1
|
da Silva DO, Ratko J, Côrrea APN, da Silva NG, Pereira DMC, Schleger IC, Neundorf AKA, de Souza MRDP, Herrerias T, Donatti L. Assessing physiological responses and oxidative stress effects in Rhamdia voulezi exposed to high temperatures. FISH PHYSIOLOGY AND BIOCHEMISTRY 2024; 50:617-633. [PMID: 38175338 DOI: 10.1007/s10695-023-01294-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 12/22/2023] [Indexed: 01/05/2024]
Abstract
Exposure to high temperatures induces changes in fish respiration, resulting in an increased production of reactive oxygen species. This, in turn, affects the enzymatic and non-enzymatic components of antioxidant defenses, which are essential for mitigating cellular stress. Rhamdia voulezi, an economically important fish species endemic to Brazil's Iguaçu River, served as the subject of our study. Our goal was to assess enzymatic antioxidant biomarkers (superoxide dismutase, catalase, glutathione peroxidase, glutathione S-transferase, glutathione reductase, glucose-6-phosphate dehydrogenase), non-protein thiol levels (reduced glutathione), and markers of oxidative damage (lipoperoxidation and carbonylation) in the liver, gills, and kidneys of R. voulezi after acute exposure to high temperatures (31°C) for 2, 6, 12, 24, and 96 h. Control groups were maintained at 21°C. Our findings revealed that the liver exhibited increased superoxide dismutase levels up to 12 h and elevated glutathione S-transferase levels at 12 and 96 h at 31°C. In the gills, superoxide dismutase levels increased up to 24 h, along with increased lipoperoxidation at 2, 6, 12, and 96 h of exposure to high temperatures. The kidneys responded to heat stress at 12 h, with an increase in superoxide dismutase and catalase activity, and lipid peroxidation was observed at 2 and 6 h at 31°C. The three tissues evaluated responded differently to heat stress, with the liver demonstrating greater physiological adjustment to high temperatures. The intricate interplay of various antioxidant defense biomarkers and oxidative damage suggests the presence of oxidative stress in R. voulezi when exposed to high temperatures.
Collapse
Affiliation(s)
- Diego Ortiz da Silva
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Jonathan Ratko
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Ana Paula Nascimento Côrrea
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Niumaique Gonçalves da Silva
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Diego Mauro Carneiro Pereira
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Ieda Cristina Schleger
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Ananda Karla Alvez Neundorf
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Maria Rosa Dmengeon Pedreiro de Souza
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil
| | - Tatiana Herrerias
- Department of Clinical Analysis, Federal University of Santa Catarina, Florianópolis, Santa Catarina, Brazil
| | - Lucélia Donatti
- Adaptive Biology Laboratory, Federal University of Paraná, Av. Cel.Francisco H. dos Santos, s/n, Jardim das Américas, 19031, Curitiba, Paraná, CEP: 81531-970, Brazil.
| |
Collapse
|
2
|
De la Llave-Propín Á, Martínez Villalba A, Villarroel M, Pérez C, González de Chávarri E, Díaz MT, Cabezas A, González Garoz R, De la Fuente J, Bermejo-Poza R. Environmental enrichment improves growth and fillet quality in rainbow trout. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:3487-3497. [PMID: 38133882 DOI: 10.1002/jsfa.13234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 11/14/2023] [Accepted: 12/20/2023] [Indexed: 12/23/2023]
Abstract
BACKGROUND Some environmental enrichment methods, such as occupational enrichment (OE), can improve fish growth, but little is known about its effects on fillet quality. In this study, we evaluated the effects of OE using underwater currents on different aspects of fillet quality and muscle metabolism in rainbow trout (Oncorhynchus mykiss), before and after a handling procedure (fasting). The trout were placed in groups of 30 in separate tanks in three treatments for 30 days: no artificial currents (CON), randomly fired underwater currents (RFC), and continuous underwater currents (CUC). Additionally, half of the individuals in each treatment were fasted (5 days, 45.2 °C days). RESULTS Slaughter weight, condition factor, and relative growth were lower in CON fish, indicating a positive effect of OE on growth. Rigor mortis, muscle pH, and muscle glycogen levels were similar among treatments, indicating no effect of OE on classical measures of fillet quality. However, significant differences were found regarding fillet colour and muscle enzymes. The fillets of RFC fish were more salmon-pink in colour, which is favoured by consumers. Also, activity levels of pyruvate kinase and glycogen phosphorylase in muscle were significantly higher in CUC fish, probably due to increased energy demands, as pumps were on continually in that treatment. CONCLUSION Overall, RFC fish seemed to have received enough stimulation to improve growth while not being excessive in terms of exhausting the animals (avoiding negative effects on muscle metabolism), whereas OE may have provided a hormetic effect, allowing fish to better adjust to fasting. © 2023 Society of Chemical Industry.
Collapse
Affiliation(s)
- Álvaro De la Llave-Propín
- CEIGRAM-ETSIAAB, Universidad Politécnica de Madrid, Madrid, Spain
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | - Andrea Martínez Villalba
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Concepción Pérez
- Departamento de Fisiología Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | | | - María Teresa Díaz
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | - Almudena Cabezas
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | - Roberto González Garoz
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | - Jesús De la Fuente
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| | - Rubén Bermejo-Poza
- Departamento de Producción Animal, Facultad de Veterinaria, Universidad Complutense de Madrid, Madrid, Spain
| |
Collapse
|
3
|
Ren X, Zhao J, Hu J. Non-concordant epigenetic and transcriptional responses to acute thermal stress in western mosquitofish (Gambusia affinis). Mol Ecol 2024:e17332. [PMID: 38529738 DOI: 10.1111/mec.17332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 02/28/2024] [Accepted: 03/18/2024] [Indexed: 03/27/2024]
Abstract
Climate change is intensifying the frequency and severity of extreme temperatures. Understanding the molecular mechanisms underlying the ability to cope with acute thermal stress is key for predicting species' responses to extreme temperature events. While many studies have focused on the individual roles of gene expression, post-transcriptional processes and epigenetic modifications in response to acute thermal stress, the relative contribution of these molecular mechanisms remains unclear. The wide range of thermal limits of western mosquitofish (Gambusia affinis) provides an opportunity to explore this interplay. Here, we quantified changes in gene expression, alternative splicing, DNA methylation and microRNA (miRNA) expression in muscle tissue dissected from mosquitofish immediately after reaching high (CTmax) or low thermal limit (CTmin). Although the numbers of genes showing expression and splicing changes in response to acute temperature stress were small, we found a possibly larger and non-redundant role of splicing compared to gene expression, with more genes being differentially spliced (DSGs) than differentially expressed (DEGs), and little overlap between DSGs and DEGs. We also identified a small proportion of CpGs showing significant methylation change (i.e. differentially methylated cytosines, DMCs) in fish at thermal limits; however, there was no overlap between DEGs and genes annotated with DMCs in both CTmax and CTmin experiments. The weak interplay between epigenetic modifications and gene expression was further supported by our discoveries of no differentially expressed miRNAs. These findings provide novel insights into the relative role of different molecular mechanisms underlying immediate responses to extreme temperatures and demonstrate non-concordant responses of epigenetic and transcriptional mechanisms to acute temperature stress.
Collapse
Affiliation(s)
- Xingyue Ren
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, P. R. China
| | - Junjie Zhao
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, P. R. China
| | - Juntao Hu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, P. R. China
| |
Collapse
|
4
|
Mukherjee I, Bhat A. Shoals in troubled waters? The impact of rising temperatures on metabolism, foraging, and shoaling behavior in mixed-species shoals. JOURNAL OF FISH BIOLOGY 2024. [PMID: 38468594 DOI: 10.1111/jfb.15707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 02/07/2024] [Accepted: 02/13/2024] [Indexed: 03/13/2024]
Abstract
Rising water temperatures across aquatic habitats, in the current global climate change scenario, can directly affect metabolism and food intake in fish species. This can potentially alter their physiological, behavioral, and shoaling properties. In the current study, we examined the effects of high temperatures on metabolism, foraging, and shoaling in tropical fish. Mixed-species (comprising flying barbs, zebrafish, and gambusia) and single-species (flying barbs and zebrafish) shoals were conditioned for 45 days to three kinds of temperature regimes: the current temperature regime (CTR), in which shoals were maintained at water temperature of 24°C (i.e., the current mean temperature of their habitat), the predicted temperature regime (PTR) at 31°C (i.e., simulating conditions projected for their habitat in 2100), and the dynamic temperature regime (DTR), which experienced daily temperature fluctuations between 24 and 31°C (i.e., resembling rapid temperature changes expected in their natural environments). We found species-specific responses to these temperature regimes. Flying barbs exhibited significantly lower body weight at PTR but maintained consistent muscle glycogen content across all temperature regimes. In contrast, zebrafish and gambusia displayed significantly elevated muscle glycogen content at PTR, with similar body weights across all three temperature regimes. Cohesion within flying barb shoals and cohesion/polarization in mixed-species shoals decreased significantly at PTR. Shoals exposed to DTR exhibited intermediate characteristics between those conditioned to CTR and PTR, suggesting that shoals may be less impacted by dynamic temperatures compared to prolonged high temperatures. This study highlights species-specific metabolic responses to temperature changes and their potential implications for larger-scale shoal properties.
Collapse
Affiliation(s)
- Ishani Mukherjee
- Department of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, India
| | - Anuradha Bhat
- Department of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, India
| |
Collapse
|
5
|
Fernández I, Larrán AM, de Paz P, Riesco MF. The Direct Effects of Climate Change on Tench ( Tinca tinca) Sperm Quality under a Real Heatwave Event Scenario. Animals (Basel) 2024; 14:778. [PMID: 38473163 DOI: 10.3390/ani14050778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 02/21/2024] [Accepted: 02/26/2024] [Indexed: 03/14/2024] Open
Abstract
Global aquaculture growth will most probably face specific conditions derived from climate change. In fact, the most severe impacts of these changes will be suffered by aquatic populations in restrictive circumstances, such as current aquaculture locations, which represent a perfect model to study global warming effects. Although the impact of temperature on fish reproduction has been characterized in many aspects, this study was focused on recreating more realistic models of global warming, particularly considering heatwave phenomena, in order to decipher its effects on male gametes (spermatozoa). For this purpose, thermal stress via a heatwave simulation (mimicking a natural occurring heatwave, from 24 to 30 °C) was induced in adult tench (Tinca tinca) males and compared with a control group (55.02 ± 16.44 g of average body wet weight). The impact of the thermal stress induced by this climate change event was assessed using cellular and molecular approaches. After the heatwave recreation, a multiparametric analysis of sperm quality, including some traditional parameters (such as sperm motility) and new ones (focus on redox balance and sperm quality biomarkers), was performed. Although sperm concentration and the volume produced were not affected, the results showed a significant deleterious effect on motility parameters (e.g., reduced progressive motility and total motility during the first minute post-activation). Furthermore, the sperm produced under the thermal stress induced by this heatwave simulation exhibited an increased ROS content in spermatic cells, confirming the negative effect that this thermal stress model (heatwave recreation) might have had on sperm quality. More importantly, the expression of some known sperm quality and fertilization markers was decreased in males exposed to thermal stress. This present study not only unveils the potential effects of climate change in contemporary and future fish farming populations (and their underlying mechanisms) but also provides insights on how to mitigate and/or avoid thermal stress due to heatwave events.
Collapse
Affiliation(s)
- Ignacio Fernández
- Spanish Institute of Oceanography (IEO-CSIC), Centro Oceanográfico de Vigo, Subida a Radio Faro nº 52, 36390 Vigo, Spain
| | - Ana M Larrán
- Aquaculture Research Center, Agro-Technological Institute of Castilla y León (ITACyL), Ctra. Arévalo, Zamarramala, 40196 Segovia, Spain
| | - Paulino de Paz
- Cell Biology Area, Department of Molecular Biology, Universidad de León, Campus de Vegazana, sn, 24071 León, Spain
| | - Marta F Riesco
- Cell Biology Area, Department of Molecular Biology, Universidad de León, Campus de Vegazana, sn, 24071 León, Spain
| |
Collapse
|
6
|
Housh MJ, Telish J, Forsgren KL, Lema SC. Fluctuating and Stable High Temperatures Differentially Affect Reproductive Endocrinology of Female Pupfish. Integr Org Biol 2024; 6:obae003. [PMID: 38464886 PMCID: PMC10924253 DOI: 10.1093/iob/obae003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 12/25/2023] [Accepted: 01/30/2024] [Indexed: 03/12/2024] Open
Abstract
For many fishes, reproductive function is thermally constrained such that exposure to temperatures above some upper threshold has detrimental effects on gametic development and maturation, spawning frequency, and mating behavior. Such impairment of reproductive performance at elevated temperatures involves changes to hypothalamic-pituitary-gonadal (HPG) axis signaling and diminished gonadal steroidogenesis. However, how HPG pathways respond to consistently high versus temporally elevated temperatures is not clear. Here, sexually mature Amargosa River Pupfish (Cyprinodon nevadensis amargosae) were maintained under thermal regimes of either stable ∼25°C (low temperature), diurnal cycling temperatures between ∼27 and 35°C (fluctuating temperature), or stable ∼35°C (high temperature) conditions for 50 days to examine effects of these conditions on HPG endocrine signaling components in the pituitary gland and gonad, ovarian and testicular gametogenesis status, and liver gene expression relating to oogenesis. Female pupfish maintained under stable high and fluctuating temperature treatments showed reduced gonadosomatic index values as well as a lower proportion of oocytes in the lipid droplet and vitellogenic stages. Females in both fluctuating and stable 35°C conditions exhibited reduced ovarian mRNAs for steroid acute regulatory protein (star), cholesterol side chain-cleavage enzyme, P450scc (cyp11a1), and 3β-hydroxysteroid dehydrogenase (3bhsd), while ovarian transcripts encoding 11β-hydroxysteroid dehydrogenase (11bhsd) and sex hormone-binding globulin (shbg) were elevated in females at constant 35°C only. Ovarian aromatase (cyp19a1a) mRNA levels were unaffected, but circulating 17β-estradiol (E2) was lower in females at 35°C compared to the fluctuating temperature condition. In the liver, mRNA levels for choriogenins and vitellogenin were downregulated in both the fluctuating and 35°C conditions, while hepatic estrogen receptor 2a (esr2a) and shbg mRNAs were elevated in 35°C females. Taken together, these results demonstrate the potential for elevated temperatures to impair ovarian steroidogenesis and reduce egg envelope and vitellogenin protein production in female C. n. amargosae pupfish, while also shedding light on how thermal regimes that only intermittently reach the upper thermal range for reproduction have differential impacts on reproductive endocrine pathways than constantly warm conditions.
Collapse
Affiliation(s)
- M J Housh
- Biological Sciences Department, Center for Coastal Marine Sciences, California Polytechnic State University, San Luis Obispo, CA 93407, USA
| | - J Telish
- Department of Biological Science, California State University, Fullerton, CA 92834, USA
| | - K L Forsgren
- Department of Biological Science, California State University, Fullerton, CA 92834, USA
| | - S C Lema
- Biological Sciences Department, Center for Coastal Marine Sciences, California Polytechnic State University, San Luis Obispo, CA 93407, USA
| |
Collapse
|
7
|
Moore B, Jolly J, Izumiyama M, Kawai E, Ravasi T, Ryu T. Tissue-specific transcriptional response of post-larval clownfish to ocean warming. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168221. [PMID: 37923256 DOI: 10.1016/j.scitotenv.2023.168221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 10/24/2023] [Accepted: 10/28/2023] [Indexed: 11/07/2023]
Abstract
Anthropogenically driven climate change is predicted to increase average sea surface temperatures, as well as the frequency and intensity of marine heatwaves in the future. This increasing temperature is predicted to have a range of negative physiological impacts on multiple life-stages of coral reef fish. Nevertheless, studies of early-life stages remain limited, and tissue-specific transcriptomic studies of post-larval coral reef fish are yet to be conducted. Here, in an aquaria-based study we investigate the tissue-specific (brain, liver, muscle, and digestive tract) transcriptomic response of post-larval (20 dph) Amphiprion ocellaris to temperatures associated with future climate change (+3 °C). Additionally, we utilized metatranscriptomic sequencing to investigate how the microbiome of the digestive tract changes at +3 °C. Our results show that the transcriptional response to elevated temperatures is highly tissue-specific, as the number of differentially expressed genes (DEGs) and gene functions varied amongst the brain (102), liver (1785), digestive tract (380), and muscle (447). All tissues displayed DEGs associated with thermal stress, as 23 heat-shock protein genes were upregulated in all tissues. Our results indicate that post-larval clownfish may experience liver fibrosis-like symptoms at +3 °C as genes associated with extracellular matrix structure, oxidative stress, inflammation, glucose transport, and metabolism were all upregulated. We also observe a shift in the digestive tract microbiome community structure, as Vibrio sp. replace Escherichia coli as the dominant bacteria. This shift is coupled with the dysregulation of various genes involved in immune response in the digestive tract. Overall, this study highlights post-larval clownfish will display tissue-specific transcriptomic responses to future increases in temperature, with many potentially harmful pathways activated at +3 °C.
Collapse
Affiliation(s)
- Billy Moore
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Jeffrey Jolly
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Michael Izumiyama
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Erina Kawai
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Timothy Ravasi
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Taewoo Ryu
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan.
| |
Collapse
|
8
|
Carrillo-Longoria JA, Gaylord G, Andrews L, Powell M. Effect of temperature on growth, survival, and chronic stress responses of Arctic Grayling juveniles. TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY 2024; 153:3-22. [PMID: 38854661 PMCID: PMC11156260 DOI: 10.1002/tafs.10453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 10/15/2023] [Indexed: 06/11/2024]
Abstract
Arctic Grayling Thymallus arcticus are Holarctically distributed, with a single native population in the conterminous United States occurring in the Big Hole River, Montana, where water temperatures can fluctuate throughout the year from 8 to 18 °C. A gradual increase in mean water temperature has been reported in this river over the past 20 years due to riparian habitat changes and climate change effects. We hypothesized that exposing Arctic Grayling to higher temperatures would result in lower survival, decreased growth, and increased stress responses. Over a 144-day trial, Arctic Grayling juveniles were subjected to water temperatures ranging from 8-26 °C to measure the effects on growth, survival, gene expression and antioxidant enzyme activity. Fish growth increased with increasing water temperature up to 18 °C, beyond which survival was reduced. Fish did not survive at temperatures above 22 °C. In response to temperatures above 16 °C, a 3-fold and 1.5-fold increase in gene expression was observed for superoxide dismutase (SOD) and glutathione peroxidase (GPx), respectively, but no changes were seen in the ratio of Heat Shock Protein 70 (HSP70) and heat shock protein 90 (HSP90) expression. Enzyme activities of SOD and GPx also rose at temperatures above 16 °C, indicating heightened oxidative stress. Catalase (CAT) gene expression and enzyme activity decreased with rising temperatures, suggesting a preference for the GPx pathway, as GPx could also be providing help with lipid peroxidation. An increase of Thiobarbituric acid reactive substances (TBARS) was also recorded, which corresponded with rising temperatures. Our findings thus underscore the vulnerability of Arctic Grayling to minor changes in water temperature. Further increases in mean water temperature could significantly compromise survival of Arctic Grayling in the Big Hole River.
Collapse
Affiliation(s)
- Javier-Alonso Carrillo-Longoria
- Aquaculture Research Institute, University of Idaho, Hagerman Fish Culture Experiment Station, 3059F National Fish Hatchery Rd, Hagerman, ID 83332, USA
| | - Gibson Gaylord
- U.S. Fish and Wildlife Service, Bozeman Fish Technology Center, Bozeman, MT, USA
| | - Lukas Andrews
- Idaho State University, 921 S. 8th Ave, Pocatello, ID 83209
| | - Madison Powell
- Aquaculture Research Institute, University of Idaho, Hagerman Fish Culture Experiment Station, 3059F National Fish Hatchery Rd, Hagerman, ID 83332, USA
| |
Collapse
|
9
|
Scheuffele H, Todd EV, Donald JA, Clark TD. Daily thermal variability does not modify long-term gene expression relative to stable thermal environments: A case study of a tropical fish. Comp Biochem Physiol A Mol Integr Physiol 2024; 287:111532. [PMID: 37816418 DOI: 10.1016/j.cbpa.2023.111532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/05/2023] [Accepted: 10/06/2023] [Indexed: 10/12/2023]
Abstract
Global warming is leading to an increase in the frequency and intensity of extreme weather events, magnifying the breadth of temperatures faced by ectotherms across days and seasons. Despite the importance and ecological relevance of diurnal thermal variability, the vast majority of knowledge on gene expression patterns and physiology stems from animals acclimated to constant temperatures or in the early stages of exposure to a new temperature regime. If heterothermal environments modulate responses differently from constant thermal environments, our existing capacity to forecast impacts of climate warming may be compromised. To address this knowledge gap, we acclimated barramundi (Lates calcarifer) to 23 °C, 29 °C (optimal), 35 °C and to thermal cycling conditions (23-35 °C daily with a mean of 29 °C) and sampled liver and white muscle tissue before acclimation and after 2 and 17 weeks of acclimation. NanoString nCounter technologies were used to measure expression of 20 genes related to metabolism, growth and maintenance of cellular homeostasis. Acclimation to cool and warm conditions caused predictable changes in whole-animal performance (metabolism and growth) and the underlying gene expression patterns. Acclimation to a cycling temperature regime did not change the molecular regulation of metabolism or growth compared with barramundi acclimated to constant 29 °C, nor did it cause any discernible effects on whole-animal performance. However, the heat shock response was higher in the former group, suggesting that barramundi under a daily temperature cycle have an increased need for cellular chaperoning to minimise detrimental effects of temperature on proteins. We conclude that the genetic regulation of metabolism and growth may be more dependent on the mean daily temperature than on the daily temperature range.
Collapse
Affiliation(s)
- Hanna Scheuffele
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC 3216, Australia.
| | - Erica V Todd
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC 3216, Australia
| | - John A Donald
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC 3216, Australia. https://twitter.com/JohnDon17043551
| | - Timothy D Clark
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC 3216, Australia. https://twitter.com/Timothy_D_Clark
| |
Collapse
|
10
|
Ramírez-Calero S, Paula JR, Otjacques E, Ravasi T, Rosa R, Schunter C. Neuromolecular responses in disrupted mutualistic cleaning interactions under future environmental conditions. BMC Biol 2023; 21:258. [PMID: 37957664 PMCID: PMC10644551 DOI: 10.1186/s12915-023-01761-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 11/03/2023] [Indexed: 11/15/2023] Open
Abstract
BACKGROUND Mutualistic interactions, which constitute some of the most advantageous interactions among fish species, are highly vulnerable to environmental changes. A key mutualistic interaction is the cleaning service rendered by the cleaner wrasse, Labroides dimidiatus, which involves intricate processes of social behaviour to remove ectoparasites from client fish and can be altered in near-future environmental conditions. Here, we evaluated the neuromolecular mechanisms behind the behavioural disruption of cleaning interactions in response to future environments. We subjected cleaner wrasses and surgeonfish (Acanthurus leucosternon, serving as clients) to elevated temperature (warming, 32 °C), increased levels of CO2 (high CO2, 1000 ppm), and a combined condition of elevated CO2 and temperature (warming and high CO2, 32 °C, and 1000 ppm) for 28 days. RESULTS Each of these conditions resulted in behavioural disruptions concerning the motivation to interact and the quality of interaction (high CO2 - 80.7%, warming - 92.6%, warming and high CO2 - 79.5%, p < 0.001). Using transcriptomics of the fore-, mid-, and hindbrain, we discovered that most transcriptional reprogramming in both species under warming conditions occurred primarily in the hind- and forebrain. The associated functions under warming were linked to stress, heat shock proteins, hypoxia, and behaviour. In contrast, elevated CO2 exposure affected a range of functions associated with GABA, behaviour, visual perception, thyroid hormones and circadian rhythm. Interestingly, in the combined warming and high CO2 condition, we did not observe any expression changes of behaviour. However, we did find signs of endoplasmic reticulum stress and apoptosis, suggesting not only an additive effect of the environmental conditions but also a trade-off between physiological performance and behaviour in the cleaner wrasse. CONCLUSIONS We show that impending environmental shifts can affect the behaviour and molecular processes that sustain mutualistic interactions between L. dimidiatus and its clients, which could have a cascading effect on their adaptation potential and possibly cause large-scale impacts on coral reef ecosystems.
Collapse
Affiliation(s)
- S Ramírez-Calero
- The Swire Institute of Marine Science, School of Biological Sciences, The University of Hong Kong, Pokfulam Rd, Hong Kong SAR, China
- Departament de Biologia Marina, Institut de Ciències del Mar (CSIC), Pg. Marítim de La Barceloneta 37-49, Barcelona, Spain
| | - J R Paula
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network, Laboratório Marítimo da Guia, Faculdade de Ciências, Universidade de Lisboa, Av. Nossa Senhora Do Cabo, 939, 2750-374, Cascais, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal
| | - E Otjacques
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network, Laboratório Marítimo da Guia, Faculdade de Ciências, Universidade de Lisboa, Av. Nossa Senhora Do Cabo, 939, 2750-374, Cascais, Portugal
- Carnegie Institution for Science, Division of Biosphere Sciences and Engineering, Church Laboratory, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA, 91125, USA
- Department of Life Sciences, MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network, University of Coimbra, 3000-456, Coimbra, Portugal
| | - T Ravasi
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-Son, Okinawa, 904-0495, Japan
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia
| | - R Rosa
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network, Laboratório Marítimo da Guia, Faculdade de Ciências, Universidade de Lisboa, Av. Nossa Senhora Do Cabo, 939, 2750-374, Cascais, Portugal
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal
| | - C Schunter
- The Swire Institute of Marine Science, School of Biological Sciences, The University of Hong Kong, Pokfulam Rd, Hong Kong SAR, China.
| |
Collapse
|
11
|
Pieniazek RH, Beach RK, Dycha GM, Mickle MF, Higgs DM. Navigating noisy waters: A review of field studies examining anthropogenic noise effects on wild fisha). THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2023; 154:2828-2842. [PMID: 37930177 DOI: 10.1121/10.0022254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 10/10/2023] [Indexed: 11/07/2023]
Abstract
Anthropogenic noise is globally increasing in aquatic ecosystems, and there is concern that it may have adverse consequences in many fish species, yet the effects of noise in field settings are not well understood. Concern over the applicability of laboratory-conducted bioacoustic experiments has led to a call for, and a recent increase in, field-based studies, but the results have been mixed, perhaps due to the wide variety of techniques used and species studied. Previous reviews have explored the behavioral, physiological, and/or anatomical costs of fish exposed to anthropogenic noise, but few, if any, have focused on the field techniques and sound sources themselves. This review, therefore, aims to summarize, quantify, and interpret field-based literature, highlight novel approaches, and provide recommendations for future research into the effects of noise on fish.
Collapse
Affiliation(s)
- R H Pieniazek
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada
| | - R K Beach
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada
| | - G M Dycha
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada
| | - M F Mickle
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada
| | - D M Higgs
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, Canada
| |
Collapse
|
12
|
Earhart ML, Blanchard TS, Strowbridge N, Sheena R, McMaster C, Staples B, Brauner CJ, Baker DW, Schulte PM. Heatwave resilience of juvenile white sturgeon is associated with epigenetic and transcriptional alterations. Sci Rep 2023; 13:15451. [PMID: 37723229 PMCID: PMC10507091 DOI: 10.1038/s41598-023-42652-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 09/13/2023] [Indexed: 09/20/2023] Open
Abstract
Heatwaves are increasing in frequency and severity, posing a significant threat to organisms globally. In aquatic environments heatwaves are often associated with low environmental oxygen, which is a deadly combination for fish. However, surprisingly little is known about the capacity of fishes to withstand these interacting stressors. This issue is particularly critical for species of extreme conservation concern such as sturgeon. We assessed the tolerance of juvenile white sturgeon from an endangered population to heatwave exposure and investigated how this exposure affects tolerance to additional acute stressors. We measured whole-animal thermal and hypoxic performance and underlying epigenetic and transcriptional mechanisms. Sturgeon exposed to a simulated heatwave had increased thermal tolerance and exhibited complete compensation for the effects of acute hypoxia. These changes were associated with an increase in mRNA levels involved in thermal and hypoxic stress (hsp90a, hsp90b, hsp70 and hif1a) following these stressors. Global DNA methylation was sensitive to heatwave exposure and rapidly responded to acute thermal and hypoxia stress over the course of an hour. These data demonstrate that juvenile white sturgeon exhibit substantial resilience to heatwaves, associated with improved cross-tolerance to additional acute stressors and involving rapid responses in both epigenetic and transcriptional mechanisms.
Collapse
Affiliation(s)
- Madison L Earhart
- Department of Zoology, University of British Columbia, Vancouver, Canada.
| | - Tessa S Blanchard
- Department of Zoology, University of British Columbia, Vancouver, Canada
| | - Nicholas Strowbridge
- Department of Zoology, University of British Columbia, Vancouver, Canada
- School of Biodiversity, One Health, and Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
| | - Ravinder Sheena
- Department of Zoology, University of British Columbia, Vancouver, Canada
| | - Clark McMaster
- Department of Zoology, University of British Columbia, Vancouver, Canada
| | - Benjamin Staples
- Department of Zoology, University of British Columbia, Vancouver, Canada
| | - Colin J Brauner
- Department of Zoology, University of British Columbia, Vancouver, Canada
| | - Daniel W Baker
- Department of Fisheries and Aquaculture, Vancouver Island University, Nanaimo, Canada
| | - Patricia M Schulte
- Department of Zoology, University of British Columbia, Vancouver, Canada
| |
Collapse
|
13
|
Hu S, Chen L, Bai Y, He Q, Liu Y, Xu P. Epigenetic mechanisms of lncRNA in response to thermal stress during embryogenesis of allotetraploid Cyprinus carpio. Genomics 2023; 115:110698. [PMID: 37595932 DOI: 10.1016/j.ygeno.2023.110698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 07/24/2023] [Accepted: 08/15/2023] [Indexed: 08/20/2023]
Abstract
Embryogenesis and epigenetic mechanisms of lncRNA may play an important role in the formation of temperature tolerance in allotetraploid Cyprinus carpio. To investigate the response of lncRNA to thermal stress during embryogenesis of C. carpio, transcriptome sequencing was performed on 81 embryo or larva samples from different early development stages and temperatures. We identified 45,097 lncRNAs and analyzed transcriptome variation during embryogenesis. Stage-specific and temperature-specific DE lncRNAs and DEGs were screened. GO and KEGG analysis identified numerous pathways involved in thermal stress. Temperature-specific regulation of cis-/trans-/antisense lncRNAs was analyzed. Interaction network analysis identified 6 hub lncRNAs and many hub genes, such as cdk1 and hsf1. Decreased expression of many essential genes regulated by lncRNAs may lead to the death of embryos at 33 °C. Our findings provide new insights into the regulation of lncRNA in thermal stress response during embryogenesis and contribute to the understanding of environmental adaptation of allotetraploid species.
Collapse
Affiliation(s)
- Shuimu Hu
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Lin Chen
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Yulin Bai
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Qian He
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Yue Liu
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Peng Xu
- State Key Laboratory of Mariculture Breeding, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China; Fujian Key Laboratory of Genetics and Breeding of Marine Organisms, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China.
| |
Collapse
|
14
|
Brodie R, Chery ML, Habiba U, Pradhan A. Rising surface temperatures lead to more frequent and longer burrow retreats in males of the fiddler crab, Minuca pugnax. J Therm Biol 2023; 116:103639. [PMID: 37454479 DOI: 10.1016/j.jtherbio.2023.103639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 06/13/2023] [Accepted: 06/14/2023] [Indexed: 07/18/2023]
Abstract
The fiddler crab Minuca pugnax occupies thermally unstable mudflat habitats along the eastern United States coastline, where it uses behavioral thermoregulation, including burrow retreats, to manage body temperature (Tb). We explored the relationship between frequency of burrow use and environmental conditions, including burrow and surface temperatures, relative tidal height, and time of day, by twenty male M. pugnax in breeding areas around Flax Pond, New York, USA. We found a highly significant positive correlation between burrow use and surface temperature, with a clear shift to longer times underground above 32 °C degrees. We also experimentally heated live crabs in the laboratory and allowed them to retreat into cooled artificial burrows while continuously measuring Tb. Laboratory data on cooling times were compared to field observations of burrow retreat durations. The median burrow duration in the field of 2.74 min was enough time for our laboratory crabs to capture over 70% of the cooling potential of artificial burrows 10 or 15 °C below Tb. Because crab bodies in burrows experience exponential declines in Tb due to Newton's law of cooling, there are diminishing returns to remaining in a burrow, and many crabs probably leave before coming to equilibrium. For M. pugnax, burrow retreats reduce time spent feeding and courting, activities that only occur on the surface. Current concerns about the impacts of climate change on animals include whether compensatory mechanisms, like more frequent and longer burrow retreats, will come at the cost of other behaviors necessary for survival and reproduction.
Collapse
Affiliation(s)
- Renae Brodie
- Biology Department, Mount Holyoke College, South Hadley, MA, 01075, United States.
| | - Myrha-Lissa Chery
- Biology Department, Mount Holyoke College, South Hadley, MA, 01075, United States
| | - Umme Habiba
- Biology Department, Mount Holyoke College, South Hadley, MA, 01075, United States
| | - Adishri Pradhan
- Environmental Engineering, College of Engineering, Cornell University, 420 College Street, Ithaca, NY, 14850, USA
| |
Collapse
|
15
|
Wei Z, Fang Y, Shi W, Chu Z, Zhao B. Transcriptional Modulation Reveals Physiological Responses to Temperature Adaptation in Acrossocheilus fasciatus. Int J Mol Sci 2023; 24:11622. [PMID: 37511383 PMCID: PMC10380296 DOI: 10.3390/ijms241411622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 06/28/2023] [Accepted: 06/28/2023] [Indexed: 07/30/2023] Open
Abstract
In order to explore the molecular regulatory mechanism of temperature acclimation under long-term temperature stress in Acrossocheilus fasciatus, this study used high-throughput sequencing technology to analyze 60 days of breeding under five temperature conditions (12 °C, 16 °C, 20 °C, 24 °C, 28 °C). Compared with 20 °C, 9202, 4959 differentially expressed genes (DEGs) were discovered in low-temperature groups (12 °C, 16 °C), whereas 133 and 878 DEGs were discovered in high-temperature groups (24 °C, 28 °C), respectively. The KEGG functional enrichment analysis revealed that DEGs were primarily enriched in tight junction, PI3 K-Akt signaling pathway and protein digestion and absorption in low-temperature groups, and mainly enriched in proximal tubule bicarbonate reclamation, protein digestion and absorption, and HIF-1 signaling pathway in high-temperature groups. The viability of transcriptome sequencing-based screening of DEGs for temperature adaptation in A. fasciatus was shown by the selection of eight DEGs for further validation by quantitative real-time PCR (qRT-PCR), the findings of which were consistent with the RNA-seq data. According to the findings, protein digestion and absorption were primarily regulated by temperature variations, physiological stress was a significant regulator in regulation under high-temperature stress, and the immune system was a significant regulator in regulation under low-temperature stress. The transcriptional patterns of A. fasciatus under temperature stress are revealed in this study. This knowledge is crucial for understanding how A. fasciatus adapts to temperature and can help us better comprehend the environmental difficulties that A. fasciatus adaptation faces.
Collapse
Affiliation(s)
- Zhenzhu Wei
- College of Fisheries, Zhejiang Ocean University, Zhoushan 316022, China
| | - Yi Fang
- Zhejiang Marine Fisheries Research Institute, Zhoushan 316021, China
| | - Wei Shi
- College of Fisheries, Zhejiang Ocean University, Zhoushan 316022, China
| | - Zhangjie Chu
- College of Fisheries, Zhejiang Ocean University, Zhoushan 316022, China
| | - Bo Zhao
- College of Fisheries, Zhejiang Ocean University, Zhoushan 316022, China
| |
Collapse
|
16
|
He Q, Wang S, Feng K, Michaletz ST, Hou W, Zhang W, Li F, Zhang Y, Wang D, Peng X, Yang X, Deng Y. High speciation rate of niche specialists in hot springs. THE ISME JOURNAL 2023:10.1038/s41396-023-01447-4. [PMID: 37286739 DOI: 10.1038/s41396-023-01447-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/09/2023]
Abstract
Ecological and evolutionary processes simultaneously regulate microbial diversity, but the evolutionary processes and their driving forces remain largely unexplored. Here we investigated the ecological and evolutionary characteristics of microbiota in hot springs spanning a broad temperature range (54.8-80 °C) by sequencing the 16S rRNA genes. Our results demonstrated that niche specialists and niche generalists are embedded in a complex interaction of ecological and evolutionary dynamics. On the thermal tolerance niche axis, thermal (T) sensitive (at a specific temperature) versus T-resistant (at least in five temperatures) species were characterized by different niche breadth, community abundance and dispersal potential, consequently differing in potential evolutionary trajectory. The niche-specialized T-sensitive species experienced strong temperature barriers, leading to completely species shift and high fitness but low abundant communities at each temperature ("home niche"), and such trade-offs thus reinforced peak performance, as evidenced by high speciation across temperatures and increasing diversification potential with temperature. In contrast, T-resistant species are advantageous of niche expansion but with poor local performance, as shown by wide niche breadth with high extinction, indicating these niche generalists are "jack-of-all-trades, master-of-none". Despite of such differences, the T-sensitive and T-resistant species are evolutionarily interacted. Specifically, the continuous transition from T-sensitive to T-resistant species insured the exclusion probability of T-resistant species at a relatively constant level across temperatures. The co-evolution and co-adaptation of T-sensitive and T-resistant species were in line with the red queen theory. Collectively, our findings demonstrate that high speciation of niche specialists could alleviate the environmental-filtering-induced negative effect on diversity.
Collapse
Affiliation(s)
- Qing He
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China
| | - Shang Wang
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China.
| | - Kai Feng
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
| | - Sean T Michaletz
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Weiguo Hou
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, 100083, China
| | - Wenhui Zhang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, 100083, China
| | - Fangru Li
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, 100083, China
| | - Yidi Zhang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, 100083, China
| | - Danrui Wang
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China
| | - Xi Peng
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China
| | - Xingsheng Yang
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China
| | - Ye Deng
- CAS Key Laboratory for Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences (CAS), Beijing, 100085, China.
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China.
| |
Collapse
|
17
|
Moore B, Jolly J, Izumiyama M, Kawai E, Ryu T, Ravasi T. Clownfish larvae exhibit faster growth, higher metabolic rates and altered gene expression under future ocean warming. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162296. [PMID: 36801344 DOI: 10.1016/j.scitotenv.2023.162296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/08/2023] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
Increasing ocean temperatures have been demonstrated to have a range of negative impacts on coral reef fishes. However, despite a wealth of studies of juvenile/adult reef fish, studies of how early developmental stages respond to ocean warming are limited. As overall population persistence is influenced by the development of early life stages, detailed studies of larval responses to ocean warming are essential. Here, in an aquaria-based study we investigate how temperatures associated with future warming and present-day marine heatwaves (+3 °C) impact the growth, metabolic rate, and transcriptome of 6 discrete developmental stages of clownfish larvae (Amphiprion ocellaris). A total of 6 clutches of larvae were assessed, with 897 larvae imaged, 262 larvae undergoing metabolic testing and 108 larvae subject to transcriptome sequencing. Our results show that larvae reared at +3 °C grow and develop significantly faster and exhibit higher metabolic rates than those in control conditions. Finally, we highlight the molecular mechanisms underpinning the response of larvae from different developmental stages to higher temperatures, with genes associated with metabolism, neurotransmission, heat stress and epigenetic reprogramming differentially expressed at +3 °C. Overall, these results indicate that clownfish development could be altered under future warming, with developmental rate, metabolic rate, and gene expression all affected. Such changes may lead to altered larval dispersal, changes in settlement time and increased energetic costs.
Collapse
Affiliation(s)
- Billy Moore
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Jeffrey Jolly
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Michael Izumiyama
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Erina Kawai
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
| | - Taewoo Ryu
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan.
| | - Timothy Ravasi
- Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811, Australia.
| |
Collapse
|
18
|
Leung C, Guscelli E, Chabot D, Bourret A, Calosi P, Parent GJ. The lack of genetic variation underlying thermal transcriptomic plasticity suggests limited adaptability of the Northern shrimp, Pandalus borealis. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2023.1125134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023] Open
Abstract
IntroductionGenetic variation underlies the populations’ potential to adapt to and persist in a changing environment, while phenotypic plasticity can play a key role in buffering the negative impacts of such change at the individual level.MethodsWe investigated the role of genetic variation in the thermal response of the northern shrimp Pandalus borealis, an ectotherm species distributed in the Arctic and North Atlantic Oceans. More specifically, we estimated the proportion transcriptomic responses explained by genetic variance of female shrimp from three origins after 30 days of exposure to three temperature treatments.ResultsWe characterized the P. borealis transcriptome (170,377 transcripts, of which 27.48% were functionally annotated) and then detected a total of 1,607 and 907 differentially expressed transcripts between temperatures and origins, respectively. Shrimp from different origins displayed high but similar level of transcriptomic plasticity in response to elevated temperatures. Differences in transcript expression among origins were not correlated to population genetic differentiation or diversity but to environmental conditions at origin during sampling.DiscussionThe lack of genetic variation explaining thermal plasticity suggests limited adaptability in this species’ response to future environmental changes. These results together with higher mortality observed at the highest temperature indicate that the thermal niche of P. borealis will likely be restricted to higher latitudes in the future. This prediction concurs with current decreases in abundance observed at the southern edge of this species geographical distribution, as it is for other cold-adapted crustaceans.
Collapse
|
19
|
Penny FM, Bugg WS, Kieffer JD, Jeffries KM, Pavey SA. Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2023; 45:101058. [PMID: 36657229 DOI: 10.1016/j.cbd.2023.101058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 01/10/2023] [Accepted: 01/10/2023] [Indexed: 01/18/2023]
Abstract
In comparison to most modern teleost fishes, sturgeons generally display muted stress responses. While a muted stress response appears to be ubiquitous across sturgeon species, the mechanisms unpinning this muted response have not been fully described. The objective of this study was to determine the patterns of hematological and transcriptomic change in muscle tissue following an acute high temperature stress (critical thermal maxima; CTmax) in two locally co-occurring but evolutionarily distant sturgeon species (Atlantic and shortnose sturgeon). The most striking pattern found was that Atlantic sturgeon launched a vigorous transcriptomic response at CTmax, whereas shortnose sturgeon did not. In contrast, shortnose sturgeon have significantly higher cortisol than Atlantics at CTmax, reconfirming that shortnose have a less muted cortisol stress response. Atlantic sturgeon downregulated a number of processes, included RNA creation/processing, methylation and immune processes. Furthermore, a number of genes related to heat shock proteins were differentially expressed at CTmax in Atlantic sturgeon but none of these genes were significantly changed in shortnose sturgeon. We also note that the majority of differentially expressed genes of both species are undescribed and have no known orthologues. These results suggest that, while sturgeons as a whole may show muted stress responses, individual sturgeon species likely use different inducible strategies to cope with acute high temperature stress.
Collapse
Affiliation(s)
- F M Penny
- Department of Biological Sciences and Canadian Rivers Institute (CRI Genomics), University of New Brunswick, Saint John, New Brunswick E2L 4L5, Canada.
| | - W S Bugg
- Department of Biological Sciences, University of Manitoba, 50 Sifton Road, Winnipeg, Manitoba R3T 2N2, Canada
| | - J D Kieffer
- Department of Biological Sciences (MADSAM Lab), University of New Brunswick, Saint John, New Brunswick E2L 4L5, Canada
| | - K M Jeffries
- Department of Biological Sciences, University of Manitoba, 50 Sifton Road, Winnipeg, Manitoba R3T 2N2, Canada
| | - S A Pavey
- Department of Biological Sciences and Canadian Rivers Institute (CRI Genomics), University of New Brunswick, Saint John, New Brunswick E2L 4L5, Canada
| |
Collapse
|
20
|
Canosa LF, Bertucci JI. The effect of environmental stressors on growth in fish and its endocrine control. Front Endocrinol (Lausanne) 2023; 14:1109461. [PMID: 37065755 PMCID: PMC10098185 DOI: 10.3389/fendo.2023.1109461] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Accepted: 03/13/2023] [Indexed: 04/03/2023] Open
Abstract
Fish body growth is a trait of major importance for individual survival and reproduction. It has implications in population, ecology, and evolution. Somatic growth is controlled by the GH/IGF endocrine axis and is influenced by nutrition, feeding, and reproductive-regulating hormones as well as abiotic factors such as temperature, oxygen levels, and salinity. Global climate change and anthropogenic pollutants will modify environmental conditions affecting directly or indirectly fish growth performance. In the present review, we offer an overview of somatic growth and its interplay with the feeding regulatory axis and summarize the effects of global warming and the main anthropogenic pollutants on these endocrine axes.
Collapse
Affiliation(s)
- Luis Fabián Canosa
- Instituto Tecnológico Chascomús (INTECH), CONICET-EByNT-UNSAM, Chascomús, Argentina
- *Correspondence: Luis Fabián Canosa, ; Juan Ignacio Bertucci,
| | - Juan Ignacio Bertucci
- Centro Oceanográfico de Vigo, Instituto Español de Oceanografía - Consejo Superior de Investigaciones Científicas (IEO-CSIC), Vigo, Spain
- *Correspondence: Luis Fabián Canosa, ; Juan Ignacio Bertucci,
| |
Collapse
|
21
|
Hu J, Barrett RDH. The role of plastic and evolved DNA methylation in parallel adaptation of threespine stickleback (Gasterosteus aculeatus). Mol Ecol 2022; 32:1581-1591. [PMID: 36560898 DOI: 10.1111/mec.16832] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 12/17/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022]
Abstract
Repeated phenotypic patterns among populations undergoing parallel evolution in similar environments provide support for the deterministic role of natural selection. Epigenetic modifications can mediate plastic and evolved phenotypic responses to environmental change and might make important contributions to parallel adaptation. While many studies have explored the genetic basis of repeated phenotypic divergence, the role of epigenetic processes during parallel adaptation remains unclear. The parallel evolution of freshwater ecotypes of threespine stickleback fish (Gasterosteus aculeatus) following colonization of thousands of lakes and streams from the ocean is a classic example of parallel phenotypic and genotypic adaptation. To investigate epigenetic modifications during parallel adaptation of threespine stickleback, we reanalysed three independent data sets that investigated DNA methylation variation between marine and freshwater ecotypes. Although we found widespread methylation differentiation between ecotypes, there was no significant tendency for CpG sites associated with repeated methylation differentiation across studies to be parallel versus nonparallel. To next investigate the role of plastic versus evolved changes in methylation during freshwater adaptation, we explored if CpG sites exhibiting methylation plasticity during salinity change were more likely to also show evolutionary divergence in methylation between ecotypes. The directions of divergence between ecotypes were generally in the opposite direction to those observed for plasticity when ecotypes were challenged with non-native salinity conditions, suggesting that most plastic responses are likely to be maladaptive during colonization of new environments. Finally, we found a greater number of CpG sites showing evolved changes when ancestral marine ecotypes are acclimated to freshwater environments, whereas plastic changes predominate when derived freshwater ecotypes transition back to their ancestral marine environments. These findings provide evidence for an epigenetic contribution to parallel adaptation and demonstrate the contrasting roles of plastic and evolved methylation differences during adaptation to new environments.
Collapse
Affiliation(s)
- Juntao Hu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Center of Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, P. R. China
| | - Rowan D H Barrett
- Redpath Museum and Department of Biology, McGill University, Montreal, Quebec, Canada
| |
Collapse
|
22
|
Ratko J, Gonçalves da Silva N, Ortiz da Silva D, Paula Nascimento Corrêa A, Mauro Carneiro Pereira D, Cristina Schleger I, Karla Alves Neundorf A, Herrerias T, Rita Corso C, Rosa Dmengeon Pedreiro de Souza M, Donatti L. Can high- and low-temperature thermal stress modulate the antioxidant defense response of Astyanax lacustris brain? Brain Res 2022; 1797:148118. [PMID: 36240883 DOI: 10.1016/j.brainres.2022.148118] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 10/05/2022] [Accepted: 10/07/2022] [Indexed: 11/19/2022]
Abstract
Change in temperature of aquatic environment have impacts on the physiology of fish, especially in the brain, which is a vital organ and prone to oxidative damage. Astyanax lacustris is a freshwater fish that play an important role in the food market and has been increasingly used in fish farms, besides environmental monitoring studies. Therefore, this study aimed to evaluate the responses of antioxidant biomarkers and products of the oxidative process in the brains A. lacustris subjected to thermal shock. The specimens were obtained from artificial farming lakes and subjected to shock induced by exposure to high (31 °C ± 0.5) and low (15 °C ± 0.5) temperature for 2, 6, 12, 24, 48, 72 and 96 h; control group were maintained at 23 °C ± 0.5. At 31 °C, glutathione-related enzymes were more responsive, suggested by the change activity of GPx and G6PDH enzymes, in addition to GSH levels. At 15 °C, enzymes of the first line of defense were more active, evidenced by the change CAT activity. No significant changes were detected in the levels of ROS, LPO and PCO. These results indicate that the brains of A. lacustris have an efficient antioxidant defense system with the ability to acclimatize to the temperatures tested.
Collapse
Affiliation(s)
- Jonathan Ratko
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil
| | - Niumaique Gonçalves da Silva
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil
| | - Diego Ortiz da Silva
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Ecology and Conservation, Federal University of Paraná, Curitiba, Brazil
| | - Ana Paula Nascimento Corrêa
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Ecology and Conservation, Federal University of Paraná, Curitiba, Brazil
| | - Diego Mauro Carneiro Pereira
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil
| | - Ieda Cristina Schleger
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil
| | - Ananda Karla Alves Neundorf
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Ecology and Conservation, Federal University of Paraná, Curitiba, Brazil
| | | | - Claudia Rita Corso
- Department of Pharmacology, Federal University of Paraná, Curitiba, Paraná, Brazil
| | - Maria Rosa Dmengeon Pedreiro de Souza
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil
| | - Lucélia Donatti
- Laboratory of Adaptive Biology, Department of Cell Biology, Federal University of Paraná, Curitiba, Paraná, Brazil; Postgraduate Program on Cellular and Molecular Biology, Federal University of Paraná, Curitiba, Brazil; Postgraduate Program on Ecology and Conservation, Federal University of Paraná, Curitiba, Brazil.
| |
Collapse
|
23
|
Kanno Y, Kim S, Pregler KC. Sub‐seasonal correlation between growth and survival in three sympatric aquatic ectotherms. OIKOS 2022. [DOI: 10.1111/oik.09685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Yoichiro Kanno
- Dept of Fish, Wildlife and Conservation Biology, Colorado State Univ. Fort Collins CO USA
- Dept of Forestry and Environmental Conservation, Clemson Univ. Clemson SC USA
| | - Seoghyun Kim
- Dept of Fish, Wildlife and Conservation Biology, Colorado State Univ. Fort Collins CO USA
- Dept of Forestry and Environmental Conservation, Clemson Univ. Clemson SC USA
| | - Kasey C. Pregler
- Dept of Fish, Wildlife and Conservation Biology, Colorado State Univ. Fort Collins CO USA
- Dept of Forestry and Environmental Conservation, Clemson Univ. Clemson SC USA
| |
Collapse
|
24
|
Oomen RA, Knutsen H, Olsen EM, Jentoft S, Stenseth NC, Hutchings JA. Warming Accelerates the Onset of the Molecular Stress Response and Increases Mortality of Larval Atlantic Cod. Integr Comp Biol 2022; 62:1784-1801. [PMID: 36130874 PMCID: PMC9801969 DOI: 10.1093/icb/icac145] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 08/24/2022] [Accepted: 08/27/2022] [Indexed: 01/05/2023] Open
Abstract
Temperature profoundly affects ectotherm physiology. Although differential thermal responses influence fitness, thus driving population dynamics and species distributions, our understanding of the molecular architecture underlying these responses is limited, especially during the critical larval stage. Here, using RNA-sequencing of laboratory-reared Atlantic cod (Gadus morhua) larvae of wild origin, we find changes in gene expression in thousands of transcripts consistent with a severe cellular stress response at both ambient and projected (+2°C and +4°C) temperatures. In addition, specific responses to stress, heat, and hypoxia were commonly identified in gene ontology enrichment analyses and 33 of the 44 genes comprising the minimum stress proteome of all organisms were upregulated. Earlier onset of the stress response was evident at higher temperatures; concomitant increased growth and mortality suggests a reduction in fitness. Temporal differences in gene expression levels do not correspond to differences in growing degree days, suggesting negative physiological consequences of warming beyond accelerated development. Because gene expression is costly, we infer that the upregulation of thousands of transcripts in response to warming in larval cod might act as an energetic drain. We hypothesize that the energetically costly stress response, coupled with increased growth rate at warmer temperatures, leads to faster depletion of energy reserves and increased risk of mortality in larval cod. As sea surface temperatures continue to rise over the next century, reduced fitness of Atlantic cod larvae might lead to population declines in this ecologically and socioeconomically important species. Further, our findings expand our understanding of transcriptomic responses to temperature by ectothermic vertebrate larvae beyond the critical first-feeding stage, a time when organisms begin balancing the energetic demands of growth, foraging, development, and maintenance. Linking the molecular basis of a thermal response to key fitness-related traits is fundamentally important to predicting how global warming will affect ectotherms.
Collapse
Affiliation(s)
| | - Halvor Knutsen
- Center for Coastal Research (CCR), Department of Natural Sciences, University of Agder, 4604 Kristiansand, Norway,Institute of Marine Research, Nye Flødevigveien 20, 4817 His, Norway
| | - Esben M Olsen
- Center for Coastal Research (CCR), Department of Natural Sciences, University of Agder, 4604 Kristiansand, Norway,Institute of Marine Research, Nye Flødevigveien 20, 4817 His, Norway
| | - Sissel Jentoft
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, 0371 Oslo, Norway
| | - Nils Chr Stenseth
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, 0371 Oslo, Norway,Center for Coastal Research (CCR), Department of Natural Sciences, University of Agder, 4604 Kristiansand, Norway
| | - Jeffrey A Hutchings
- Center for Coastal Research (CCR), Department of Natural Sciences, University of Agder, 4604 Kristiansand, Norway,Institute of Marine Research, Nye Flødevigveien 20, 4817 His, Norway,Department of Biology, Dalhousie University, Halifax, NS B3H 4J1, Canada
| |
Collapse
|
25
|
Lin Z, Nie H, Zhang Y, Yin Z, Yan X. Genome-wide identification and analysis of HECT E3 ubiquitin ligase gene family in Ruditapes philippinarum and their involvement in the response to heat stress and Vibrio anguillarum infection. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2022; 43:101012. [PMID: 35849989 DOI: 10.1016/j.cbd.2022.101012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/06/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
E3 ubiquitin ligase (E3s) plays an important role in ubiquitin proteasome pathway, proteins containing homologous E6-AP carboxyl terminus (HECT) domains. However, the role of HECT E3 ubiquitin ligase in mollusk was rarely explored. In this study, we performed a genome-wide analysis of the HECT domain-containing gene in Ruditapes philippinarum to identify and predict the structural and functional characterization of HECT genes in response to abiotic and biotic stress. A total of sixteen members of HECT gene family were identified and analyzed for the gene structure, phylogenetic relation, three-dimensional structure, protein interaction network, and expression patterns. Experimental results demonstrated that Rph.HUWE1, Rph.HECTD1, Rph.Ubr5 were significantly up-regulated in response to heat stress and bacterial challenge. Taken together, our data provide insights into the potential function of HECT E3 ligase in heat stress and Vibrio anguillarum infection.
Collapse
Affiliation(s)
- Zihan Lin
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China
| | - Hongtao Nie
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China.
| | - Yanming Zhang
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China
| | - Zhihui Yin
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China
| | - Xiwu Yan
- Engineering and Technology Research Center of Shellfish Breeding in Liaoning Province, College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China
| |
Collapse
|
26
|
Costábile A, Castellano M, Aversa-Marnai M, Quartiani I, Conijeski D, Perretta A, Villarino A, Silva-Álvarez V, Ferreira AM. A different transcriptional landscape sheds light on Russian sturgeon (Acipenser gueldenstaedtii) mechanisms to cope with bacterial infection and chronic heat stress. FISH & SHELLFISH IMMUNOLOGY 2022; 128:505-522. [PMID: 35985628 DOI: 10.1016/j.fsi.2022.08.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 08/09/2022] [Accepted: 08/11/2022] [Indexed: 06/15/2023]
Abstract
Sturgeons are chondrostean fish of high economic value and critically endangered due to anthropogenic activities, which has led to sturgeon aquaculture development. Russian sturgeon (Acipenser gueldenstaedtii), the second most important species reared for caviar, is successfully farmed in subtropical countries, including Uruguay. However, during the Uruguayan summer, sturgeons face intolerable warmer temperatures that weaken their defences and favour infections by opportunistic pathogens, increasing fish mortality and farm economic losses. Since innate immunity is paramount in fish, for which the liver plays a key role, we used deep RNA sequencing to analyse differentially expressed genes in the liver of Russian sturgeons exposed to chronic heat stress and challenged with Aeromonas hydrophila. We assembled 149.615 unigenes in the Russian sturgeon liver transcriptome and found that metabolism and immune defence pathways are among the top five biological processes taking place in the liver. Chronic heat stress provoked profound effects on liver biological functions, up-regulating genes related to protein folding, heat shock response and lipid and protein metabolism to meet energy demands for coping with heat stress. Besides, long-term exposure to heat stress led to cell damage triggering liver inflammation and diminishing liver ability to mount an innate response to A. hydrophila challenge. Accordingly, the reprogramming of liver metabolism over an extended period had detrimental effects on fish health, resulting in weight loss and mortality, with the latter increasing after A. hydrophila challenge. To our knowledge, this is the first transcriptomic study describing how chronic heat-stressed sturgeons respond to a bacterial challenge, suggesting that liver metabolism alterations have a negative impact on the innate anti-bacterial response.
Collapse
Affiliation(s)
- Alicia Costábile
- Sección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, CP 11400, Montevideo, Uruguay
| | - Mauricio Castellano
- Unidad de Inmunología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, CP 11600, Montevideo, Uruguay; Área Inmunología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, CP 11600, Montevideo, Uruguay; Sección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, CP 11400, Montevideo, Uruguay
| | - Marcio Aversa-Marnai
- Unidad de Inmunología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, CP 11600, Montevideo, Uruguay; Área Inmunología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, CP 11600, Montevideo, Uruguay
| | - Ignacio Quartiani
- Unidad de Patología, Biología y Cultivo de Organismos Acuáticos, Departamento de Ciencia y Tecnología de los Alimentos, Facultad de Veterinaria, Universidad de la República, CP 11300, Montevideo, Uruguay
| | | | - Alejandro Perretta
- Unidad de Patología, Biología y Cultivo de Organismos Acuáticos, Departamento de Ciencia y Tecnología de los Alimentos, Facultad de Veterinaria, Universidad de la República, CP 11300, Montevideo, Uruguay
| | - Andrea Villarino
- Sección Bioquímica y Biología Molecular, Facultad de Ciencias, Universidad de la República, CP 11400, Montevideo, Uruguay
| | - Valeria Silva-Álvarez
- Unidad de Inmunología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, CP 11600, Montevideo, Uruguay; Área Inmunología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, CP 11600, Montevideo, Uruguay.
| | - Ana María Ferreira
- Unidad de Inmunología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, CP 11600, Montevideo, Uruguay; Área Inmunología, Departamento de Biociencias, Facultad de Química, Universidad de la República, Montevideo, CP 11600, Montevideo, Uruguay.
| |
Collapse
|
27
|
Del Vecchio G, Galindo-Sánchez CE, Tripp-Valdez MA, López-Landavery EA, Rosas C, Mascaró M. Transcriptomic response in thermally challenged seahorses Hippocampus erectus: The effect of magnitude and rate of temperature change. Comp Biochem Physiol B Biochem Mol Biol 2022; 262:110771. [PMID: 35691555 DOI: 10.1016/j.cbpb.2022.110771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 05/17/2022] [Accepted: 06/06/2022] [Indexed: 10/18/2022]
Abstract
Hippocampus erectus inhabiting the shallow coastal waters of the southern Gulf of Mexico are naturally exposed to marked temperature variations occurring in different temporal scales. Under such heterogeneous conditions, a series of physiological and biochemical adjustments take place to restore and maintain homeostasis. This study investigated the molecular mechanisms involved in the response of H. erectus to increased temperature using transcriptome analysis based on RNA-Seq technology. Data was obtained from seahorses after 0.5-h exposure to combinations of different target temperatures (26 °C: control, and increased to 30 and 33 °C) and rates of thermal increase (abrupt: < 5 min; gradual: 1-1.5 °C every 3 h). The transcriptome of seahorses was assembled de novo using Trinity software to obtain 29,211 genes and 30,479 transcripts comprising 27,520,965 assembled bases. Seahorse exposure to both 30 and 33 °C triggered characteristic processes of the cellular stress response, regardless of the rate of thermal change. The transcriptomic profiles of H. erectus suggest an arrest of muscle development processes, the activation of heat shock proteins, and a switch to anaerobic metabolism within the first 0.5 h of exposure to target temperatures to ensure energy supply. Interestingly, apoptotic processes involving caspase were activated principally in gradual treatments, suggesting that prolonged exposure to even sublethal temperatures results in the accumulation of deleterious effects that may eventually terminate in cellular death. Results herein validate 30 °C and 33 °C as potential upper limits of thermal tolerance for H. erectus at the southernmost boundary of its geographic distribution.
Collapse
Affiliation(s)
- G Del Vecchio
- Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - C E Galindo-Sánchez
- Departamento de Biotecnología Marina, Laboratorio de Genómica Funcional, CICESE, Ensenada, Baja California, Mexico. https://twitter.com/ClaraGalindo3
| | - M A Tripp-Valdez
- Departamento de Biotecnología Marina, Laboratorio de Genómica Funcional, CICESE, Ensenada, Baja California, Mexico. https://twitter.com/MiguelTripp
| | - E A López-Landavery
- Departamento de Biotecnología Marina, Laboratorio de Genómica Funcional, CICESE, Ensenada, Baja California, Mexico. https://twitter.com/EdgarLo30205255
| | - C Rosas
- Unidad Multidisciplinaria de Docencia e Investigación-Sisal, Facultad de Ciencias, Universidad Nacional Autónoma de México, Sisal, Yucatán, Mexico. https://twitter.com/DrCarlosRosasV
| | - M Mascaró
- Unidad Multidisciplinaria de Docencia e Investigación-Sisal, Facultad de Ciencias, Universidad Nacional Autónoma de México, Sisal, Yucatán, Mexico.
| |
Collapse
|
28
|
L E E CE, Downey K, Colby RS, Freire CA, Nichols S, Burgess MN, Judy KJ. Recognizing salinity threats in the climate crisis. Integr Comp Biol 2022; 62:441-460. [PMID: 35640911 DOI: 10.1093/icb/icac069] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 05/22/2022] [Accepted: 05/23/2022] [Indexed: 11/14/2022] Open
Abstract
Climate change is causing habitat salinity to transform at unprecedented rates across the globe. While much of the research on climate change has focused on rapid shifts in temperature, far less attention has focused on the effects of changes in environmental salinity. Consequently, predictive studies on the physiological, evolutionary, and migratory responses of organisms and populations to the threats of salinity change are relatively lacking. This omission represents a major oversight, given that salinity is among the most important factors that define biogeographic boundaries in aquatic habitats. In this perspective, we briefly touch on responses of organisms and populations to rapid changes in salinity occurring on contemporary time scales. We then discuss factors that might confer resilience to certain taxa, enabling them to survive rapid salinity shifts. Next, we consider approaches for predicting how geographic distributions will shift in response to salinity change. Finally, we identify additional data that are needed to make better predictions in the future. Future studies on climate change should account for the multiple environmental factors that are rapidly changing, especially habitat salinity.
Collapse
Affiliation(s)
- Carol Eunmi L E E
- Department of Integrative Biology, University of Wisconsin, Madison, WI, USA
| | - Kala Downey
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Rebecca Smith Colby
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Carolina A Freire
- Department of Physiology, Federal University of Paraná, Curitiba, PR, Brazil
| | - Sarah Nichols
- Edward Grey Institute of Field Ornithology, Department of Zoology, University of Oxford, Oxford, UK.,Department of Life Sciences, Natural History Museum, London, UK
| | - Michael N Burgess
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Kathryn J Judy
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| |
Collapse
|
29
|
Lipshutz SE, Howell CR, Buechlein AM, Rusch DB, Rosvall KA, Derryberry EP. How thermal challenges change gene regulation in the songbird brain and gonad: implications for sexual selection in our changing world. Mol Ecol 2022; 31:3613-3626. [PMID: 35567363 DOI: 10.1111/mec.16506] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 04/15/2022] [Accepted: 05/04/2022] [Indexed: 11/29/2022]
Abstract
In a rapidly warming world, exposure to high temperatures may impact fitness, but the gene regulatory mechanisms that link sublethal heat to sexually selected traits are not well understood, particularly in endothermic animals. Our experiment used zebra finches (Taeniopygia guttata), songbirds that experience extreme temperature fluctuations in their native Australia. We exposed captive males to an acute thermal challenge (43°C) compared with thermoneutral (35°C) and lower (27°C) temperatures. We found significantly more heat dissipation behaviors at 43°C, a temperature previously shown to reduce song production and fertility, and more heat retention behaviors at 27°C. Next, we characterized transcriptomic responses in tissues important for mating effort - the posterior telencephalon, for its role in song production, and the testis, for its role in fertility and hormone production. Differential expression of hundreds of genes in the testes, but few in the brain, suggest the brain is less responsive to extreme temperatures. Nevertheless, gene network analyses revealed that expression related to dopaminergic signaling in the brain co-varied with heat dissipation behaviors, providing a mechanism by which temporary thermal challenges may alter motivational circuits for song production. In both brain and testis, we observed correlations between thermally sensitive gene networks and individual differences in thermoregulatory behavior. Although we cannot directly relate these gene regulatory changes to mating success, our results suggest that individual variation in response to thermal challenges could impact sexually selected traits in a warming world.
Collapse
Affiliation(s)
- Sara E Lipshutz
- Department of Biology, Indiana University, Bloomington, IN, USA.,Department of Biology, Loyola University Chicago, Chicago, IL, USA
| | - Clara R Howell
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, USA.,Department of Biology, Duke University, Durham, NC, USA
| | - Aaron M Buechlein
- Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA
| | - Douglas B Rusch
- Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA
| | | | - Elizabeth P Derryberry
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, USA
| |
Collapse
|
30
|
Chan SKN, Suresh S, Munday P, Ravasi T, Bernal MA, Schunter C. The alternative splicing landscape of a coral reef fish during a marine heatwave. Ecol Evol 2022; 12:e8738. [PMID: 35342554 PMCID: PMC8933327 DOI: 10.1002/ece3.8738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 02/23/2022] [Accepted: 02/25/2022] [Indexed: 11/09/2022] Open
Abstract
Alternative splicing is a molecular mechanism that enables a single gene to encode multiple transcripts and proteins by post-transcriptional modification of pre-RNA molecules. Changes in the splicing scheme of genes can lead to modifications of the transcriptome and the proteome. This mechanism can enable organisms to respond to environmental fluctuations. In this study, we investigated patterns of alternative splicing in the liver of the coral reef fish Acanthochromis polyacanthus in response to the 2016 marine heatwave on the Great Barrier Reef. The differentially spliced (DS; n = 40) genes during the onset of the heatwave (i.e., 29.49°C or +1°C from average) were related to essential cellular functions such as the MAPK signaling system, Ca(2+) binding, and homeostasis. With the persistence of the heatwave for a period of one month (February to March), 21 DS genes were detected, suggesting that acute warming during the onset of the heatwave is more influential on alternative splicing than the continued exposure to elevated temperatures. After the heatwave, the water temperature cooled to ~24.96°C, and fish showed differential splicing of genes related to cyto-protection and post-damage recovery (n = 26). Two-thirds of the DS genes detected across the heatwave were also differentially expressed, revealing that the two molecular mechanisms act together in A. polyacanthus to cope with the acute thermal change. This study exemplifies how splicing patterns of a coral reef fish can be modified by marine heatwaves. Alternative splicing could therefore be a potential mechanism to adjust cellular physiological states under thermal stress and aid coral reef fishes in their response to more frequent acute thermal fluctuations in upcoming decades.
Collapse
Affiliation(s)
- Stanley Kin Nok Chan
- Swire Institute of Marine ScienceSchool of Biological SciencesThe University of Hong KongHong Kong SARChina
| | - Sneha Suresh
- Swire Institute of Marine ScienceSchool of Biological SciencesThe University of Hong KongHong Kong SARChina
| | - Phillip Munday
- Australian Research Council Centre of Excellence for Coral Reef StudiesJames Cook UniversityTownsvilleQueenslandAustralia
| | - Timothy Ravasi
- Australian Research Council Centre of Excellence for Coral Reef StudiesJames Cook UniversityTownsvilleQueenslandAustralia
- Marine Climate Change UnitOkinawa Institute of Science and Technology Graduate UniversityOnna‐sonJapan
| | - Moisés A. Bernal
- Department of Biological SciencesCollege of Science and MathematicsAuburn UniversityAuburnAlabamaUSA
| | - Celia Schunter
- Swire Institute of Marine ScienceSchool of Biological SciencesThe University of Hong KongHong Kong SARChina
| |
Collapse
|
31
|
Knobloch J, Müller C, Hildebrandt JP. Expression levels and activities of energy-yielding ATPases in the oligohaline neritid snail Theodoxus fluviatilis under changing environmental salinities. Biol Open 2022; 11:274356. [PMID: 35147181 PMCID: PMC8844442 DOI: 10.1242/bio.059190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 12/16/2021] [Indexed: 11/20/2022] Open
Abstract
The aquatic gastropod Theodoxus fluviatilis occurs in Europe and adjacent areas of Asia. The snail species has formed two genetically closely related subgroups, the freshwater ecotype (FW) and the brackish water ecotype (BW). Other than individuals of the FW ecotype, those of the BW ecotype survive in salinities of up to 28‰. Coastal aquatic ecosystems may be affected by climate change due to salinization. Thus, we investigated how the two Theodoxus ecotypes adjust to changes in environmental salinity, focusing on the question whether Na+/K+-ATPase or V-ATPase are regulated on the transcriptional, the translational or at the activity level under changing external salinities. Animals were gradually adjusted to extreme salinities in containers under long-day conditions and constant temperature. Whole body RNA- or protein extracts were prepared. Semi-quantitative PCR- and western blot-analyses did not reveal major changes in transcript or protein abundances for the two transporters under low or high salinity conditions. No significant changes in ATPase activities in whole body extracts of animals adjusted to high or low salinity conditions were detected. We conclude that constitutive expression of ATPases is sufficient to support osmotic and ion regulation in this species under changing salinities given the high level of tolerance with respect to changes in body fluid volume.
Collapse
Affiliation(s)
- Jan Knobloch
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D-17489 Greifswald, Germany
| | - Christian Müller
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D-17489 Greifswald, Germany
| | - Jan-Peter Hildebrandt
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D-17489 Greifswald, Germany
| |
Collapse
|
32
|
Schwieterman GD, Hardison EA, Eliason EJ. Effect of thermal variation on the cardiac thermal limits of a eurythermal marine teleost (Girella nigricans). Curr Res Physiol 2022; 5:109-117. [PMID: 35243360 PMCID: PMC8857604 DOI: 10.1016/j.crphys.2022.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 01/05/2022] [Accepted: 02/04/2022] [Indexed: 11/24/2022] Open
Abstract
Although most animals live in complex, thermally variable environments, the impact of this variability on specific physiological systems is still unresolved. The ectotherm heart is known to change in both structure and function to ensure appropriate oxygen delivery under different thermal regimes, but the plasticity of the upper thermal limits of the heart under stable or variable thermal acclimation conditions remains unknown. To investigate the role of thermal variability on cardiac acclimation potential, we acclimated a eurythermal fish, opaleye (Girella nigricans), to three static temperature treatments (13, 16, and 19 °C) as well as two oscillating treatments which cycled between maximum and minimum temperatures every 12 h (13–19 °C and 16–22 °C). These temperatures and daily thermal ranges were chosen to mimic the conditions observed in the rocky intertidal environments in Santa Barbara, CA, USA where the fish were collected. We hypothesized that increasing temperature would increase upper thermal limits of the heart, and that variable acclimations would result in broader acute thermal performance curves (TPCs) compared to static acclimations. We measured maximum heart rate during acute warming to determine cardiac thermal performance (i.e., the temperature corresponding to the onset of cardiac arrythmia, the temperature at maximum heart rate, absolute maximum heart rate, and the Arrhenius breakpoint temperature) and construct acute TPCs. Rising static acclimation temperatures increased upper thermal limits but had no impact on peak maximum heart rate. The warmest static temperature did, however, cause a narrowing of the acute TPC. Fish acclimated to variable conditions had the same upper thermal limits compared to fish acclimated to static conditions with the same mean temperature in all metrics of thermal performance. Further, there was no significant broadening of the acute TPC. This study suggests that cardiac plasticity is robust to thermal variation in this eurythermal fish. Rising static acclimation temperatures increased cardiac upper thermal limits. Warm acclimation caused the acute thermal performance curve to narrow. Acclimation to static and variable thermocycles did not impact upper thermal limits. Variable acclimation conditions did not broaden the acute thermal performance curve. Cardiac plasticity is robust to thermal variation in some eurythermal fishes.
Collapse
|
33
|
Manzon LA, Zak MA, Agee M, Boreham DR, Wilson JY, Somers CM, Manzon RG. Thermal acclimation alters both basal heat shock protein gene expression and the heat shock response in juvenile lake whitefish (Coregonus clupeaformis). J Therm Biol 2022; 104:103185. [DOI: 10.1016/j.jtherbio.2021.103185] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 12/21/2021] [Accepted: 12/31/2021] [Indexed: 12/26/2022]
|
34
|
Feugere L, Scott VF, Rodriguez-Barucg Q, Beltran-Alvarez P, Wollenberg Valero KC. Thermal stress induces a positive phenotypic and molecular feedback loop in zebrafish embryos. J Therm Biol 2021; 102:103114. [PMID: 34863478 DOI: 10.1016/j.jtherbio.2021.103114] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/28/2021] [Accepted: 10/20/2021] [Indexed: 12/17/2022]
Abstract
Aquatic organisms must cope with both rising and rapidly changing temperatures. These thermal changes can affect numerous traits, from molecular to ecological scales. Biotic stressors are already known to induce the release of chemical cues which trigger behavioural responses in other individuals. In this study, we infer whether fluctuating temperature, as an abiotic stressor, may similarly induce stress-like responses in individuals not directly exposed to the stressor. To test this hypothesis, zebrafish (Danio rerio) embryos were exposed for 24 h to fluctuating thermal stress, to medium in which another embryo was thermally stressed before ("stress medium"), and to a combination of these. Growth, behaviour, expression of molecular markers, and of whole-embryo cortisol were used to characterise the thermal stress response and its propagation between embryos. Both fluctuating high temperature and stress medium significantly accelerated development, by shifting stressed embryos from segmentation to pharyngula stages, and altered embryonic activity. Importantly, we found that the expression of sulfide:quinone oxidoreductase (SQOR), the antioxidant gene SOD1, and of interleukin-1β (IL-1β) were significantly altered by stress medium. This study illustrates the existence of positive thermal stress feedback loops in zebrafish embryos where heat stress can induce stress-like responses in conspecifics, but which might operate via different molecular pathways. If similar effects also occur under less severe heat stress regimes, this mechanism may be relevant in natural settings as well.
Collapse
Affiliation(s)
- Lauric Feugere
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom
| | - Victoria F Scott
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom; Energy and Environment Institute, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom
| | - Quentin Rodriguez-Barucg
- Department of Biomedical Sciences, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom
| | - Pedro Beltran-Alvarez
- Department of Biomedical Sciences, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom
| | - Katharina C Wollenberg Valero
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Kingston Upon Hull, HU6 7RX, United Kingdom.
| |
Collapse
|
35
|
Wollenberg Valero KC, Garcia-Porta J, Irisarri I, Feugere L, Bates A, Kirchhof S, Jovanović Glavaš O, Pafilis P, Samuel SF, Müller J, Vences M, Turner AP, Beltran-Alvarez P, Storey KB. Functional genomics of abiotic environmental adaptation in lacertid lizards and other vertebrates. J Anim Ecol 2021; 91:1163-1179. [PMID: 34695234 DOI: 10.1111/1365-2656.13617] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 09/27/2021] [Indexed: 11/27/2022]
Abstract
Understanding the genomic basis of adaptation to different abiotic environments is important in the context of climate change and resulting short-term environmental fluctuations. Using functional and comparative genomics approaches, we here investigated whether signatures of genomic adaptation to a set of environmental parameters are concentrated in specific subsets of genes and functions in lacertid lizards and other vertebrates. We first identify 200 genes with signatures of positive diversifying selection from transcriptomes of 24 species of lacertid lizards and demonstrate their involvement in physiological and morphological adaptations to climate. To understand how functionally similar these genes are to previously predicted candidate functions for climate adaptation and to compare them with other vertebrate species, we then performed a meta-analysis of 1,100 genes under selection obtained from -omics studies in vertebrate species adapted to different abiotic factors. We found that the vertebrate gene set formed a tightly connected interactome, which was to 23% enriched in previously predicted functions of adaptation to climate, and to a large part (18%) involved in organismal stress response. We found a much higher degree of identical genes being repeatedly selected among different animal groups (43.6%), and of functional similarity and post-translational modifications than expected by chance, and no clear functional division between genes used for ectotherm and endotherm physiological strategies. In total, 171 out of 200 genes of Lacertidae were part of this network. These results highlight an important role of a comparatively small set of genes and their functions in environmental adaptation and narrow the set of candidate pathways and markers to be used in future research on adaptation and stress response related to climate change.
Collapse
Affiliation(s)
| | - Joan Garcia-Porta
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | - Iker Irisarri
- Department of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Göttingen, Göttingen, Germany.,Campus Institut Data Science (CIDAS), Göttingen, Germany
| | - Lauric Feugere
- Department of Biological and Marine Sciences, University of Hull, Kingston-Upon-Hull, UK
| | - Adam Bates
- Department of Biological and Marine Sciences, University of Hull, Kingston-Upon-Hull, UK
| | - Sebastian Kirchhof
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany.,New York University Abu Dhabi, Abu Dhabi, United Arab Emirates
| | | | - Panayiotis Pafilis
- Section of Zoology and Marine Biology, Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
| | - Sabrina F Samuel
- Department of Biomedical Sciences, University of Hull, Kingston-Upon-Hull, UK
| | - Johannes Müller
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Miguel Vences
- Zoological Institute, Braunschweig University of Technology, Braunschweig, Germany
| | - Alexander P Turner
- Department of Computer Science, University of Nottingham, Nottingham, UK
| | | | | |
Collapse
|
36
|
Andersen Ø, Johnsen H, Wittmann AC, Harms L, Thesslund T, Berg RS, Siikavuopio S, Mykles DL. De novo transcriptome assemblies of red king crab (Paralithodes camtschaticus) and snow crab (Chionoecetes opilio) molting gland and eyestalk ganglia - Temperature effects on expression of molting and growth regulatory genes in adult red king crab. Comp Biochem Physiol B Biochem Mol Biol 2021; 257:110678. [PMID: 34655763 DOI: 10.1016/j.cbpb.2021.110678] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 09/16/2021] [Accepted: 10/08/2021] [Indexed: 12/12/2022]
Abstract
Red king crab (Paralithodes camtschaticus) and snow crab (Chionoecetes opilio) are deep-sea crustaceans widely distributed in the North Pacific and Northwest Atlantic Oceans. These giant predators have invaded the Barents Sea over the past decades, and climate-driven temperature changes may influence their distribution and abundance in the sub-Arctic region. Molting and growth in crustaceans are strongly affected by temperature, but the underlying molecular mechanisms are little known, particularly in cold-water species. Here, we describe multiple regulatory factors in the two high-latitude crabs by developing de novo transcriptomes from the molting gland (Y-organ or YO) and eye stalk ganglia (ESG), in addition to the hepatopancreas and claw muscle of red king crab. The Halloween genes encoding the ecdysteroidogenic enzymes were expressed in YO, and the ESG contained multiple neuropeptides, including molt-inhibiting hormone (MIH), crustacean hyperglycemic hormone (CHH), and ion-transport peptide (ITP). Both crabs expressed a diversity of growth-related factors, such as mTOR, AKT, Rheb and AMPKα, and stress-responsive factors, including multiple heat shock proteins (HSPs). Temperature effects on the expression of key regulatory genes were quantified by qPCR in adult red king crab males kept at 4 °C or 10 °C for two weeks during intermolt. The Halloween genes tended to be upregulated in YO at high temperature, while the ecdysteroid receptor and several growth regulators showed tissue-specific responses to elevated temperature. Constitutive and heat-inducible HSPs were expressed in an inverse temperature-dependent manner, suggesting that adult red king crabs can acclimate to increased water temperatures.
Collapse
Affiliation(s)
- Øivind Andersen
- Nofima, Tromsø NO-9291, Norway; Department of Animal and Aquacultural Sciences (IHA), Faculty of Life Sciences (BIOVIT), Norwegian University of Life Sciences (NMBU), PO Box 5003, 1433 Ås, Norway.
| | - Hanne Johnsen
- Nofima, Tromsø NO-9291, Norway; Norwegian Polar Institute, 9296 Tromsø, Norway
| | - Astrid C Wittmann
- MARUM - Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany; Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | - Lars Harms
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 27570 Bremerhaven, Germany
| | | | | | | | - Donald L Mykles
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA; Bodega Marine Laboratory, University of California, Davis, Bodega Bay, CA 94923, USA
| |
Collapse
|
37
|
Cascarano MC, Stavrakidis-Zachou O, Mladineo I, Thompson KD, Papandroulakis N, Katharios P. Mediterranean Aquaculture in a Changing Climate: Temperature Effects on Pathogens and Diseases of Three Farmed Fish Species. Pathogens 2021; 10:1205. [PMID: 34578236 PMCID: PMC8466566 DOI: 10.3390/pathogens10091205] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 09/03/2021] [Accepted: 09/13/2021] [Indexed: 02/07/2023] Open
Abstract
Climate change is expected to have a drastic effect on aquaculture worldwide. As we move forward with the agenda to increase and diversify aquaculture production, rising temperatures will have a progressively relevant impact on fish farming, linked to a multitude of issues associated with fish welfare. Temperature affects the physiology of both fish and pathogens, and has the potential to lead to significant increases in disease outbreaks within aquaculture systems, resulting in severe financial impacts. Significant shifts in future temperature regimes are projected for the Mediterranean Sea. We therefore aim to review and discuss the existing knowledge relating to disease outbreaks in the context of climate change in Mediterranean finfish aquaculture. The objective is to describe the effects of temperature on the physiology of both fish and pathogens, and moreover to list and discuss the principal diseases of the three main fish species farmed in the Mediterranean, namely gilthead seabream (Sparus aurata), European seabass (Dicentrarchus labrax), and meagre (Argyrosomus regius). We will attempt to link the pathology of each disease to a specific temperature range, while discussing potential future disease threats associated with the available climate change trends for the Mediterranean Sea.
Collapse
Affiliation(s)
- Maria Chiara Cascarano
- Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, 71500 Heraklion, Greece; (M.C.C.); (O.S.-Z.); (N.P.)
- Department of Biology, University of Crete, 71003 Heraklion, Greece
| | - Orestis Stavrakidis-Zachou
- Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, 71500 Heraklion, Greece; (M.C.C.); (O.S.-Z.); (N.P.)
- Department of Biology, University of Crete, 71003 Heraklion, Greece
| | - Ivona Mladineo
- Biology Center of Czech Academy of Sciences, Laboratory of Functional Helminthology, Institute of Parasitology, 370 05 Ceske Budejovice, Czech Republic;
| | - Kim D. Thompson
- Vaccines and Diagnostics, Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, Midlothian EH26 0PZ, UK;
| | - Nikos Papandroulakis
- Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, 71500 Heraklion, Greece; (M.C.C.); (O.S.-Z.); (N.P.)
| | - Pantelis Katharios
- Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, 71500 Heraklion, Greece; (M.C.C.); (O.S.-Z.); (N.P.)
| |
Collapse
|
38
|
Effects of recent thermal history on thermal behaviour, thermal tolerance and oxygen uptake of Yellowtail Kingfish (Seriola lalandi) juveniles. J Therm Biol 2021; 99:103023. [PMID: 34420646 DOI: 10.1016/j.jtherbio.2021.103023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/13/2021] [Accepted: 05/30/2021] [Indexed: 11/23/2022]
Abstract
This study determined the physiological and metabolic responses of cultivated Yellowtail Kingfish (Seriola lalandi) juveniles in accordance with their recent thermal history. The fish were acclimated at 20, 23, 26, 29 and 32 °C for 21 days to determine the final preferred temperature, thermal tolerance and the effect of acclimation temperatures on their oxygen uptake and aerobic scope. The final preferred temperature of juveniles was established at 26 °C. The critical thermal maximum (CTmax) ranged from 34.2 to 36.9 °C, while the critical thermal minimum (CTmin) ranged from 10.9 to 17.3 °C, depending on acclimation temperature. With the CTmax and CTmin values, the thermal window was determined to have an area of 258°C2, which is characteristic of subtropical organisms. Although, the metabolic rate was relatively constant (ranging 390.6-449.8 mg O2 kg-0.8 h-1) between 20 and 26 °C (Q10 = 1.6, 1.0), an increase to 544.8 mg O2 kg-0.8 h-1 at 29 °C (Q10 = 1.9) and decrease of 478.4 mg O2 kg-0.8 h-1 at 32 °C (Q10 = 0.6) were observed. The maximum value obtained for aerobic scope was 310.9 mg O2 kg-0.8 h-1 at 26 °C. These results suggest that the acclimation temperature of 26 °C is an optimum thermal condition for a physiological and metabolic performance of yellowtail kingfish juveniles. On the contrary, the response observed during the evaluation of critical temperatures, oxygen uptake and aerobic scope indicated that yellowtail kingfish in the juvenile state could be vulnerable when it experiences for long periods (e.g., >21 days) temperatures above 29 °C. According to our results, the thermoregulatory behaviour of yellowtail kingfish in the juvenile stages could be one of the most important mechanisms to maintain its optimal physiological performance by actively selecting a stable thermal environment close to 26 °C. In addition, it was determined the limits of the pejus state of juvenile yellowtail kingfish at 29 °C, where an increase of oxygen uptake to maintain the aerobic energy metabolism was observed, this could certainly affect the growth of juveniles in culture systems if they do not return in a thermal range of 23-26 °C. These results can contribute to infer the different effects of acclimation temperature on the growth, thermal tolerance and respiratory capacity of S. lalandi juveniles on aquaculture systems.
Collapse
|
39
|
Perez R, de Souza Araujo N, Defrance M, Aron S. Molecular adaptations to heat stress in the thermophilic ant genus Cataglyphis. Mol Ecol 2021; 30:5503-5516. [PMID: 34415643 DOI: 10.1111/mec.16134] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Revised: 08/13/2021] [Accepted: 08/16/2021] [Indexed: 12/13/2022]
Abstract
Over the last decade, increasing attention has been paid to the molecular adaptations used by organisms to cope with thermal stress. However, to date, few studies have focused on thermophilic species living in hot, arid climates. In this study, we explored molecular adaptations to heat stress in the thermophilic ant genus Cataglyphis, one of the world's most thermotolerant animal taxa. We compared heat tolerance and gene expression patterns across six Cataglyphis species from distinct phylogenetic groups that live in different habitats and experience different thermal regimes. We found that all six species had high heat tolerance levels with critical thermal maxima (CTmax ) ranging from 43℃ to 45℃ and a median lethal temperature (LT50) ranging from 44.5℃ to 46.8℃. Transcriptome analyses revealed that, although the number of differentially expressed genes varied widely for the six species (from 54 to 1118), many were also shared. Functional annotation of the differentially expressed and co-expressed genes showed that the biological pathways involved in heat-shock responses were similar among species and were associated with four major processes: the regulation of transcriptional machinery and DNA metabolism; the preservation of proteome stability; the elimination of toxic residues; and the maintenance of cellular integrity. Overall, our results suggest that molecular responses to heat stress have been evolutionarily conserved in the ant genus Cataglyphis and that their diversity may help workers withstand temperatures close to their physiological limits.
Collapse
Affiliation(s)
- Rémy Perez
- Department of Evolutionary Biology & Ecology, Université Libre de Bruxelles, Brussels, Belgium
| | - Natalia de Souza Araujo
- Department of Evolutionary Biology & Ecology, Université Libre de Bruxelles, Brussels, Belgium.,Interuniversity Institute of Bioinformatics in Brussels, Université Libre de Bruxelles, Brussels, Belgium
| | - Matthieu Defrance
- Interuniversity Institute of Bioinformatics in Brussels, Université Libre de Bruxelles, Brussels, Belgium
| | - Serge Aron
- Department of Evolutionary Biology & Ecology, Université Libre de Bruxelles, Brussels, Belgium
| |
Collapse
|
40
|
Beemelmanns A, Zanuzzo FS, Sandrelli RM, Rise ML, Gamperl AK. The Atlantic salmon's stress- and immune-related transcriptional responses to moderate hypoxia, an incremental temperature increase, and these challenges combined. G3 (BETHESDA, MD.) 2021; 11:jkab102. [PMID: 34015123 PMCID: PMC8613830 DOI: 10.1093/g3journal/jkab102] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/29/2021] [Indexed: 12/13/2022]
Abstract
The marine environment is predicted to become warmer, and more hypoxic, and these conditions may negatively impact the health and survival of coastal fish species, including wild and farmed Atlantic salmon (Salmo salar). Thus, we examined how: (1) moderate hypoxia (∼70% air saturation) at 12°C for 3 weeks; (2) an incremental temperature increase from 12°C to 20°C (at 1°C week-1) followed by 4 weeks at 20°C; and (3) treatment "2" combined with moderate hypoxia affected transcript expression in the liver of post-smolts as compared to control conditions (normoxia, 12°C). Specifically, we assessed the expression of 45 genes related to the heat shock response, oxidative stress, apoptosis, metabolism and immunity using a high-throughput qPCR approach (Fluidigm Biomark™ HD). The expression profiles of 27 "stress"-related genes indicated that: (i) moderate hypoxia affected the expression of several stress genes at 12°C; (ii) their expression was impacted by 16°C under normoxic conditions, and this effect increased until 20°C; (iii) the effects of moderate hypoxia were not additive to those at temperatures above 16°C; and (iv) long-term (4 weeks) exposure to 20°C, with or without hypoxia, resulted in a limited acclimatory response. In contrast, the expression of 15 immune-related genes was not greatly affected until temperatures reached 20°C, and this effect was particularly evident in fish exposed to the added challenge of hypoxia. These results provide valuable information on how these two important environmental factors affect the "stress" physiology and immunology of Atlantic salmon, and we identify genes that may be useful as hypoxia and/or temperature biomarkers in salmonids and other fishes.
Collapse
Affiliation(s)
- Anne Beemelmanns
- Department of Ocean Sciences, Memorial University,
St. John’s, NL A1C 5S7, Canada
| | - Fábio S Zanuzzo
- Department of Ocean Sciences, Memorial University,
St. John’s, NL A1C 5S7, Canada
| | - Rebeccah M Sandrelli
- Department of Ocean Sciences, Memorial University,
St. John’s, NL A1C 5S7, Canada
| | - Matthew L Rise
- Department of Ocean Sciences, Memorial University,
St. John’s, NL A1C 5S7, Canada
| | - A Kurt Gamperl
- Department of Ocean Sciences, Memorial University,
St. John’s, NL A1C 5S7, Canada
| |
Collapse
|
41
|
Foodomics technology: promising analytical methods of functional activities of plant polyphenols. Eur Food Res Technol 2021. [DOI: 10.1007/s00217-021-03781-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
|
42
|
Li F, Long Y, Xie J, Ren J, Zhou T, Song G, Li Q, Cui Z. Generation of GCaMP6s-Expressing Zebrafish to Monitor Spatiotemporal Dynamics of Calcium Signaling Elicited by Heat Stress. Int J Mol Sci 2021; 22:ijms22115551. [PMID: 34074030 PMCID: PMC8197303 DOI: 10.3390/ijms22115551] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 05/20/2021] [Accepted: 05/21/2021] [Indexed: 01/09/2023] Open
Abstract
The ability of organisms to quickly sense and transduce signals of environmental stresses is critical for their survival. Ca2+ is a versatile intracellular messenger involved in sensing a wide variety of stresses and regulating the subsequent cellular responses. So far, our understanding for calcium signaling was mostly obtained from ex vivo tissues and cultured cell lines, and the in vivo spatiotemporal dynamics of stress-triggered calcium signaling in a vertebrate remains to be characterized. Here, we describe the generation and characterization of a transgenic zebrafish line with ubiquitous expression of GCaMP6s, a genetically encoded calcium indicator (GECI). We developed a method to investigate the spatiotemporal patterns of Ca2+ events induced by heat stress. Exposure to heat stress elicited immediate and transient calcium signaling in developing zebrafish. Cells extensively distributed in the integument of the head and body trunk were the first batch of responders and different cell populations demonstrated distinct response patterns upon heat stress. Activity of the heat stress-induced calcium signaling peaked at 30 s and swiftly decreased to near the basal level at 120 s after the beginning of exposure. Inhibition of the heat-induced calcium signaling by LaCl3 and capsazepine and treatment with the inhibitors for CaMKII (Ca²2/calmodulin-dependent protein kinase II) and HSF1 (Heat shock factor 1) all significantly depressed the enhanced heat shock response (HSR). Together, we delineated the spatiotemporal dynamics of heat-induced calcium signaling and confirmed functions of the Ca2+-CaMKII-HSF1 pathway in regulating the HSR in zebrafish.
Collapse
Affiliation(s)
- Fengyang Li
- College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China;
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
| | - Yong Long
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
- Correspondence: , (Y.L.); (Z.C.); Tel.: +86-27-68780100 (Y.L.); +86-27-68780090 (Z.C.)
| | - Juhong Xie
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jing Ren
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China;
| | - Tong Zhou
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guili Song
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
| | - Qing Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; (J.X.); (T.Z.); (G.S.); (Q.L.)
| | - Zongbin Cui
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China;
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China
- Correspondence: , (Y.L.); (Z.C.); Tel.: +86-27-68780100 (Y.L.); +86-27-68780090 (Z.C.)
| |
Collapse
|
43
|
Xuan B, Park J, Choi S, You I, Nam BH, Noh ES, Kim EM, Song MY, Shin Y, Jeon JH, Kim EB. Draft Genome of the Korean smelt Hypomesus nipponensis and its transcriptomic responses to heat stress in the liver and muscle. G3-GENES GENOMES GENETICS 2021; 11:6263857. [PMID: 33944944 PMCID: PMC8496316 DOI: 10.1093/g3journal/jkab147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 04/23/2021] [Indexed: 12/13/2022]
Abstract
Pond smelt (Hypomesus nipponensis) is a cold-freshwater fish species and a winter economic aquaculture resource in South Korea. Because of its high susceptibility to abnormal water temperature from global warming, a large number of smelt die in hot summers. Here, we present the first draft genome of H. nipponensis and transcriptomic changes in molecular mechanisms or intracellular responses under heat stress. We combined Illumina and PacBio sequencing technologies to generate the draft genome of H. nipponensis. Based on the reference genome, we conducted transcriptome analysis of liver and muscle tissues under normal (NT, 5°C) vs. warm (HT, 23°C) conditions to identify heat stress–induced genes and gene categories. We observed a total of 1987 contigs with N50 of 0.46 Mbp, with the largest contig (3.03 Mbp) in the assembled genome. A total of 20,644 protein-coding genes were predicted, and 19,224 genes were functionally annotated: 15,955 genes for Gene Ontology terms and 11,560 genes for KEGG Orthology. We conducted the lost and gained genes analysis compared with three species that: human, zebrafish, and salmon. In the lost genes analysis, we detected that smelt lost 4461 (22.16%), 2825 (10.62%), and 1499 (3.09%) genes compare with above three species, respectively. In the gained genes analysis, we observed that smelt gained 1133 (5.49%), 1670 (8.09%), and 229 (1.11%) genes compared with the above species, respectively. From transcriptome analysis, a total of 297 and 331 differentially expressed genes (DEGs) with a false discovery rate <0.05 were identified in the liver and muscle tissues, respectively. Gene enrichment analysis of DEGs indicates that upregulated genes were significantly enriched for lipid biosynthetic process (GO:0008610, P < 0.001) and regulation of apoptotic process (GO:0042981, P < 0.01), and genes were downregulated by immune responses such as myeloid cell differentiation (GO:0030099, P < 0.001) in the liver under heat stress. In muscle tissue, upregulated genes were enriched for hypoxia (GO:0001666, P < 0.05), transcription regulator activity (GO:0140110, P < 0.001), and calcium-release channel activity (GO:0015278, P < 0.01), and genes were downregulated for a nicotinamide nucleotide biosynthetic process (GO:0019359, P < 0.01). The results of KEGG pathway analysis were similar to that of gene enrichment analysis. The draft genome and transcriptomic of H. nipponensis will be a useful genetic resource for functional and evolutionary studies. Our findings will improve understanding of molecular mechanisms and heat responses and be useful for predicting survival of the smelt and its closely related species under global warming.
Collapse
Affiliation(s)
- Biao Xuan
- Department of Applied Animal Science, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea.,Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea
| | - Jongbin Park
- Department of Applied Animal Science, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea.,Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea
| | - Sukjung Choi
- Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea
| | - Inhwan You
- Department of Applied Animal Science, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea.,Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea
| | - Bo-Hye Nam
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, Korea
| | - Eun Soo Noh
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, Korea
| | - Eun Mi Kim
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, Korea
| | - Mi-Young Song
- Inland Fisheries Research Institute, National Institute of Fisheries Science, Gapyeong 12453, Korea
| | - Younhee Shin
- Research and Development Center, Insilicogen Inc, Yongin 16954, Republic of Korea
| | - Ji-Hyeon Jeon
- Research and Development Center, Insilicogen Inc, Yongin 16954, Republic of Korea.,Department of Biological Science, Sungkyunkwan University, Suwon 16419, Korea
| | - Eun Bae Kim
- Department of Applied Animal Science, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea.,Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon National University, Chuncheon 24341, Kangwon-do, Republic of Korea
| |
Collapse
|
44
|
Liu Y, Muniz MMM, Lam S, Song D, Zhang Y, Yin J, Cánovas A, Liu H. Gene expression profile of the taimen Hucho taimen in response to acute temperature changes. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2021; 38:100824. [PMID: 33743513 DOI: 10.1016/j.cbd.2021.100824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 03/04/2021] [Accepted: 03/04/2021] [Indexed: 10/21/2022]
Abstract
The endangered cold-water fish species taimen (Hucho taimen) suffer acute temperature changes in culture and wild conditions. Understanding the effects of acute temperature changes on physiological processes of this species is essential for aquaculture practices and conservation. Liver transcriptomic profiles of the taimen (n = 24) exposed to acute temperature decrease (from 20 °C to 10 °C) and acute temperature increase (from 10 °C to 20 °C) was evaluated using high-throughput RNA-Sequencing. Samples were collected at day 0, 1, 7 and 35 in both treatments. Compared to day 0, the total numbers of differentially expressed genes (DEGs) in the taimen after acute temperature decrease were 173, 226 and 42 at day 1, 7 and 35, respectively, and the total numbers of DEGs following acute temperature increase were 260, 253 and 282 at day 1, 7 and 35, respectively. Particularly, 14 key regulatory genes were commonly found between both acute temperature treatments. Functional analysis based on the commonly identified DEGs revealed important metabolic pathways related to metabolism and immune function, suggesting a specific response mechanism of taimen against cold and heat shock. The results may assist in developing management strategies for stress mediation caused by acute temperature changes in the taimen and other cold water fish.
Collapse
Affiliation(s)
- Yang Liu
- Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin 150070, China; Key Laboratory of Aquatic Animal Diseases and Immune Technology of Heilongjiang Province, Harbin 150070, China
| | - Maria Malane Magalhães Muniz
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph N1G2W1, Canada
| | - Stephanie Lam
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph N1G2W1, Canada
| | - Dan Song
- Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin 150070, China
| | - Yongquan Zhang
- Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin 150070, China
| | - Jiasheng Yin
- Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin 150070, China
| | - Angela Cánovas
- Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph N1G2W1, Canada.
| | - Hongbai Liu
- Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin 150070, China; Key Laboratory of Aquatic Animal Diseases and Immune Technology of Heilongjiang Province, Harbin 150070, China.
| |
Collapse
|
45
|
Schoville SD, Simon S, Bai M, Beethem Z, Dudko RY, Eberhard MJB, Frandsen PB, Küpper SC, Machida R, Verheij M, Willadsen PC, Zhou X, Wipfler B. Comparative transcriptomics of ice-crawlers demonstrates cold specialization constrains niche evolution in a relict lineage. Evol Appl 2021; 14:360-382. [PMID: 33664782 PMCID: PMC7896716 DOI: 10.1111/eva.13120] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 07/25/2020] [Accepted: 08/17/2020] [Indexed: 12/26/2022] Open
Abstract
Key changes in ecological niche space are often critical to understanding how lineages diversify during adaptive radiations. However, the converse, or understanding why some lineages are depauperate and relictual, is more challenging, as many factors may constrain niche evolution. In the case of the insect order Grylloblattodea, highly conserved thermal breadth is assumed to be closely tied to their relictual status, but has not been formerly tested. Here, we investigate whether evolutionary constraints in the physiological tolerance of temperature can help explain relictualism in this lineage. Using a comparative transcriptomics approach, we investigate gene expression following acute heat and cold stress across members of Grylloblattodea and their sister group, Mantophasmatodea. We additionally examine patterns of protein evolution, to identify candidate genes of positive selection. We demonstrate that cold specialization in Grylloblattodea has been accompanied by the loss of the inducible heat shock response under both acute heat and cold stress. Additionally, there is widespread evidence of selection on protein-coding genes consistent with evolutionary constraints due to cold specialization. This includes positive selection on genes involved in trehalose transport, metabolic function, mitochondrial function, oxygen reduction, oxidative stress, and protein synthesis. These patterns of molecular adaptation suggest that Grylloblattodea have undergone evolutionary trade-offs to survive in cold habitats and should be considered highly vulnerable to climate change. Finally, our transcriptomic data provide a robust backbone phylogeny for generic relationships within Grylloblattodea and Mantophasmatodea. Major phylogenetic splits in each group relate to arid conditions driving biogeographical patterns, with support for a sister-group relationship between North American Grylloblatta and Altai-Sayan Grylloblattella, and a range disjunction in Namibia splitting major clades within Mantophasmatodea.
Collapse
Affiliation(s)
| | - Sabrina Simon
- Biosystematics GroupWageningen University & ResearchPB WageningenThe Netherlands
| | - Ming Bai
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
| | - Zachary Beethem
- Department of EntomologyUniversity of Wisconsin‐MadisonMadisonWIUSA
- Present address:
Department of Biomedical SciencesSchool of Veterinary MedicineUniversity of PennsylvaniaPhiladelphiaPAUSA
| | - Roman Y. Dudko
- Institute of Systematics and Ecology of AnimalsSiberian Branch of the Russian Academy of SciencesNovosibirskRussia
- Tomsk State UniversityTomskRussia
| | - Monika J. B. Eberhard
- Zoological Institute and MuseumGeneral Zoology and Zoological SystematicsUniversity of GreifswaldGreifswaldGermany
| | - Paul B. Frandsen
- Department of Plant & Wildlife SciencesBrigham Young UniversityProvoUTUSA
- Data Science LabOffice of the Chief Information OfficerSmithsonian InstitutionWashingtonDCU.S.A
| | - Simon C. Küpper
- Zoological Institute and MuseumGeneral Zoology and Zoological SystematicsUniversity of GreifswaldGreifswaldGermany
| | - Ryuichiro Machida
- Sugadaira Research StationMountain Science CenterUniversity of TsukubaUeda, NaganoJapan
| | - Max Verheij
- Biosystematics GroupWageningen University & ResearchPB WageningenThe Netherlands
| | - Peter C. Willadsen
- Department of EntomologyUniversity of Wisconsin‐MadisonMadisonWIUSA
- Present address:
Department of Entomology and Plant PathologyNorth Carolina State UniversityCampus Box 7613RaleighNCUSA
| | - Xin Zhou
- Department of EntomologyCollege of Plant ProtectionChina Agricultural UniversityBeijingChina
| | | |
Collapse
|
46
|
Song J, McDowell JR. Comparative transcriptomics of spotted seatrout ( Cynoscion nebulosus) populations to cold and heat stress. Ecol Evol 2021; 11:1352-1367. [PMID: 33598136 PMCID: PMC7863673 DOI: 10.1002/ece3.7138] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 11/20/2020] [Accepted: 11/23/2020] [Indexed: 12/25/2022] Open
Abstract
Resilience to climate change depends on a species' adaptive potential and phenotypic plasticity. The latter can enhance survival of individual organisms during short periods of extreme environmental perturbations, allowing genetic adaptation to take place over generations. Along the U.S. East Coast, estuarine-dependent spotted seatrout (Cynoscion nebulosus) populations span a steep temperature gradient that provides an ideal opportunity to explore the molecular basis of phenotypic plasticity. Genetically distinct spotted seatrout sampled from a northern and a southern population were exposed to acute cold and heat stress (5 biological replicates in each treatment and control group), and their transcriptomic responses were compared using RNA-sequencing (RNA-seq). The southern population showed a larger transcriptomic response to acute cold stress, whereas the northern population showed a larger transcriptomic response to acute heat stress compared with their respective population controls. Shared transcripts showing significant differences in expression levels were predominantly enriched in pathways that included metabolism, transcriptional regulation, and immune response. In response to heat stress, only the northern population significantly upregulated genes in the apoptosis pathway, which could suggest greater vulnerability to future heat waves in this population as compared to the southern population. Genes showing population-specific patterns of expression, including hpt, acot, hspa5, and hsc71, are candidates for future studies aiming to monitor intraspecific differences in temperature stress responses in spotted seatrout. Our findings contribute to the current understanding of phenotypic plasticity and provide a basis for predicting the response of a eurythermal fish species to future extreme temperatures.
Collapse
Affiliation(s)
- Jingwei Song
- Virginia Institute of Marine Science (VIMS)College of William and MaryGloucester PointVAUSA
| | - Jan R. McDowell
- Virginia Institute of Marine Science (VIMS)College of William and MaryGloucester PointVAUSA
| |
Collapse
|
47
|
Nonnis S, Angiulli E, Maffioli E, Frabetti F, Negri A, Cioni C, Alleva E, Romeo V, Tedeschi G, Toni M. Acute environmental temperature variation affects brain protein expression, anxiety and explorative behaviour in adult zebrafish. Sci Rep 2021; 11:2521. [PMID: 33510219 PMCID: PMC7843641 DOI: 10.1038/s41598-021-81804-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Accepted: 01/08/2021] [Indexed: 12/11/2022] Open
Abstract
This study investigated the effect of 4-d acute thermal treatments at 18 °C, 26 °C (control) and 34 °C on the nervous system of adult zebrafish (Danio rerio) using a multidisciplinary approach based on behavioural tests and brain proteomic analysis. The behavioural variations induced by thermal treatment were investigated using five different tests, the novel tank diving, light and dark preference, social preference, mirror biting, and Y-Maze tests, which are standard paradigms specifically tailored for zebrafish to assess their anxiety-like behaviour, boldness, social preference, aggressiveness, and explorative behaviour, respectively. Proteomic data revealed that several proteins involved in energy metabolism, messenger RNA translation, protein synthesis, folding and degradation, cytoskeleton organisation and synaptic vesiculation are regulated differently at extreme temperatures. The results showed that anxiety-like behaviours increase in zebrafish at 18 °C compared to those at 26 °C or 34 °C, whereas anxiety-related protein signalling pathways are downregulated. Moreover, treatments at both 18 °C and 34 °C affect the exploratory behaviour that appears not to be modulated by past experiences, suggesting the impairment of fish cognitive abilities. This study is the continuation of our previous work on the effect of 21-d chronic treatment at the same constant temperature level and will enable the comparison of acute and chronic treatment effects on the nervous system function in adult zebrafish.
Collapse
Affiliation(s)
- S Nonnis
- Department of Veterinary Medicine, Università degli Studi di Milano, Via dell'Università 6, 26900, Lodi, Italy.,CRC "Innovation for Well-Beeing and Environment" (I-WE), Università degli Studi di Milano, Milano, Italy
| | - E Angiulli
- Department of Biology and Biotechnology ''Charles Darwin", Sapienza University, Via Alfonso Borelli 50, 00161, Rome, Italy
| | - E Maffioli
- Department of Veterinary Medicine, Università degli Studi di Milano, Via dell'Università 6, 26900, Lodi, Italy. .,CIMAINA, Università degli Studi di Milano, Milano, Italy.
| | - F Frabetti
- Department of Experimental, Diagnostic and Specialty Medicine, University of Bologna, Bologna, Italy
| | - A Negri
- Department of Veterinary Medicine, Università degli Studi di Milano, Via dell'Università 6, 26900, Lodi, Italy.,CIMAINA, Università degli Studi di Milano, Milano, Italy
| | - C Cioni
- Department of Biology and Biotechnology ''Charles Darwin", Sapienza University, Via Alfonso Borelli 50, 00161, Rome, Italy
| | - E Alleva
- Center for Behavioural Sciences and Mental Health, IstitutoSuperiore di Sanità, Rome, Italy
| | - V Romeo
- Department of Veterinary Medicine, Università degli Studi di Milano, Via dell'Università 6, 26900, Lodi, Italy
| | - G Tedeschi
- Department of Veterinary Medicine, Università degli Studi di Milano, Via dell'Università 6, 26900, Lodi, Italy.,CRC "Innovation for Well-Beeing and Environment" (I-WE), Università degli Studi di Milano, Milano, Italy.,CIMAINA, Università degli Studi di Milano, Milano, Italy
| | - M Toni
- Department of Biology and Biotechnology ''Charles Darwin", Sapienza University, Via Alfonso Borelli 50, 00161, Rome, Italy.
| |
Collapse
|
48
|
Li P, Liu Q, Li J, Wang F, Wen S, Li N. Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2021; 38:100791. [PMID: 33465733 DOI: 10.1016/j.cbd.2021.100791] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 01/06/2021] [Accepted: 01/08/2021] [Indexed: 12/21/2022]
Abstract
Global warming significantly affects fish, particularly cold-water fish, because increased temperature adversely impacts their abilities to grow or reproduce, and eventually influences their fitness or even causes death. To survive, fish may alter their distribution or behavior to avoid the stress, and perhaps acclimate or evolve resistance to the elevated temperature. Brachymystax lenok tsinlingensis is an endangered cold-water species in China, and it has been found to alter the altitudinal distribution, decrease swimming efficiency and develop resistance under heat exposure, which badly impact the continuing conservation work. To better protect them, it is essential to understand how they respond to thermal stress behaviorally and physiologically. Therefore, the fish were exposed to 24.5 °C and based on the time taken for them to lose equilibrium, they were separately sampled as sensitive and tolerant groups. Both gill and liver tissues were collected from both groups for transcriptome sequencing. Sequencing results demonstrated that control and tolerant groups were similar in transcriptomic patterns and sensitive groups differentially expressed more genes than tolerant ones, suggesting the gene expression of tolerant groups may return to base levels as exposure time increased. Tissue differences were the major factor affecting gene expression, and they also displayed different physiological responses to heat stress. Consistent with other studies, heat shock response, immune response, metabolic adjustment and ion transport were found to be triggered after exposed to elevated temperature. The findings would contribute to a better understanding of responding mechanisms of fish to thermal stress and provide guidance for future conservation programs.
Collapse
Affiliation(s)
- Ping Li
- Center for Research on Environmental Ecology and Fish Nutrition of the Ministry of Agriculture and Rural Affairs, Shanghai Ocean University, Shanghai 201306, China; Key Laboratory of Freshwater Aquatic Genetic Resources of the Ministry of Agriculture and Rural Affairs, Shanghai Ocean University, Shanghai 201306, China; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China
| | - Qigen Liu
- Center for Research on Environmental Ecology and Fish Nutrition of the Ministry of Agriculture and Rural Affairs, Shanghai Ocean University, Shanghai 201306, China; Key Laboratory of Freshwater Aquatic Genetic Resources of the Ministry of Agriculture and Rural Affairs, Shanghai Ocean University, Shanghai 201306, China; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China
| | - Jiale Li
- Key Laboratory of Freshwater Aquatic Genetic Resources of the Ministry of Agriculture and Rural Affairs, Shanghai Ocean University, Shanghai 201306, China; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China
| | - Feng Wang
- Yellow River Fisheries Research Institute, Chinese Academy of Fishery Science, Xi'an 710086, China
| | - Sien Wen
- Yellow River Fisheries Research Institute, Chinese Academy of Fishery Science, Xi'an 710086, China
| | - Ning Li
- Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.
| |
Collapse
|
49
|
Cooper RD, Shaffer HB. Allele-specific expression and gene regulation help explain transgressive thermal tolerance in non-native hybrids of the endangered California tiger salamander (Ambystoma californiense). Mol Ecol 2021; 30:987-1004. [PMID: 33338297 DOI: 10.1111/mec.15779] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/30/2020] [Accepted: 12/11/2020] [Indexed: 01/26/2023]
Abstract
Hybridization between native and non-native species is an ongoing global conservation threat. Hybrids that exhibit traits and tolerances that surpass parental values are of particular concern, given their potential to outperform native species. Effective management of hybrid populations requires an understanding of both physiological performance and the underlying mechanisms that drive transgressive hybrid traits. Here, we explore several aspects of the hybridization between the endangered California tiger salamander (Ambystoma californiense; CTS) and the introduced barred tiger salamander (Ambystoma mavortium; BTS). We assayed critical thermal maximum (CTMax) to compare the ability of CTS, BTS and F1 hybrids to tolerate acute thermal stress, and found that hybrids exhibit a wide range of CTMax values, with 33% (4/12) able to tolerate temperatures greater than either parent. We then quantified the genomic response, measured at the RNA transcript level, of each salamander, to explore the mechanisms underlying thermal tolerance strategies. We found that CTS and BTS have strikingly different values and tissue-specific patterns of overall gene expression, with hybrids expressing intermediate values. F1 hybrids display abundant and variable degrees of allele-specific expression (ASE), likely arising from extensive compensatory evolution in gene regulatory mechanisms between CTS and BTS. We found evidence that the proportion of genes with allelic imbalance in individual hybrids correlates with their CTMax, suggesting a link between ASE and expanded thermal tolerance that may contribute to the success of hybrid salamanders in California. Future climate change may further complicate management of CTS if hybrid salamanders are better equipped to deal with rising temperatures.
Collapse
Affiliation(s)
- Robert D Cooper
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.,La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA, USA
| | - H Bradley Shaffer
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.,La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA, USA
| |
Collapse
|
50
|
Yang S, Zhao T, Ma A, Huang Z, Yang J, Yuan C, Guo X, Zhu C. Heat stress-induced HSP90 expression is dependent on ERK and HSF1 activation in turbot (Scophthalmus maximus) kidney cells. Cell Stress Chaperones 2021; 26:173-185. [PMID: 33025381 PMCID: PMC7736437 DOI: 10.1007/s12192-020-01166-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 09/15/2020] [Accepted: 09/16/2020] [Indexed: 01/01/2023] Open
Abstract
Mitogen-activated protein kinases (MAPKs) and heat shock proteins (HSPs) are ubiquitous proteins that are functional mediators in both normal and stressed states of the cell. In this study, we performed heat stress (37 °C) experiments on turbot kidney (TK) cells. Heat stress expression patterns of HSP90, as well as the expression and phosphorylation levels of extracellular-regulated signal kinases (ERKs) and the transcription factor HSF1 and c-Fos, were examined. The results show that heat stress activates ERK1/2 and HSF1, and induces HSP90 gene expression in TK cells. Inhibition of ERK activation attenuates heat stress-induced HSP90 gene expression. The double luciferase reporter gene experiment showed that HSF1 is an important transcription factor for heat-induced HSP90 gene expression. Likewise, c-Fos does not directly regulate the heat-induced expression of HSP90 in turbot kidney cells. To our knowledge, this is the first study to report a signaling pathway that regulates the heat shock response in turbot cells. Our results may facilitate an understanding of the underlying molecular mechanisms of the cellular stress response in marine fish.
Collapse
Affiliation(s)
- Shuangshuang Yang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
- Shandong Qilu Cell Therapy Engineering Technology Co., Ltd, Jinan, 250000, China
| | - Tingting Zhao
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China
| | - Aijun Ma
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China.
| | - Zhihui Huang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
| | - Jingkun Yang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
| | - Chenhao Yuan
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
| | - Xiaoli Guo
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China
| | - Chunyue Zhu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, No.106 Nanjing Road, Qingdao, 266071, China
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China
| |
Collapse
|