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Xiang LY, Chen XY, Lu LM, Kong MH, Ji Q, Xiong Y, Xie MM, Jian XL, Zhu ZR. Mechanisms of Neuronal Reactivation in Memory Consolidation: A Perspective from Pathological Conditions. Neuroscience 2024; 551:196-204. [PMID: 38810690 DOI: 10.1016/j.neuroscience.2024.05.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 05/19/2024] [Accepted: 05/23/2024] [Indexed: 05/31/2024]
Abstract
Memory consolidation refers to a process by which labile newly formed memory traces are progressively strengthened into long term memories and become more resistant to interference. Recent work has revealed that spontaneous hippocampal activity during rest, commonly referred to as "offline" activity, plays a critical role in the process of memory consolidation. Hippocampal reactivation occurs during sharp-wave ripples (SWRs), which are events associated with highly synchronous neural firing in the hippocampus and modulation of neural activity in distributed brain regions. Memory consolidation occurs primarily through a coordinated communication between hippocampus and neocortex. Cortical slow oscillations drive the repeated reactivation of hippocampal memory representations together with SWRs and thalamo-cortical spindles, inducing long-lasting cellular and network modifications responsible for memory stabilization.In this review, we aim to comprehensively cover the field of "reactivation and memory consolidation" research by detailing the physiological mechanisms of neuronal reactivation and firing patterns during SWRs and providing a discussion of more recent key findings. Several mechanistic explanations of neuropsychiatric diseases propose that impaired neural replay may underlie some of the symptoms of the disorders. Abnormalities in neuronal reactivation are a common phenomenon and cause pathological impairment in several diseases, such as Alzheimer's disease (AD), epilepsy and schizophrenia. However, the specific pathological changes and mechanisms of reactivation in each disease are different. Recent work has also enlightened some of the underlying pathological mechanisms of neuronal reactivation in these diseases. In this review, we further describe how SWRs, ripples and slow oscillations are affected in Alzheimer's disease, epilepsy, and schizophrenia. We then compare the differences of neuronal reactivation and discuss how different reactivation abnormalities cause pathological changes in these diseases. Aberrant neural reactivation provides insights into disease pathogenesis and may even serve as biomarkers for early disease progression and treatment response.
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Affiliation(s)
- Lei-Ying Xiang
- School of Educational Sciences, Chongqing Normal University, Chongqing, PR China
| | - Xiao-Yi Chen
- School of Educational Sciences, Chongqing Normal University, Chongqing, PR China
| | - Li-Ming Lu
- School of Educational Sciences, Chongqing Normal University, Chongqing, PR China
| | - Ming-Hui Kong
- School of Educational Sciences, Chongqing Normal University, Chongqing, PR China
| | - Qi Ji
- Department of Medical Psychology, Army Medical University, Chongqing, PR China
| | - Yu Xiong
- Department of Stomatology, Southwest Hospital, Chongqing, PR China
| | - Mei-Ming Xie
- Chinese People's Liberation Army Western Theater General Hospital, Chengdu, PR China
| | - Xin-Ling Jian
- No. 950 Hospital of the Chinese People's Liberation Army, Yecheng, PR China
| | - Zhi-Ru Zhu
- Department of Medical Psychology, Army Medical University, Chongqing, PR China.
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Young RA, Shin JD, Guo Z, Jadhav SP. Hippocampal-prefrontal communication subspaces align with behavioral and network patterns in a spatial memory task. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.08.601617. [PMID: 39026752 PMCID: PMC11257456 DOI: 10.1101/2024.07.08.601617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Rhythmic network states have been theorized to facilitate communication between brain regions, but how these oscillations influence communication subspaces, i.e, the low-dimensional neural activity patterns that mediate inter-regional communication, and in turn how subspaces impact behavior remains unclear. Using a spatial memory task in rats, we simultaneously recorded ensembles from hippocampal CA1 and the prefrontal cortex (PFC) to address this question. We found that task behaviors best aligned with low-dimensional, shared subspaces between these regions, rather than local activity in either region. Critically, both network oscillations and speed modulated the structure and performance of this communication subspace. Contrary to expectations, theta coherence did not better predict CA1-PFC shared activity, while theta power played a more significant role. To understand the communication space, we visualized shared CA1-PFC communication geometry using manifold techniques and found ring-like structures. We hypothesize that these shared activity manifolds are utilized to mediate the task behavior. These findings suggest that memory-guided behaviors are driven by shared CA1-PFC interactions that are dynamically modulated by oscillatory states, offering a novel perspective on the interplay between rhythms and behaviorally relevant neural communication.
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3
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Shin JD, Jadhav SP. Prefrontal cortical ripples mediate top-down suppression of hippocampal reactivation during sleep memory consolidation. Curr Biol 2024; 34:2801-2811.e9. [PMID: 38834064 PMCID: PMC11233241 DOI: 10.1016/j.cub.2024.05.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 04/17/2024] [Accepted: 05/09/2024] [Indexed: 06/06/2024]
Abstract
Consolidation of initially encoded hippocampal representations in the neocortex through reactivation is crucial for long-term memory formation and is facilitated by the coordination of hippocampal sharp-wave ripples (SWRs) with cortical slow and spindle oscillations during non-REM sleep. Recent evidence suggests that high-frequency cortical ripples can also coordinate with hippocampal SWRs in support of consolidation; however, the contribution of cortical ripples to reactivation remains unclear. We used high-density, continuous recordings in the hippocampus (area CA1) and prefrontal cortex (PFC) over the course of spatial learning and show that independent PFC ripples dissociated from SWRs are prevalent in NREM sleep and predominantly suppress hippocampal activity. PFC ripples paradoxically mediate top-down suppression of hippocampal reactivation rather than coordination, and this suppression is stronger for assemblies that are reactivated during coordinated CA1-PFC ripples for consolidation of recent experiences. Further, we show non-canonical, serial coordination of independent cortical ripples with slow and spindle oscillations, which are known signatures of memory consolidation. These results establish a role for prefrontal cortical ripples in top-down regulation of behaviorally relevant hippocampal representations during consolidation.
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Affiliation(s)
- Justin D Shin
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, 415 South Street, Waltham, MA 02453, USA
| | - Shantanu P Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, 415 South Street, Waltham, MA 02453, USA.
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Giri B, Kinsky N, Kaya U, Maboudi K, Abel T, Diba K. Sleep loss diminishes hippocampal reactivation and replay. Nature 2024; 630:935-942. [PMID: 38867049 DOI: 10.1038/s41586-024-07538-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 05/07/2024] [Indexed: 06/14/2024]
Abstract
Memories benefit from sleep1, and the reactivation and replay of waking experiences during hippocampal sharp-wave ripples (SWRs) are considered to be crucial for this process2. However, little is known about how these patterns are impacted by sleep loss. Here we recorded CA1 neuronal activity over 12 h in rats across maze exploration, sleep and sleep deprivation, followed by recovery sleep. We found that SWRs showed sustained or higher rates during sleep deprivation but with lower power and higher frequency ripples. Pyramidal cells exhibited sustained firing during sleep deprivation and reduced firing during sleep, yet their firing rates were comparable during SWRs regardless of sleep state. Despite the robust firing and abundance of SWRs during sleep deprivation, we found that the reactivation and replay of neuronal firing patterns was diminished during these periods and, in some cases, completely abolished compared to ad libitum sleep. Reactivation partially rebounded after recovery sleep but failed to reach the levels found in natural sleep. These results delineate the adverse consequences of sleep loss on hippocampal function at the network level and reveal a dissociation between the many SWRs elicited during sleep deprivation and the few reactivations and replays that occur during these events.
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Affiliation(s)
- Bapun Giri
- Department of Anesthesiology, University of Michigan Medical School, Ann Arbor, MI, USA
- Department of Psychology, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Nathaniel Kinsky
- Department of Anesthesiology, University of Michigan Medical School, Ann Arbor, MI, USA
| | - Utku Kaya
- Department of Anesthesiology, University of Michigan Medical School, Ann Arbor, MI, USA
| | - Kourosh Maboudi
- Department of Anesthesiology, University of Michigan Medical School, Ann Arbor, MI, USA
- Department of Psychology, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - Ted Abel
- Department of Neuroscience and Pharmacology, Iowa Neuroscience Institute, University of Iowa, Iowa City, IA, USA
| | - Kamran Diba
- Department of Anesthesiology, University of Michigan Medical School, Ann Arbor, MI, USA.
- Neuroscience Graduate Program, University of Michigan, Ann Arbor, MI, USA.
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Iwata T, Yanagisawa T, Ikegaya Y, Smallwood J, Fukuma R, Oshino S, Tani N, Khoo HM, Kishima H. Hippocampal sharp-wave ripples correlate with periods of naturally occurring self-generated thoughts in humans. Nat Commun 2024; 15:4078. [PMID: 38778048 PMCID: PMC11111804 DOI: 10.1038/s41467-024-48367-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 04/29/2024] [Indexed: 05/25/2024] Open
Abstract
Core features of human cognition highlight the importance of the capacity to focus on information distinct from events in the here and now, such as mind wandering. However, the brain mechanisms that underpin these self-generated states remain unclear. An emerging hypothesis is that self-generated states depend on the process of memory replay, which is linked to sharp-wave ripples (SWRs), which are transient high-frequency oscillations originating in the hippocampus. Local field potentials were recorded from the hippocampus of 10 patients with epilepsy for up to 15 days, and experience sampling was used to describe their association with ongoing thought patterns. The SWR rates were higher during extended periods of time when participants' ongoing thoughts were more vivid, less desirable, had more imaginable properties, and exhibited fewer correlations with an external task. These data suggest a role for SWR in the patterns of ongoing thoughts that humans experience in daily life.
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Affiliation(s)
- Takamitsu Iwata
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
| | - Takufumi Yanagisawa
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan.
- Institute for Advanced Co-Creation Studies, Osaka University, Osaka, 565-0871, Japan.
| | - Yuji Ikegaya
- Laboratory of Chemical Pharmacology, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan
- Institute for AI and Beyond, The University of Tokyo, Tokyo, 113-0033, Japan
- National Institute of Information and Communications Technology, Center for Information and Neural Networks, Suita City, Osaka, 565-0871, Japan
| | - Jonathan Smallwood
- Department of Psychology, Queen's University, Kingston, ON, K7L 3N6, Canada
| | - Ryohei Fukuma
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
- Institute for Advanced Co-Creation Studies, Osaka University, Osaka, 565-0871, Japan
| | - Satoru Oshino
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
| | - Naoki Tani
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
| | - Hui Ming Khoo
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
| | - Haruhiko Kishima
- Department of Neurosurgery, Graduate School of Medicine, Osaka University, Osaka, 565-0871, Japan
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Teichert T, Papp L, Vincze F, Burns N, Goodell B, Ahmed Z, Holmes A, Gray CM, Chamanzar M, Gurnsey K. Volumetric mesoscopic electrophysiology: a new imaging modality for the non-human primate. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.13.593946. [PMID: 38798595 PMCID: PMC11118515 DOI: 10.1101/2024.05.13.593946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
The primate brain is a densely interconnected organ whose function is best understood by recording from the entire structure in parallel, rather than parts of it in sequence. However, available methods either have limited temporal resolution (functional magnetic resonance imaging), limited spatial resolution (macroscopic electroencephalography), or a limited field of view (microscopic electrophysiology). To address this need, we developed a volumetric, mesoscopic recording approach ( MePhys ) by tessellating the volume of a monkey hemisphere with 992 electrode contacts that were distributed across 62 chronically implanted multi-electrode shafts. We showcase the scientific promise of MePhys by describing the functional interactions of local field potentials between the more than 300,000 simultaneously recorded pairs of electrodes. We find that a subanesthetic dose of ketamine -believed to mimic certain aspects of psychosis- can create a pronounced state of functional disconnection and prevent the formation of stable large-scale intrinsic states. We conclude that MePhys provides a new and fundamentally distinct window into brain function whose unique profile of strengths and weaknesses complements existing approaches in synergistic ways.
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Wang Y, Wang X, Wang L, Zheng L, Meng S, Zhu N, An X, Wang L, Yang J, Zheng C, Ming D. Dynamic prediction of goal location by coordinated representation of prefrontal-hippocampal theta sequences. Curr Biol 2024; 34:1866-1879.e6. [PMID: 38608677 DOI: 10.1016/j.cub.2024.03.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 01/20/2024] [Accepted: 03/19/2024] [Indexed: 04/14/2024]
Abstract
Prefrontal (PFC) and hippocampal (HPC) sequences of neuronal firing modulated by theta rhythms could represent upcoming choices during spatial memory-guided decision-making. How the PFC-HPC network dynamically coordinates theta sequences to predict specific goal locations and how it is interrupted in memory impairments induced by amyloid beta (Aβ) remain unclear. Here, we detected theta sequences of firing activities of PFC neurons and HPC place cells during goal-directed spatial memory tasks. We found that PFC ensembles exhibited predictive representation of the specific goal location since the starting phase of memory retrieval, earlier than the hippocampus. High predictive accuracy of PFC theta sequences existed during successful memory retrieval and positively correlated with memory performance. Coordinated PFC-HPC sequences showed PFC-dominant prediction of goal locations during successful memory retrieval. Furthermore, we found that theta sequences of both regions still existed under Aβ accumulation, whereas their predictive representation of goal locations was weakened with disrupted spatial representation of HPC place cells and PFC neurons. These findings highlight the essential role of coordinated PFC-HPC sequences in successful memory retrieval of a precise goal location.
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Affiliation(s)
- Yimeng Wang
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China
| | - Xueling Wang
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China
| | - Ling Wang
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China; Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China
| | - Li Zheng
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China
| | - Shuang Meng
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China
| | - Nan Zhu
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China
| | - Xingwei An
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China; Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China
| | - Lei Wang
- School of Statistics and Data Science, Nankai University, Tianjin 300071, China.
| | - Jiajia Yang
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China; Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China; Haihe Laboratory of Brain-Computer Interaction and Human-Machine Integration, Tianjin 300072, China.
| | - Chenguang Zheng
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China; Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China; Haihe Laboratory of Brain-Computer Interaction and Human-Machine Integration, Tianjin 300072, China.
| | - Dong Ming
- Academy of Medical Engineering and Translational Medicine, Medical College, Tianjin University, Tianjin 300072, China; Tianjin Key Laboratory of Brain Science and Neuroengineering, Tianjin 300072, China; Haihe Laboratory of Brain-Computer Interaction and Human-Machine Integration, Tianjin 300072, China.
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8
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Seenivasan P, Basak R, Narayanan R. Cross-strata co-occurrence of ripples with theta-frequency oscillations in the hippocampus of foraging rats. J Physiol 2024; 602:2315-2341. [PMID: 38654581 PMCID: PMC7615956 DOI: 10.1113/jp284629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 04/04/2024] [Indexed: 04/26/2024] Open
Abstract
Brain rhythms have been postulated to play central roles in animal cognition. A prominently reported dichotomy of hippocampal rhythms links theta-frequency oscillations (4-12 Hz) and ripples (120-250 Hz) exclusively to preparatory and consummatory behaviours, respectively. However, because of the differential power expression of these two signals across hippocampal strata, such exclusivity requires validation through analyses of simultaneous multi-strata recordings. We assessed co-occurrence of theta-frequency oscillations with ripples in multi-channel recordings of extracellular potentials across hippocampal strata from foraging rats. We detected all ripple events from an identified stratum pyramidale (SP) channel. We then defined theta epochs based on theta oscillations detected from the stratum lacunosum-moleculare (SLM) or the stratum radiatum (SR). We found ∼20% of ripple events (in SP) to co-occur with theta epochs identified from SR/SLM channels, defined here as theta ripples. Strikingly, when theta epochs were instead identified from the SP channel, such co-occurrences were significantly reduced because of a progressive reduction in theta power along the SLM-SR-SP axis. Behaviourally, we found most theta ripples to occur during immobile periods, with comparable theta power during exploratory and immobile theta epochs. Furthermore, the progressive reduction in theta power along the SLM-SR-SP axis was common to exploratory and immobile periods. Finally, we found a strong theta-phase preference of theta ripples within the fourth quadrant [3π/2 - 2π] of the associated theta oscillation. The prevalence of theta ripples expands the potential roles of ripple-frequency oscillations to span the continuum of encoding, retrieval and consolidation, achieved through interactions with theta oscillations. KEY POINTS: The brain manifests oscillations in recorded electrical potentials, with different frequencies of oscillation associated with distinct behavioural states. A prominently reported dichotomy assigns theta-frequency oscillations (4-12 Hz) and ripples (120-250 Hz) recorded in the hippocampus to be exclusively associated with preparatory and consummatory behaviours, respectively. Our multi-strata recordings from the rodent hippocampus coupled with cross-strata analyses provide direct quantitative evidence for the occurrence of ripple events nested within theta oscillations. These results highlight the need for an analysis pipeline that explicitly accounts for the specific strata where individual oscillatory power is high, in analysing simultaneously recorded data from multiple strata. Our observations open avenues for investigations involving cross-strata interactions between theta oscillations and ripples across different behavioural states.
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Affiliation(s)
- Pavithraa Seenivasan
- Cellular Neurophysiology Laboratory, Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India
| | - Reshma Basak
- Cellular Neurophysiology Laboratory, Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India
| | - Rishikesh Narayanan
- Cellular Neurophysiology Laboratory, Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India
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Wang M, Lassers SB, Vakilna YS, Mander BA, Tang WC, Brewer GJ. Spindle oscillations in communicating axons within a reconstituted hippocampal formation are strongest in CA3 without thalamus. Sci Rep 2024; 14:8384. [PMID: 38600114 PMCID: PMC11006914 DOI: 10.1038/s41598-024-58002-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/25/2024] [Indexed: 04/12/2024] Open
Abstract
Spindle-shaped waves of oscillations emerge in EEG scalp recordings during human and rodent non-REM sleep. The association of these 10-16 Hz oscillations with events during prior wakefulness suggests a role in memory consolidation. Human and rodent depth electrodes in the brain record strong spindles throughout the cortex and hippocampus, with possible origins in the thalamus. However, the source and targets of the spindle oscillations from the hippocampus are unclear. Here, we employed an in vitro reconstruction of four subregions of the hippocampal formation with separate microfluidic tunnels for single axon communication between subregions assembled on top of a microelectrode array. We recorded spontaneous 400-1000 ms long spindle waves at 10-16 Hz in single axons passing between subregions as well as from individual neurons in those subregions. Spindles were nested within slow waves. The highest amplitudes and most frequent occurrence suggest origins in CA3 neurons that send feed-forward axons into CA1 and feedback axons into DG. Spindles had 50-70% slower conduction velocities than spikes and were not phase-locked to spikes suggesting that spindle mechanisms are independent of action potentials. Therefore, consolidation of declarative-cognitive memories in the hippocampus may be separate from the more easily accessible consolidation of memories related to thalamic motor function.
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Affiliation(s)
- Mengke Wang
- Department of Biomedical Engineering, University of California, Irvine, CA, 92697, USA
| | - Samuel B Lassers
- Department of Biomedical Engineering, University of California, Irvine, CA, 92697, USA
| | - Yash S Vakilna
- Texas Institute of Restorative Neurotechnologies (TIRN), The University of Texas Health Science Center (UTHealth), Houston, TX, 77030, USA
| | - Bryce A Mander
- Center for Neurobiology of Learning and Memory and MIND Center, University of California, Irvine, CA, 92697, USA
- Institute for Memory Impairments and Neurological Disorders, University of California, Irvine, CA, 92697, USA
- Department of Psychiatry and Human Behavior, University of California, Irvine, CA, 92868, USA
| | - William C Tang
- Department of Biomedical Engineering, University of California, Irvine, CA, 92697, USA
| | - Gregory J Brewer
- Department of Biomedical Engineering, University of California, Irvine, CA, 92697, USA.
- Center for Neurobiology of Learning and Memory and MIND Center, University of California, Irvine, CA, 92697, USA.
- Institute for Memory Impairments and Neurological Disorders, University of California, Irvine, CA, 92697, USA.
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10
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Negrón-Oyarzo I, Dib T, Chacana-Véliz L, López-Quilodrán N, Urrutia-Piñones J. Large-scale coupling of prefrontal activity patterns as a mechanism for cognitive control in health and disease: evidence from rodent models. Front Neural Circuits 2024; 18:1286111. [PMID: 38638163 PMCID: PMC11024307 DOI: 10.3389/fncir.2024.1286111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 03/11/2024] [Indexed: 04/20/2024] Open
Abstract
Cognitive control of behavior is crucial for well-being, as allows subject to adapt to changing environments in a goal-directed way. Changes in cognitive control of behavior is observed during cognitive decline in elderly and in pathological mental conditions. Therefore, the recovery of cognitive control may provide a reliable preventive and therapeutic strategy. However, its neural basis is not completely understood. Cognitive control is supported by the prefrontal cortex, structure that integrates relevant information for the appropriate organization of behavior. At neurophysiological level, it is suggested that cognitive control is supported by local and large-scale synchronization of oscillatory activity patterns and neural spiking activity between the prefrontal cortex and distributed neural networks. In this review, we focus mainly on rodent models approaching the neuronal origin of these prefrontal patterns, and the cognitive and behavioral relevance of its coordination with distributed brain systems. We also examine the relationship between cognitive control and neural activity patterns in the prefrontal cortex, and its role in normal cognitive decline and pathological mental conditions. Finally, based on these body of evidence, we propose a common mechanism that may underlie the impaired cognitive control of behavior.
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Affiliation(s)
- Ignacio Negrón-Oyarzo
- Instituto de Fisiología, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
| | - Tatiana Dib
- Instituto de Fisiología, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
| | - Lorena Chacana-Véliz
- Instituto de Fisiología, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
- Programa de Doctorado en Ciencias Mención en Neurociencia, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
| | - Nélida López-Quilodrán
- Instituto de Fisiología, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
- Programa de Doctorado en Ciencias Mención en Neurociencia, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
| | - Jocelyn Urrutia-Piñones
- Instituto de Fisiología, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
- Programa de Doctorado en Ciencias Mención en Neurociencia, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
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11
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Nguyen ND, Lutas A, Amsalem O, Fernando J, Ahn AYE, Hakim R, Vergara J, McMahon J, Dimidschstein J, Sabatini BL, Andermann ML. Cortical reactivations predict future sensory responses. Nature 2024; 625:110-118. [PMID: 38093002 PMCID: PMC11014741 DOI: 10.1038/s41586-023-06810-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 10/31/2023] [Indexed: 01/05/2024]
Abstract
Many theories of offline memory consolidation posit that the pattern of neurons activated during a salient sensory experience will be faithfully reactivated, thereby stabilizing the pattern1,2. However, sensory-evoked patterns are not stable but, instead, drift across repeated experiences3-6. Here, to investigate the relationship between reactivations and the drift of sensory representations, we imaged the calcium activity of thousands of excitatory neurons in the mouse lateral visual cortex. During the minute after a visual stimulus, we observed transient, stimulus-specific reactivations, often coupled with hippocampal sharp-wave ripples. Stimulus-specific reactivations were abolished by local cortical silencing during the preceding stimulus. Reactivations early in a session systematically differed from the pattern evoked by the previous stimulus-they were more similar to future stimulus response patterns, thereby predicting both within-day and across-day representational drift. In particular, neurons that participated proportionally more or less in early stimulus reactivations than in stimulus response patterns gradually increased or decreased their future stimulus responses, respectively. Indeed, we could accurately predict future changes in stimulus responses and the separation of responses to distinct stimuli using only the rate and content of reactivations. Thus, reactivations may contribute to a gradual drift and separation in sensory cortical response patterns, thereby enhancing sensory discrimination7.
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Affiliation(s)
- Nghia D Nguyen
- Program in Neuroscience, Harvard University, Boston, MA, USA
| | - Andrew Lutas
- Division of Endocrinology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA
- Diabetes, Endocrinology and Obesity Branch, National Institutes of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA
| | - Oren Amsalem
- Division of Endocrinology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Jesseba Fernando
- Division of Endocrinology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Andy Young-Eon Ahn
- Division of Endocrinology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA
| | - Richard Hakim
- Program in Neuroscience, Harvard University, Boston, MA, USA
- Howard Hughes Medical Institute, Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Josselyn Vergara
- Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA
| | - Justin McMahon
- Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA
| | - Jordane Dimidschstein
- Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA
| | - Bernardo L Sabatini
- Program in Neuroscience, Harvard University, Boston, MA, USA
- Howard Hughes Medical Institute, Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Mark L Andermann
- Program in Neuroscience, Harvard University, Boston, MA, USA.
- Division of Endocrinology, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA, USA.
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
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12
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Jarovi J, Pilkiw M, Takehara-Nishiuchi K. Prefrontal neuronal ensembles link prior knowledge with novel actions during flexible action selection. Cell Rep 2023; 42:113492. [PMID: 37999978 DOI: 10.1016/j.celrep.2023.113492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 10/23/2023] [Accepted: 11/10/2023] [Indexed: 11/26/2023] Open
Abstract
We make decisions based on currently perceivable information or an internal model of the environment. The medial prefrontal cortex (mPFC) and its interaction with the hippocampus have been implicated in the latter, model-based decision-making; however, the underlying computational properties remain incompletely understood. We have examined mPFC spiking and hippocampal oscillatory activity while rats flexibly select new actions using a known associative structure of environmental cues and outcomes. During action selection, the mPFC reinstates representations of the associative structure. These awake reactivation events are accompanied by synchronous firings among neurons coding the associative structure and those coding actions. Moreover, their functional coupling is strengthened upon the reactivation events leading to adaptive actions. In contrast, only cue-coding neurons improve functional coupling during hippocampal sharp wave ripples. Thus, the lack of direct experience disconnects the mPFC from the hippocampus to independently form self-organized neuronal ensemble dynamics linking prior knowledge with novel actions.
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Affiliation(s)
- Justin Jarovi
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada
| | - Maryna Pilkiw
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada
| | - Kaori Takehara-Nishiuchi
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada; Department of Psychology, University of Toronto, Toronto, ON M5S 3G3, Canada; Collaborative Program in Neuroscience, University of Toronto, Toronto, ON M5S 1A8, Canada.
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13
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Shin JD, Jadhav SP. Cortical ripples mediate top-down suppression of hippocampal reactivation during sleep memory consolidation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.12.571373. [PMID: 38168420 PMCID: PMC10760112 DOI: 10.1101/2023.12.12.571373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Consolidation of initially encoded hippocampal representations in the neocortex through reactivation is crucial for long-term memory formation, and is facilitated by the coordination of hippocampal sharp-wave ripples (SWRs) with cortical oscillations during non-REM sleep. However, the contribution of high-frequency cortical ripples to consolidation is still unclear. We used continuous recordings in the hippocampus and prefrontal cortex (PFC) over the course of spatial learning and show that independent PFC ripples, when dissociated from SWRs, predominantly suppress hippocampal activity in non-REM sleep. PFC ripples paradoxically mediate top-down suppression of hippocampal reactivation, which is inversely related to reactivation strength during coordinated CA1-PFC ripples. Further, we show non-canonical, serial coordination of ripples with cortical slow and spindle oscillations. These results establish a role for cortical ripples in regulating consolidation.
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Affiliation(s)
- Justin D. Shin
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, MA 02453, USA
| | - Shantanu P. Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, MA 02453, USA
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14
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Sebastian ER, Quintanilla JP, Sánchez-Aguilera A, Esparza J, Cid E, de la Prida LM. Topological analysis of sharp-wave ripple waveforms reveals input mechanisms behind feature variations. Nat Neurosci 2023; 26:2171-2181. [PMID: 37946048 PMCID: PMC10689241 DOI: 10.1038/s41593-023-01471-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 09/22/2023] [Indexed: 11/12/2023]
Abstract
The reactivation of experience-based neural activity patterns in the hippocampus is crucial for learning and memory. These reactivation patterns and their associated sharp-wave ripples (SWRs) are highly variable. However, this variability is missed by commonly used spectral methods. Here, we use topological and dimensionality reduction techniques to analyze the waveform of ripples recorded at the pyramidal layer of CA1. We show that SWR waveforms distribute along a continuum in a low-dimensional space, which conveys information about the underlying layer-specific synaptic inputs. A decoder trained in this space successfully links individual ripples with their expected sinks and sources, demonstrating how physiological mechanisms shape SWR variability. Furthermore, we found that SWR waveforms segregated differently during wakefulness and sleep before and after a series of cognitive tasks, with striking effects of novelty and learning. Our results thus highlight how the topological analysis of ripple waveforms enables a deeper physiological understanding of SWRs.
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Affiliation(s)
| | | | - Alberto Sánchez-Aguilera
- Instituto Cajal. CSIC, Madrid, Spain
- Department of Physiology, Faculty of Medicine, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Elena Cid
- Instituto Cajal. CSIC, Madrid, Spain
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15
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Feliciano-Ramos PA, Galazo M, Penagos H, Wilson M. Hippocampal memory reactivation during sleep is correlated with specific cortical states of the retrosplenial and prefrontal cortices. Learn Mem 2023; 30:221-236. [PMID: 37758288 PMCID: PMC10547389 DOI: 10.1101/lm.053834.123] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 08/25/2023] [Indexed: 10/03/2023]
Abstract
Episodic memories are thought to be stabilized through the coordination of cortico-hippocampal activity during sleep. However, the timing and mechanism of this coordination remain unknown. To investigate this, we studied the relationship between hippocampal reactivation and slow-wave sleep up and down states of the retrosplenial cortex (RTC) and prefrontal cortex (PFC). We found that hippocampal reactivations are strongly correlated with specific cortical states. Reactivation occurred during sustained cortical Up states or during the transition from up to down state. Interestingly, the most prevalent interaction with memory reactivation in the hippocampus occurred during sustained up states of the PFC and RTC, while hippocampal reactivation and cortical up-to-down state transition in the RTC showed the strongest coordination. Reactivation usually occurred within 150-200 msec of a cortical Up state onset, indicating that a buildup of excitation during cortical Up state activity influences the probability of memory reactivation in CA1. Conversely, CA1 reactivation occurred 30-50 msec before the onset of a cortical down state, suggesting that memory reactivation affects down state initiation in the RTC and PFC, but the effect in the RTC was more robust. Our findings provide evidence that supports and highlights the complexity of bidirectional communication between cortical regions and the hippocampus during sleep.
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Affiliation(s)
- Pedro A Feliciano-Ramos
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Maria Galazo
- Neuroscience Program, Tulane Brain Institute, Tulane University, New Orleans, Louisana 70118, USA
- Department of Cell and Molecular Biology, Tulane Brain Institute, Tulane University, New Orleans, Louisana 70118, USA
| | - Hector Penagos
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Center for Brains, Minds, and Machines, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Matthew Wilson
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Center for Brains, Minds, and Machines, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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16
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den Bakker H, Van Dijck M, Sun JJ, Kloosterman F. Sharp-wave-ripple-associated activity in the medial prefrontal cortex supports spatial rule switching. Cell Rep 2023; 42:112959. [PMID: 37590137 DOI: 10.1016/j.celrep.2023.112959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 06/22/2023] [Accepted: 07/24/2023] [Indexed: 08/19/2023] Open
Abstract
Previous studies have highlighted an important role for hippocampal sharp-wave ripples in spatial alternation learning, as well as in modulating activity in the medial prefrontal cortex (mPFC). However, the direct influence of hippocampal sharp-wave ripples on mPFC activity during spatial alternation learning has not been investigated. Here, we train Long Evans rats on a three-arm radial maze to perform a sequence of alternations. Three alternation sequences needed to be learned, and while learning a sequence, the activity in the mPFC was inhibited either directly following sharp-wave ripples in the hippocampus (on-time condition) or with a randomized delay (delayed condition). In the on-time condition, the behavioral performance is significantly worse compared to the same animals in the delayed inhibition condition, as measured by a lower correct alternation performance and more perseverative behavior. This indicates that the activity in the mPFC directly following hippocampal sharp-wave ripples is necessary for spatial rule switching.
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Affiliation(s)
- Hanna den Bakker
- Neuro-Electronics Research Flanders, Leuven, Belgium; Brain & Cognition, KU Leuven, Leuven, Belgium
| | - Marie Van Dijck
- Neuro-Electronics Research Flanders, Leuven, Belgium; Department of Chemistry, KU Leuven, Leuven, Belgium
| | - Jyh-Jang Sun
- Neuro-Electronics Research Flanders, Leuven, Belgium
| | - Fabian Kloosterman
- Neuro-Electronics Research Flanders, Leuven, Belgium; Brain & Cognition, KU Leuven, Leuven, Belgium.
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17
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Harvey RE, Robinson HL, Liu C, Oliva A, Fernandez-Ruiz A. Hippocampo-cortical circuits for selective memory encoding, routing, and replay. Neuron 2023; 111:2076-2090.e9. [PMID: 37196658 PMCID: PMC11146684 DOI: 10.1016/j.neuron.2023.04.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 03/15/2023] [Accepted: 04/12/2023] [Indexed: 05/19/2023]
Abstract
Traditionally considered a homogeneous cell type, hippocampal pyramidal cells have been recently shown to be highly diverse. However, how this cellular diversity relates to the different hippocampal network computations that support memory-guided behavior is not yet known. We show that the anatomical identity of pyramidal cells is a major organizing principle of CA1 assembly dynamics, the emergence of memory replay, and cortical projection patterns in rats. Segregated pyramidal cell subpopulations encoded trajectory and choice-specific information or tracked changes in reward configuration respectively, and their activity was selectively read out by different cortical targets. Furthermore, distinct hippocampo-cortical assemblies coordinated the reactivation of complementary memory representations. These findings reveal the existence of specialized hippocampo-cortical subcircuits and provide a cellular mechanism that supports the computational flexibility and memory capacities of these structures.
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Affiliation(s)
- Ryan E Harvey
- Department of Neurobiology & Behavior, Cornell University, Ithaca, NY, USA
| | - Heath L Robinson
- Department of Neurobiology & Behavior, Cornell University, Ithaca, NY, USA
| | - Can Liu
- Department of Neurobiology & Behavior, Cornell University, Ithaca, NY, USA
| | - Azahara Oliva
- Department of Neurobiology & Behavior, Cornell University, Ithaca, NY, USA.
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18
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Etemadi L, Enander JM, Jörntell H. Hippocampal output profoundly impacts the interpretation of tactile input patterns in SI cortical neurons. iScience 2023; 26:106885. [PMID: 37260754 PMCID: PMC10227419 DOI: 10.1016/j.isci.2023.106885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 04/13/2023] [Accepted: 05/11/2023] [Indexed: 06/02/2023] Open
Abstract
Due to continuous state variations in neocortical circuits, individual somatosensory cortex (SI) neurons in vivo display a variety of intracellular responses to the exact same spatiotemporal tactile input pattern. To manipulate the internal cortical state, we here used brief electrical stimulation of the output region of the hippocampus, which preceded the delivery of specific tactile afferent input patterns to digit 2 of the anesthetized rat. We find that hippocampal output had a diversified, remarkably strong impact on the intracellular response types displayed by each neuron in the primary SI to each given tactile input pattern. Qualitatively, this impact was comparable to that previously described for cortical output, which was surprising given the widely assumed specific roles of the hippocampus, such as in cortical memory formation. The findings show that hippocampal output can profoundly impact the state-dependent interpretation of tactile inputs and hence influence perception, potentially with affective and semantic components.
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Affiliation(s)
- Leila Etemadi
- Neural Basis of Sensorimotor Control, Department of Experimental Medical Science, Lund University, Lund, Sweden
| | - Jonas M.D. Enander
- Center for Social and Affective Neuroscience, Linköping University, Linköping, Sweden
| | - Henrik Jörntell
- Neural Basis of Sensorimotor Control, Department of Experimental Medical Science, Lund University, Lund, Sweden
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19
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Srinivasan A, Riceberg JS, Goodman MR, Srinivasan A, Guise KG, Shapiro ML. Goal Choices Modify Frontotemporal Memory Representations. J Neurosci 2023; 43:3353-3364. [PMID: 36977579 PMCID: PMC10162456 DOI: 10.1523/jneurosci.1939-22.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 03/08/2023] [Accepted: 03/13/2023] [Indexed: 03/29/2023] Open
Abstract
Adapting flexibly to changing circumstances is guided by memory of past choices, their outcomes in similar circumstances, and a method for choosing among potential actions. The hippocampus (HPC) is needed to remember episodes, and the prefrontal cortex (PFC) helps guide memory retrieval. Single-unit activity in the HPC and PFC correlates with such cognitive functions. Previous work recorded CA1 and mPFC activity as male rats performed a spatial reversal task in a plus maze that requires both structures, found that PFC activity helps reactivate HPC representations of pending goal choices but did not describe frontotemporal interactions after choices. We describe these interactions after choices here. CA1 activity tracked both current goal location and the past starting location of single trials; PFC activity tracked current goal location better than past start location. CA1 and PFC reciprocally modulated representations of each other both before and after goal choices. After choices, CA1 activity predicted changes in PFC activity in subsequent trials, and the magnitude of this prediction correlated with faster learning. In contrast, PFC start arm activity more strongly modulated CA1 activity after choices correlated with slower learning. Together, the results suggest post-choice HPC activity conveys retrospective signals to the PFC, which combines different paths to common goals into rules. In subsequent trials, prechoice mPFC activity modulates prospective CA1 signals informing goal selection.SIGNIFICANCE STATEMENT HPC and PFC activity supports cognitive flexibility in changing circumstances. HPC signals represent behavioral episodes that link the start, choice, and goal of paths. PFC signals represent rules that guide goal-directed actions. Although prior studies described HPC-PFC interactions preceding decisions in the plus maze, post-decision interactions were not investigated. Here, we show post-choice HPC and PFC activity distinguished the start and goal of paths, and CA1 signaled the past start of each trial more accurately than mPFC. Postchoice CA1 activity modulated subsequent PFC activity, so rewarded actions were more likely to occur. Together, the results show that in changing circumstances, HPC retrospective codes modulate subsequent PFC coding, which in turn modulates HPC prospective codes that predict choices.
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Affiliation(s)
- Aditya Srinivasan
- Department of Neuroscience and Experimental Therapeutics, Albany Medical College, Albany, New York 12208
| | - Justin S Riceberg
- Department of Neuroscience and Experimental Therapeutics, Albany Medical College, Albany, New York 12208
- Department of Psychiatry, Leon and Norma Hess Center for Science and Medicine, Icahn School of Medicine at Mount Sinai, New York, New York 10029
| | - Michael R Goodman
- Department of Neuroscience and Experimental Therapeutics, Albany Medical College, Albany, New York 12208
| | - Arvind Srinivasan
- College of Health Sciences, California Northstate University, Rancho Cordova, California 95670
| | - Kevin G Guise
- Friedman Brain Institute, Leon and Norma Hess Center for Science and Medicine, Icahn School of Medicine at Mount Sinai, New York, New York 10029
| | - Matthew L Shapiro
- Department of Neuroscience and Experimental Therapeutics, Albany Medical College, Albany, New York 12208
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20
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Brodt S, Inostroza M, Niethard N, Born J. Sleep-A brain-state serving systems memory consolidation. Neuron 2023; 111:1050-1075. [PMID: 37023710 DOI: 10.1016/j.neuron.2023.03.005] [Citation(s) in RCA: 40] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/23/2023] [Accepted: 03/06/2023] [Indexed: 04/08/2023]
Abstract
Although long-term memory consolidation is supported by sleep, it is unclear how it differs from that during wakefulness. Our review, focusing on recent advances in the field, identifies the repeated replay of neuronal firing patterns as a basic mechanism triggering consolidation during sleep and wakefulness. During sleep, memory replay occurs during slow-wave sleep (SWS) in hippocampal assemblies together with ripples, thalamic spindles, neocortical slow oscillations, and noradrenergic activity. Here, hippocampal replay likely favors the transformation of hippocampus-dependent episodic memory into schema-like neocortical memory. REM sleep following SWS might balance local synaptic rescaling accompanying memory transformation with a sleep-dependent homeostatic process of global synaptic renormalization. Sleep-dependent memory transformation is intensified during early development despite the immaturity of the hippocampus. Overall, beyond its greater efficacy, sleep consolidation differs from wake consolidation mainly in that it is supported, rather than impaired, by spontaneous hippocampal replay activity possibly gating memory formation in neocortex.
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Affiliation(s)
- Svenja Brodt
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany; Max-Planck-Institute for Biological Cybernetics, Tübingen, Germany
| | - Marion Inostroza
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | - Niels Niethard
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany
| | - Jan Born
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany; Werner Reichert Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany.
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21
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Hanganu-Opatz IL, Klausberger T, Sigurdsson T, Nieder A, Jacob SN, Bartos M, Sauer JF, Durstewitz D, Leibold C, Diester I. Resolving the prefrontal mechanisms of adaptive cognitive behaviors: A cross-species perspective. Neuron 2023; 111:1020-1036. [PMID: 37023708 DOI: 10.1016/j.neuron.2023.03.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Revised: 02/15/2023] [Accepted: 03/10/2023] [Indexed: 04/08/2023]
Abstract
The prefrontal cortex (PFC) enables a staggering variety of complex behaviors, such as planning actions, solving problems, and adapting to new situations according to external information and internal states. These higher-order abilities, collectively defined as adaptive cognitive behavior, require cellular ensembles that coordinate the tradeoff between the stability and flexibility of neural representations. While the mechanisms underlying the function of cellular ensembles are still unclear, recent experimental and theoretical studies suggest that temporal coordination dynamically binds prefrontal neurons into functional ensembles. A so far largely separate stream of research has investigated the prefrontal efferent and afferent connectivity. These two research streams have recently converged on the hypothesis that prefrontal connectivity patterns influence ensemble formation and the function of neurons within ensembles. Here, we propose a unitary concept that, leveraging a cross-species definition of prefrontal regions, explains how prefrontal ensembles adaptively regulate and efficiently coordinate multiple processes in distinct cognitive behaviors.
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Affiliation(s)
- Ileana L Hanganu-Opatz
- Institute of Developmental Neurophysiology, Center for Molecular Neurobiology, Hamburg Center of Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
| | - Thomas Klausberger
- Center for Brain Research, Division of Cognitive Neurobiology, Medical University of Vienna, Vienna, Austria
| | - Torfi Sigurdsson
- Institute of Neurophysiology, Goethe University, Frankfurt, Germany
| | - Andreas Nieder
- Animal Physiology Unit, Institute of Neurobiology, University of Tübingen, 72076 Tübingen, Germany
| | - Simon N Jacob
- Translational Neurotechnology Laboratory, Department of Neurosurgery, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany
| | - Marlene Bartos
- Institute for Physiology I, Medical Faculty, University of Freiburg, Freiburg im Breisgau, Germany
| | - Jonas-Frederic Sauer
- Institute for Physiology I, Medical Faculty, University of Freiburg, Freiburg im Breisgau, Germany
| | - Daniel Durstewitz
- Department of Theoretical Neuroscience, Central Institute of Mental Health & Faculty of Physics and Astronomy, Heidelberg University, Heidelberg, Germany
| | - Christian Leibold
- Faculty of Biology, Bernstein Center Freiburg, BrainLinks-BrainTools, University of Freiburg, Freiburg im Breisgau, Germany
| | - Ilka Diester
- Optophysiology - Optogenetics and Neurophysiology, IMBIT // BrainLinks-BrainTools, University of Freiburg, Freiburg im Breisgau, Germany.
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22
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Tang W, Shin JD, Jadhav SP. Geometric transformation of cognitive maps for generalization across hippocampal-prefrontal circuits. Cell Rep 2023; 42:112246. [PMID: 36924498 PMCID: PMC10124109 DOI: 10.1016/j.celrep.2023.112246] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 01/09/2023] [Accepted: 02/26/2023] [Indexed: 03/17/2023] Open
Abstract
The ability to abstract information to guide decisions during navigation across changing environments is essential for adaptation and requires the integrity of the hippocampal-prefrontal circuitry. The hippocampus encodes navigational information in a cognitive map, but it remains unclear how cognitive maps are transformed across hippocampal-prefrontal circuits to support abstraction and generalization. Here, we simultaneously record hippocampal-prefrontal ensembles as rats generalize navigational rules across distinct environments. We find that, whereas hippocampal representational maps maintain specificity of separate environments, prefrontal maps generalize across environments. Furthermore, while both maps are structured within a neural manifold of population activity, they have distinct representational geometries. Prefrontal geometry enables abstraction of rule-informative variables, a representational format that generalizes to novel conditions of existing variable classes. Hippocampal geometry lacks such abstraction. Together, these findings elucidate how cognitive maps are structured into distinct geometric representations to support abstraction and generalization while maintaining memory specificity.
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Affiliation(s)
- Wenbo Tang
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, MA 02453, USA.
| | - Justin D Shin
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, MA 02453, USA
| | - Shantanu P Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, MA 02453, USA.
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23
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Picard-Deland C, Bernardi G, Genzel L, Dresler M, Schoch SF. Memory reactivations during sleep: a neural basis of dream experiences? Trends Cogn Sci 2023; 27:568-582. [PMID: 36959079 DOI: 10.1016/j.tics.2023.02.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 02/18/2023] [Accepted: 02/28/2023] [Indexed: 03/25/2023]
Abstract
Newly encoded memory traces are spontaneously reactivated during sleep. Since their discovery in the 1990s, these memory reactivations have been discussed as a potential neural basis for dream experiences. New results from animal and human research, as well as from the rapidly growing field of sleep and dream engineering, provide essential insights into this question, and reveal both strong parallels and disparities between the two phenomena. We suggest that, although memory reactivations may contribute to subjective experiences across different states of consciousness, they are not likely to be the primary neural basis of dreaming. We identify important limitations in current research paradigms and suggest novel strategies to address this question empirically.
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Affiliation(s)
- Claudia Picard-Deland
- Dream and Nightmare Laboratory, Center for Advanced Research in Sleep Medicine, University of Montreal, Montreal, QC, Canada
| | - Giulio Bernardi
- Institutions, Markets, Technologies (IMT) School for Advanced Studies Lucca, Lucca, Italy
| | - Lisa Genzel
- Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen, The Netherlands
| | - Martin Dresler
- Donders Institute for Brain, Cognition, and Behaviour, Radboud University Medical Centre, Nijmegen, The Netherlands
| | - Sarah F Schoch
- Donders Institute for Brain, Cognition, and Behaviour, Radboud University Medical Centre, Nijmegen, The Netherlands; Center of Competence Sleep and Health Zurich, University of Zurich, Zurich, Switzerland.
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24
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Chen ZS, Wilson MA. How our understanding of memory replay evolves. J Neurophysiol 2023; 129:552-580. [PMID: 36752404 PMCID: PMC9988534 DOI: 10.1152/jn.00454.2022] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 01/20/2023] [Accepted: 01/20/2023] [Indexed: 02/09/2023] Open
Abstract
Memory reactivations and replay, widely reported in the hippocampus and cortex across species, have been implicated in memory consolidation, planning, and spatial and skill learning. Technological advances in electrophysiology, calcium imaging, and human neuroimaging techniques have enabled neuroscientists to measure large-scale neural activity with increasing spatiotemporal resolution and have provided opportunities for developing robust analytic methods to identify memory replay. In this article, we first review a large body of historically important and representative memory replay studies from the animal and human literature. We then discuss our current understanding of memory replay functions in learning, planning, and memory consolidation and further discuss the progress in computational modeling that has contributed to these improvements. Next, we review past and present analytic methods for replay analyses and discuss their limitations and challenges. Finally, looking ahead, we discuss some promising analytic methods for detecting nonstereotypical, behaviorally nondecodable structures from large-scale neural recordings. We argue that seamless integration of multisite recordings, real-time replay decoding, and closed-loop manipulation experiments will be essential for delineating the role of memory replay in a wide range of cognitive and motor functions.
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Affiliation(s)
- Zhe Sage Chen
- Department of Psychiatry, New York University Grossman School of Medicine, New York, New York, United States
- Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, New York, United States
- Neuroscience Institute, New York University Grossman School of Medicine, New York, New York, United States
- Department of Biomedical Engineering, New York University Tandon School of Engineering, Brooklyn, New York, United States
| | - Matthew A Wilson
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
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25
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Oliva A, Fernandez-Ruiz A, Karaba LA. CA2 orchestrates hippocampal network dynamics. Hippocampus 2023; 33:241-251. [PMID: 36575880 PMCID: PMC9974898 DOI: 10.1002/hipo.23495] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 11/25/2022] [Accepted: 12/11/2022] [Indexed: 12/29/2022]
Abstract
The hippocampus is composed of various subregions: CA1, CA2, CA3, and the dentate gyrus (DG). Despite the abundant hippocampal research literature, until recently, CA2 received little attention. The development of new genetic and physiological tools allowed recent studies characterizing the unique properties and functional roles of this hippocampal subregion. Despite its small size, the cellular content of CA2 is heterogeneous at the molecular and physiological levels. CA2 has been heavily implicated in social behaviors, including social memory. More generally, the mechanisms by which the hippocampus is involved in memory include the reactivation of neuronal ensembles following experience. This process is coordinated by synchronous network events known as sharp-wave ripples (SWRs). Recent evidence suggests that CA2 plays an important role in the generation of SWRs. The unique connectivity and physiological properties of CA2 pyramidal cells make this region a computational hub at the core of hippocampal information processing. Here, we review recent findings that support the role of CA2 in coordinating hippocampal network dynamics from a systems neuroscience perspective.
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Affiliation(s)
- Azahara Oliva
- Department of Neurobiology and Behavior, Cornell University, Ithaca, New York, USA
| | | | - Lindsay A Karaba
- Department of Neurobiology and Behavior, Cornell University, Ithaca, New York, USA
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Muza PM, Bush D, Pérez-González M, Zouhair I, Cleverley K, Sopena ML, Aoidi R, West SJ, Good M, Tybulewicz VL, Walker MC, Fisher EM, Chang P. Cognitive impairments in a Down syndrome model with abnormal hippocampal and prefrontal dynamics and cytoarchitecture. iScience 2023; 26:106073. [PMID: 36818290 PMCID: PMC9929862 DOI: 10.1016/j.isci.2023.106073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 12/22/2022] [Accepted: 01/24/2023] [Indexed: 01/29/2023] Open
Abstract
The Dp(10)2Yey mouse carries a ∼2.3-Mb intra-chromosomal duplication of mouse chromosome 10 (Mmu10) that has homology to human chromosome 21, making it an essential model for aspects of Down syndrome (DS, trisomy 21). In this study, we investigated neuronal dysfunction in the Dp(10)2Yey mouse and report spatial memory impairment and anxiety-like behavior alongside altered neural activity in the medial prefrontal cortex (mPFC) and hippocampus (HPC). Specifically, Dp(10)2Yey mice showed impaired spatial alternation associated with increased sharp-wave ripple activity in mPFC during a period of memory consolidation, and reduced mobility in a novel environment accompanied by reduced theta-gamma phase-amplitude coupling in HPC. Finally, we found alterations in the number of interneuron subtypes in mPFC and HPC that may contribute to the observed phenotypes and highlight potential approaches to ameliorate the effects of human trisomy 21.
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Affiliation(s)
- Phillip M. Muza
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
| | - Daniel Bush
- Department of Clinical and Experimental Epilepsy, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
- UCL Institute of Cognitive Neuroscience and UCL Queen Square Institute of Neurology, University College London, London WC1N 3AZ, UK
| | - Marta Pérez-González
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
| | - Ines Zouhair
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
| | - Karen Cleverley
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
| | - Miriam L. Sopena
- Bioinformatics and Biostatistics, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
| | - Rifdat Aoidi
- Immune Cell Biology and Down Syndrome Laboratory, The Francis Crick Institute, London NW1 1AT, UK
| | - Steven J. West
- Sainsbury Wellcome Centre, University College London, London W1T 4JG, UK
| | - Mark Good
- School of Psychology, Cardiff University, Cardiff CF10 3AT, UK
| | - Victor L.J. Tybulewicz
- Immune Cell Biology and Down Syndrome Laboratory, The Francis Crick Institute, London NW1 1AT, UK
- Corresponding author
| | - Matthew C. Walker
- Department of Clinical and Experimental Epilepsy, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
- Corresponding author
| | - Elizabeth M.C. Fisher
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
- Corresponding author
| | - Pishan Chang
- Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
- Department of Clinical and Experimental Epilepsy, UCL Queen Square Institute of Neurology, London WC1N 3BG, UK
- School of Physiology, Pharmacology, and Neuroscience, University of Bristol, Bristol BS8 1TD, UK
- Corresponding author
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Giri B, Kaya U, Maboudi K, Abel T, Diba K. Sleep loss diminishes hippocampal reactivation and replay. RESEARCH SQUARE 2023:rs.3.rs-2540186. [PMID: 36824950 PMCID: PMC9949250 DOI: 10.21203/rs.3.rs-2540186/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Memories benefit from sleep, and sleep loss immediately following learning has a negative impact on subsequent memory storage. Several prominent hypotheses ascribe a central role to hippocampal sharp-wave ripples (SWRs), and the concurrent reactivation and replay of neuronal patterns from waking experience, in the offline memory consolidation process that occurs during sleep. However, little is known about how SWRs, reactivation, and replay are affected when animals are subjected to sleep deprivation. We performed long duration (~12 h), high-density silicon probe recordings from rat hippocampal CA1 neurons, in animals that were either sleeping or sleep deprived following exposure to a novel maze environment. We found that SWRs showed a sustained rate of activity during sleep deprivation, similar to or higher than in natural sleep, but with decreased amplitudes for the sharp-waves combined with higher frequencies for the ripples. Furthermore, while hippocampal pyramidal cells showed a log-normal distribution of firing rates during sleep, these distributions were negatively skewed with a higher mean firing rate in both pyramidal cells and interneurons during sleep deprivation. During SWRs, however, firing rates were remarkably similar between both groups. Despite the abundant quantity of SWRs and the robust firing activity during these events in both groups, we found that reactivation of neurons was either completely abolished or significantly diminished during sleep deprivation compared to sleep. Interestingly, reactivation partially rebounded upon recovery sleep, but failed to reach the levels characteristic of natural sleep. Similarly, the number of replays were significantly lower during sleep deprivation and recovery sleep compared to natural sleep. These results provide a network-level account for the negative impact of sleep loss on hippocampal function and demonstrate that sleep loss impacts memory storage by causing a dissociation between the amount of SWRs and the replays and reactivations that take place during these events.
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Affiliation(s)
- Bapun Giri
- Dept of Anesthesiology and Neuroscience Graduate Program, 1150 W Medical Center Dr, University of Michigan Medical School, Ann Arbor, MI 48109
- Dept of Psychology, University of Wisconsin-Milwaukee, PO Box 413, Milwaukee, WI 53201
| | - Utku Kaya
- Dept of Anesthesiology and Neuroscience Graduate Program, 1150 W Medical Center Dr, University of Michigan Medical School, Ann Arbor, MI 48109
| | - Kourosh Maboudi
- Dept of Anesthesiology and Neuroscience Graduate Program, 1150 W Medical Center Dr, University of Michigan Medical School, Ann Arbor, MI 48109
- Dept of Psychology, University of Wisconsin-Milwaukee, PO Box 413, Milwaukee, WI 53201
| | - Ted Abel
- Department of Neuroscience and Pharmacology, Iowa Neuroscience Institute, University of Iowa, Iowa City, Iowa, USA
| | - Kamran Diba
- Dept of Anesthesiology and Neuroscience Graduate Program, 1150 W Medical Center Dr, University of Michigan Medical School, Ann Arbor, MI 48109
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28
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Karimi Abadchi J, Rezaei Z, Knöpfel T, McNaughton BL, Mohajerani MH. Inhibition is a prevalent mode of activity in the neocortex around awake hippocampal ripples in mice. eLife 2023; 12:79513. [PMID: 36645126 PMCID: PMC9876570 DOI: 10.7554/elife.79513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 01/06/2023] [Indexed: 01/17/2023] Open
Abstract
Coordinated peri-ripple activity in the hippocampal-neocortical network is essential for mnemonic information processing in the brain. Hippocampal ripples likely serve different functions in sleep and awake states. Thus, the corresponding neocortical activity patterns may differ in important ways. We addressed this possibility by conducting voltage and glutamate wide-field imaging of the neocortex with concurrent hippocampal electrophysiology in awake mice. Contrary to our previously published sleep results, deactivation and activation were dominant in post-ripple neocortical voltage and glutamate activity, respectively, especially in the agranular retrosplenial cortex (aRSC). Additionally, the spiking activity of aRSC neurons, estimated by two-photon calcium imaging, revealed the existence of two subpopulations of excitatory neurons with opposite peri-ripple modulation patterns: one increases and the other decreases firing rate. These differences in peri-ripple spatiotemporal patterns of neocortical activity in sleep versus awake states might underlie the reported differences in the function of sleep versus awake ripples.
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Affiliation(s)
- Javad Karimi Abadchi
- Canadian Centre for Behavioral Neuroscience, University of LethbridgeLethbridgeCanada
| | - Zahra Rezaei
- Canadian Centre for Behavioral Neuroscience, University of LethbridgeLethbridgeCanada
| | - Thomas Knöpfel
- Laboratory for Neuronal Circuit Dynamics, Imperial College LondonLondonUnited Kingdom
- Department of Physics, Hong Kong Baptist UniversityKowloon TongHong Kong
| | - Bruce L McNaughton
- Canadian Centre for Behavioral Neuroscience, University of LethbridgeLethbridgeCanada
- Department of Neurobiology and Behavior, University of CaliforniaIrvineUnited States
| | - Majid H Mohajerani
- Canadian Centre for Behavioral Neuroscience, University of LethbridgeLethbridgeCanada
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29
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Das A, Menon V. Replicable patterns of causal information flow between hippocampus and prefrontal cortex during spatial navigation and spatial-verbal memory formation. Cereb Cortex 2022; 32:5343-5361. [PMID: 35136979 PMCID: PMC9712747 DOI: 10.1093/cercor/bhac018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 01/11/2022] [Accepted: 01/13/2022] [Indexed: 12/27/2022] Open
Abstract
Interactions between the hippocampus and prefrontal cortex (PFC) play an essential role in both human spatial navigation and episodic memory, but the underlying causal flow of information between these regions across task domains is poorly understood. Here we use intracranial EEG recordings and spectrally resolved phase transfer entropy to investigate information flow during two different virtual spatial navigation and memory encoding/recall tasks and examine replicability of information flow patterns across spatial and verbal memory domains. Information theoretic analysis revealed a higher causal information flow from hippocampus to lateral PFC than in the reverse direction. Crucially, an asymmetric pattern of information flow was observed during memory encoding and recall periods of both spatial navigation tasks. Further analyses revealed frequency specificity of interactions characterized by greater bottom-up information flow from hippocampus to PFC in delta-theta band (0.5-8 Hz); in contrast, top-down information flow from PFC to hippocampus was stronger in beta band (12-30 Hz). Bayesian analysis revealed a high degree of replicability between the two spatial navigation tasks (Bayes factor > 5.46e+3) and across tasks spanning the spatial and verbal memory domains (Bayes factor > 7.32e+8). Our findings identify a domain-independent and replicable frequency-dependent feedback loop engaged during memory formation in the human brain.
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Affiliation(s)
- Anup Das
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Vinod Menon
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA
- Stanford Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305, USA
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30
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Sarmashghi M, Jadhav SP, Eden UT. Integrating Statistical and Machine Learning Approaches for Neural Classification. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2022; 10:119106-119118. [PMID: 37223667 PMCID: PMC10205093 DOI: 10.1109/access.2022.3221436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Neurons can code for multiple variables simultaneously and neuroscientists are often interested in classifying neurons based on their receptive field properties. Statistical models provide powerful tools for determining the factors influencing neural spiking activity and classifying individual neurons. However, as neural recording technologies have advanced to produce simultaneous spiking data from massive populations, classical statistical methods often lack the computational efficiency required to handle such data. Machine learning (ML) approaches are known for enabling efficient large scale data analyses; however, they typically require massive training sets with balanced data, along with accurate labels to fit well. Additionally, model assessment and interpretation are often more challenging for ML than for classical statistical methods. To address these challenges, we develop an integrated framework, combining statistical modeling and machine learning approaches to identify the coding properties of neurons from large populations. In order to demonstrate this framework, we apply these methods to data from a population of neurons recorded from rat hippocampus to characterize the distribution of spatial receptive fields in this region.
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Affiliation(s)
- Mehrad Sarmashghi
- Division of Systems Engineering, Boston University, Boston, MA 02215, USA
| | - Shantanu P Jadhav
- Department of Psychology, Brandeis University, Waltham, MA 02453, USA
| | - Uri T Eden
- Department of Mathematics and Statistics, Boston University, Boston, MA 02215, USA
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31
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Faubel RJ, Santos Canellas VS, Gaesser J, Beluk NH, Feinstein TN, Wang Y, Yankova M, Karunakaran KB, King SM, Ganapathiraju MK, Lo CW. Flow blockage disrupts cilia-driven fluid transport in the epileptic brain. Acta Neuropathol 2022; 144:691-706. [PMID: 35980457 DOI: 10.1007/s00401-022-02463-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 06/27/2022] [Accepted: 06/28/2022] [Indexed: 01/28/2023]
Abstract
A carpet of ependymal motile cilia lines the brain ventricular system, forming a network of flow channels and barriers that pattern cerebrospinal fluid (CSF) flow at the surface. This CSF transport system is evolutionary conserved, but its physiological function remains unknown. Here we investigated its potential role in epilepsy with studies focused on CDKL5 deficiency disorder (CDD), a neurodevelopmental disorder with early-onset epilepsy refractory to seizure medications and the most common cause of infant epilepsy. CDKL5 is a highly conserved X-linked gene suggesting its function in regulating cilia length and motion in the green alga Chlamydomonas might have implication in the etiology of CDD. Examination of the structure and function of airway motile cilia revealed both the CDD patients and the Cdkl5 knockout mice exhibit cilia lengthening and abnormal cilia motion. Similar defects were observed for brain ventricular cilia in the Cdkl5 knockout mice. Mapping ependymal cilia generated flow in the ventral third ventricle (v3V), a brain region with important physiological functions showed altered patterning of flow. Tracing of cilia-mediated inflow into v3V with fluorescent dye revealed the appearance of a flow barrier at the inlet of v3V in Cdkl5 knockout mice. Analysis of mice with a mutation in another epilepsy-associated kinase, Yes1, showed the same disturbance of cilia motion and flow patterning. The flow barrier was also observed in the Foxj1± and FOXJ1CreERT:Cdkl5y/fl mice, confirming the contribution of ventricular cilia to the flow disturbances. Importantly, mice exhibiting altered cilia-driven flow also showed increased susceptibility to anesthesia-induced seizure-like activity. The cilia-driven flow disturbance arises from altered cilia beating orientation with the disrupted polarity of the cilia anchoring rootlet meshwork. Together these findings indicate motile cilia disturbances have an essential role in CDD-associated seizures and beyond, suggesting cilia regulating kinases may be a therapeutic target for medication-resistant epilepsy.
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Affiliation(s)
- Regina J Faubel
- Department of Developmental Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA
| | - Veronica S Santos Canellas
- Department of Developmental Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA
| | - Jenna Gaesser
- Division of Child Neurology, Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA
| | - Nancy H Beluk
- Division of Radiology, University of Pittsburgh, Pittsburgh, PA, 15260, USA
| | - Tim N Feinstein
- Department of Developmental Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA
| | - Yong Wang
- Laboratory for Fluid Physics, Pattern Formation and Biocomplexity, Max Planck Institute for Dynamics and Self-Organization, Am Faßberg 17, 37077, Göttingen, Germany
| | - Maya Yankova
- Department of Molecular Biology and Biophysics, And Electron Microscopy Facility, University of Connecticut Health Center, Farmington, CT, 06030-3305, USA
| | - Kalyani B Karunakaran
- Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, 560012, India
| | - Stephen M King
- Department of Molecular Biology and Biophysics, And Electron Microscopy Facility, University of Connecticut Health Center, Farmington, CT, 06030-3305, USA
| | - Madhavi K Ganapathiraju
- Department of Biomedical Informatics, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA
| | - Cecilia W Lo
- Department of Developmental Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15201, USA.
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32
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Takehara-Nishiuchi K. Flexibility of memory for future-oriented cognition. Curr Opin Neurobiol 2022; 76:102622. [PMID: 35994840 DOI: 10.1016/j.conb.2022.102622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/15/2022] [Accepted: 07/21/2022] [Indexed: 11/26/2022]
Abstract
Memories of daily experiences contain incidental details unique to each experience as well as common latent patterns shared with others. Neural representations focusing on the latter aspect can be reinstated by similar new experiences even though their perceptual features do not match the original experiences perfectly. Such flexible memory use allows for faster learning and better decision-making in novel situations. Here, I review evidence from rodent and primate electrophysiological studies to discuss how memory flexibility is implemented in the spiking activity of neuronal ensembles. These findings uncovered innate and learned coding properties and their potential refinement during sleep that support flexible integration and application of memories for better future adaptation.
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Affiliation(s)
- Kaori Takehara-Nishiuchi
- Department of Psychology, University of Toronto, Toronto, M5S 3G3, Canada; Department of Cell and Systems Biology, University of Toronto, Toronto, M5S 3G3, Canada; Neuroscience Program, University of Toronto, Toronto, M5S 3G3, Canada.
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33
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Dastgheib M, Kulanayagam A, Dringenberg HC. Is the role of sleep in memory consolidation overrated? Neurosci Biobehav Rev 2022; 140:104799. [PMID: 35905801 DOI: 10.1016/j.neubiorev.2022.104799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 06/13/2022] [Accepted: 07/25/2022] [Indexed: 11/18/2022]
Abstract
Substantial empirical evidence suggests that sleep benefits the consolidation and reorganization of learned information. Consequently, the concept of "sleep-dependent memory consolidation" is now widely accepted by the scientific community, in addition to influencing public perceptions regarding the functions of sleep. There are, however, numerous studies that have presented findings inconsistent with the sleep-memory hypothesis. Here, we challenge the notion of "sleep-dependency" by summarizing evidence for effective memory consolidation independent of sleep. Plasticity mechanisms thought to mediate or facilitate consolidation during sleep (e.g., neuronal replay, reactivation, slow oscillations, neurochemical milieu) also operate during non-sleep states, particularly quiet wakefulness, thus allowing for the stabilization of new memories. We propose that it is not sleep per se, but the engagement of plasticity mechanisms, active during both sleep and (at least some) waking states, that constitutes the critical factor determining memory formation. Thus, rather than playing a "critical" role, sleep falls along a continuum of behavioral states that vary in their effectiveness to support memory consolidation at the neural and behavioral level.
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Affiliation(s)
| | | | - Hans C Dringenberg
- Department of Psychology, Queen's University, Kingston, Ontario, Canada.
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34
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Abstract
When navigating through space, we must maintain a representation of our position in real time; when recalling a past episode, a memory can come back in a flash. Interestingly, the brain's spatial representation system, including the hippocampus, supports these two distinct timescale functions. How are neural representations of space used in the service of both real-world navigation and internal mnemonic processes? Recent progress has identified sequences of hippocampal place cells, evolving at multiple timescales in accordance with either navigational behaviors or internal oscillations, that underlie these functions. We review experimental findings on experience-dependent modulation of these sequential representations and consider how they link real-world navigation to time-compressed memories. We further discuss recent work suggesting the prevalence of these sequences beyond hippocampus and propose that these multiple-timescale mechanisms may represent a general algorithm for organizing cell assemblies, potentially unifying the dual roles of the spatial representation system in memory and navigation.
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Affiliation(s)
- Wenbo Tang
- Graduate Program in Neuroscience, Brandeis University, Waltham, Massachusetts, USA;
| | - Shantanu P Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts, USA;
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35
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Nazhestkin I, Svarnik O. Different Approximation Methods for Calculation of Integrated Information Coefficient in the Brain during Instrumental Learning. Brain Sci 2022; 12:596. [PMID: 35624983 PMCID: PMC9138974 DOI: 10.3390/brainsci12050596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 04/22/2022] [Accepted: 04/30/2022] [Indexed: 02/04/2023] Open
Abstract
The amount of integrated information, Φ, proposed in an integrated information theory (IIT) is useful to describe the degree of brain adaptation to the environment. However, its computation cannot be precisely performed for a reasonable time for time-series spike data collected from a large count of neurons.. Therefore, Φ was only used to describe averaged activity of a big group of neurons, and the behavior of small non-brain systems. In this study, we reported on ways for fast and precise Φ calculation using different approximation methods for Φ calculation in neural spike data, and checked the capability of Φ to describe a degree of adaptation in brain neural networks. We show that during instrumental learning sessions, all applied approximation methods reflect temporal trends of Φ in the rat hippocampus. The value of Φ is positively correlated with the number of successful acts performed by a rat. We also show that only one subgroup of neurons modulates their Φ during learning. The obtained results pave the way for application of Φ to investigate plasticity in the brain during the acquisition of new tasks.
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Affiliation(s)
- Ivan Nazhestkin
- Moscow Institute of Physics and Technology, 1 “A” Kerchenskaya St., 117303 Moscow, Russia;
| | - Olga Svarnik
- Moscow Institute of Physics and Technology, 1 “A” Kerchenskaya St., 117303 Moscow, Russia;
- Institute of Psychology of Russian Academy of Sciences, 13 Yaroslavskaya St., 129366 Moscow, Russia
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36
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Nazhestkin IA, Svarnik OE. Variations in the Value of Integrated Information Theory Estimated from Hippocampal Neural Activity During Acquisition of Operant Behavior in Rats. Biophysics (Nagoya-shi) 2022. [DOI: 10.1134/s0006350922010110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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37
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Nyberg N, Duvelle É, Barry C, Spiers HJ. Spatial goal coding in the hippocampal formation. Neuron 2022; 110:394-422. [PMID: 35032426 DOI: 10.1016/j.neuron.2021.12.012] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 10/18/2021] [Accepted: 12/08/2021] [Indexed: 12/22/2022]
Abstract
The mammalian hippocampal formation contains several distinct populations of neurons involved in representing self-position and orientation. These neurons, which include place, grid, head direction, and boundary-vector cells, are thought to collectively instantiate cognitive maps supporting flexible navigation. However, to flexibly navigate, it is necessary to also maintain internal representations of goal locations, such that goal-directed routes can be planned and executed. Although it has remained unclear how the mammalian brain represents goal locations, multiple neural candidates have recently been uncovered during different phases of navigation. For example, during planning, sequential activation of spatial cells may enable simulation of future routes toward the goal. During travel, modulation of spatial cells by the prospective route, or by distance and direction to the goal, may allow maintenance of route and goal-location information, supporting navigation on an ongoing basis. As the goal is approached, an increased activation of spatial cells may enable the goal location to become distinctly represented within cognitive maps, aiding goal localization. Lastly, after arrival at the goal, sequential activation of spatial cells may represent the just-taken route, enabling route learning and evaluation. Here, we review and synthesize these and other evidence for goal coding in mammalian brains, relate the experimental findings to predictions from computational models, and discuss outstanding questions and future challenges.
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Affiliation(s)
- Nils Nyberg
- Institute of Behavioural Neuroscience, Department of Experimental Psychology, University College London, London, UK.
| | - Éléonore Duvelle
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA
| | - Caswell Barry
- Department of Cell and Developmental Biology, University College London, London, UK
| | - Hugo J Spiers
- Institute of Behavioural Neuroscience, Department of Experimental Psychology, University College London, London, UK.
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38
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Symanski CA, Bladon JH, Kullberg ET, Miller P, Jadhav SP. Rhythmic coordination and ensemble dynamics in the hippocampal-prefrontal network during odor-place associative memory and decision making. eLife 2022; 11:79545. [PMID: 36480255 PMCID: PMC9799972 DOI: 10.7554/elife.79545] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2022] [Accepted: 12/08/2022] [Indexed: 12/14/2022] Open
Abstract
Memory-guided decision making involves long-range coordination across sensory and cognitive brain networks, with key roles for the hippocampus and prefrontal cortex (PFC). In order to investigate the mechanisms of such coordination, we monitored activity in hippocampus (CA1), PFC, and olfactory bulb (OB) in rats performing an odor-place associative memory guided decision task on a T-maze. During odor sampling, the beta (20-30 Hz) and respiratory (7-8 Hz) rhythms (RR) were prominent across the three regions, with beta and RR coherence between all pairs of regions enhanced during the odor-cued decision making period. Beta phase modulation of phase-locked CA1 and PFC neurons during this period was linked to accurate decisions, with a key role of CA1 interneurons in temporal coordination. Single neurons and ensembles in both CA1 and PFC encoded and predicted animals' upcoming choices, with different cell ensembles engaged during decision-making and decision execution on the maze. Our findings indicate that rhythmic coordination within the hippocampal-prefrontal-olfactory bulb network supports utilization of odor cues for memory-guided decision making.
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Affiliation(s)
| | - John H Bladon
- Neuroscience Program, Brandeis UniversityWalthamUnited States,Department of Psychology, Brandeis UniversityWalthamUnited States
| | - Emi T Kullberg
- Neuroscience Program, Brandeis UniversityWalthamUnited States,Department of Psychology, Brandeis UniversityWalthamUnited States
| | - Paul Miller
- Neuroscience Program, Brandeis UniversityWalthamUnited States,Volen National Center for Complex Systems, Brandeis UniversityWalthamUnited States
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39
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Klee JL, Souza BC, Battaglia FP. Learning differentially shapes prefrontal and hippocampal activity during classical conditioning. eLife 2021; 10:e65456. [PMID: 34665131 PMCID: PMC8545395 DOI: 10.7554/elife.65456] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 10/10/2021] [Indexed: 11/25/2022] Open
Abstract
The ability to use sensory cues to inform goal-directed actions is a critical component of behavior. To study how sounds guide anticipatory licking during classical conditioning, we employed high-density electrophysiological recordings from the hippocampal CA1 area and the prefrontal cortex (PFC) in mice. CA1 and PFC neurons undergo distinct learning-dependent changes at the single-cell level and maintain representations of cue identity at the population level. In addition, reactivation of task-related neuronal assemblies during hippocampal awake Sharp-Wave Ripples (aSWRs) changed within individual sessions in CA1 and over the course of multiple sessions in PFC. Despite both areas being highly engaged and synchronized during the task, we found no evidence for coordinated single cell or assembly activity during conditioning trials or aSWR. Taken together, our findings support the notion that persistent firing and reactivation of task-related neural activity patterns in CA1 and PFC support learning during classical conditioning.
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Affiliation(s)
- Jan L Klee
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
| | - Bryan C Souza
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
| | - Francesco P Battaglia
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
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40
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Sarmashghi M, Jadhav SP, Eden U. Efficient spline regression for neural spiking data. PLoS One 2021; 16:e0258321. [PMID: 34644315 PMCID: PMC8513896 DOI: 10.1371/journal.pone.0258321] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 09/27/2021] [Indexed: 11/29/2022] Open
Abstract
Point process generalized linear models (GLMs) provide a powerful tool for characterizing the coding properties of neural populations. Spline basis functions are often used in point process GLMs, when the relationship between the spiking and driving signals are nonlinear, but common choices for the structure of these spline bases often lead to loss of statistical power and numerical instability when the signals that influence spiking are bounded above or below. In particular, history dependent spike train models often suffer these issues at times immediately following a previous spike. This can make inferences related to refractoriness and bursting activity more challenging. Here, we propose a modified set of spline basis functions that assumes a flat derivative at the endpoints and show that this limits the uncertainty and numerical issues associated with cardinal splines. We illustrate the application of this modified basis to the problem of simultaneously estimating the place field and history dependent properties of a set of neurons from the CA1 region of rat hippocampus, and compare it with the other commonly used basis functions. We have made code available in MATLAB to implement spike train regression using these modified basis functions.
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Affiliation(s)
- Mehrad Sarmashghi
- Systems Engineering/Systems Engineering/Boston University, Boston, Massachusetts, United States of America
| | - Shantanu P. Jadhav
- Psychology/Neuroscience/Brandeis University, Waltham, Massachusetts, United States of America
| | - Uri Eden
- Mathematics and Statistics/Mathematics and Statistics/Boston University, Boston, Massachusetts, United States of America
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41
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Gillespie AK, Astudillo Maya DA, Denovellis EL, Liu DF, Kastner DB, Coulter ME, Roumis DK, Eden UT, Frank LM. Hippocampal replay reflects specific past experiences rather than a plan for subsequent choice. Neuron 2021; 109:3149-3163.e6. [PMID: 34450026 DOI: 10.1016/j.neuron.2021.07.029] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Revised: 06/21/2021] [Accepted: 07/29/2021] [Indexed: 01/06/2023]
Abstract
Executing memory-guided behavior requires storage of information about experience and later recall of that information to inform choices. Awake hippocampal replay, when hippocampal neural ensembles briefly reactivate a representation related to prior experience, has been proposed to critically contribute to these memory-related processes. However, it remains unclear whether awake replay contributes to memory function by promoting the storage of past experiences, facilitating planning based on evaluation of those experiences, or both. We designed a dynamic spatial task that promotes replay before a memory-based choice and assessed how the content of replay related to past and future behavior. We found that replay content was decoupled from subsequent choice and instead was enriched for representations of previously rewarded locations and places that had not been visited recently, indicating a role in memory storage rather than in directly guiding subsequent behavior.
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Affiliation(s)
- Anna K Gillespie
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA.
| | - Daniela A Astudillo Maya
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA
| | - Eric L Denovellis
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA
| | - Daniel F Liu
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA
| | - David B Kastner
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA
| | - Michael E Coulter
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA
| | - Demetris K Roumis
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA
| | - Uri T Eden
- Department of Mathematics and Statistics, Boston University, Boston, MA 02215, USA
| | - Loren M Frank
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, CA 94158, USA; Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA.
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42
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Denovellis EL, Gillespie AK, Coulter ME, Sosa M, Chung JE, Eden UT, Frank LM. Hippocampal replay of experience at real-world speeds. eLife 2021; 10:64505. [PMID: 34570699 PMCID: PMC8476125 DOI: 10.7554/elife.64505] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 09/08/2021] [Indexed: 01/12/2023] Open
Abstract
Representations related to past experiences play a critical role in memory and decision-making processes. The rat hippocampus expresses these types of representations during sharp-wave ripple (SWR) events, and previous work identified a minority of SWRs that contain ‘replay’ of spatial trajectories at ∼20x the movement speed of the animal. Efforts to understand replay typically make multiple assumptions about which events to examine and what sorts of representations constitute replay. We therefore lack a clear understanding of both the prevalence and the range of representational dynamics associated with replay. Here, we develop a state space model that uses a combination of movement dynamics of different speeds to capture the spatial content and time evolution of replay during SWRs. Using this model, we find that the large majority of replay events contain spatially coherent, interpretable content. Furthermore, many events progress at real-world, rather than accelerated, movement speeds, consistent with actual experiences.
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Affiliation(s)
- Eric L Denovellis
- Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, United States.,Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, United States.,Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, United States
| | - Anna K Gillespie
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, United States.,Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, United States
| | - Michael E Coulter
- Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, United States.,Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, United States
| | - Marielena Sosa
- Department of Neurobiology, Stanford University School of Medicine, Stanford, United States
| | - Jason E Chung
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, United States
| | - Uri T Eden
- Department of Mathematics and Statistics, Boston University, Boston, United States
| | - Loren M Frank
- Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, United States.,Departments of Physiology and Psychiatry, University of California, San Francisco, San Francisco, United States.,Kavli Institute for Fundamental Neuroscience, University of California, San Francisco, San Francisco, United States
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43
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Wittkuhn L, Chien S, Hall-McMaster S, Schuck NW. Replay in minds and machines. Neurosci Biobehav Rev 2021; 129:367-388. [PMID: 34371078 DOI: 10.1016/j.neubiorev.2021.08.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 07/19/2021] [Accepted: 08/01/2021] [Indexed: 11/19/2022]
Abstract
Experience-related brain activity patterns reactivate during sleep, wakeful rest, and brief pauses from active behavior. In parallel, machine learning research has found that experience replay can lead to substantial performance improvements in artificial agents. Together, these lines of research suggest replay has a variety of computational benefits for decision-making and learning. Here, we provide an overview of putative computational functions of replay as suggested by machine learning and neuroscientific research. We show that replay can lead to faster learning, less forgetting, reorganization or augmentation of experiences, and support planning and generalization. In addition, we highlight the benefits of reactivating abstracted internal representations rather than veridical memories, and discuss how replay could provide a mechanism to build internal representations that improve learning and decision-making.
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Affiliation(s)
- Lennart Wittkuhn
- Max Planck Research Group NeuroCode, Max Planck Institute for Human Development, Lentzeallee 94, D-14195 Berlin, Germany; Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Lentzeallee 94, D-14195 Berlin, Germany.
| | - Samson Chien
- Max Planck Research Group NeuroCode, Max Planck Institute for Human Development, Lentzeallee 94, D-14195 Berlin, Germany; Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Lentzeallee 94, D-14195 Berlin, Germany
| | - Sam Hall-McMaster
- Max Planck Research Group NeuroCode, Max Planck Institute for Human Development, Lentzeallee 94, D-14195 Berlin, Germany; Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Lentzeallee 94, D-14195 Berlin, Germany
| | - Nicolas W Schuck
- Max Planck Research Group NeuroCode, Max Planck Institute for Human Development, Lentzeallee 94, D-14195 Berlin, Germany; Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Lentzeallee 94, D-14195 Berlin, Germany.
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44
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Berners-Lee A, Wu X, Foster DJ. Prefrontal Cortical Neurons Are Selective for Non-Local Hippocampal Representations during Replay and Behavior. J Neurosci 2021; 41:5894-5908. [PMID: 34035138 PMCID: PMC8265798 DOI: 10.1523/jneurosci.1158-20.2021] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 04/24/2021] [Accepted: 04/26/2021] [Indexed: 11/21/2022] Open
Abstract
Diverse functions such as decision-making and memory consolidation may depend on communication between neurons in the hippocampus (HP) and prefrontal cortex (PFC). HP replay is a candidate mechanism to facilitate this communication, however details remain largely unknown because of the technical challenges of recording sufficient numbers of HP neurons for replay while also recording PFC neurons. Here, we implanted male rats with 40-tetrode drives, split between HP and PFC, during learning of a Y-maze spatial memory task. Surprisingly, we found that in contrast to their non-selectivity for maze arm during movement, a portion of PFC neurons were highly selective for HP replay of different arms. Moreover, PFC neurons' selectivity to HP non-local arm representation during running tended to match their replay arm selectivity and was predictive of future choice. Thus, PFC activity that is tuned to HP activity is best explained by non-local HP position representations rather than HP representation of actual position, providing a new potential mechanism of HP-PFC coordination during HP replay.SIGNIFICANCE STATEMENT The hippocampus (HP) is implicated in spatial learning while the prefrontal cortex (PFC) is implicated in decision-making. The question of how the two areas interact has been of great interest. A specific activity type in HP called replay is particularly interesting because it resembles internal exploration of non-local experiences, but is technically challenging to study, requiring recordings from large numbers of HP neurons simultaneously. Here, we combined replay recordings from HP with prefrontal recordings, to reveal a surprising degree of selectivity for replay, and a pattern of coordination that supports some conceptions of hippocampocortical interaction and challenges others.
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Affiliation(s)
- Alice Berners-Lee
- Helen Wills Neuroscience Institute and Department of Psychology, University of California, Berkeley, California 94720
- Solomon H Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
| | - Xiaojing Wu
- Solomon H Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
| | - David J Foster
- Helen Wills Neuroscience Institute and Department of Psychology, University of California, Berkeley, California 94720
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45
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Aperiodic sleep networks promote memory consolidation. Trends Cogn Sci 2021; 25:648-659. [PMID: 34127388 DOI: 10.1016/j.tics.2021.04.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 04/17/2021] [Accepted: 04/20/2021] [Indexed: 11/22/2022]
Abstract
Hierarchical synchronization of sleep oscillations establishes communication pathways to support memory reactivation, transfer, and consolidation. From an information-theoretical perspective, oscillations constitute highly structured network states that provide limited information-coding capacity. Recent findings indicate that sleep oscillations occur in transient bursts that are interleaved with aperiodic network states, which were previously considered to be random noise. We argue that aperiodic activity exhibits unique and variable spatiotemporal patterns, providing an ideal information-rich neurophysiological substrate for imprinting new mnemonic patterns onto existing circuits. We discuss novel avenues in conceptualizing and quantifying aperiodic network states during sleep to further understand their relevance and interplay with sleep oscillations in support of memory consolidation.
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46
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Schmidt B, Redish AD. Disrupting the medial prefrontal cortex with designer receptors exclusively activated by designer drug alters hippocampal sharp-wave ripples and their associated cognitive processes. Hippocampus 2021; 31:1051-1067. [PMID: 34107138 DOI: 10.1002/hipo.23367] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 05/10/2021] [Accepted: 05/19/2021] [Indexed: 11/09/2022]
Abstract
The hippocampus and medial prefrontal cortex (mPFC) interact during a myriad of cognitive processes including decision-making and long-term memory consolidation. Exactly how the mPFC and hippocampus interact during goal-directed decision-making remains to be fully elucidated. During periods of rest, bursts of high-frequency oscillations, termed sharp-wave ripple (SWR), appear in the local field potential. Impairing SWRs on the maze or during post-learning rest can interfere with memory-guided decision-making and memory consolidation. We hypothesize that the hippocampus and mPFC bidirectionally interact during SWRs to support memory consolidation and decision-making. Rats were trained on the neuroeconomic spatial decision-making task, Restaurant Row, to make serial stay-skip decisions where the amount of effort (delay to reward) varied upon entry to each restaurant. Hippocampal cells and SWRs were recorded in rats with the mPFC transduced with inhibitory DREADDs. We found that disrupting the mPFC impaired consolidating SWRs in the hippocampus. Hippocampal SWR rates depended on the internalized value of the reward (derived from individual flavor preferences), a parameter important in decision-making, and disrupting the mPFC changed this relationship. Additionally, we found a dissociation between SWRs that occurred while rats were on the maze dependent upon whether those SWRs occurred while the rat was anticipating food reward or during post-reward consumption.
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Affiliation(s)
- Brandy Schmidt
- Department of Neuroscience, University of Minnesota, Minneapolis, Minnesota, USA
| | - A David Redish
- Department of Neuroscience, University of Minnesota, Minneapolis, Minnesota, USA
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47
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Nishimura Y, Ikegaya Y, Sasaki T. Concurrent recordings of hippocampal neuronal spikes and prefrontal synaptic inputs from an awake rat. STAR Protoc 2021; 2:100572. [PMID: 34151297 PMCID: PMC8192860 DOI: 10.1016/j.xpro.2021.100572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
A major challenge in neuroscience is linking synapses to cognition and behavior. Here, we developed an experimental technique to concurrently conduct a whole-cell recording of a prefrontal neuron and a multiunit recording of hippocampal neurons from an awake rat. This protocol includes surgical steps to establish a cranial window and 3D printer-based devices to hold the rat. The data sets allow us to directly compare how subthreshold synaptic transmission is associated with suprathreshold spike patterns of neuronal ensembles. For complete details on the use and execution of this protocol, please refer to Nishimura et al. (2021). A surgical craniotomy is performed on the prefrontal cortex A microdrive is implanted on the hippocampus A patch-clamp recording is obtained from a prefrontal neuron Protocol allows simultaneous multiunit and whole-cell recordings
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Affiliation(s)
- Yuya Nishimura
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yuji Ikegaya
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.,Center for Information and Neural Networks, National Institute of Information and Communications Technology, 1-4 Yamadaoka, Suita City, Osaka 565-0871, Japan.,Institute for AI and Beyond, The University of Tokyo, Tokyo 113-0033, Japan
| | - Takuya Sasaki
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.,Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
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48
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Liu X, Ren C, Lu Y, Liu Y, Kim JH, Leutgeb S, Komiyama T, Kuzum D. Multimodal neural recordings with Neuro-FITM uncover diverse patterns of cortical-hippocampal interactions. Nat Neurosci 2021; 24:886-896. [PMID: 33875893 PMCID: PMC8627685 DOI: 10.1038/s41593-021-00841-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 03/15/2021] [Indexed: 12/19/2022]
Abstract
Many cognitive processes require communication between the neocortex and the hippocampus. However, coordination between large-scale cortical dynamics and hippocampal activity is not well understood, partially due to the difficulty in simultaneously recording from those regions. In the present study, we developed a flexible, insertable and transparent microelectrode array (Neuro-FITM) that enables investigation of cortical-hippocampal coordinations during hippocampal sharp-wave ripples (SWRs). Flexibility and transparency of Neuro-FITM allow simultaneous recordings of local field potentials and neural spiking from the hippocampus during wide-field calcium imaging. These experiments revealed that diverse cortical activity patterns accompanied SWRs and, in most cases, cortical activation preceded hippocampal SWRs. We demonstrated that, during SWRs, different hippocampal neural population activity was associated with distinct cortical activity patterns. These results suggest that hippocampus and large-scale cortical activity interact in a selective and diverse manner during SWRs underlying various cognitive functions. Our technology can be broadly applied to comprehensive investigations of interactions between the cortex and other subcortical structures.
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Affiliation(s)
- Xin Liu
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USA
| | - Chi Ren
- Neurobiology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA
| | - Yichen Lu
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USA
| | - Yixiu Liu
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USA
| | - Jeong-Hoon Kim
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USA
| | - Stefan Leutgeb
- Neurobiology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA
- Kavli Institute for Brain and Mind, University of California San Diego, La Jolla, CA, USA
| | - Takaki Komiyama
- Neurobiology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
- Center for Neural Circuits and Behavior, University of California San Diego, La Jolla, CA, USA.
- Department of Neurosciences, University of California San Diego, La Jolla, CA, USA.
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA.
| | - Duygu Kuzum
- Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USA.
- Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA.
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49
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Nishimura Y, Ikegaya Y, Sasaki T. Prefrontal synaptic activation during hippocampal memory reactivation. Cell Rep 2021; 34:108885. [PMID: 33761365 DOI: 10.1016/j.celrep.2021.108885] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 12/07/2020] [Accepted: 02/25/2021] [Indexed: 12/22/2022] Open
Abstract
Cooperative reactivation of hippocampal and prefrontal neurons is considered crucial for mnemonic processes. To directly record synaptic substances supporting the interregional interactions, we develop concurrent spike recordings of hippocampal neuronal ensembles and whole-cell patch-clamp recordings of medial prefrontal neurons in awake rats. We find that medial prefrontal neurons depolarize when hippocampal neurons synchronize. The depolarization in medial prefrontal neurons is larger when hippocampal place cells that encoded overlapping place fields and place cells that encoded a novel environment are synchronously reactivated. Our results suggest a functional circuit-synapse association that enables prefrontal neurons to read out specific memory traces from the hippocampus.
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Affiliation(s)
- Yuya Nishimura
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yuji Ikegaya
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Center for Information and Neural Networks, National Institute of Information and Communications Technology, 1-4 Yamadaoka, Suita City, Osaka 565-0871, Japan; Institute for AI and Beyond, The University of Tokyo, Tokyo 113-0033, Japan
| | - Takuya Sasaki
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan.
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50
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Using EEG microstates to examine post-encoding quiet rest and subsequent word-pair memory. Neurobiol Learn Mem 2021; 181:107424. [PMID: 33766782 DOI: 10.1016/j.nlm.2021.107424] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 02/15/2021] [Accepted: 03/17/2021] [Indexed: 02/07/2023]
Abstract
Evidence suggests that the brain preferentially consolidates memories during "offline" periods, in which an individual is not performing a task and their attention is otherwise undirected, including spans of quiet, resting wakefulness. Moreover, research has demonstrated that factors such as the initial encoding strength of information influence which memories receive the greatest benefit. Recent studies have begun to investigate these periods of post-learning quiet rest using EEG microstate analysis to observe the electrical dynamics of the brain during these stretches of memory consolidation, specifically finding an increase in the amount of the canonical microstate D during a post-encoding rest period. Here, we implement an exploratory analysis to probe the activity of EEG microstates during a post-encoding session of quiet rest in order to scrutinize the impact of learning on microstate dynamics and to further understand the role these microstates play in the consolidation of memories. We examined 54 subjects (41 female) as they completed a word-pair memory task designed to use repetition to vary the initial encoding strength of the word-pair memories. In this study, we were able to replicate previous research in which there was a significant increase (p < .05) in the amount of microstate D (often associated with the dorsal attention network) during post-encoding rest. This change was accompanied by a significant decrease (p < .05) in the amount of microstate C (often associated with the default mode network). We also found preliminary evidence indicating a positive relationship between the amount of microstate D and improved memory for weakly encoded memories, which merits further exploration.
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