituto de Fisiología, Biología Molecular y Neurociencias, CONICET-UBA, Buenos Aires, Argentina
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37
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Mitchell R, Shaverdian S, Dacke M, Webb B. A model of cue integration as vector summation in the insect brain. Proc Biol Sci 2023; 290:20230767. [PMID: 37357865 PMCID: PMC10291719 DOI: 10.1098/rspb.2023.0767] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 05/30/2023] [Indexed: 06/27/2023] Open
Abstract
Ball-rolling dung beetles are known to integrate multiple cues in order to facilitate their straight-line orientation behaviour. Recent work has suggested that orientation cues are integrated according to a vector sum, that is, compass cues are represented by vectors and summed to give a combined orientation estimate. Further, cue weight (vector magnitude) appears to be set according to cue reliability. This is consistent with the popular Bayesian view of cue integration: cues are integrated to reduce or minimize an agent's uncertainty about the external world. Integration of orientation cues is believed to occur at the input to the insect central complex. Here, we demonstrate that a model of the head direction circuit of the central complex, including plasticity in input synapses, can act as a substrate for cue integration as vector summation. Further, we show that cue influence is not necessarily driven by cue reliability. Finally, we present a dung beetle behavioural experiment which, in combination with simulation, strongly suggests that these beetles do not weight cues according to reliability. We suggest an alternative strategy whereby cues are weighted according to relative contrast, which can also explain previous results.
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Affiliation(s)
- Robert Mitchell
- Institute for Perception, Action, and Behaviour, The University of Edinburgh School of Informatics, Edinburgh, Edinburgh EH8 9AB, UK
| | - Shahrzad Shaverdian
- Lund Vision Group, Department of Biology, Lund University, Lund SE-223 62, Sweden
| | - Marie Dacke
- Lund Vision Group, Department of Biology, Lund University, Lund SE-223 62, Sweden
| | - Barbara Webb
- Institute for Perception, Action, and Behaviour, The University of Edinburgh School of Informatics, Edinburgh, Edinburgh EH8 9AB, UK
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38
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Abstract
Using functional imaging and neural circuit reconstructions, a recent study reveals head direction neurons in the anterior hindbrain of zebrafish that resemble insect head-direction cells to a surprising degree.
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Affiliation(s)
- Stanley Heinze
- Lund University, Lund Vision Group and NanoLund, Lund, Sweden.
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39
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Titova AV, Kau BE, Tibor S, Mach J, Vo-Doan TT, Wittlinger M, Straw AD. Displacement experiments provide evidence for path integration in Drosophila. J Exp Biol 2023; 226:jeb245289. [PMID: 37226998 PMCID: PMC10281513 DOI: 10.1242/jeb.245289] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 05/16/2023] [Indexed: 05/26/2023]
Abstract
Like many other animals, insects are capable of returning to previously visited locations using path integration, which is a memory of travelled direction and distance. Recent studies suggest that Drosophila can also use path integration to return to a food reward. However, the existing experimental evidence for path integration in Drosophila has a potential confound: pheromones deposited at the site of reward might enable flies to find previously rewarding locations even without memory. Here, we show that pheromones can indeed cause naïve flies to accumulate where previous flies had been rewarded in a navigation task. Therefore, we designed an experiment to determine if flies can use path integration memory despite potential pheromonal cues by displacing the flies shortly after an optogenetic reward. We found that rewarded flies returned to the location predicted by a memory-based model. Several analyses are consistent with path integration as the mechanism by which flies returned to the reward. We conclude that although pheromones are often important in fly navigation and must be carefully controlled for in future experiments, Drosophila may indeed be capable of performing path integration.
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Affiliation(s)
- Anna V. Titova
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Benedikt E. Kau
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Shir Tibor
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Jana Mach
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - T. Thang Vo-Doan
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Matthias Wittlinger
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Andrew D. Straw
- Institute of Biology I, Faculty of Biology, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
- Bernstein Center Freiburg, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
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40
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Langdon C, Genkin M, Engel TA. A unifying perspective on neural manifolds and circuits for cognition. Nat Rev Neurosci 2023; 24:363-377. [PMID: 37055616 PMCID: PMC11058347 DOI: 10.1038/s41583-023-00693-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/06/2023] [Indexed: 04/15/2023]
Abstract
Two different perspectives have informed efforts to explain the link between the brain and behaviour. One approach seeks to identify neural circuit elements that carry out specific functions, emphasizing connectivity between neurons as a substrate for neural computations. Another approach centres on neural manifolds - low-dimensional representations of behavioural signals in neural population activity - and suggests that neural computations are realized by emergent dynamics. Although manifolds reveal an interpretable structure in heterogeneous neuronal activity, finding the corresponding structure in connectivity remains a challenge. We highlight examples in which establishing the correspondence between low-dimensional activity and connectivity has been possible, unifying the neural manifold and circuit perspectives. This relationship is conspicuous in systems in which the geometry of neural responses mirrors their spatial layout in the brain, such as the fly navigational system. Furthermore, we describe evidence that, in systems in which neural responses are heterogeneous, the circuit comprises interactions between activity patterns on the manifold via low-rank connectivity. We suggest that unifying the manifold and circuit approaches is important if we are to be able to causally test theories about the neural computations that underlie behaviour.
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Affiliation(s)
- Christopher Langdon
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
| | - Mikhail Genkin
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
| | - Tatiana A Engel
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
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41
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Currier TA, Pang MM, Clandinin TR. Visual processing in the fly, from photoreceptors to behavior. Genetics 2023; 224:iyad064. [PMID: 37128740 PMCID: PMC10213501 DOI: 10.1093/genetics/iyad064] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 03/22/2023] [Indexed: 05/03/2023] Open
Abstract
Originally a genetic model organism, the experimental use of Drosophila melanogaster has grown to include quantitative behavioral analyses, sophisticated perturbations of neuronal function, and detailed sensory physiology. A highlight of these developments can be seen in the context of vision, where pioneering studies have uncovered fundamental and generalizable principles of sensory processing. Here we begin with an overview of vision-guided behaviors and common methods for probing visual circuits. We then outline the anatomy and physiology of brain regions involved in visual processing, beginning at the sensory periphery and ending with descending motor control. Areas of focus include contrast and motion detection in the optic lobe, circuits for visual feature selectivity, computations in support of spatial navigation, and contextual associative learning. Finally, we look to the future of fly visual neuroscience and discuss promising topics for further study.
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Affiliation(s)
- Timothy A Currier
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Michelle M Pang
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Thomas R Clandinin
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA
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42
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Petrucco L, Lavian H, Wu YK, Svara F, Štih V, Portugues R. Neural dynamics and architecture of the heading direction circuit in zebrafish. Nat Neurosci 2023; 26:765-773. [PMID: 37095397 PMCID: PMC10166860 DOI: 10.1038/s41593-023-01308-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 03/16/2023] [Indexed: 04/26/2023]
Abstract
Animals generate neural representations of their heading direction. Notably, in insects, heading direction is topographically represented by the activity of neurons in the central complex. Although head direction cells have been found in vertebrates, the connectivity that endows them with their properties is unknown. Using volumetric lightsheet imaging, we find a topographical representation of heading direction in a neuronal network in the zebrafish anterior hindbrain, where a sinusoidal bump of activity rotates following directional swims of the fish and is otherwise stable over many seconds. Electron microscopy reconstructions show that, although the cell bodies are located in a dorsal region, these neurons arborize in the interpeduncular nucleus, where reciprocal inhibitory connectivity stabilizes the ring attractor network that encodes heading. These neurons resemble those found in the fly central complex, showing that similar circuit architecture principles may underlie the representation of heading direction across the animal kingdom and paving the way to an unprecedented mechanistic understanding of these networks in vertebrates.
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Affiliation(s)
- Luigi Petrucco
- Institute of Neuroscience, Technical University of Munich, Munich, Germany
- Graduate School of Systemic Neurosciences, Ludwig-Maximilian University, Munich, Germany
| | - Hagar Lavian
- Institute of Neuroscience, Technical University of Munich, Munich, Germany
| | - You Kure Wu
- Institute of Neuroscience, Technical University of Munich, Munich, Germany
| | - Fabian Svara
- Department of Computational Neuroethology, Max Planck Institute for Neurobiology of Behavior - caesar, Bonn, Germany
| | | | - Ruben Portugues
- Institute of Neuroscience, Technical University of Munich, Munich, Germany.
- Munich Cluster of Systems Neurology (SyNergy), Munich, Germany.
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Verbe A, Martinez D, Viollet S. Sensory fusion in the hoverfly righting reflex. Sci Rep 2023; 13:6138. [PMID: 37061548 PMCID: PMC10105705 DOI: 10.1038/s41598-023-33302-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 04/11/2023] [Indexed: 04/17/2023] Open
Abstract
We study how falling hoverflies use sensory cues to trigger appropriate roll righting behavior. Before being released in a free fall, flies were placed upside-down with their legs contacting the substrate. The prior leg proprioceptive information about their initial orientation sufficed for the flies to right themselves properly. However, flies also use visual and antennal cues to recover faster and disambiguate sensory conflicts. Surprisingly, in one of the experimental conditions tested, hoverflies flew upside-down while still actively flapping their wings. In all the other conditions, flies were able to right themselves using two roll dynamics: fast ([Formula: see text]50ms) and slow ([Formula: see text]110ms) in the presence of consistent and conflicting cues, respectively. These findings suggest that a nonlinear sensory integration of the three types of sensory cues occurred. A ring attractor model was developed and discussed to account for this cue integration process.
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Affiliation(s)
- Anna Verbe
- Aix-Marseille Université, CNRS, ISM, 13009, Marseille, France
- PNI, Princeton University, Washington Road, Princeton, NJ, 08540, USA
| | - Dominique Martinez
- Aix-Marseille Université, CNRS, ISM, 13009, Marseille, France
- Université de Lorraine, CNRS, LORIA, 54000, Nancy, France
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Sit KK, Goard MJ. Coregistration of heading to visual cues in retrosplenial cortex. Nat Commun 2023; 14:1992. [PMID: 37031198 PMCID: PMC10082791 DOI: 10.1038/s41467-023-37704-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 03/28/2023] [Indexed: 04/10/2023] Open
Abstract
Spatial cognition depends on an accurate representation of orientation within an environment. Head direction cells in distributed brain regions receive a range of sensory inputs, but visual input is particularly important for aligning their responses to environmental landmarks. To investigate how population-level heading responses are aligned to visual input, we recorded from retrosplenial cortex (RSC) of head-fixed mice in a moving environment using two-photon calcium imaging. We show that RSC neurons are tuned to the animal's relative orientation in the environment, even in the absence of head movement. Next, we found that RSC receives functionally distinct projections from visual and thalamic areas and contains several functional classes of neurons. While some functional classes mirror RSC inputs, a newly discovered class coregisters visual and thalamic signals. Finally, decoding analyses reveal unique contributions to heading from each class. Our results suggest an RSC circuit for anchoring heading representations to environmental visual landmarks.
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Affiliation(s)
- Kevin K Sit
- Department of Psychological and Brain Sciences University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Michael J Goard
- Department of Psychological and Brain Sciences University of California, Santa Barbara, Santa Barbara, CA, 93106, USA.
- Department of Molecular, Cellular, and Developmental Biology University of California, Santa Barbara, Santa Barbara, CA, 93106, USA.
- Neuroscience Research Institute University of California Santa Barbara, Santa Barbara, CA, 93106, USA.
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45
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Libedinsky C. Comparing representations and computations in single neurons versus neural networks. Trends Cogn Sci 2023; 27:517-527. [PMID: 37005114 DOI: 10.1016/j.tics.2023.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 03/09/2023] [Accepted: 03/10/2023] [Indexed: 04/03/2023]
Abstract
Single-neuron-level explanations have been the gold standard in neuroscience for decades. Recently, however, neural-network-level explanations have become increasingly popular. This increase in popularity is driven by the fact that the analysis of neural networks can solve problems that cannot be addressed by analyzing neurons independently. In this opinion article, I argue that while both frameworks employ the same general logic to link physical and mental phenomena, in many cases the neural network framework provides better explanatory objects to understand representations and computations related to mental phenomena. I discuss what constitutes a mechanistic explanation in neural systems, provide examples, and conclude by highlighting a number of the challenges and considerations associated with the use of analyses of neural networks to study brain function.
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Ajabi Z, Keinath AT, Wei XX, Brandon MP. Population dynamics of head-direction neurons during drift and reorientation. Nature 2023; 615:892-899. [PMID: 36949190 PMCID: PMC10060160 DOI: 10.1038/s41586-023-05813-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 02/03/2023] [Indexed: 03/24/2023]
Abstract
The head direction (HD) system functions as the brain's internal compass1,2, classically formalized as a one-dimensional ring attractor network3,4. In contrast to a globally consistent magnetic compass, the HD system does not have a universal reference frame. Instead, it anchors to local cues, maintaining a stable offset when cues rotate5-8 and drifting in the absence of referents5,8-10. However, questions about the mechanisms that underlie anchoring and drift remain unresolved and are best addressed at the population level. For example, the extent to which the one-dimensional description of population activity holds under conditions of reorientation and drift is unclear. Here we performed population recordings of thalamic HD cells using calcium imaging during controlled rotations of a visual landmark. Across experiments, population activity varied along a second dimension, which we refer to as network gain, especially under circumstances of cue conflict and ambiguity. Activity along this dimension predicted realignment and drift dynamics, including the speed of network realignment. In the dark, network gain maintained a 'memory trace' of the previously displayed landmark. Further experiments demonstrated that the HD network returned to its baseline orientation after brief, but not longer, exposures to a rotated cue. This experience dependence suggests that memory of previous associations between HD neurons and allocentric cues is maintained and influences the internal HD representation. Building on these results, we show that continuous rotation of a visual landmark induced rotation of the HD representation that persisted in darkness, demonstrating experience-dependent recalibration of the HD system. Finally, we propose a computational model to formalize how the neural compass flexibly adapts to changing environmental cues to maintain a reliable representation of HD. These results challenge classical one-dimensional interpretations of the HD system and provide insights into the interactions between this system and the cues to which it anchors.
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Affiliation(s)
- Zaki Ajabi
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, Verdun, Quebec, Canada.
- Integrated Program in Neuroscience, McGill University, Montreal, Quebec, Canada.
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
| | - Alexandra T Keinath
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, Verdun, Quebec, Canada
| | - Xue-Xin Wei
- Department of Neuroscience, University of Texas at Austin, Austin, TX, USA
- Department of Psychology, University of Texas at Austin, Austin, TX, USA
- Center for Perceptual Systems, University of Texas at Austin, Austin, TX, USA
- Center for Theoretical and Computational Neuroscience, University of Texas at Austin, Austin, TX, USA
| | - Mark P Brandon
- Department of Psychiatry, Douglas Hospital Research Centre, McGill University, Verdun, Quebec, Canada.
- Integrated Program in Neuroscience, McGill University, Montreal, Quebec, Canada.
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Yoon HG, Kim P. STDP-based associative memory formation and retrieval. J Math Biol 2023; 86:49. [PMID: 36826758 DOI: 10.1007/s00285-023-01883-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 12/11/2022] [Accepted: 01/31/2023] [Indexed: 02/25/2023]
Abstract
Spike-timing-dependent plasticity (STDP) is a biological process in which the precise order and timing of neuronal spikes affect the degree of synaptic modification. While there has been numerous research focusing on the role of STDP in neural coding, the functional implications of STDP at the macroscopic level in the brain have not been fully explored yet. In this work, we propose a neurodynamical model based on STDP that renders storage and retrieval of a group of associative memories. We showed that the function of STDP at the macroscopic level is to form a "memory plane" in the neural state space which dynamically encodes high dimensional data. We derived the analytic relation between the input, the memory plane, and the induced macroscopic neural oscillations around the memory plane. Such plane produces a limit cycle in reaction to a similar memory cue, which can be used for retrieval of the original input.
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Affiliation(s)
- Hong-Gyu Yoon
- Department of Mathematical Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan Metropolitan City, 44919, Republic of Korea
| | - Pilwon Kim
- Department of Mathematical Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan Metropolitan City, 44919, Republic of Korea.
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48
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Global inhibition in head-direction neural circuits: a systematic comparison between connectome-based spiking neural circuit models. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023:10.1007/s00359-023-01615-z. [PMID: 36781446 DOI: 10.1007/s00359-023-01615-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 01/16/2023] [Accepted: 01/27/2023] [Indexed: 02/15/2023]
Abstract
The recent discovery of the head-direction (HD) system in fruit flies has provided unprecedented insights into the neural mechanisms of spatial orientation. Despite the progress, the neural substance of global inhibition, an essential component of the HD circuits, remains controversial. Some studies suggested that the ring neurons provide global inhibition, while others suggested the Δ7 neurons. In the present study, we provide evaluations from the theoretical perspective by performing systematic analyses on the computational models based on the ring-neuron (R models) and Δ7-neurons (Delta models) hypotheses with modifications according to the latest connectomic data. We conducted four tests: robustness, persistency, speed, and dynamical characteristics. We discovered that the two models led to a comparable performance in general, but each excelled in different tests. The R Models were more robust, while the Delta models were better in the persistency test. We also tested a hybrid model that combines both inhibitory mechanisms. While the performances of the R and Delta models in each test are highly parameter-dependent, the Hybrid model performed well in all tests with the same set of parameters. Our results suggest the possibility of combined inhibitory mechanisms in the HD circuits of fruit flies.
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49
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Pfeiffer K. The neuronal building blocks of the navigational toolkit in the central complex of insects. CURRENT OPINION IN INSECT SCIENCE 2023; 55:100972. [PMID: 36126877 DOI: 10.1016/j.cois.2022.100972] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 09/03/2022] [Accepted: 09/12/2022] [Indexed: 06/15/2023]
Abstract
The central complex in the brain of insects is a group of midline-spanning neuropils at the interface between sensory and premotor tasks of the brain. It is involved in sleep control, decision-making and most prominently in goal-directed locomotion behaviors. The recently published connectome of the central complex of Drosophila melanogaster is a milestone in understanding the intricacies of the central-complex circuits and will provide inspiration for testable hypotheses for the coming years. Here, I provide a basic neuroanatomical description of the central complex of Drosophila and other species and discuss some recent advancements, some of which, such as the discovery of coordinate transformation through vector math, have been predicted from connectomics data.
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Affiliation(s)
- Keram Pfeiffer
- Behavioural Physiology and Sociobiology (Zoology II), Biocenter, University of Würzburg, 97074 Würzburg, Germany.
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50
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The sky compass network in the brain of the desert locust. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2022:10.1007/s00359-022-01601-x. [PMID: 36550368 DOI: 10.1007/s00359-022-01601-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 11/24/2022] [Accepted: 12/06/2022] [Indexed: 12/24/2022]
Abstract
Many arthropods and vertebrates use celestial signals such as the position of the sun during the day or stars at night as compass cues for spatial orientation. The neural network underlying sky compass coding in the brain has been studied in great detail in the desert locust Schistocerca gregaria. These insects perform long-range migrations in Northern Africa and the Middle East following seasonal changes in rainfall. Highly specialized photoreceptors in a dorsal rim area of their compound eyes are sensitive to the polarization of the sky, generated by scattered sunlight. These signals are combined with direct information on the sun position in the optic lobe and anterior optic tubercle and converge from both eyes in a midline crossing brain structure, the central complex. Here, head direction coding is achieved by a compass-like arrangement of columns signaling solar azimuth through a 360° range of space by combining direct brightness cues from the sun with polarization cues matching the polarization pattern of the sky. Other directional cues derived from wind direction and internal self-rotation input are likely integrated. Signals are transmitted as coherent steering commands to descending neurons for directional control of locomotion and flight.
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