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For: Garcia-Reyero N, Adelman IR, Martinović D, Liu L, Denslow ND. Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants. BMC Bioinformatics 2009;10 Suppl 11:S11. [PMID: 19811676 PMCID: PMC2759673 DOI: 10.1186/1471-2105-10-s11-s11] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
Number Cited by Other Article(s)
1
Bertolatus DW, Barber LB, Martyniuk CJ, Zhen H, Collette TW, Ekman DR, Jastrow A, Rapp JL, Vajda AM. Multi-omic responses of fish exposed to complex chemical mixtures in the Shenandoah River watershed. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;902:165975. [PMID: 37536598 PMCID: PMC10592118 DOI: 10.1016/j.scitotenv.2023.165975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 07/24/2023] [Accepted: 07/30/2023] [Indexed: 08/05/2023]
2
Krämer S, Busch W, Schüttler A. A Self-Organizing Map of the Fathead Minnow Liver Transcriptome to Identify Consistent Toxicogenomic Patterns across Chemical Fingerprints. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2020;39:526-537. [PMID: 31820487 DOI: 10.1002/etc.4646] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Revised: 08/20/2019] [Accepted: 12/05/2019] [Indexed: 06/10/2023]
3
Zare A, Henry D, Chua G, Gordon P, Habibi HR. Differential Hepatic Gene Expression Profile of Male Fathead Minnows Exposed to Daily Varying Dose of Environmental Contaminants Individually and in Mixture. Front Endocrinol (Lausanne) 2018;9:749. [PMID: 30619083 PMCID: PMC6295643 DOI: 10.3389/fendo.2018.00749] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Accepted: 11/26/2018] [Indexed: 01/09/2023]  Open
4
Perkins EJ, Habib T, Escalon BL, Cavallin JE, Thomas L, Weberg M, Hughes MN, Jensen KM, Kahl MD, Villeneuve DL, Ankley GT, Garcia-Reyero N. Prioritization of Contaminants of Emerging Concern in Wastewater Treatment Plant Discharges Using Chemical:Gene Interactions in Caged Fish. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017;51. [PMID: 28651047 PMCID: PMC6126926 DOI: 10.1021/acs.est.7b01567] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
5
Marjan P, Martyniuk CJ, Fuzzen MLM, MacLatchy DL, McMaster ME, Servos MR. Returning to normal? Assessing transcriptome recovery over time in male rainbow darter (Etheostoma caeruleum) liver in response to wastewater-treatment plant upgrades. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2017;36:2108-2122. [PMID: 28106290 DOI: 10.1002/etc.3741] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 12/05/2016] [Accepted: 01/17/2017] [Indexed: 06/06/2023]
6
Marjan P, Bragg LM, MacLatchy DL, Servos MR, Martyniuk CJ. How Does Reference Site Selection Influence Interpretation of Omics Data?: Evaluating Liver Transcriptome Responses in Male Rainbow Darter (Etheostoma caeruleum) across an Urban Environment. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017;51:6470-6479. [PMID: 28489360 DOI: 10.1021/acs.est.7b00894] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
7
Schroeder AL, Martinović-Weigelt D, Ankley GT, Lee KE, Garcia-Reyero N, Perkins EJ, Schoenfuss HL, Villeneuve DL. Prior knowledge-based approach for associating contaminants with biological effects: A case study in the St. Croix River basin, MN, WI, USA. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017;221:427-436. [PMID: 27939634 PMCID: PMC6139436 DOI: 10.1016/j.envpol.2016.12.005] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 11/14/2016] [Accepted: 12/03/2016] [Indexed: 05/19/2023]
8
Schulze TT, Ali JM, Bartlett ML, McFarland MM, Clement EJ, Won HI, Sanford AG, Monzingo EB, Martens MC, Hemsley RM, Kumar S, Gouin N, Kolok AS, Davis PH. De novo Assembly and Analysis of the Chilean Pencil Catfish Trichomycterus areolatus Transcriptome. J Genomics 2016;4:29-41. [PMID: 27672404 PMCID: PMC5033730 DOI: 10.7150/jgen.16885] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
9
Martyniuk CJ, Doperalski NJ, Prucha MS, Zhang JL, Kroll KJ, Conrow R, Barber DS, Denslow ND. High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2016;19:140-150. [DOI: 10.1016/j.cbd.2016.06.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Revised: 04/05/2016] [Accepted: 06/09/2016] [Indexed: 12/28/2022]
10
Marlatt VL, Sherrard R, Kennedy CJ, Elphick JR, Martyniuk CJ. Application of molecular endpoints in early life stage salmonid environmental biomonitoring. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2016;173:178-191. [PMID: 26874677 DOI: 10.1016/j.aquatox.2016.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Revised: 01/16/2016] [Accepted: 01/20/2016] [Indexed: 06/05/2023]
11
Bahamonde PA, Feswick A, Isaacs MA, Munkittrick KR, Martyniuk CJ. Defining the role of omics in assessing ecosystem health: Perspectives from the Canadian environmental monitoring program. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2016;35:20-35. [PMID: 26771350 DOI: 10.1002/etc.3218] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2015] [Revised: 05/16/2015] [Accepted: 08/20/2015] [Indexed: 05/22/2023]
12
Baldigo BP, George SD, Phillips PJ, Hemming JDC, Denslow ND, Kroll KJ. Potential estrogenic effects of wastewaters on gene expression in Pimephales promelas and fish assemblages in streams of southeastern New York. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2015;34:2803-2815. [PMID: 26423596 DOI: 10.1002/etc.3120] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2014] [Revised: 02/10/2015] [Accepted: 06/13/2015] [Indexed: 06/05/2023]
13
Jeffrey JD, Hasler CT, Chapman JM, Cooke SJ, Suski CD. Linking Landscape-Scale Disturbances to Stress and Condition of Fish: Implications for Restoration and Conservation. Integr Comp Biol 2015;55:618-30. [PMID: 25931612 DOI: 10.1093/icb/icv022] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
14
Kahl MD, Villeneuve DL, Stevens K, Schroeder A, Makynen EA, LaLone CA, Jensen KM, Hughes M, Holmen BA, Eid E, Durhan EJ, Cavallin JE, Berninger J, Ankley GT. An inexpensive, temporally integrated system for monitoring occurrence and biological effects of aquatic contaminants in the field. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2014;33:1584-95. [PMID: 24668901 DOI: 10.1002/etc.2591] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Revised: 02/26/2014] [Accepted: 03/21/2014] [Indexed: 05/03/2023]
15
Christiansen HE, Mehinto AC, Yu F, Perry RW, Denslow ND, Maule AG, Mesa MG. Correlation of gene expression and contaminant concentrations in wild largescale suckers: a field-based study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014;484:379-389. [PMID: 24050789 DOI: 10.1016/j.scitotenv.2013.08.034] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2013] [Revised: 08/08/2013] [Accepted: 08/12/2013] [Indexed: 06/02/2023]
16
Berninger JP, Martinović-Weigelt D, Garcia-Reyero N, Escalon L, Perkins EJ, Ankley GT, Villeneuve DL. Using transcriptomic tools to evaluate biological effects across effluent gradients at a diverse set of study sites in Minnesota, USA. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014;48:2404-2412. [PMID: 24433150 DOI: 10.1021/es4040254] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
17
Skelton DM, Ekman DR, Martinović-Weigelt D, Ankley GT, Villeneuve DL, Teng Q, Collette TW. Metabolomics for in situ environmental monitoring of surface waters impacted by contaminants from both point and nonpoint sources. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014;48:2395-2403. [PMID: 24328273 DOI: 10.1021/es404021f] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
18
Vidal-Dorsch DE, Colli-Dula RC, Bay SM, Greenstein DJ, Wiborg L, Petschauer D, Denslow ND. Gene expression of fathead minnows (Pimephales promelas) exposed to two types of treated municipal wastewater effluents. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2013;47:11268-11277. [PMID: 23919544 DOI: 10.1021/es401942n] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
19
Grether GF. Redesigning the genetic architecture of phenotypically plastic traits in a changing environment. Biol J Linn Soc Lond 2013. [DOI: 10.1111/bij.12064] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
20
Osachoff H, van Aggelen G, Mommsen T, Kennedy C. Concentration–response relationships and temporal patterns in hepatic gene expression of Chinook salmon (Oncorhynchus tshawytscha) exposed to sewage. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2013;8:32-44. [DOI: 10.1016/j.cbd.2012.10.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2012] [Revised: 10/13/2012] [Accepted: 10/15/2012] [Indexed: 12/22/2022]
21
Simpkins AM, Tatum TE, Cardin DL, Wolf WC. Metallothionein and heat-shock protein 70 induction in caged and wild fathead minnows (Pimephales promelas) exposed to the Ouachita River, Louisiana. JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH. PART A 2013;76:98-106. [PMID: 23294298 DOI: 10.1080/15287394.2013.738174] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
22
Costigan SL, Werner J, Ouellet JD, Hill LG, Law RD. Expression profiling and gene ontology analysis in fathead minnow (Pimephales promelas) liver following exposure to pulp and paper mill effluents. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2012;122-123:44-55. [PMID: 22728206 DOI: 10.1016/j.aquatox.2012.05.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2012] [Revised: 05/14/2012] [Accepted: 05/24/2012] [Indexed: 06/01/2023]
23
Effect-based tools for monitoring and predicting the ecotoxicological effects of chemicals in the aquatic environment. SENSORS 2012;12:12741-71. [PMID: 23112741 PMCID: PMC3478868 DOI: 10.3390/s120912741] [Citation(s) in RCA: 145] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2012] [Revised: 08/28/2012] [Accepted: 08/30/2012] [Indexed: 11/21/2022]
24
Lorenzi V, Mehinto AC, Denslow ND, Schlenk D. Effects of exposure to the β-blocker propranolol on the reproductive behavior and gene expression of the fathead minnow, Pimephales promelas. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2012;116-117:8-15. [PMID: 22465857 DOI: 10.1016/j.aquatox.2012.03.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2011] [Revised: 02/28/2012] [Accepted: 03/01/2012] [Indexed: 05/22/2023]
25
Sellin Jeffries MK, Mehinto AC, Carter BJ, Denslow ND, Kolok AS. Taking microarrays to the field: differential hepatic gene expression of caged fathead minnows from Nebraska watersheds. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012;46:1877-1885. [PMID: 22165990 DOI: 10.1021/es2039097] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
26
Piña B, Barata C. A genomic and ecotoxicological perspective of DNA array studies in aquatic environmental risk assessment. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2011;105:40-49. [PMID: 22099343 DOI: 10.1016/j.aquatox.2011.06.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2011] [Revised: 06/01/2011] [Accepted: 06/04/2011] [Indexed: 05/31/2023]
27
Ings JS, Servos MR, Vijayan MM. Hepatic transcriptomics and protein expression in rainbow trout exposed to municipal wastewater effluent. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2011;45:2368-2376. [PMID: 21322548 DOI: 10.1021/es103122g] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
28
Garcia-Reyero N, Perkins EJ. Systems biology: leading the revolution in ecotoxicology. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2011;30:265-273. [PMID: 21072840 DOI: 10.1002/etc.401] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
29
Garcia-Reyero N, Lavelle CM, Escalon BL, Martinović D, Kroll KJ, Sorensen PW, Denslow ND. Behavioral and genomic impacts of a wastewater effluent on the fathead minnow. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2011;101:38-48. [PMID: 20888052 DOI: 10.1016/j.aquatox.2010.08.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 08/24/2010] [Accepted: 08/26/2010] [Indexed: 05/29/2023]
30
Wren JD, Kupfer DM, Perkins EJ, Bridges S, Berleant D. Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 2010;11 Suppl 6:S1. [PMID: 20946592 PMCID: PMC3026356 DOI: 10.1186/1471-2105-11-s6-s1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
31
Wren JD, Gusev Y, Isokpehi RD, Berleant D, Braga-Neto U, Wilkins D, Bridges S. Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 2009;10 Suppl 11:S1. [PMID: 19811674 PMCID: PMC3313274 DOI: 10.1186/1471-2105-10-s11-s1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
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