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Bodden C, von Kortzfleisch VT, Karwinkel F, Kaiser S, Sachser N, Richter SH. Heterogenising study samples across testing time improves reproducibility of behavioural data. Sci Rep 2019; 9:8247. [PMID: 31160667 PMCID: PMC6547843 DOI: 10.1038/s41598-019-44705-2] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 05/20/2019] [Indexed: 02/06/2023] Open
Abstract
The ongoing debate on the reproducibility crisis in the life sciences highlights the need for a rethinking of current methodologies. Since the trend towards ever more standardised experiments is at risk of causing highly idiosyncratic results, an alternative approach has been suggested to improve the robustness of findings, particularly from animal experiments. This concept, referred to as "systematic heterogenisation", postulates increased external validity and hence, improved reproducibility by introducing variation systematically into a single experiment. However, the implementation of this concept in practice requires the identification of suitable heterogenisation factors. Here we show that the time of day at which experiments are conducted has a significant impact on the reproducibility of behavioural differences between two mouse strains, C57BL/6J and DBA/2N. Specifically, we found remarkably varying strain effects on anxiety, exploration, and learning, depending on the testing time, i.e. morning, noon or afternoon. In a follow-up simulation approach, we demonstrate that the systematic inclusion of two different testing times significantly improved reproducibility between replicate experiments. Our results emphasise the potential of time as an effective and easy-to-handle heterogenisation factor for single-laboratory studies. Its systematic variation likely improves reproducibility of research findings and hence contributes to a fundamental issue of experimental design and conduct in laboratory animal science.
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Affiliation(s)
- Carina Bodden
- Department of Behavioural Biology, University of Münster, Münster, Germany.,Florey Institute of Neuroscience and Mental Health, Melbourne Brain Centre, University of Melbourne, Parkville, VIC, Australia
| | - Vanessa Tabea von Kortzfleisch
- Department of Behavioural Biology, University of Münster, Münster, Germany.,Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - Fabian Karwinkel
- Department of Behavioural Biology, University of Münster, Münster, Germany
| | - Sylvia Kaiser
- Department of Behavioural Biology, University of Münster, Münster, Germany.,Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - Norbert Sachser
- Department of Behavioural Biology, University of Münster, Münster, Germany.,Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - S Helene Richter
- Department of Behavioural Biology, University of Münster, Münster, Germany. .,Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany.
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Abstract
Advances within four persistent, interrelated issues in psychology over the past quarter-century are discussed. Issue 1, ‘The ideas of person, individual and self’, primarily considers the consequences of ‘depersonalization’, or the various attempts to reduce human functioning to biological and/or computational processes. Issue 2, ‘The attribution of purpose, goal direction or intention’, deals with the impact of Wiener’s cybernetics upon the Jamesian concept of mentation. This issue is also concerned with the consequences of hermeneutics’ reaction to ‘scientism’. Issue 3, ‘The tendency to reify, to reduce or to render holistic psychological phenomena’, is discussed. Robinson’s designation of four different types of reductionism is described. The overarching point is made that ‘mentation possesses its own reality’. Issue 4, ‘The concept of causality’, is examined. In dealing with causal relations, psychologists must avoid the tendency to confuse the necessary with the sufficient.
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Abstract
In this paper, two recent interpretations of current work in behavioral genetics are rejected. Genetic reductionism, the view according to which genetic properties are causally sufficient for phenotypic traits, is dismissed because it ignores the fact that there are not only causal pathways from DNA to phenotype but also pathways that feed back from, for instance, the cytoplasm or the outside world to the genetic material. The complexity of development is acknowledged in the view known as developmentalism, which claims that a complex causal network of genetic and non-genetic factors is responsible for phenotypic outcomes. However, genetic explanations, at least in some contexts, do seem to have a privileged status. Heuristic identity theory appears to offer a more adequate interpretation for behavioral genetics. It is in many cases very illuminating to hypothetically identify phenotypic traits with genetic properties. We claim that McCauley and Bechtel's proposal calls for at least two constraints to avoid a wild proliferation of implausible identities. First, more emphasis should be placed on explanatory failures. Second, the most interesting identifications are those that make `qualitative leaps', that is, they must apply across distinct levels of analysis.
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4
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Siska C, Bowler R, Kechris K. The discordant method: a novel approach for differential correlation. ACTA ACUST UNITED AC 2015; 32:690-6. [PMID: 26520855 DOI: 10.1093/bioinformatics/btv633] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 10/24/2015] [Indexed: 11/12/2022]
Abstract
MOTIVATION Current differential correlation methods are designed to determine molecular feature pairs that have the largest magnitude of difference between correlation coefficients. These methods do not easily capture molecular feature pairs that experience no correlation in one group but correlation in another, which may reflect certain types of biological interactions. We have developed a tool, the Discordant method, which categorizes the correlation types for each group to make this possible. RESULTS We compare the Discordant method to existing approaches using simulations and two biological datasets with different types of -omics data. In contrast to other methods, Discordant identifies phenotype-related features at a similar or higher rate while maintaining reasonable computational tractability and usability. AVAILABILITY AND IMPLEMENTATION R code and sample data are available at https://github.com/siskac/discordant CONTACT katerina.kechris@ucdenver.edu SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Affiliation(s)
- Charlotte Siska
- Computational Bioscience Program, Department of Pharmacology, University of Colorado Denver
| | | | - Katerina Kechris
- Department of Biostatistics and Informatics, University of Colorado Denver, Denver, CO, USA
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5
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Sosis C. Hedonic possibilities and heritability statistics. PHILOSOPHICAL PSYCHOLOGY 2014. [DOI: 10.1080/09515089.2013.764563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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6
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A contemporary view of genes and behavior: complex systems and interactions. ADVANCES IN CHILD DEVELOPMENT AND BEHAVIOR 2013; 44:285-306. [PMID: 23834009 DOI: 10.1016/b978-0-12-397947-6.00010-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Several large-scale searches for genes that influence complex human traits, such as intelligence and personality, in the normal range of variation have failed to identify even one gene that makes a significant difference. All previously published claims for genetic influences of this kind now appear to have been false positives. For more serious psychiatric and medical disorders such as schizophrenia and autism, several genes have been found where a rare mutation contributes to abnormal behavior, but in many instances they are de novo mutations not obtained from a parent. Despite the many disappointments in the search for genes influencing human behavior, the field of molecular genetics has made remarkable progress to the extent that several broadly applicable principles can now be affirmed. These principles show how development is regulated by networks of interacting genes that function in an environmental context. They invalidate several key assumptions of statistical genetic analysis that are made when estimating heritability. There is now a need to reform the teaching of genetics to our students and to restrict the funding of further searches for elusive genes that account for so little variance in normal behaviors.
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Tan U. A special case of anencephaly in an early-born baby with an exagerated prognastic face: further example for human devolution. Int J Neurosci 2008; 118:751-60. [PMID: 18465422 DOI: 10.1080/00207450701668004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
A 7-month-old baby was born in a village near Iskenderun (Turkey) where "Unertan Syndrome" with quadrupedality and primitive cognitive abilities was discovered. The clinical diagnosis was anencephaly. However, his head did not show the classical symptoms of anencephaly because it was covered with bony structures. The baby has an ape-like, prognasthic head with low-set ears and flapped ear flaps. The other parts of the body were similar to humans with broad shoulders and a short neck. This may be a further example of human devolution, which was first reported by Tan (2005, 2006a,b,c). A genetic defect affecting the head development including brain may be responsible for the reappearance of the ape-like head in a human being. This human devolution, or evolution in reverse, suggests that the same gene or gene-pool as well as the interactions between genes may be responsible for the transition from our ancestors into human beings with regard to an orthognasthic head, and brain development.
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Affiliation(s)
- Uner Tan
- Department of Physics, Faculty of Sciences, Cukurova University, Adana, Turkey.
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8
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Abstract
"Uner Tan Syndrome" was further studied in a second family. There was no cerebellar atrophy, except a mild vermial atrophy in MRI scans of the affected individuals. This is not, however, the pathogenesis of the "Uner Tan Syndrome", since in the first and second families there were bipedal men exhibiting very similar MRI scans. The second family may also be considered a live model for reverse evolution in human beings. The present work provided evidence for a reverse evolution: (i) quadrupedality; (ii) primitive mental abilities including language; (iii) curved fingers during wrist-walking of the quadrupedal woman; (iv) arm to leg ratios being close to those of the human-like apes. The quadrupedal individuals were raised in separate places, so that they could not imitate each other, excluding the socio-cultural factors contributing to the habitual quadrupedal gait. The results are consistent with the single gene theory, suggesting a single gene controlling multiple behavioral traits, and the psychomotor theory, and a co-evolution of the human mind, an emergent property of the motor system expressed by human language.
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Affiliation(s)
- Uner Tan
- Cukurova University, Medical School, Department of Physiology, Adana, Turkey.
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Abstract
Neurobiological research on aggressive behaviour comes up against particular difficulties that stem from the multifactorial origin of any social behaviour and from the fact that it evolves over time under the shaping influence of experience. From a historical point of view, the conceptual framework progressively switched from a deterministic causality based on the spatial distribution of a specifically-related 'neural substrate' to a probabilistic causality taking into account all the multiple contextual and developmental determinants with their underlying brain processes and mechanisms. With regard to ethical issues, the role and the weight ascribed to biological determinants in the generation of aggressive behaviour greatly influence the way in which one plans to fight against such behaviour.
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Affiliation(s)
- Pierre Karli
- Faculty of Medicine of Strasbourg, French Academy of Sciences, 67000 Strasbourg, France
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10
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Abstract
The study of the genetics of complex behaviors has evolved dramatically from the days of the nature versus nurture debates that dominated much of the past century. Here we discuss advances in our understanding of the genetics of affective and anxiety disorders. In particular, we highlight our growing understanding of specific gene-environment interactions that occur during critical periods in development, setting the stage for later behavioral phenotypes. We review the recent literature in the field, focusing on recent advances in our understanding of the role of the serotonin system in establishing normal anxiety levels during development. We emphasize the importance of understanding the effect of genetic variation at the level of functional circuits and provide examples from the literature of how such an approach has been exploited to study novel genetic endpoints, including genetically based variation in response to medication, a potentially valuable phenotype that has not received much attention to date.
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Affiliation(s)
- E D Leonardo
- Center for Neurobiology and Behavior, Columbia University, New York, New York 10032, USA.
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11
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Dixon JA, Kelley E. The probabilistic epigenesis of knowledge. ADVANCES IN CHILD DEVELOPMENT AND BEHAVIOR 2006; 34:323-63. [PMID: 17120809 DOI: 10.1016/s0065-2407(06)80011-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- James A Dixon
- Department of Psychology, University of Connecticut, Storrs, CT 06269 -1020, USA
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12
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Shanahan MJ, Hofer SM. Social context in gene-environment interactions: retrospect and prospect. J Gerontol B Psychol Sci Soc Sci 2005; 60 Spec No 1:65-76. [PMID: 15863711 DOI: 10.1093/geronb/60.special_issue_1.65] [Citation(s) in RCA: 240] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
While many behavioral scientists believe that gene-environment (GE) interactions play an important and perhaps pervasive role in human development and aging, little attention has been devoted to a fundamental conceptual issue: What is it about social context that could alter gene expression? We draw on existing examples of GE interactions to formulate a typology that identifies a set of generic mechanisms by which E moderates G. Empirical studies suggest four ideal types: Social context can trigger a genetic diathesis, compensate for a genetic diathesis, act as a control to prevent behaviors for which there is a genetic predisposition, and enhance adaptation through proximal processes. This typology highlights several problems, however, with prior empirical research, which may explain, in part, why so few GE interactions have actually been observed. These problems include inattention to the dynamic nature of social experience, the manifold, often-intercorrelated dimensions of social context ("EE interactions"), mediators that link social context and the genotype, and analytic models that examine GE interactions as processes that characterize individual development. In turn, these insights call for the integration of life course sociology and behavioral genetics to foster ways of studying genes, context, and aging.
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Affiliation(s)
- Michael J Shanahan
- Department of Sociology, University of North Carolina, Chapel Hill, NC 27599-3210, USA.
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13
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Abstract
More is known about the genetics of intelligence than about any other trait, behavioral or biological, which is selectively reviewed in this article. Two of the most interesting genetic findings are that heritability of intelligence increases throughout the life span and that the same genes affect diverse cognitive abilities. The most exciting direction for genetic research on intelligence is to harness the power of the Human Genome Project to identify some of the specific genes responsible for the heritability of intelligence. The next research direction will be functional genomics--for example, understanding the brain pathways between genes and intelligence. Deoxyribonucleic acid (DNA) will integrate life sciences research on intelligence; bottom-up molecular biological research will meet top-down psychological research in the brain.
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Affiliation(s)
- Robert Plomin
- Social, Genetic and Developmental Psychiatry Research Centre, Institute of Psychiatry, King's College London, London, England.
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14
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Dal-Farra RA, Prates EJ. A psicologia face aos novos progressos da genética humana. PSICOLOGIA: CIÊNCIA E PROFISSÃO 2004. [DOI: 10.1590/s1414-98932004000100011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Os avanços da Genética contemporânea têm suscitado uma grande polêmica a respeito da gênese do homem e das possibilidades de agir sobre a biologia humana, repercutindo intensamente sobre os mais diversos ramos do conhecimento. Considerando a importância do tema, este texto pretende apresentar de forma sucinta os principais resultados de pesquisas sobre as bases genéticas do comportamento humano, com o foco voltado para a importância do profissional de Psicologia em questões relativas ao assunto.
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Abstract
We are rapidly approaching the postgenomic era in which we will know all of the 3 billion DNA bases in the human genome sequence and all of the variations in the genome sequence that are ultimately responsible for genetic influence on behavior. These ongoing advances and new techniques will make it easier to identify genes associated with psychopathology. Progress in identifying such genes has been slower than some experts expected, probably because many genes are involved for each phenotype, which means the effect of any one gene is small. Nonetheless, replicated linkages and associations are being found, for example, for dementia, reading disability, and hyperactivity. The future of genetic research lies in finding out how genes work (functional genomics). It is important for the future of psychology that pathways between genes and behavior be examined at the top-down psychological level of analysis (behavioral genomics), as well as at the bottom-up molecular biological level of cells or the neuroscience level of the brain. DNA will revolutionize psychological research and treatment during the coming decades.
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Affiliation(s)
- Robert Plomin
- Social, Genetic and Developmental Psychiatry Research Centre, Institute of Psychiatry, King's College London, DeCrespigny Park, London SE5 8AF, UK.
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16
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Affiliation(s)
- D Wahlsten
- Department of Psychology, University of Alberta, Edmonton, Alberta, Canada T6G 2E9.
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17
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Bouchard TJ, McGue M. Genetic and environmental influences on human psychological differences. JOURNAL OF NEUROBIOLOGY 2003; 54:4-45. [PMID: 12486697 DOI: 10.1002/neu.10160] [Citation(s) in RCA: 345] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Psychological researchers typically distinguish five major domains of individual differences in human behavior: cognitive abilities, personality, social attitudes, psychological interests, and psychopathology (Lubinski, 2000). In this article we: discuss a number of methodological errors commonly found in research on human individual differences; introduce a broad framework for interpreting findings from contemporary behavioral genetic studies; briefly outline the basic quantitative methods used in human behavioral genetic research; review the major criticisms of behavior genetic designs, with particular emphasis on the twin and adoption methods; describe the major or dominant theoretical scheme in each domain; and review behavioral genetic findings in all five domains. We conclude that there is now strong evidence that virtually all individual psychological differences, when reliably measured, are moderately to substantially heritable.
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Affiliation(s)
- Thomas J Bouchard
- Department of Psychology, University of Minnesota, Minneapolis, Minnesota 55455, USA.
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18
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Wahlsten D, Metten P, Phillips TJ, Boehm SL, Burkhart-Kasch S, Dorow J, Doerksen S, Downing C, Fogarty J, Rodd-Henricks K, Hen R, McKinnon CS, Merrill CM, Nolte C, Schalomon M, Schlumbohm JP, Sibert JR, Wenger CD, Dudek BC, Crabbe JC. Different data from different labs: lessons from studies of gene-environment interaction. JOURNAL OF NEUROBIOLOGY 2003; 54:283-311. [PMID: 12486710 DOI: 10.1002/neu.10173] [Citation(s) in RCA: 350] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
It is sometimes supposed that standardizing tests of mouse behavior will ensure similar results in different laboratories. We evaluated this supposition by conducting behavioral tests with identical apparatus and test protocols in independent laboratories. Eight genetic groups of mice, including equal numbers of males and females, were either bred locally or shipped from the supplier and then tested on six behaviors simultaneously in three laboratories (Albany, NY; Edmonton, AB; Portland, OR). The behaviors included locomotor activity in a small box, the elevated plus maze, accelerating rotarod, visible platform water escape, cocaine activation of locomotor activity, and ethanol preference in a two-bottle test. A preliminary report of this study presented a conventional analysis of conventional measures that revealed strong effects of both genotype and laboratory as well as noteworthy interactions between genotype and laboratory. We now report a more detailed analysis of additional measures and view the data for each test in different ways. Whether mice were shipped from a supplier or bred locally had negligible effects for almost every measure in the six tests, and sex differences were also absent or very small for most behaviors, whereas genetic effects were almost always large. For locomotor activity, cocaine activation, and elevated plus maze, the analysis demonstrated the strong dependence of genetic differences in behavior on the laboratory giving the tests. For ethanol preference and water escape learning, on the other hand, the three labs obtained essentially the same results for key indicators of behavior. Thus, it is clear that the strong dependence of results on the specific laboratory is itself dependent on the task in question. Our results suggest that there may be advantages of test standardization, but laboratory environments probably can never be made sufficiently similar to guarantee identical results on a wide range of tests in a wide range of labs. Interpretations of our results by colleagues in neuroscience as well as the mass media are reviewed. Pessimistic views, prevalent in the media but relatively uncommon among neuroscientists, of mouse behavioral tests as being highly unreliable are contradicted by our data. Despite the presence of noteworthy interactions between genotype and lab environment, most of the larger differences between inbred strains were replicated across the three labs. Strain differences of moderate effects size, on the other hand, often differed markedly among labs, especially those involving three 129-derived strains. Implications for behavioral screening of targeted and induced mutations in mice are discussed.
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Affiliation(s)
- Douglas Wahlsten
- Centre for Neuroscience and Department of Psychology, University of Alberta, Edmonton, AB T6G 2E9, Canada.
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Chesler EJ, Wilson SG, Lariviere WR, Rodriguez-Zas SL, Mogil JS. Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive. Neurosci Biobehav Rev 2002; 26:907-23. [PMID: 12667496 DOI: 10.1016/s0149-7634(02)00103-3] [Citation(s) in RCA: 247] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Laboratory conditions in biobehavioral experiments are commonly assumed to be 'controlled', having little impact on the outcome. However, recent studies have illustrated that the laboratory environment has a robust effect on behavioral traits. Given that environmental factors can interact with trait-relevant genes, some have questioned the reliability and generalizability of behavior genetic research designed to identify those genes. This problem might be alleviated by the identification of the most relevant environmental factors, but the task is hindered by the large number of factors that typically vary between and within laboratories. We used a computational approach to retrospectively identify and rank sources of variability in nociceptive responses as they occurred in a typical research laboratory over several years. A machine-learning algorithm was applied to an archival data set of 8034 independent observations of baseline thermal nociceptive sensitivity. This analysis revealed that a factor even more important than mouse genotype was the experimenter performing the test, and that nociception can be affected by many additional laboratory factors including season/humidity, cage density, time of day, sex and within-cage order of testing. The results were confirmed by linear modeling in a subset of the data, and in confirmatory experiments, in which we were able to partition the variance of this complex trait among genetic (27%), environmental (42%) and genetic x environmental (18%) sources.
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Affiliation(s)
- Elissa J Chesler
- Department of Psychology, University of Illinois at Urbana-Champaign, 61820, USA
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21
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Abstract
Emx1 is a mammalian homolog of the Drosophila gap gene empty spiracles (ems). Although it has been implicated in the formation of the mouse forebrain, the neuronal functions of this homeobox gene remain unknown. The restricted expression of Emx1 to the cerebral cortex and hippocampus suggests that it might play a role in emotional and other behavioral processes. The present study examined the phenotypes of Emx1-deficient mice generated by gene targeting technology in a battery of behavioral tests with a fixed inter-trial interval of 7 days. Compared with their wild-type littermates, the Emx1 homozygous mutant mice displayed markedly lowered anxiety-like behaviors in the elevated plus maze and dark/light exploration tests. Moreover, they exhibited less depressive-like response as indicated by the reduced duration of immobility in the forced swimming paradigm. There was a trend toward reduction in prepulse inhibition of acoustic startle in the homozygotes. No significant alterations in locomotor activity and susceptibility to pentylenetetrazol-induced seizure were found. This behavioral profile indicates an involvement of Emx1 in the emotional responses of mice.
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Affiliation(s)
- Bo-Jin Cao
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N. Mathews Avenue, Urbana, IL 61801, USA
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22
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Abstract
Even the most extreme environmentalists along the nature-nurture continuum in psychology now acknowledge that genes often contribute to individual differences in behavior. Behavioral traits are complex, reflecting the aggregate effects of many genes. These genetic effects are interactive, inter se and with the environments in which they are expressed. Human studies of addictive behaviors have clearly implicated both environmental and genetic influences. This review selects drug dependence as a paradigmatic addiction, and further, concentrates on the extensive literature with genetic animal models. Both traditional studies with inbred strains and selected lines and studies exploiting the new molecularly based technologies of the genomics era are discussed. Future directions for further contribution of animal models studies to our understanding of the brain dysregulations characteristic of addictions are identified.
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Affiliation(s)
- John C Crabbe
- Portland Alcohol Research Center, Department of Behavioral Neuroscience, Oregon Health & Science University, and VA Medical Center, Portland, Oregon, USA.
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23
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Abstract
Explaining how genes influence behavior is important to many branches of psychology, including development, behavior genetics, and evolutionary psychology. Presented here is a developmental model linking the immediate consequence of gene activity (transcription of messenger RNA molecules from DNA sequences) to behavior through multiple molecular, cellular, and physiological levels. The model provides a level of detail appropriate to theories of behavioral development that recognizes the molecular level of gene action, dispensing with the metaphorical use of such terms as blueprints, plans, or constraints that has obscured much previous discussion. Special attention is paid to the possible role of immediate-early genes in initiating developmental responses to experience, adding specificity to the claim that neither genes nor experience act alone to shape development.
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Affiliation(s)
- Timothy D Johnston
- Department of Psychology, University of North Carolina at Greensboro, 27402-6164, USA.
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24
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Abstract
The way genetic and/or environmental factors influence psychiatric disorders is an enduring question in the field of human psychiatric diseases. Anxiety-related disorders provide a relevant example of how such an interaction is involved in the aetiology of a psychiatric disease. In this paper we review the literature on that subject, reporting data derived from human and rodent studies. We present in a critical way the animal models used in the studies aimed at investigating the genetic basis of anxiety, including inbred mice, selected lines, multiple marker strains, or knockout mice and review data reporting environmental components influencing anxiety-related behaviours. We conclude that anxiety is a complex behaviour, underlined not only by genetic or environmental factors but also by multiple interactions between these two factors.
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Affiliation(s)
- Yan Clément
- Université Reims Champagne-Ardenne, Taittinger, Reims Cedex, France
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25
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Abstract
Behavioural phenotyping of mouse mutants is not a goal in itself but serves to characterise the behavioural effects of naturally occurring or experimentally induced mutations. Genetically engineered mouse mutants are valuable tools to elucidate the genetic control of behaviour and the interaction between genetic and environmental factors. However, a prerequisite for their use is the ability to assess different elements of behaviour. To this end, a battery of tests, which should be flexible enough to meet the needs of a particular study, should be used to characterise the behavioural phenotype. Detailed and extensive information about the effects of gene mutations is crucial for model building and model evaluation. Model building is an iterative process, switching between experimental data and theory formation. In order to facilitate this process and to allow comparison of results within and between laboratories, the standardisation of breeding, housing, and testing conditions is essential. The development and standardisation of sensitive, valid behavioural tests which are suited to phenotype mouse mutants is both a responsibility and a challenge to investigators of mouse behaviour.
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Affiliation(s)
- F J van der Staay
- Cognitive Neurobiology, Institute for Anatomy II, University of Köln, Joseph Stelzmann Str. 9, 50931 Cologne, Germany
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26
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Wahlsten D, Crabbe JC, Dudek BC. Behavioural testing of standard inbred and 5HT(1B) knockout mice: implications of absent corpus callosum. Behav Brain Res 2001; 125:23-32. [PMID: 11682089 DOI: 10.1016/s0166-4328(01)00283-2] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Rapid advances in biotechnology have created new demands for tests of mouse behaviour having both high reliability and high throughput for mass screening. This paper discusses several statistical and psychological factors pertinent to replication of results in different laboratories, and it considers the question of which inbred strains are best for test standardization. In this context, the problem of absent corpus callosum in the 129 strains is addressed with data from a recent study of six diverse tests of behaviour, and it is shown that effects of absent corpus callosum are usually nonsignificant and/or very small. Whether any 129 substrain is to be included in the list of standard strains depends on the goal of the standardization--collecting diverse phenotypic data on most available strains by a few expert investigators (the gold standard) or refining behavioural tests in order to establish a normal range of behaviour that can be used to judge a wider range of strains or even an individual mouse.
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Affiliation(s)
- D Wahlsten
- Department of Psychology and Centre for Neuroscience, University of Alberta, Edmonton, AB, Canada T6G 2E9.
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Geary N, Asarian L, Korach KS, Pfaff DW, Ogawa S. Deficits in E2-dependent control of feeding, weight gain, and cholecystokinin satiation in ER-alpha null mice. Endocrinology 2001; 142:4751-7. [PMID: 11606440 DOI: 10.1210/endo.142.11.8504] [Citation(s) in RCA: 199] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
To test the role of gene expression of the classical ER (ER alpha) in the inhibitory effects of E on food intake and body weight, we ovariectomized and administered E2 benzoate (75 pg/d) or vehicle to wild-type (WT) mice and mice with a null mutation of ER alpha (alpha ERKO). Mice were ovariectomized at age 9 wk, at which time there was no significant effect of genotype on food intake or body weight. During an 18-d test after recovery from ovariectomy, vehicle-treated WT mice increased daily food intake and gained more body weight than E2-treated WT mice, whereas food intake and body weight gain were not different in E2- and vehicle-treated alpha ERKO mice. Carcass analysis revealed parallel changes in body lipid content, but not water or protein content. Because an increase in the potency of the peripheral cholecystokinin (CCK) satiation-signaling system mediates part of E2's influence on feeding in rats, the influence of ip injections of 250 microg of the selective CCK(A) receptor antagonist devazepide was then tested. Devazepide increased 3-h food intake in E2-treated WT mice, but was ineffective in both groups of alpha ERKO mice. Furthermore, ip injections of 4 microg/kg CCK-8 increased the number of cells expressing c-Fos immunoreactivity in the nuclei of the solitary tract of E2-treated WT mice more than it did in vehicle-treated WT mice, whereas E2 had no such effect in alpha ERKO mice. Thus, ER alpha is necessary for normal responsivity of food intake, body weight, adiposity, and the peripheral CCK satiation-signaling system to E2 in mice, and ER beta is not sufficient for any of these effects. This is the first demonstration that ER alpha gene expression is involved in the estrogenic control of feeding behavior and weight regulation of female mice.
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Affiliation(s)
- N Geary
- Bourne Behavioral Research Laboratory, Department of Psychiatry, New York-Presbyterian Hospital-Weill Medical College of Cornell University, White Plains, New York 10605, USA.
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Anagnostopoulos AV, Sharp JJ, Mobraaten LE, Eppig JT, Davisson MT. Availability and characterization of transgenic and knockout mice with behavioral manifestations: where to look and what to search for. Behav Brain Res 2001; 125:33-7. [PMID: 11682090 DOI: 10.1016/s0166-4328(01)00284-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Mice altered by transgenesis or gene targeting ("knockouts") have increasingly been employed as alternative effective tools in elucidating the genetic basis of neurophysiology and behavior. Standardization of specific behavioral paradigms and phenotyping strategies will ensure that these behavioral mouse mutants offer robust models for evaluating the efficacy of novel therapeutics in the treatment of hereditary neurological disorders. The Induced Mutant Resource (IMR) at The Jackson Laboratory (Bar Harbor, Maine, USA) imports, cryopreserves, develops, maintains, and distributes to the research community biomedically valuable stocks of transgenic and targeted mutant mice. Information on behavioral and neurological strains-including a phenotypic synopsis, husbandry requirements, strain availability, and genetic typing protocols-is available through the IMR database (http://www.jax.org/resources/documents/imr/). A current catalog of available strains is readily accessible via the JAX Mice Web site at http://jaxmice.jax.org/index.shtml. In addition, The Jackson Laboratory is now home to TBASE (http://tbase.jax.org/), a comprehensive, community database whose primary focus is on mouse knockouts. TBASE accommodates an exhaustive bibliographical resource for transgenic and knockout mice and provides a detailed phenotypic characterization of numerous behavioral knockouts that is primarily extracted from the literature. Concerted efforts to merge the two resources into a new, schematically reformed database are underway.
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Abstract
As more investigators with widely varying backgrounds enter the field of mouse behavioral genetics, there is a growing need to standardize some of the more popular tests because differences between laboratories in the details of behavioral testing and the pretesting environment can contribute to failures to replicate results of genetic experiments. It is argued here that we have sufficient knowledge to warrant a wise choice of a short list of standard strains and even details of apparatus and protocols for several kinds of behavioral tests. Equating the laboratory environment does not appear to be feasible. Instead, we need to learn what kinds of behavioral tests yield the most stable results in different labs and what kinds are most sensitive to the ubiquitous variations among test sites. Methods for making an informed choice of sample size for evaluating interactions between the laboratory environment and genotype are available and should be utilized in standardization trials. New resources for convenient sharing of data will greatly aid in collaborative and comparative studies involving several sites. Like the sequencing of an entire genome, test standardization is something that needs to be done only once if it is done properly, and the work will then benefit the field of behavioral and neural genetics for many years.
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Affiliation(s)
- D Wahlsten
- Department of Psychology, University of Alberta, P-220 Biological Sciences Building, Edmonton, Alberta, Canada T6G 2E9.
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Abstract
Although evolutionary psychology is typically associated with "selfish gene theory," numerous other approaches to the study of mind and behavior provide a wealth of concepts for theorizing about psychology, culture, and development. These include general evolutionary approaches and theories focused on sociality, dual inheritance, multilevel selection, and developmental systems. Most evolutionary accounts use the same methods as Darwin-the "fit among facts"-to use natural selection as an explanation for behavior. Scientific standards for constraining and evaluating such accounts, research into the mutual influence of science and society on the understanding of evolution, and computational technologies for modeling species-typical processes are important considerations. Coevolutionary theories and developmental systems theories may eventually give rise to unification in a broad and general sense. Such a unification would be interdisciplinary and problem centered rather than discipline centered.
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Affiliation(s)
- L R Caporael
- Department of Science and Technology Studies, Rensselaer Polytechnic Institute, Troy, New York 12180, USA.
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Borkenau P, Riemann R, Angleitner A, Spinath FM. Genetic and environmental influences on observed personality: evidence from the German Observational Study of Adult Twins. J Pers Soc Psychol 2001; 80:655-68. [PMID: 11316228 DOI: 10.1037/0022-3514.80.4.655] [Citation(s) in RCA: 97] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Previous behavior-genetic research on adult personality relied primarily on self-reports or peer reports that may be subject to contrast effects, resulting in biased estimates of genetic and environmental influences. In the German Observational Study of Adult Twins (GOSAT), personality traits of 168 monozygotic (MZ) and 132 dizygotic (DZ) twin pairs were rated on 35 adjective scales, largely markers of the Big 5. The ratings were provided by 120 judges who never met the twins but observed videotaped behaviors of 1 twin of each pair in 1 of 15 different settings. The aggregated video-based trait ratings were highly reliable, and substantial correlations were obtained between MZ as well as DZ twins. Model-fit analyses suggested about 40% genetic, 25% shared environmental, and 35% nonshared environmental influence. Extraversion was the only trait that seemed not to be influenced by shared environment.
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Affiliation(s)
- P Borkenau
- Department of Psychology, Martin-Luther-Universität, Halle, Germany.
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Abstract
The authors predict that in a few years, many areas of psychology will be awash in specific genes responsible for the widespread influence of genetics on behavior. As the focus shifts from finding genes (genomics) to understanding how genes affect behavior (behavioral genomics), it is important for the future of psychology as a science that pathways between genes and behavior be examined not only at the molecular biological level of cells or the neuroscience level of the brain but also at the psychological level of analysis. After a brief overview of quantitative genetic research, the authors describe how genes that influence complex traits like behavioral dimensions and disorders in human and nonhuman animals are being found. Finally, the authors discuss behavioral genomics and predict that DNA will revolutionize psychological research and treatment early in the 21st century.
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Balogh SA, Kwon YT, Denenberg VH. Varying intertrial interval reveals temporally defined memory deficits and enhancements in NTAN1-deficient mice. Learn Mem 2000; 7:279-86. [PMID: 11040259 PMCID: PMC311346 DOI: 10.1101/lm.33500] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The N-end rule is one ubiquitin-proteolytic pathway that relates the in vivo half-life of a protein to the identity of its N-terminal residue. NTAN1 deamidates N-terminal asparagine to aspartate, which is conjugated to arginine by ATE1. An N-terminal arginine-bearing substrate protein is recognized, ubiquitylated by UBR1/E3alpha, and subsequently degraded by 26S proteasomes. Previous research showed that NTAN1-deficient mice exhibited impaired long-term memory in the Lashley III maze. Therefore, a series of studies, designed to assess the role of NTAN1 in short- and intermediate-term memory processes, was undertaken. Two hundred sixty mice (126 -/-; 134 +/ +) received Lashley III maze training with intertrial intervals ranging from 2-180 min. Results indicated that inactivation of NTAN1 amidase differentially affects short-, intermediate-, and long-term memory.
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Affiliation(s)
- S A Balogh
- Biobehavioral Sciences Graduate Degree Program, University of Connecticut, Storrs, Connecticut 06269, USA
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Abstract
Genes, the basic building blocks of evolution, are highly conserved. For example, the mouse and human have approximately the same number of genes, and around 94% are identical in the two species. Since species differ on multiple dimensions (e.g., anatomy, physiology, and behavior), it follows that identical genes may subserve different functions in different species. Two reasons for this are gene-gene interaction and gene-environment interaction (and it is the presence of these interactions which prevents one from making deterministic statements about genetics, thus rendering obsolete the nature-nurture controversy). Behavioral examples of both types of interactions are presented, including studies showing that (1) the uterine environment enhances later cognitive competence, (2) early postnatal experiences affect learning and emotionality and can extend into future generations, (3) maternal behavior changes the offspring's later behavior and physiology, and (4) knocking out one gene results in an animal less competent in one learning process but more competent in a complementary learning process.
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Affiliation(s)
- V H Denenberg
- Biobehavioral Sciences Graduate Degree Program, University of Connecticut, Storrs 06269-4154, USA.
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Abstract
Reviewers in the 1960s and early 1970s were skeptical about any substantial role for genetic factors in the etiology of autism. A realization that the 2% rate of autism in siblings (as estimated at that time) was far above the general population base rate, and that this suggested a possible high genetic liability, led to the first small-scale twin study of autism. The replicated evidence from both twin and family studies undertaken in the 1970s and 1980s indicated both strong genetic influences and the likelihood that they applied to a phenotype that was much broader than the traditional diagnostic category of autism. Medical and chromosomal findings also indicated genetic heterogeneity. Advances in molecular genetics led to genome-wide scans of affected relative pair samples with a positive log of the odds to base 10 score for a location on chromosome 7. The major remaining research challenges and the likely clinical benefits that should derive from genetic research are considered in relation to both current knowledge and that anticipated to emerge from research over the next decade.
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Affiliation(s)
- M Rutter
- Social, Genetic, and Developmental Psychiatry Research Centre, Institute of Psychiatry, London, UK.
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Erratum: Errata. Nat Biotechnol 1999. [DOI: 10.1038/7831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Affiliation(s)
- R C Strohman
- Department of Molecular and Cell Biology, University of California, Berkeley 94720-3206, USA.
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