Nitrate controls methyl mercury production in a streambed bioreactor

Global survey of hgcA-carrying genomes in marine and freshwater sediments: Insights into mercury methylation processes

Mercury (Hg) methylation is a microbially mediated process that produces methylmercury (MeHg), a bioaccumulative neurotoxin. A highly conserved gene pair, hgcAB, is required for Hg methylation, which provides a basis for identifying Hg methylators and evaluating their genomic composition. In this study, we conducted a large-scale omics analysis in which 281 metagenomic freshwater and marine sediment samples from 46 geographic locations across the globe were queried. Specific objectives were to examine the prevalence of Hg methylators, to identify horizontal gene transfer (HGT) events involving hgcAB within Hg methylator communities, and to identify associations between hgcAB and microbial biochemical functions/genes. Hg methylators from the phyla Desulfobacterota and Bacteroidota were dominant in both freshwater and marine sediments while Firmicutes and methanogens belonging to Euryarchaeota were identified only in freshwater sediments. Novel Hg methylators were found in the Phycisphaerae and Planctomycetia classes within the phylum Planctomycetota, including potential hgcA-carrying anammox metagenome-assembled genomes (MAGs) from Candidatus Brocadiia. HGT of hgcA and hgcB were identified in both freshwater and marine methylator communities. Spearman's correlation analysis of methylator genomes suggested that in addition to sulfide, thiosulfate, sulfite, and ammonia may be important parameters for Hg methylation processes in sediments. Overall, our results indicated that the biochemical drivers of Hg methylation vary between marine and freshwater sites, lending insight into the influence of environmental perturbances, such as a changing climate, on Hg methylation processes.

Watershed characteristics and chemical properties govern methyl mercury concentrations within headwater streams of boreal forests in Ontario, Canada

Methyl mercury (MeHg) concentrations in boreal headwater streams are influenced by complex natural processes and disturbances such as forestry management. Understanding drivers of MeHg within boreal streams in Ontario, Canada, is of particular interest as there are legacy MeHg concerns. However, models accounting for the complexity of underlying processes have not yet been developed. We assessed how catchment characteristics and stream water chemistry influence MeHg concentrations within 19 watersheds of the Dryden - Wabigoon Forest in Ontario, Canada, using a structural equation modelling (SEM) approach. Despite the study area encompassing a large variation of boreal forest watersheds in the Canadian Shield, our SEM had substantial explanatory power across the region (χ251 = 45.37, p-value = 0.70, R2 = 0.75). Nitrate concentrations (p-value <0.001), water temperature (p-value = 0.002), and the latent watershed characteristic (p-value <0.001) had a positive influence on MeHg concentrations once variable interactions were accounted. Due to the inherent strengths of applying an SEM approach, we describe two plausible pathways driving MeHg concentrations: 1) indirect effect of forest-derived nutrients increases in-situ MeHg production in Dryden - Wabigoon Forest streams, and 2) direct supply of MeHg from inundated soils following consistent precipitation and inundation events (i.e., fill, sit, and spill).

The divergent effects of nitrate and ammonium application on mercury methylation, demethylation, and reduction in flooded paddy slurries

The production of methylmercury (MeHg) in flooded paddy fields determines its accumulation in rice grains; this, in turn, results in MeHg exposure risks for not only rice-eating humans but also wildlife. Nitrogen (N) fertilizers have been widely applied in rice cultivation fields to supply essential nutrients. However, the effects of N fertilizer addition on mercury (Hg) transformations are not unclear. This limits our understanding of MeHg formation in rice paddy ecosystems. In this study, we spiked three Hg tracers (200HgII, Me198Hg, and 202Hg0) in paddy slurries fertilized with urea, ammonium, and nitrate. The influences of N fertilization on Hg methylation, demethylation, and reduction and the underlying mechanisms were elucidated. The results revealed that dissimilatory nitrate reduction was the dominant process in the incubated paddy slurries. Nitrate addition inhibited HgII reduction, HgII methylation, and MeHg demethylation. Competition between nitrates and other electron acceptors (e.g., HgII, sulfate, or carbon dioxide) under dark conditions was the mechanism underlying nitrate-regulated Hg transformation. Ammonium and urea additions promoted HgII reduction, and anaerobic ammonium oxidation coupled with HgII reduction (Hgammox) was likely the reason. This work highlighted that nitrate addition not only inhibited HgII methylation but also reduced the demethylation of MeHg and therefore may generate more accumulation of MeHg in the incubated paddy slurries. Findings from this study link the biogeochemical cycling of N and Hg and provide crucial knowledge for assessing Hg risks in intermittently flooded wetland ecosystems.

Denitrifying Woodchip Bioreactors: A Microbial Solution for Nitrate in Agricultural Wastewater-A Review

Nitrate (NO3-) is highly water-soluble and considered to be the main nitrogen pollutants leached from agricultural soils. Its presence in aquatic ecosystems is reported to cause various environmental and public health problems. Bioreactors containing microbes capable of transforming NO3- have been proposed as a means to remediate contaminated waters. Woodchip bioreactors (WBRs) are continuous flow, reactor systems located below or above ground. Below ground systems are comprised of a trench filled with woodchips, or other support matrices. The nitrate present in agricultural drainage wastewater passing through the bioreactor is converted to harmless dinitrogen gas (N2) via the action of several bacteria species. The WBR has been suggested as one of the most cost-effective NO3--removing strategy among several edge-of-field practices, and has been shown to successfully remove NO3- in several field studies. NO3- removal in the WBR primarily occurs via the activity of denitrifying microorganisms via enzymatic reactions sequentially reducing NO3- to N2. While previous woodchip bioreactor studies have focused extensively on its engineering and hydrological aspects, relatively fewer studies have dealt with the microorganisms playing key roles in the technology. This review discusses NO3- pollution cases originating from intensive farming practices and N-cycling microbial metabolisms which is one biological solution to remove NO3- from agricultural wastewater. Moreover, here we review the current knowledge on the physicochemical and operational factors affecting microbial metabolisms resulting in removal of NO3- in WBR, and perspectives to enhance WBR performance in the future.

Extreme low-flow conditions in a dual-chamber denitrification bioreactor contribute to pollution swapping with low landscape-scale impact

Denitrification bioreactors are an effective edge-of-field conservation practice for nitrate (NO₃) reduction from subsurface drainage. However, these systems may produce other pollutants and greenhouse gases during NO₃ removal. Here a dual-chamber woodchip bioreactor system experiencing extreme low-flow conditions was monitored for its spatiotemporal NO₃ and total organic carbon dynamics in the drainage water. Near complete removal of NO₃ was observed in both bioreactor chambers in the first two years of monitoring (2019-2020) and in the third year of monitoring in chamber A, with significant (p < 0.01) reduction of the NO₃-N each year in both chambers with 8.6-11.4 mg NO₃-N L^-1 removed on average. Based on the NO₃ removal observed, spatial monitoring of sulfate (SO₄), dissolved methane (CH₄), and dissolved nitrous oxide (N₂O) gases was added in the third year of monitoring (2021). In 2021, chambers A and B had median hydraulic residence times (HRTs) of 64 h and 39 h, respectively, due to varying elevations of the chambers, with drought conditions making the differences more pronounced. In 2021, significant production of dissolved CH₄ was observed at rates of 0.54 g CH₄-C m^-3 d^-1 and 0.07 g CH₄-C m^-3 d^-1 in chambers A and B, respectively. In chamber A, significant removal (p < 0.01) of SO₄ (0.23 g SO₄ m^-3 d^-1) and dissolved N₂O (0.21 mg N₂O-N m^-2 d^-1) were observed, whereas chamber B produced N₂O (0.36 mg N₂O-N m^-2 d^-1). Considering the carbon dioxide equivalents (CO₂e) on an annual basis, chamber A had loads (~12,000 kg CO₂e ha^-1 y^-1) greater than comparable poorly drained agricultural soils; however, the landscape-scale impact was small (<1 % change in CO₂e) when expressed over the drainage area treated by the bioreactor. Under low-flow conditions, pollution swapping in woodchip bioreactors can be reduced at HRTs <50 h and NO₃ concentrations >2 mg N L^-1.

Amending woodchip bioreactors with corncobs reduces nitrogen removal cost

Woodchip denitrification bioreactors are an effective agricultural practice to reduce nitrogen (N) export from subsurface drainage via the conversion of nitrate (NO₃^-) to nitrogen gas (N₂), but there are challenges associated with limited woodchip supplies and increasing prices. Previous lab studies indicate that corncobs could be a promising woodchip alternative from the perspectives of N removal rate and cost. This field study aimed to provide early performance and cost assessment of denitrification bioreactors with two woodchip-corncob treatments. The objectives were to i) compare N removal rates of bioreactors with different carbon and hydraulic retention time (HRT) treatments, ii) compare bioreactor N removal costs, and iii) conduct sensitivity analysis on full-scale bioreactors (FBR) N removal costs with varying corncob lifespans and prices. Nine replicated field pilot-scale bioreactors (PBRs) using three carbon treatments and three HRTs were assessed for N removal efficiency. The carbon treatments were woodchip-only (WC100), 25% (by vol.) corncobs + 75% woodchips media (CC25) in series, and 75% corncobs + 25% woodchips (CC75) in series set at HRTs of 2, 8, and 16 h. N concentrations were monitored at each PBR inlet and outlet, and the PBR N removal efficiencies were used to estimate FBR N removal rates and costs. At respective HRTs, the estimated N removal rates of CC75 were 1.6- to 10.1-fold higher than WC100, but CC25 exhibited 0.9-fold lower (at 8-hr HRT) to 2.8-fold higher than WC100. A 15-yr cost assessment indicated CC75 ($10.56 to $13.89 kg^-1 N) was the most cost-efficient treatment, followed by WC100 ($13.30 to $88.11 kg^-1 N) and CC25 ($22.41 to $60.13 kg^-1 N). This assessment showed CC75 as a promising alternative to WC100 in terms of N removal rate and cost, but CC25 did not provide sufficient N removal rate increase for it to be a cost-efficient option. Nonetheless, using corncobs as a bioreactor medium is a relatively new approach, and we encourage more field studies to explore the long-term opportunities and challenges.

Paired denitrifying bioreactors with wide orientation for increased drainage flow capacity

Denitrifying bioreactors are a conservation drainage practice for reducing nitrate loads in subsurface agricultural drainage. Bioreactor hydraulic capacity is limited by cross-sectional area perpendicular to flow through the woodchip bed, with excess bypass flow untreated. Paired bioreactors with wide orientations were built in 2017 in Illinois, USA, to treat drainage from a relatively large 29 ha field. The paired design consisted of: a larger, Main bioreactor (LWD: 6.1 × 18.3 × 0.9 m) for treating base flow, and 2) a smaller, Booster bioreactor (7.8 × 13.1 × 0.9 m) receiving bypass flow from the Main bioreactor during periods of high flow. Over three years of monitoring, the paired bioreactor captured 84-92% of the annual drainage discharge which demonstrated an expanded cross-sectional area could improve bioreactor flow capture, even for a large drainage area. However, the paired bioreactors removed 6-28% of the annual N load leaving the field (1.8-5.6 kg N ha^-1 removed; 52-161 kg N), which was not a notable improvement compared to bioreactors treating smaller drainage areas. The design operated as intended at low annual flow-weighted hydraulic retention times (HRTs) of usually ≤2 h, but these short HRTs ultimately limited bioreactor nitrate removal efficiency. Daily HRTs of <2 h often resulted in nitrate flushing. The Main bioreactor had higher hydraulic loading as intended and was responsible for the majority of flow captured in each year although not always the most nitrate mass removal. The Booster bioreactor provided better nitrate removal than the Main at HRTs of 3.0-11.9 h, possibly due to its drying cycles which may have liberated more available carbon. This new design approach tested at the field-scale illustrated tradeoffs between greater flow capacity (via increased bioreactor width) and longer HRT (via increased length), given a consistent bioreactor surface footprint.

Evaluation of pollution swapping phenomena from a woodchip denitrification wall targetting removal of nitrate in a shallow gravel aquifer

Woodchip denitrification walls offer a potentially useful way for passive in situ remediation of groundwater nitrate pollution, yet because of the low redox state they induce on the subsurface environment there is an inherent risk they can promote pollution-swapping phenomena. We evaluated pollution-swapping phenomena associated with the first two operational years of a woodchip denitrification wall that is being trialled in a fast-flowing shallow gravel aquifer of quartzo-feldspathic mineralogy. Following burial of woodchip below the water table there was immediate export of dissolved organic carbon (DOC), phosphorus and ammonium into the groundwater. Under the low redox state sustained by labile DOC, the wall initially provided 100% nitrate removal at the expense of acute and localised pollution that occurred in the form of a plume of dissolved iron, manganese and arsenic that were mobilised from the aquifer sediments, in conjunction with methane gas emission. Within one year however, the reactivity of the woodchip wall subsided to support a steady state condition in which nitrate reduction was the terminal electron acceptor process with no measurable methane emission. Having initially functioned as a sink for the potent greenhouse gas nitrous oxide (N₂O), evidence is that the woodchip wall is now exporting N₂O, albeit at rates less than those associated with productive agricultural land.

The Potential for Temporary Stand-Off Pads Integrated With Poplar and Willow Silvopastoral Systems for Managing Nitrogen Leaching

Intensive pastoral farming has been linked to adverse environmental effects such as soil degradation and increased fluxes of nitrogen, phosphorus, sediments, and pathogens into waterways, resulting in their degradation. Stand-off pads are engineered structures covered with bedding materials, available for occupation by stock to minimise those adverse effects to soil and water bodies. Wood chips are ideal for bedding due to their low cost, high water holding capacity, and stock preference as resting areas. While they reduce the mobility of both nutrients and pathogens, their effectiveness depends on the type of wood, size of the chips, pH, pad design, and feeding management used. Dissolved organic carbon, present in wood residue, may slow nitrogen mineralisation thereby decreasing loss via leachate. This effect depends on plant tannins and nutrients already stored within the plant tissue. Poplar and willow have high concentrations of tannins in leaves and bark with potential nitrification-inhibiting properties. When grown on-farm, these deep-rooted trees also reduce nitrogen leaching and prevent soil erosion. This review addresses the use of temporary stand-off pads within poplar or willow silvopastoral systems. Harvested trees can provide suitable wood chips for constructing the stand-off pad, while the deep rooting systems of the trees will reduce the moisture content of the pad, preventing waterlogging. A key objective is to discuss the feasibility and establishment of multiple temporary stand-off pads that allow for stock rotation from pad to pad, and subsequent on-site composting of wood-wastes into fertiliser, reducing both nutrient inputs and losses in agricultural systems. The review highlights the potential suitability of poplar and willow tree species for such a system.

Denitrifying bioreactor microbiome: Understanding pollution swapping and potential for improved performance

Denitrifying woodchip bioreactors are a best management practice to reduce nitrate-nitrogen (NO₃ -N) loading to surface waters from agricultural subsurface drainage. Their effectiveness has been proven in many studies, although variable results with respect to performance indicators have been observed. This paper serves the purpose of synthesizing the current state of the science in terms of the microbial community, its impact on the consistency of bioreactor performance, and its role in the production of potential harmful by-products including greenhouse gases, sulfate reduction, and methylmercury. Microbial processes other than denitrification have been observed in these bioreactor systems, including dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonium oxidation (anammox). Specific gene targets for denitrification, DNRA, anammox, and the production of harmful by-products are identified from bioreactor studies and other environmentally relevant systems for application in bioreactor studies. Lastly, cellulose depletion has been observed over time via increasing ligno-cellulose indices, therefore, the microbial metabolism of cellulose is an important function for bioreactor performance and management. Future work should draw from the knowledge of soil and wetland ecology to inform the study of bioreactor microbiomes.

Total and methylmercury concentrations in ground and surface waters in natural and restored freshwater wetlands in northern New York

Nearly half of freshwater wetlands have been lost due to human disturbance. In response, wetlands are being restored to retain their ecosystem services. A potentially adverse consequence of wetland function is the production of methylmercury (MeHg). We measured concentrations of mercury (Hg) species and ancillary parameters in groundwaters and surface waters from four natural and 16 restored wetlands in northern New York State, USA to investigate differences in concentrations of Hg species among wetlands. We found no obvious differences in concentrations of total mercury (THg) and methylmercury in pond waters between natural and restored wetlands. High values of %methylmercury were evident in both ground (38.8 ± 27.6%) and surface waters (43.4 ± 25.6%) suggesting these wetland complexes are highly efficient in converting ionic Hg to methylmercury, regardless if restored or natural. High methylation efficiency may be due to observed drying and rewetting cycles. Hg in pond waters is likely derived from direct atmospheric deposition or by mobilization from near-wetland shallow sediments, in addition to groundwater inflows. Water flow of groundwaters from the associated watershed into pond waters resulted in increases in concentrations of THg and methylmercury. Dissolved organic matter likely plays an important role in the supply of Hg to pond waters. Relationships between methylmercury and %methylmercury with sulfate and nitrate in groundwaters may suggest some chemical limitation on Hg methylation at higher concentrations of these anions. Because of the similarity in Hg dynamics for natural and restored wetlands, the most effective strategy to mitigate methylmercury production would be to decrease atmospheric Hg deposition.

Production of sulphides in denitrifying woodchip bioreactors

Denitrifying woodchip bioreactors, natural treatment systems used for the reduction of nitrates in agricultural runoff or groundwater, may cause adverse side effects within receiving waters. One of the least studied but nonetheless still serious issues is the production of hydrogen sulphide, which occurs in bioreactors under operating conditions favourable to its creation. The aim of this paper is to elucidate the effect of process parameters on the production of sulphides and the proportion of hydrogen sulphide in a 1-year-long experimental study with four laboratory-scale denitrifying bioreactors. During the study, the strong dependence of sulphate reduction and the production of sulphides on the effluent oxidation-reduction potential (ORP) and nitrate-nitrogen (NO₃-N) concentrations of bioreactors became evident. Sulphide formation occurred at concurrent effluent NO₃-N concentrations below 3 mg/L and ORPs lower than - 100 mV. The tested hydraulic retention time of 1.7 days was sufficiently long to achieve these conditions. At an effluent pH of 7 or lower, the majority of the total sulphides present were in the form of hydrogen sulphide. It is suggested that in order to avoid the production of hydrogen sulphide, the production of total sulphides has to be minimised.

Efficiency of mitigation measures targeting nutrient losses from agricultural drainage systems: A review

Diffusive losses of nitrogen and phosphorus from agricultural areas have detrimental effects on freshwater and marine ecosystems. Mitigation measures treating drainage water before it enters streams hold a high potential for reducing nitrogen and phosphorus losses from agricultural areas. To achieve a better understanding of the opportunities and challenges characterising current and new drainage mitigation measures in oceanic and continental climates, we reviewed the nitrate and total phosphorus removal efficiency of: (i) free water surface constructed wetlands, (ii) denitrifying bioreactors, (iii) controlled drainage, (iv) saturated buffer zones and (v) integrated buffer zones. Our data analysis showed that the load of nitrate was substantially reduced by all five drainage mitigation measures, while they mainly acted as sinks of total phosphorus, but occasionally, also as sources. The various factors influencing performance, such as design, runoff characteristics and hydrology, differed in the studies, resulting in large variation in the reported removal efficiencies.

Utility of 'Diffusive Gradients in Thin-Films' for the measurement of nitrate removal performance of denitrifying bioreactors

The increase in environmental nutrient availability as a result of human activities has necessitated the development of mitigation strategies for nutrient removal, such as nitrate. Current methods for determining the efficiency of different mitigation strategies required measurement of changes in nitrate concentrations, however, these methods can be expensive or do not account fully for the temporal variability of nitrate concentration. This study evaluated the utility of Diffusive Gradients in Thins-Films (DGT) for determining nitrate removal in two denitrifying bioreactors, and compared DGT performance to traditional approaches for determining performance, including high and low frequency water grab sampling. The binding layer was produced using the Purolite® A520E anion exchange resin. The uptake and elution efficiencies were 98.8% and 93.4% respectively. DGTs of three material diffusion layer thicknesses were placed in piezometers along longitudinal transects, to enable calculation of the diffusive boundary layer and provide replicates. These were removed after 16, 24 and 36 h, and the accumulated nitrate masses were extracted and quantified to calculate nitrate concentration. Concentrations were subsequently utilised to calculate nitrate removal rates in both bioreactors. Grab samples were taken at 30 and 60 min intervals over those periods, nitrate concentrations were also measured to determine nitrate removal. DGTs provided nitrate removal rates at bioreactor site one (controlled flow, wastewater treatment) of 14.83-30.75 g N m^-3 d^-1, and 1.22-3.63 g N m^-3 d^-1 at site two (variable flow, agricultural run-off). DGT determined nitrate concentrations and removal rates were in strong accordance with high frequency grab sampling, but data collection via DGTs was considerably easier. Utilising DGTs for the measurement of bioreactor performance overcame many of the challenges associated with high frequency grab sampling, and other methods, such as accounting for temporal variation in nitrate concentration and reduced analytical requirements.

Nitrous oxide and methane production from denitrifying woodchip bioreactors at three hydraulic residence times

Denitrifying bioreactors remove nitrate (NO₃^-) from agricultural drainage and are slated to be an integral part of nitrogen reduction strategies in the Mississippi River Basin. However, incomplete denitrification can result in nitrous oxide (N₂O) production and anaerobic conditions within bioreactors may be conducive to methane (CH₄) production via methanogenesis. Greenhouse gas production has the potential to trade excess NO₃^- in surface water with excess greenhouses gases in the atmosphere. Our study examined N₂O and CH₄ production from pilot scale (6.38 m³) bioreactors across three hydraulic residence times (HRTs), 2, 8, and 16 h. Production was measured from both the surface of the bioreactors and dissolved in the bioreactor effluent. Nitrous oxide and CH₄ was produced across all HRTs, with the majority dissolved in the effluent. Nitrous oxide production was significantly greater (P < 0.05) from 2 h HRTs (478.43 mg N₂O m^-3 day^-1) than from 8 (29.95 mg N₂O m^-3 day^-1) and 16 (36.61 mg N₂O m^-3 day^-1) hour HRTs. Methane production was significantly less (P < 0.05) from 2 h HRTs (0.51 g C m³ day^-1) compared to 8 (1.50 g C m³ day^-1) and 16 (1.69 g C m³ day^-1) hour HRTs. The 2 h HRTs had significantly greater (P = 0.05) impacts to climate change compared to 8 and 16 h HRTs. Results from this study suggest managing HRTs between 6 and 8 h in field bioreactors could minimize total greenhouse gas production and maximize NO₃^- removal.

Reducing adverse side effects by seasonally lowering nitrate removal in subsurface flow constructed wetlands

Subsurface flow constructed wetlands with wood chips (SSF-CWs) have proven to effectively reduce the loss of nitrogen (N) from agricultural fields to surface water, however in some cases production of negative side effects such as methane and phosphate occur. We examined if these side effects can be avoided by decreasing the hydraulic retention time (HRT) from on average 82 h to 11 h during summer to autumn in two pilot SSF-CWs. Furthermore, we investigated the potential of the SSF-CWs to reduce phosphorus (P) loss from agricultural drainage systems. The influent and effluent concentration of total N (TN), nitrate-N, total P, phosphate-P, suspended sediment, and sulphate were monitored for five years (2013-2017). Methane concentrations were measured during two periods in 2014 and 2017. Flow was measured continuously by electromagnetic flow-meters. The nitrate-N removal was reduced from 98-100% to 27-32% and the sulphate reduction from 32-53% to 1-2% when decreasing HRT. Concurrently this resulted in a considerable decrease in the difference between the effluent and influent concentration of phosphate-P and methane concentration compared to similar periods in the preceding years. The SSF-CWs retained 67-85% of the annual loading of particulate P, but acted as both a sink and source of phosphate-P, thus further initiatives are therefore required to prevent phosphate-P release from SSF-CWs. Although during the entire monitoring period the SSF-CWs retained 29-33% of the total P loading. In summary, this study stresses how important a holistic approach is when implementing and designing new N mitigation measures.

NO3 - removal efficiency in field denitrification beds: key controlling factors and main implications

Nitrate pollution is a growing environmental threat that affects both ground- and surface-water. The typically used technique for nitrate elimination in wastewater treatment plants cannot be applied for all water streams as it necessitates a highly developed technical infrastructure. Field denitrification beds comprise one strategy to treat surface water containing high nitrate loads, which typically is due to the increasing agricultural land use. Here, the water passes through a basin containing a cheap carbon material as electron donor that provides the environmental niche for a complex microbial biocenosis. The microorganisms catalyse the hydrolysis of the polymeric organic carbon substrate and a variety of fermentative and respiratory pathways that are in the end supposed to lead to an efficient denitrification process. This review article integrates our current knowledge on environmental and operating parameters of and within denitrification beds including biotic and abiotic factors influencing the nitrate removal efficiency. Steering of these two factors can allow to minimise pollution swapping and the formation of greenhouse gases.

Application of a microbial fuel cell-based biosensor for the energy-saving operation of macrophyte residues bioreactor with low concentration of dissolved organic carbon in effluents

The increasing application of plant residues bioreactor for aquatic environment remediation may release numerous dissolved organic carbon (DOC) into aquatic ecosystems. In this study, a microbial fuel cell (MFC) sensor was integrated with a macrophyte residues bioreactor (MRBR) to provide an energy-saving way for reduction of DOC concentrations in the effluent. Through re-utilization of macrophyte residues as solid carbon source, DOC concentrations in the effluent of MRBR increased to the maximum on day 5 and then dropped down rapidly to a low value, while the ratio of bioavailable DOC decreased gradually. Interestingly, it was found that there existed a linear relationship between DOC concentrations in initial residue leachate and the voltage from MFC biosensor (R² = 0.9852). Accordingly, aerobic biofilm through aeration were applied in the upper part of MRBR to enhance the degradation of DOC prior to discharge to aquatic systems, and aeration rate was adjusted based on MFC sensor signal. Further experiments demonstrated that when voltage decreased from 0.18 V to 0.09 V, a half of aeration rate (7.5 L min^-1) could still lead to a high DOC degradation efficiency (above 50%) and a low DOC concentration (∼10 mg L^-1) in the reactor effluent. Thus, the integrated MFC signal could be used to regulate the aeration rate in order to obtain a low DOC concentration in effluents under an energy-saving way.

Microbial Mercury Methylation in Aquatic Environments: A Critical Review of Published Field and Laboratory Studies

Methylmercury (MeHg) is an environmental contaminant of concern because it biomagnifies in aquatic food webs and poses a health hazard to aquatic biota, piscivorous wildlife and humans. The dominant source of MeHg to freshwater systems is the methylation of inorganic Hg (IHg) by anaerobic microorganisms; and it is widely agreed that in situ rates of Hg methylation depend on two general factors: the activity of Hg methylators and their uptake of IHg. A large body of research has focused on the biogeochemical processes that regulate these two factors in nature; and studies conducted within the past ten years have made substantial progress in identifying the genetic basis for intracellular methylation and defining the processes that govern the cellular uptake of IHg. Current evidence indicates that all Hg methylating anaerobes possess the gene pair hgcAB that encodes proteins essential for Hg methylation. These genes are found in a large variety of anaerobes, including iron reducers and methanogens; but sulfate reduction is the metabolic process most often reported to show strong links to MeHg production. The uptake of Hg substrate prior to methylation may occur by passive or active transport, or by a combination of both. Competitive inhibition of Hg uptake by Zn speaks in favor of active transport and suggests that essential metal transporters are involved. Shortly after its formation, MeHg is typically released from cells, but the efflux mechanisms are unknown. Although methylation facilitates Hg depuration from the cell, evidence suggests that the hgcAB genes are not induced or favored by Hg contamination. Instead, high MeHg production can be linked to high Hg bioavailability as a result of the formation of Hg(SH)₂, HgS nanoparticles, and Hg-thiol complexes. It is also possible that sulfidic conditions require strong essential metal uptake systems that inadvertently bring Hg into the cytoplasm of Hg methylating microbes. In comparison with freshwaters, Hg methylation in open ocean waters appears less restricted to anoxic environments. It does seem to occur mainly in oxygen deficient zones (ODZs), and possibly within anaerobic microzones of settling organic matter, but MeHg (CH₃Hg⁺) and Me₂Hg ((CH₃)₂Hg) have been shown to form also in surface water samples from the euphotic zone. Future studies may disclose whether several different pathways lead to Hg methylation in marine waters and explain why Me₂Hg is a significant Hg species in oceans but seemingly not in most freshwaters.

Mercury methylation in stormwater retention ponds at different stages in the management lifecycle

Stormwater retention ponds effectively manage erosion, flooding, and pollutant loadings, but are also sources of methylmercury (MeHg), a bioaccumulative neurotoxin which is produced by anaerobic aquatic microorganisms. Stormwater retention ponds have a 10-15 year working life, after which they are dredged and reflooded. In this study, we related MeHg biogeochemistry to the different stages of the management lifecycle. In a new, a dredged, and a mature stormwater retention pond, we measured MeHg and inorganic mercury (IHg) concentrations, and the potential for MeHg formation (Kmeth), during the early summer, peak summer, and fall of 2013. In our study sites, MeHg concentrations appear to be driven by mercury (Hg) methylation, indicated by significant correlations between Kmeth values and MeHg concentrations and the percent of Hg present as MeHg. Relationships between Hg variables and ancillary biogeochemistry suggest that Hg methylation is carried out by sulfate reducing bacteria, but that the process is modulated by the supply of IHg substrate, sediment total and labile organic carbon, and possibly competition with nitrate reducers. Wetlands at different points in the management lifecycle differ in terms of their MeHg biogeochemistry. The organic matter-poor new wetland had low MeHg production (mean Kmeth 0.014 per day) and sediment concentrations (mean 0.015 ng g-1), while the mature wetland both produced and accumulated MeHg about five times more actively. Methylmercury production capacity was only temporarily reduced in the reflooded sediments of the dredged wetland, which experienced rapid increases in Kmeth values from low (mean 0.015 per day) immediately after dredging, to values similar to those in the mature wetland after five months. This pattern may have been related to recolonization of the sediments with mercury methylators or increased microbial activities in response to the addition of fresh organic matter. Additional studies should focus on the applicability of these patterns to stormwater retention ponds in other areas, and particularly investigate the effects of stormwater pond dredging on their microbial ecology and MeHg biogeochemistry.

Denitrifying woodchip bioreactor and phosphorus filter pairing to minimize pollution swapping

Pairing denitrifying woodchip bioreactors and phosphorus-sorbing filters provides a unique, engineered approach for dual nutrient removal from waters impaired with both nitrogen (N) and phosphorus (P). This column study aimed to test placement of two P-filter media (acid mine drainage treatment residuals and steel slag) relative to a denitrifying system to maximize N and P removal and minimize pollution swapping under varying flow conditions (i.e., woodchip column hydraulic retention times (HRTs) of 7.2, 18, and 51 h; P-filter HRTs of 7.6-59 min). Woodchip denitrification columns were placed either upstream or downstream of P-filters filled with either medium. The configuration with woodchip denitrifying systems placed upstream of the P-filters generally provided optimized dissolved P removal efficiencies and removal rates. The P-filters placed upstream of the woodchip columns exhibited better P removal than downstream-placed P-filters only under overly long (i.e., N-limited) retention times when highly reduced effluent exited the woodchip bioreactors. The paired configurations using mine drainage residuals provided significantly greater P removal than the steel slag P-filters (e.g., 25-133 versus 8.8-48 g P removed m^-3 filter media d^-1, respectively), but there were no significant differences in N removal between treatments (removal rates: 8.0-18 g N removed m^-3 woodchips d^-1; N removal efficiencies: 18-95% across all HRTs). The range of HRTs tested here resulted in various undesirable pollution swapping by-products from the denitrifying bioreactors: nitrite production when nitrate removal was not complete and sulfate reduction, chemical oxygen demand production and decreased pH during overly long retention times. The downstream P-filter placement provided a polishing step for removal of chemical oxygen demand and nitrite.

Characterization of dissolved organic carbon leached from a woodchip bioreactor

Woodchip bioreactors are increasingly being applied to remove nitrate from agricultural subsurface drainage. However, dissolved organic carbon (DOC) released from woodchips may negatively affect the aquatic ecosystems and drinking water supplies. The objective of this study was to evaluate the leaching characteristics, disinfection byproduct (DBP) formation potentials, and treatability of DOC derived from a laboratory woodchip bioreactor. Initial flush of woodchips resulted in the release of high organic content from woodchips. The DOC concentration in the bioreactor effluent decreased rapidly from 71.8 to 20.7 mg/L during the first week of operation, and then gradually decreased to 3.0 mg/L after 240 days of operation under a hydraulic retention time of 24 h. A recycled steel chip filter removed an average of 44.2% of the DOC in the bioreactor effluent. Hydrophobic carbons and organic compounds with molecular weight of 10-100 KDa were the most abundant organic fractions in the DOC released from woodchips. These two DOC fractions were also the most important precursors to the formation of total organic halogen (TOX) during chlorination and chloramination. The TOX yields of woodchip DOC were similar to those of Suwannee River Fulvic Acid, suggesting that organic compounds released from woodchips have great potentials for DBP formation. Alum and polyaluminium chloride were more effective at removing woodchip DOC than ferric chloride during coagulation. Drinking water treatment plants may need to adjust coagulant types and doses in order to remove woodchip DOC in the source water to reduce the DBP formation potential.

Evaluation of Mechanistic Models for Nitrate Removal in Woodchip Bioreactors

Woodchip bioreactors (WBRs) are increasingly being applied to remove nitrate from runoff. In this study, replicate columns with aged woodchips were subjected to a range of measured flow rates and influent nitrate concentrations with an artificial stormwater matrix. Dissolved oxygen (DO), nitrate, and dissolved organic carbon (DOC) were measured along the length of the columns. A multispecies reactive transport model with Michaelis-Menten kinetics was developed to explain the concentration profiles of DO, nitrate, and DOC. Four additional models were developed based on simplifying assumptions, and all five models were tested for their ability to predict nitrate concentrations in the experimental columns. Global sensitivity analysis and constrained optimization determined the set of parameters that minimized the root-mean-squared error (RMSE) between the model and the experimental data. A k-fold validation test revealed no statistical difference in RMSE for predicting nitrate concentrations between a zero-order model and the other multispecies reactive transport models tested. Additionally, the multispecies reactive transport models demonstrated no significant differences in predicting DO and DOC concentrations. These results suggest that denitrification in an aged woodchip bioreactor at constant temperature can effectively be modeled using zero-order kinetics when nitrate concentrations are >2 mg-N L^-1. A multispecies model may be used if predicting DOC or DO concentrations is desired.

Water Use and Treatment in Container-Grown Specialty Crop Production: A Review

While governments and individuals strive to maintain the availability of high-quality water resources, many factors can "change the landscape" of water availability and quality, including drought, climate change, saltwater intrusion, aquifer depletion, population increases, and policy changes. Specialty crop producers, including nursery and greenhouse container operations, rely heavily on available high-quality water from surface and groundwater sources for crop production. Ideally, these growers should focus on increasing water application efficiency through proper construction and maintenance of irrigation systems, and timing of irrigation to minimize water and sediment runoff, which serve as the transport mechanism for agrichemical inputs and pathogens. Rainfall and irrigation runoff from specialty crop operations can contribute to impairment of groundwater and surface water resources both on-farm and into the surrounding environment. This review focuses on multiple facets of water use, reuse, and runoff in nursery and greenhouse production including current and future regulations, typical water contaminants in production runoff and available remediation technologies, and minimizing water loss and runoff (both on-site and off-site). Water filtration and treatment for the removal of sediment, pathogens, and agrichemicals are discussed, highlighting not only existing understanding but also knowledge gaps. Container-grown crop producers can either adopt research-based best management practices proactively to minimize the economic and environmental risk of limited access to high-quality water, be required to change by external factors such as regulations and fines, or adapt production practices over time as a result of changing climate conditions.

Nitrate and phosphate removal from agricultural subsurface drainage using laboratory woodchip bioreactors and recycled steel byproduct filters

Woodchip bioreactors have been increasingly used as an edge-of-field treatment technology to reduce the nitrate loadings to surface waters from agricultural subsurface drainage. Recent studies have shown that subsurface drainage can also contribute substantially to the loss of phosphate from agricultural soils. The objective of this study was to investigate nitrate and phosphate removal in subsurface drainage using laboratory woodchip bioreactors and recycled steel byproduct filters. The woodchip bioreactor demonstrated average nitrate removal efficiencies of 53.5-100% and removal rates of 10.1-21.6 g N/m(3)/d for an influent concentration of 20 mg N/L and hydraulic retention times (HRTs) of 6-24 h. When the influent nitrate concentration increased to 50 mg N/L, the bioreactor nitrate removal efficiency and rate averaged 75% and 18.9 g N/m(3)/d at an HRT of 24 h. Nitrate removal by the woodchips followed zero-order kinetics with rate constants of 1.42-1.80 mg N/L/h when nitrate was non-limiting. The steel byproduct filter effectively removed phosphate in the bioreactor effluent and the total phosphate adsorption capacity was 3.70 mg P/g under continuous flow conditions. Nitrite accumulation occurred in the woodchip bioreactor and the effluent nitrite concentrations increased with decreasing HRTs and increasing influent nitrate concentrations. The steel byproduct filter efficiently reduced the level of nitrite in the bioreactor effluent. Overall, the results of this study suggest that woodchip denitrification followed by steel byproduct filtration is an effective treatment technology for nitrate and phosphate removal in subsurface drainage.

Woodchip Denitrification Bioreactors: Impact of Temperature and Hydraulic Retention Time on Nitrate Removal

Woodchip denitrification bioreactors, a relatively new technology for edge-of-field treatment of subsurface agricultural drainage water, have shown potential for nitrate removal. However, few studies have evaluated the performance of these reactors under varied controlled conditions including initial woodchip age and a range of hydraulic retention times (HRTs) and temperatures similar to the field. This study investigated (i) the release of total organic C (TOC) during reactor start up for fresh and weathered woodchips, (ii) nitrate (NO-N) removal at HRTs ranging from 2 to 24 h, (iii) nitrate removal at influent NO-N concentrations of 10, 30, and 50 mg L, and (iv) NO-N removal at 10, 15, and 20°C. Greater TOC was released during bioreactor operation with fresh woodchips, whereas organic C release was low when the columns were packed with naturally weathered woodchips. Nitrate-N concentration reductions increased from 8 to 55% as HRT increased. Nitrate removal on a mass basis (g NO-N m d) did not follow the same trend, with relatively consistent mass removal measured as HRT increased from 1.7 to 21.2 h. Comparison of mean NO-N load reduction for various influent NO-N concentrations showed lower reduction at an influent concentration of 10 mg L and higher NO-N reductions at influent concentrations of 30 and 50 mg L. Nitrate-N removal showed a stepped increase with temperature. Temperature coefficient () factors calculated from NO-N removal rates ranged from 2.2 to 2.9.

Optimizing Hydraulic Retention Times in Denitrifying Woodchip Bioreactors Treating Recirculating Aquaculture System Wastewater

The performance of wood-based denitrifying bioreactors to treat high-nitrate wastewaters from aquaculture systems has not previously been demonstrated. Four pilot-scale woodchip bioreactors (approximately 1:10 scale) were constructed and operated for 268 d to determine the optimal range of design hydraulic retention times (HRTs) for nitrate removal. The bioreactors were operated under HRTs ranging from 6.6 to 55 h with influent nitrate concentrations generally between 20 and 80 mg NO-N L. These combinations resulted in N removal rates >39 g N m d, which is greater than previously reported. These high removal rates were due in large part to the relatively high chemical oxygen demand and warm temperature (∼19°C) of the wastewater. An optimized design HRT may not be the same based on metrics of N removal rate versus N removal efficiency; longer HRTs demonstrated higher removal efficiencies, and shorter HRTs had higher removal rates. When nitrate influent concentrations were approximately 75 mg NO-N L ( = 6 sample events), the shortest HRT (12 h) had the lowest removal efficiency (45%) but a significantly greater removal rate than the two longest HRTs (42 and 55 h), which were N limited. Sulfate reduction was also observed under highly reduced conditions and was exacerbated under prolonged N-limited environments. Balancing the removal rate and removal efficiency for this water chemistry with a design HRT of approximately 24 h would result in a 65% removal efficiency and removal rates of at least 18 g N m d.

Holistic Evaluation of Field-Scale Denitrifying Bioreactors as a Basis to Improve Environmental Sustainability

Denitrifying bioreactors convert nitrate-nitrogen (NO-N) to di-nitrogen and protect water quality. Herein, the performance of a pilot-scale bioreactor (10 m long, 5 m wide, 2 m deep) containing seven alternating cells filled with either sandy loam soil or lodgepole pine woodchip and with a novel "zig-zag" flow pattern was investigated. The influent water had an average NO-N concentration of 25 mg L. The performance of the bioreactor was evaluated in two scenarios. In Scenario 1, only NO-N removal was evaluated; in Scenario 2, NO-N removal, ammonium-N (NH-N), and dissolved reactive phosphorus (DRP) generation was considered. These data were used to generate a sustainability index (SI), which evaluated the overall performance taking these parameters into account. In Scenario 1, the bioreactor was a net reducer of contaminants, but it transformed into a net producer of contaminants in Scenario 2. Inquisition of the data using these scenarios meant that an optimum bioreactor design could be identified. This would involve reduction to two cells: a single sandy loam soil cell followed by a woodchip cell, which would remove NO-N and reduce greenhouse gas (GHG) emissions and DRP losses. An additional post-bed chamber containing media to eliminate NH-N and surface capping to reduce GHG emissions further is advised. Scenario modeling, such as that proposed in this paper, should ideally include GHG in the SI, but because different countries have different emission targets, future work should concentrate on the development of geographically appropriate weightings to facilitate the incorporation of GHG into a SI.

Use Alkalinity Monitoring to Optimize Bioreactor Performance

In recent years, the agricultural community has reduced flow of nitrogen from farmed landscapes to stream networks through the use of woodchip denitrification bioreactors. Although deployment of this practice is becoming more common to treat high-nitrate water from agricultural drainage pipes, information about bioreactor management strategies is sparse. This study focuses on the use of water monitoring, and especially the use of alkalinity monitoring, in five Iowa woodchip bioreactors to provide insights into and to help manage bioreactor chemistry in ways that will produce desirable outcomes. Results reported here for the five bioreactors show average annual nitrate load reductions between 50 and 80%, which is acceptable according to established practice standards. Alkalinity data, however, imply that nitrous oxide formation may have regularly occurred in at least three of the bioreactors that are considered to be closed systems. Nitrous oxide measurements of influent and effluent water provide evidence that alkalinity may be an important indicator of bioreactor performance. Bioreactor chemistry can be managed by manipulation of water throughput in ways that produce adequate nitrate removal while preventing undesirable side effects. We conclude that (i) water should be retained for longer periods of time in bioreactors where nitrous oxide formation is indicated, (ii) measuring only nitrate and sulfate concentrations is insufficient for proper bioreactor operation, and (iii) alkalinity monitoring should be implemented into protocols for bioreactor management.

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

Mercury (Hg) methylation produces the neurotoxic, highly bioaccumulative methylmercury (MeHg). The highly conserved nature of the recently identified Hg methylation genes hgcAB provides a foundation for broadly evaluating spatial and niche-specific patterns of microbial Hg methylation potential in nature. We queried hgcAB diversity and distribution in >3500 publicly available microbial metagenomes, encompassing a broad range of environments and generating a new global view of Hg methylation potential. The hgcAB genes were found in nearly all anaerobic (but not aerobic) environments, including oxygenated layers of the open ocean. Critically, hgcAB was effectively absent in ~1500 human and mammalian microbiomes, suggesting a low risk of endogenous MeHg production. New potential methylation habitats were identified, including invertebrate digestive tracts, thawing permafrost soils, coastal "dead zones," soils, sediments, and extreme environments, suggesting multiple routes for MeHg entry into food webs. Several new taxonomic groups capable of methylating Hg emerged, including lineages having no cultured representatives. Phylogenetic analysis points to an evolutionary relationship between hgcA and genes encoding corrinoid iron-sulfur proteins functioning in the ancient Wood-Ljungdahl carbon fixation pathway, suggesting that methanogenic Archaea may have been the first to perform these biotransformations.

Characterizing the Performance of Denitrifying Bioreactors during Simulated Subsurface Drainage Events

The need to mitigate nitrate export from corn and soybean fields with subsurface (tile) drainage systems, a major environmental issue in the midwestern United States, has made the efficacy of field-edge, subsurface bioreactors an active subject of research. This study of three such bioreactors located on the University of Illinois South Farms during their first 6 mo of operation (July-Dec. 2012) focused on the interactions of seasonal temperature changes and hydraulic retention times (HRTs), which were subject to experimental manipulation. Changes in nitrate, phosphate, oxygen, and dissolved organic carbon were monitored in influent and effluent to assess the benefits and the potential harmful effects of bioreactors for nearby aquatic ecosystems. On average, bioreactors reduced nitrate loads by 63%, with minimum and maximum reductions of 20 and 98% at low and high HRTs, respectively. The removal rate per unit reactor volume averaged 11.6 g NO-N m d (range, 5-30 g NO-N m d). Multiple regression models with exponential dependencies on influent water temperature and on HRT explained 73% of the variance in NO-N load reduction and 43% of the variance in its removal rate. Although concentrations of dissolved reactive phosphorus and dissolved organic carbon in the bioreactor effluent increased relative to the influent by an order of magnitude during initial tests, within 1 mo of operation they stabilized at nearly equal values.

Molecular detection of Candidatus Scalindua pacifica and environmental responses of sediment anammox bacterial community in the Bohai Sea, China

The Bohai Sea is a large semi-enclosed shallow water basin, which receives extensive river discharges of various terrestrial and anthropogenic materials such as sediments, nutrients and contaminants. How these terrigenous inputs may influence the diversity, community structure, biogeographical distribution, abundance and ecophysiology of the sediment anaerobic ammonium oxidation (anammox) bacteria was unknown. To answer this question, an investigation employing both 16S rRNA and hzo gene biomarkers was carried out. Ca. Scalindua bacteria were predominant in the surface sediments of the Bohai Sea, while non-Scalindua anammox bacteria were also detected in the Yellow River estuary and inner part of Liaodong Bay that received strong riverine and anthropogenic impacts. A novel 16S rRNA gene sequence clade was identified, putatively representing an anammox bacterial new candidate species tentatively named "Ca. Scalindua pacifica". Several groups of environmental factors, usually with distinct physicochemical or biogeochemical natures, including general marine and estuarine physicochemical properties, availability of anammox substrates (inorganic N compounds), alternative reductants and oxidants, environmental variations caused by river discharges and associated contaminants such as heavy metals, were identified to likely play important roles in influencing the ecology and biogeochemical functioning of the sediment anammox bacteria. In addition to inorganic N compounds that might play a key role in shaping the anammox microbiota, organic carbon, organic nitrogen, sulfate, sulfide and metals all showed the potentials to participate in the anammox process, releasing the strict dependence of the anammox bacteria upon the direct availability of inorganic N nutrients that might be limiting in certain areas of the Bohai Sea. The importance of inorganic N nutrients and certain other environmental factors to the sediment anammox microbiota suggests that these bacteria were active for the in situ N transforming process and maintained a versatile life style well adapted to the varying environmental conditions of the studied coastal ocean.

Evaluation of a denitrification wall to reduce surface water nitrogen loads

Denitrification walls have significantly reduced nitrogen concentrations in groundwater for at least 15 yr. This has spurred interest in developing methods to efficiently increase capture volume to reduce N loads in larger watersheds. The objective of this study was to maximize treatment volume by locating a wall where a large groundwatershed was funneled toward seepage slope headwaters. Nitrogen concentration and load were measured before and after wall installation in paired treatment and control streams. Beginning 2 d after installation, nitrogen concentration in the treatment stream declined from 6.7 ± 1.2 to 3.9 ± 0.78 mg L and total N loading rate declined by 65% (391 kg yr) with no corresponding decline in the control watershed. This wall, which only comprised 10 to 11% of the edge of field area that contributed to the treatment watershed, treated approximately 60% of the stream discharge, which confirmed the targeted approach. The total load reduction measured in the stream 155 m downstream from the wall (340 kg yr) was higher than that found in another study that measured load reductions in groundwater wells immediately around the wall (228 kg yr). This indicated the possibility of an extended impact on denitrification from carbon exported beyond the wall. This extended impact was inauspiciously confirmed when oxygen levels at the stream headwaters temporarily declined for 50 d. This research indicates that targeting walls adjacent to streams can effectively reduce N loading in receiving waters, although with a potentially short-term impact on water quality.