1
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Kim JZ, Larsen B, Parkes L. Shaping dynamical neural computations using spatiotemporal constraints. Biochem Biophys Res Commun 2024; 728:150302. [PMID: 38968771 DOI: 10.1016/j.bbrc.2024.150302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 03/21/2024] [Accepted: 04/11/2024] [Indexed: 07/07/2024]
Abstract
Dynamics play a critical role in computation. The principled evolution of states over time enables both biological and artificial networks to represent and integrate information to make decisions. In the past few decades, significant multidisciplinary progress has been made in bridging the gap between how we understand biological versus artificial computation, including how insights gained from one can translate to the other. Research has revealed that neurobiology is a key determinant of brain network architecture, which gives rise to spatiotemporally constrained patterns of activity that underlie computation. Here, we discuss how neural systems use dynamics for computation, and claim that the biological constraints that shape brain networks may be leveraged to improve the implementation of artificial neural networks. To formalize this discussion, we consider a natural artificial analog of the brain that has been used extensively to model neural computation: the recurrent neural network (RNN). In both the brain and the RNN, we emphasize the common computational substrate atop which dynamics occur-the connectivity between neurons-and we explore the unique computational advantages offered by biophysical constraints such as resource efficiency, spatial embedding, and neurodevelopment.
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Affiliation(s)
- Jason Z Kim
- Department of Physics, Cornell University, Ithaca, NY, 14853, USA.
| | - Bart Larsen
- Department of Pediatrics, Masonic Institute for the Developing Brain, University of Minnesota, USA
| | - Linden Parkes
- Department of Psychiatry, Rutgers University, Piscataway, NJ, 08854, USA.
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2
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Herrera B, Schall JD, Riera JJ. Agranular frontal cortical microcircuit underlying cognitive control in macaques. Front Neural Circuits 2024; 18:1389110. [PMID: 38601266 PMCID: PMC11005916 DOI: 10.3389/fncir.2024.1389110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 03/18/2024] [Indexed: 04/12/2024] Open
Abstract
The error-related negativity and an N2-component recorded over medial frontal cortex index core functions of cognitive control. While they are known to originate from agranular frontal areas, the underlying microcircuit mechanisms remain elusive. Most insights about microcircuit function have been derived from variations of the so-called canonical microcircuit model. These microcircuit architectures are based extensively on studies from granular sensory cortical areas in monkeys, cats, and rodents. However, evidence has shown striking cytoarchitectonic differences across species and differences in the functional relationships across cortical layers in agranular compared to granular sensory areas. In this minireview, we outline a tentative microcircuit model underlying cognitive control in the agranular frontal cortex of primates. The model incorporates the main GABAergic interneuron subclasses with specific laminar arrangements and target regions on pyramidal cells. We emphasize the role of layer 5 pyramidal cells in error and conflict detection. We offer several specific questions necessary for creating a specific intrinsic microcircuit model of the agranular frontal cortex.
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Affiliation(s)
- Beatriz Herrera
- Department of Biomedical Engineering, Florida International University, Miami, FL, United States
| | - Jeffrey D. Schall
- Centre for Vision Research, Centre for Integrative & Applied Neuroscience, Department of Biology and Psychology, York University, Toronto, ON, Canada
| | - Jorge J. Riera
- Department of Biomedical Engineering, Florida International University, Miami, FL, United States
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3
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García-Rosales F, Schaworonkow N, Hechavarria JC. Oscillatory Waveform Shape and Temporal Spike Correlations Differ across Bat Frontal and Auditory Cortex. J Neurosci 2024; 44:e1236232023. [PMID: 38262724 PMCID: PMC10919256 DOI: 10.1523/jneurosci.1236-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 11/01/2023] [Accepted: 11/29/2023] [Indexed: 01/25/2024] Open
Abstract
Neural oscillations are associated with diverse computations in the mammalian brain. The waveform shape of oscillatory activity measured in the cortex relates to local physiology and can be informative about aberrant or dynamically changing states. However, how waveform shape differs across distant yet functionally and anatomically related cortical regions is largely unknown. In this study, we capitalize on simultaneous recordings of local field potentials (LFPs) in the auditory and frontal cortices of awake, male Carollia perspicillata bats to examine, on a cycle-by-cycle basis, waveform shape differences across cortical regions. We find that waveform shape differs markedly in the fronto-auditory circuit even for temporally correlated rhythmic activity in comparable frequency ranges (i.e., in the delta and gamma bands) during spontaneous activity. In addition, we report consistent differences between areas in the variability of waveform shape across individual cycles. A conceptual model predicts higher spike-spike and spike-LFP correlations in regions with more asymmetric shapes, a phenomenon that was observed in the data: spike-spike and spike-LFP correlations were higher in the frontal cortex. The model suggests a relationship between waveform shape differences and differences in spike correlations across cortical areas. Altogether, these results indicate that oscillatory activity in the frontal and auditory cortex possesses distinct dynamics related to the anatomical and functional diversity of the fronto-auditory circuit.
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Affiliation(s)
- Francisco García-Rosales
- Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt am Main 60528, Germany
| | - Natalie Schaworonkow
- Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt am Main 60528, Germany
| | - Julio C Hechavarria
- Institut für Zellbiologie und Neurowissenschaft, Goethe-Universität, Frankfurt am Main 60438, Germany
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4
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Shamir I, Assaf Y, Shamir R. Clustering the cortical laminae: in vivo parcellation. Brain Struct Funct 2024; 229:443-458. [PMID: 38193916 PMCID: PMC10917860 DOI: 10.1007/s00429-023-02748-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 12/04/2023] [Indexed: 01/10/2024]
Abstract
The laminar microstructure of the cerebral cortex has distinct anatomical characteristics of the development, function, connectivity, and even various pathologies of the brain. In recent years, multiple neuroimaging studies have utilized magnetic resonance imaging (MRI) relaxometry to visualize and explore this intricate microstructure, successfully delineating the cortical laminar components. Despite this progress, T1 is still primarily considered a direct measure of myeloarchitecture (myelin content), rather than a probe of tissue cytoarchitecture (cellular composition). This study aims to offer a robust, whole-brain validation of T1 imaging as a practical and effective tool for exploring the laminar composition of the cortex. To do so, we cluster complex microstructural cortical datasets of both human (N = 30) and macaque (N = 1) brains using an adaptation of an algorithm for clustering cell omics profiles. The resulting cluster patterns are then compared to established atlases of cytoarchitectonic features, exhibiting significant correspondence in both species. Lastly, we demonstrate the expanded applicability of T1 imaging by exploring some of the cytoarchitectonic features behind various unique skillsets, such as musicality and athleticism.
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Affiliation(s)
- Ittai Shamir
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
| | - Yaniv Assaf
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Ron Shamir
- Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel
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5
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Luu P, Tucker DM, Friston K. From active affordance to active inference: vertical integration of cognition in the cerebral cortex through dual subcortical control systems. Cereb Cortex 2024; 34:bhad458. [PMID: 38044461 DOI: 10.1093/cercor/bhad458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 11/07/2023] [Accepted: 11/08/2023] [Indexed: 12/05/2023] Open
Abstract
In previous papers, we proposed that the dorsal attention system's top-down control is regulated by the dorsal division of the limbic system, providing a feedforward or impulsive form of control generating expectancies during active inference. In contrast, we proposed that the ventral attention system is regulated by the ventral limbic division, regulating feedback constraints and error-correction for active inference within the neocortical hierarchy. Here, we propose that these forms of cognitive control reflect vertical integration of subcortical arousal control systems that evolved for specific forms of behavior control. The feedforward impetus to action is regulated by phasic arousal, mediated by lemnothalamic projections from the reticular activating system of the lower brainstem, and then elaborated by the hippocampus and dorsal limbic division. In contrast, feedback constraint-based on environmental requirements-is regulated by the tonic activation furnished by collothalamic projections from the midbrain arousal control centers, and then sustained and elaborated by the amygdala, basal ganglia, and ventral limbic division. In an evolutionary-developmental analysis, understanding these differing forms of active affordance-for arousal and motor control within the subcortical vertebrate neuraxis-may help explain the evolution of active inference regulating the cognition of expectancy and error-correction within the mammalian 6-layered neocortex.
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Affiliation(s)
- Phan Luu
- Brain Electrophysiology Laboratory Company, Riverfront Research Park, 1776 Millrace Dr., Eugene, OR 97403, United States
- Department of Psychology, University of Oregon, Eugene, OR 97403, United States
| | - Don M Tucker
- Brain Electrophysiology Laboratory Company, Riverfront Research Park, 1776 Millrace Dr., Eugene, OR 97403, United States
- Department of Psychology, University of Oregon, Eugene, OR 97403, United States
| | - Karl Friston
- The Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, London WC1N 3AR, United Kingdom
- VERSES AI Research Lab, Los Angeles, CA 90016, USA
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6
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Graïc JM, Corain L, Finos L, Vadori V, Grisan E, Gerussi T, Orekhova K, Centelleghe C, Cozzi B, Peruffo A. Age-related changes in the primary auditory cortex of newborn, adults and aging bottlenose dolphins ( Tursiops truncatus) are located in the upper cortical layers. Front Neuroanat 2024; 17:1330384. [PMID: 38250022 PMCID: PMC10796513 DOI: 10.3389/fnana.2023.1330384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 12/06/2023] [Indexed: 01/23/2024] Open
Abstract
Introduction The auditory system of dolphins and whales allows them to dive in dark waters, hunt for prey well below the limit of solar light absorption, and to communicate with their conspecific. These complex behaviors require specific and sufficient functional circuitry in the neocortex, and vicarious learning capacities. Dolphins are also precocious animals that can hold their breath and swim within minutes after birth. However, diving and hunting behaviors are likely not innate and need to be learned. Our hypothesis is that the organization of the auditory cortex of dolphins grows and mature not only in the early phases of life, but also in adults and aging individuals. These changes may be subtle and involve sub-populations of cells specificall linked to some circuits. Methods In the primary auditory cortex of 11 bottlenose dolphins belonging to three age groups (calves, adults, and old animals), neuronal cell shapes were analyzed separately and by cortical layer using custom computer vision and multivariate statistical analysis, to determine potential minute morphological differences across these age groups. Results The results show definite changes in interneurons, characterized by round and ellipsoid shapes predominantly located in upper cortical layers. Notably, neonates interneurons exhibited a pattern of being closer together and smaller, developing into a more dispersed and diverse set of shapes in adulthood. Discussion This trend persisted in older animals, suggesting a continuous development of connections throughout the life of these marine animals. Our findings further support the proposition that thalamic input reach upper layers in cetaceans, at least within a cortical area critical for their survival. Moreover, our results indicate the likelihood of changes in cell populations occurring in adult animals, prompting the need for characterization.
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Affiliation(s)
- Jean-Marie Graïc
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Livio Corain
- Department of Management and Engineering, University of Padova, Vicenza, Italy
| | - Livio Finos
- Department of Statistical Sciences, University of Padova, Padua, Italy
| | - Valentina Vadori
- Department of Computer Science and Informatics, London South Bank University, London, United Kingdom
| | - Enrico Grisan
- Department of Computer Science and Informatics, London South Bank University, London, United Kingdom
| | - Tommaso Gerussi
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Ksenia Orekhova
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Cinzia Centelleghe
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Bruno Cozzi
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Antonella Peruffo
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
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Kim JZ, Larsen B, Parkes L. Shaping dynamical neural computations using spatiotemporal constraints. ARXIV 2023:arXiv:2311.15572v1. [PMID: 38076517 PMCID: PMC10705584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
Abstract
Dynamics play a critical role in computation. The principled evolution of states over time enables both biological and artificial networks to represent and integrate information to make decisions. In the past few decades, significant multidisciplinary progress has been made in bridging the gap between how we understand biological versus artificial computation, including how insights gained from one can translate to the other. Research has revealed that neurobiology is a key determinant of brain network architecture, which gives rise to spatiotemporally constrained patterns of activity that underlie computation. Here, we discuss how neural systems use dynamics for computation, and claim that the biological constraints that shape brain networks may be leveraged to improve the implementation of artificial neural networks. To formalize this discussion, we consider a natural artificial analog of the brain that has been used extensively to model neural computation: the recurrent neural network (RNN). In both the brain and the RNN, we emphasize the common computational substrate atop which dynamics occur-the connectivity between neurons-and we explore the unique computational advantages offered by biophysical constraints such as resource efficiency, spatial embedding, and neurodevelopment.
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Affiliation(s)
- Jason Z. Kim
- Department of Physics, Cornell University, Ithaca, NY 14853, USA
| | - Bart Larsen
- Department of Pediatrics, Masonic Institute for the Developing Brain, University of Minnesota
| | - Linden Parkes
- Department of Psychiatry, Rutgers University, Piscataway, NJ 08854, USA
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8
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Herrera B, Sajad A, Errington SP, Schall JD, Riera JJ. Cortical origin of theta error signals. Cereb Cortex 2023; 33:11300-11319. [PMID: 37804250 PMCID: PMC10690871 DOI: 10.1093/cercor/bhad367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 09/13/2023] [Accepted: 09/14/2023] [Indexed: 10/09/2023] Open
Abstract
A multi-scale approach elucidated the origin of the error-related-negativity (ERN), with its associated theta-rhythm, and the post-error-positivity (Pe) in macaque supplementary eye field (SEF). Using biophysical modeling, synaptic inputs to a subpopulation of layer-3 (L3) and layer-5 (L5) pyramidal cells (PCs) were optimized to reproduce error-related spiking modulation and inter-spike intervals. The intrinsic dynamics of dendrites in L5 but not L3 error PCs generate theta rhythmicity with random phases. Saccades synchronized the phases of the theta-rhythm, which was magnified on errors. Contributions from error PCs to the laminar current source density (CSD) observed in SEF were negligible and could not explain the observed association between error-related spiking modulation in L3 PCs and scalp-EEG. CSD from recorded laminar field potentials in SEF was comprised of multipolar components, with monopoles indicating strong electro-diffusion, dendritic/axonal electrotonic current leakage outside SEF, or violations of the model assumptions. Our results also demonstrate the involvement of secondary cortical regions, in addition to SEF, particularly for the later Pe component. The dipolar component from the observed CSD paralleled the ERN dynamics, while the quadrupolar component paralleled the Pe. These results provide the most advanced explanation to date of the cellular mechanisms generating the ERN.
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Affiliation(s)
- Beatriz Herrera
- Department of Biomedical Engineering, Florida International University, Miami, FL 33174, United States
| | - Amirsaman Sajad
- Department of Psychology, Vanderbilt Vision Research Center, Center for Integrative & Cognitive Neuroscience, Vanderbilt University, Nashville, TN 37203, United States
| | - Steven P Errington
- Department of Psychology, Vanderbilt Vision Research Center, Center for Integrative & Cognitive Neuroscience, Vanderbilt University, Nashville, TN 37203, United States
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, United States
| | - Jeffrey D Schall
- Centre for Vision Research, Vision: Science to Applications Program, Departments of Biology and Psychology, York University, Toronto, ON M3J 1P3, Canada
| | - Jorge J Riera
- Department of Biomedical Engineering, Florida International University, Miami, FL 33174, United States
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9
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Shamir I, Assaf Y. Expanding connectomics to the laminar level: A perspective. Netw Neurosci 2023; 7:377-388. [PMID: 37397881 PMCID: PMC10312257 DOI: 10.1162/netn_a_00304] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 12/15/2022] [Indexed: 11/10/2023] Open
Abstract
Despite great progress in uncovering the complex connectivity patterns of the human brain over the last two decades, the field of connectomics still experiences a bias in its viewpoint of the cerebral cortex. Due to a lack of information regarding exact end points of fiber tracts inside cortical gray matter, the cortex is commonly reduced to a single homogenous unit. Concurrently, substantial developments have been made over the past decade in the use of relaxometry and particularly inversion recovery imaging for exploring the laminar microstructure of cortical gray matter. In recent years, these developments have culminated in an automated framework for cortical laminar composition analysis and visualization, followed by studies of cortical dyslamination in epilepsy patients and age-related differences in laminar composition in healthy subjects. This perspective summarizes the developments and remaining challenges of multi-T1 weighted imaging of cortical laminar substructure, the current limitations in structural connectomics, and the recent progress in integrating these fields into a new model-based subfield termed 'laminar connectomics'. In the coming years, we predict an increased use of similar generalizable, data-driven models in connectomics with the purpose of integrating multimodal MRI datasets and providing a more nuanced and detailed characterization of brain connectivity.
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Affiliation(s)
- Ittai Shamir
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Yaniv Assaf
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
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10
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Katsumi Y, Zhang J, Chen D, Kamona N, Bunce JG, Hutchinson JB, Yarossi M, Tunik E, Dickerson BC, Quigley KS, Barrett LF. Correspondence of functional connectivity gradients across human isocortex, cerebellum, and hippocampus. Commun Biol 2023; 6:401. [PMID: 37046050 PMCID: PMC10097701 DOI: 10.1038/s42003-023-04796-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 04/03/2023] [Indexed: 04/14/2023] Open
Abstract
Gradient mapping is an important technique to summarize high dimensional biological features as low dimensional manifold representations in exploring brain structure-function relationships at various levels of the cerebral cortex. While recent studies have characterized the major gradients of functional connectivity in several brain structures using this technique, very few have systematically examined the correspondence of such gradients across structures under a common systems-level framework. Using resting-state functional magnetic resonance imaging, here we show that the organizing principles of the isocortex, and those of the cerebellum and hippocampus in relation to the isocortex, can be described using two common functional gradients. We suggest that the similarity in functional connectivity gradients across these structures can be meaningfully interpreted within a common computational framework based on the principles of predictive processing. The present results, and the specific hypotheses that they suggest, represent an important step toward an integrative account of brain function.
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Affiliation(s)
- Yuta Katsumi
- Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA.
| | - Jiahe Zhang
- Department of Psychology, Northeastern University, Boston, MA, 02115, USA
| | - Danlei Chen
- Department of Psychology, Northeastern University, Boston, MA, 02115, USA
| | - Nada Kamona
- Department of Psychology, Northeastern University, Boston, MA, 02115, USA
| | - Jamie G Bunce
- Department of Biology, Northeastern University, Boston, MA, 02115, USA
| | | | - Mathew Yarossi
- Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, 02115, USA
- Department of Physical Therapy, Movement, and Rehabilitation Science, Northeastern University, Boston, MA, 02115, USA
| | - Eugene Tunik
- Department of Physical Therapy, Movement, and Rehabilitation Science, Northeastern University, Boston, MA, 02115, USA
| | - Bradford C Dickerson
- Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
- Department of Psychiatry, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
| | - Karen S Quigley
- Department of Psychology, Northeastern University, Boston, MA, 02115, USA
| | - Lisa Feldman Barrett
- Department of Psychology, Northeastern University, Boston, MA, 02115, USA
- Department of Psychiatry, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA
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11
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Parkes L, Kim JZ, Stiso J, Calkins ME, Cieslak M, Gur RE, Gur RC, Moore TM, Ouellet M, Roalf DR, Shinohara RT, Wolf DH, Satterthwaite TD, Bassett DS. Asymmetric signaling across the hierarchy of cytoarchitecture within the human connectome. SCIENCE ADVANCES 2022; 8:eadd2185. [PMID: 36516263 PMCID: PMC9750154 DOI: 10.1126/sciadv.add2185] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 11/10/2022] [Indexed: 05/30/2023]
Abstract
Cortical variations in cytoarchitecture form a sensory-fugal axis that shapes regional profiles of extrinsic connectivity and is thought to guide signal propagation and integration across the cortical hierarchy. While neuroimaging work has shown that this axis constrains local properties of the human connectome, it remains unclear whether it also shapes the asymmetric signaling that arises from higher-order topology. Here, we used network control theory to examine the amount of energy required to propagate dynamics across the sensory-fugal axis. Our results revealed an asymmetry in this energy, indicating that bottom-up transitions were easier to complete compared to top-down. Supporting analyses demonstrated that asymmetries were underpinned by a connectome topology that is wired to support efficient bottom-up signaling. Lastly, we found that asymmetries correlated with differences in communicability and intrinsic neuronal time scales and lessened throughout youth. Our results show that cortical variation in cytoarchitecture may guide the formation of macroscopic connectome topology.
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Affiliation(s)
- Linden Parkes
- Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Jason Z. Kim
- Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Jennifer Stiso
- Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Monica E. Calkins
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
| | - Matthew Cieslak
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
- Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Raquel E. Gur
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
- Department of Neurology, Perelman School of Medicine, Philadelphia, PA 19104, USA
- Department of Radiology, Perelman School of Medicine, Philadelphia, PA 19104, USA
| | - Ruben C. Gur
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
- Department of Neurology, Perelman School of Medicine, Philadelphia, PA 19104, USA
- Department of Radiology, Perelman School of Medicine, Philadelphia, PA 19104, USA
| | - Tyler M. Moore
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
| | - Mathieu Ouellet
- Department of Electrical and Systems Engineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - David R. Roalf
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
| | - Russell T. Shinohara
- Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Penn Statistics in Imaging and Visualization Center, Department of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Daniel H. Wolf
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Theodore D. Satterthwaite
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Lifespan Brain Institute, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
- Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Dani S. Bassett
- Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Neurology, Perelman School of Medicine, Philadelphia, PA 19104, USA
- Department of Electrical and Systems Engineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Physics and Astronomy, College of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA
- Santa Fe Institute, Santa Fe, NM 87501, USA
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12
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Wallace MN, Zobay O, Hardman E, Thompson Z, Dobbs P, Chakrabarti L, Palmer AR. The large numbers of minicolumns in the primary visual cortex of humans, chimpanzees and gorillas are related to high visual acuity. Front Neuroanat 2022; 16:1034264. [PMID: 36439196 PMCID: PMC9681811 DOI: 10.3389/fnana.2022.1034264] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 10/21/2022] [Indexed: 11/10/2022] Open
Abstract
Minicolumns are thought to be a fundamental neural unit in the neocortex and their replication may have formed the basis of the rapid cortical expansion that occurred during primate evolution. We sought evidence of minicolumns in the primary visual cortex (V-1) of three great apes, three rodents and representatives from three other mammalian orders: Eulipotyphla (European hedgehog), Artiodactyla (domestic pig) and Carnivora (ferret). Minicolumns, identified by the presence of a long bundle of radial, myelinated fibers stretching from layer III to the white matter of silver-stained sections, were found in the human, chimpanzee, gorilla and guinea pig V-1. Shorter bundles confined to one or two layers were found in the other species but represent modules rather than minicolumns. The inter-bundle distance, and hence density of minicolumns, varied systematically both within a local area that might represent a hypercolumn but also across the whole visual field. The distance between all bundles had a similar range for human, chimpanzee, gorilla, ferret and guinea pig: most bundles were 20-45 μm apart. By contrast, the space between bundles was greater for the hedgehog and pig (20-140 μm). The mean density of minicolumns was greater in tangential sections of the gorilla and chimpanzee (1,243-1,287 bundles/mm2) than in human (314-422 bundles/mm2) or guinea pig (643 bundles/mm2). The minicolumnar bundles did not form a hexagonal lattice but were arranged in thin curving and branched bands separated by thicker bands of neuropil/somata. Estimates of the total number of modules/minicolumns within V-1 were strongly correlated with visual acuity.
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Affiliation(s)
- Mark N. Wallace
- Medical Research Council (MRC) Institute of Hearing Research, University Park, Nottingham, United Kingdom
- Hearing Sciences, Mental Health and Clinical Neurosciences, School of Medicine, University of Nottingham, Nottingham, United Kingdom
| | - Oliver Zobay
- Medical Research Council (MRC) Institute of Hearing Research, University Park, Nottingham, United Kingdom
- School of Medicine, University of Nottingham, Hearing Sciences—Scottish Section, Glasgow Royal Infirmary, Glasgow, United Kingdom
| | - Eden Hardman
- Medical Research Council (MRC) Institute of Hearing Research, University Park, Nottingham, United Kingdom
| | - Zoe Thompson
- Medical Research Council (MRC) Institute of Hearing Research, University Park, Nottingham, United Kingdom
| | - Phillipa Dobbs
- Veterinary Department, Twycross Zoo, East Midland Zoological Society, Atherstone, United Kingdom
| | - Lisa Chakrabarti
- School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Nottingham, United Kingdom
| | - Alan R. Palmer
- Medical Research Council (MRC) Institute of Hearing Research, University Park, Nottingham, United Kingdom
- Hearing Sciences, Mental Health and Clinical Neurosciences, School of Medicine, University of Nottingham, Nottingham, United Kingdom
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13
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Functional architecture of executive control and associated event-related potentials in macaques. Nat Commun 2022; 13:6270. [PMID: 36271051 PMCID: PMC9586948 DOI: 10.1038/s41467-022-33942-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 10/07/2022] [Indexed: 12/25/2022] Open
Abstract
The medial frontal cortex (MFC) enables executive control by monitoring relevant information and using it to adapt behavior. In macaques performing a saccade countermanding (stop-signal) task, we simultaneously recorded electrical potentials over MFC and neural spiking across all layers of the supplementary eye field (SEF). We report the laminar organization of neurons enabling executive control by monitoring the conflict between incompatible responses, the timing of events, and sustaining goal maintenance. These neurons were a mix of narrow-spiking and broad-spiking found in all layers, but those predicting the duration of control and sustaining the task goal until the release of operant control were more commonly narrow-spiking neurons confined to layers 2 and 3 (L2/3). We complement these results with evidence for a monkey homolog of the N2/P3 event-related potential (ERP) complex associated with response inhibition. N2 polarization varied with error-likelihood and P3 polarization varied with the duration of expected control. The amplitude of the N2 and P3 were predicted by the spike rate of different classes of neurons located in L2/3 but not L5/6. These findings reveal features of the cortical microcircuitry supporting executive control and producing associated ERPs.
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14
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Hahn G, Kumar A, Schmidt H, Knösche TR, Deco G. Rate and oscillatory switching dynamics of a multilayer visual microcircuit model. eLife 2022; 11:77594. [PMID: 35994330 PMCID: PMC9395191 DOI: 10.7554/elife.77594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 07/21/2022] [Indexed: 11/16/2022] Open
Abstract
The neocortex is organized around layered microcircuits consisting of a variety of excitatory and inhibitory neuronal types which perform rate- and oscillation-based computations. Using modeling, we show that both superficial and deep layers of the primary mouse visual cortex implement two ultrasensitive and bistable switches built on mutual inhibitory connectivity motives between somatostatin, parvalbumin, and vasoactive intestinal polypeptide cells. The switches toggle pyramidal neurons between high and low firing rate states that are synchronized across layers through translaminar connectivity. Moreover, inhibited and disinhibited states are characterized by low- and high-frequency oscillations, respectively, with layer-specific differences in frequency and power which show asymmetric changes during state transitions. These findings are consistent with a number of experimental observations and embed firing rate together with oscillatory changes within a switch interpretation of the microcircuit.
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Affiliation(s)
- Gerald Hahn
- Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Arvind Kumar
- Computational Science and Technology, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Helmut Schmidt
- Brain Networks Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Thomas R Knösche
- Brain Networks Group, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.,Institute of Biomedical Engineering and Informatics, Department of Computer Science and Automation, Technische Universität Ilmenau, Ilmenau, Germany
| | - Gustavo Deco
- Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain.,Institució Catalana de la Recerca i Estudis Avançats, Barcelona, Spain.,Department of Neuropsychology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.,School of Psychological Sciences, Turner Institute for Brain and Mental Health, Monash University, Melbourne, Australia
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15
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Paquola C, Amunts K, Evans A, Smallwood J, Bernhardt B. Closing the mechanistic gap: the value of microarchitecture in understanding cognitive networks. Trends Cogn Sci 2022; 26:873-886. [PMID: 35909021 DOI: 10.1016/j.tics.2022.07.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 07/05/2022] [Accepted: 07/06/2022] [Indexed: 11/25/2022]
Abstract
Cognitive neuroscience aims to provide biologically relevant accounts of cognition. Contemporary research linking spatial patterns of neural activity to psychological constructs describes 'where' hypothesised functions occur, but not 'how' these regions contribute to cognition. Technological, empirical, and conceptual advances allow this mechanistic gap to be closed by embedding patterns of functional activity in macro- and microscale descriptions of brain organisation. Recent work on the default mode network (DMN) and the multiple demand network (MDN), for example, highlights a microarchitectural landscape that may explain how activity in these networks integrates varied information, thus providing an anatomical foundation that will help to explain how these networks contribute to many different cognitive states. This perspective highlights emerging insights into how microarchitecture can constrain network accounts of human cognition.
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Affiliation(s)
- Casey Paquola
- Institute of Neuroscience and Medicine (INM-1), Forschungszentrum Jülich, Jülich, Germany.
| | - Katrin Amunts
- Institute of Neuroscience and Medicine (INM-1), Forschungszentrum Jülich, Jülich, Germany; Cécile and Oscar Vogt Institute for Brain Research, University Hospital Düsseldorf, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany
| | - Alan Evans
- McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, QC, Canada
| | | | - Boris Bernhardt
- McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, QC, Canada.
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16
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Shamir I, Tomer O, Krupnik R, Assaf Y. Modelling the laminar connectome of the human brain. Brain Struct Funct 2022; 227:2153-2165. [DOI: 10.1007/s00429-022-02513-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 05/22/2022] [Indexed: 12/20/2022]
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17
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Tomer O, Barazany D, Baratz Z, Tsarfaty G, Assaf Y. In vivo measurements of lamination patterns in the human cortex. Hum Brain Mapp 2022; 43:2861-2868. [PMID: 35274794 PMCID: PMC9120563 DOI: 10.1002/hbm.25821] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 02/06/2022] [Accepted: 02/16/2022] [Indexed: 11/22/2022] Open
Abstract
The laminar composition of the cerebral cortex is tightly connected to the development and connectivity of the brain, as well as to function and pathology. Although most of the research on the cortical layers is done with the aid of ex vivo histology, there have been recent attempts to use magnetic resonance imaging (MRI) with potential in vivo applications. However, the high‐resolution MRI technology and protocols required for such studies are neither common nor practical. In this article, we present a clinically feasible method for assessing the laminar properties of the human cortex using standard pulse sequence available on any common MRI scanner. Using a series of low‐resolution inversion recovery (IR) MRI scans allows us to calculate multiple T1 relaxation time constants for each voxel. Based on the whole‐brain T1‐distribution, we identify six different gray matter T1 populations and their variation across the cortex. Based on this, we show age‐related differences in these population and demonstrate that this method is able to capture the difference in laminar composition across varying brain areas. We also provide comparison to ex vivo high‐resolution MRI scans. We show that this method is feasible for the estimation of layer variability across large population cohorts, which can lead to research into the links between the cortical layers and function, behavior and pathologies that was heretofore unexplorable.
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Affiliation(s)
- Omri Tomer
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Daniel Barazany
- The Strauss Center for Computational Neuroimaging, Tel Aviv University, Tel Aviv, Israel
| | - Zvi Baratz
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Galia Tsarfaty
- Division of Diagnostic Imaging, Sheba Medical Center, Tel-Hashomer, Affiliated to the Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel
| | - Yaniv Assaf
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.,The Strauss Center for Computational Neuroimaging, Tel Aviv University, Tel Aviv, Israel.,School of Neurobiology, Biochemistry and Biophysics, Faculty of Life Science, Tel Aviv University, Tel Aviv, Israel
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18
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Tucker DM, Luu P. Motive control of unconscious inference: The limbic base of adaptive Bayes. Neurosci Biobehav Rev 2021; 128:328-345. [PMID: 34129851 DOI: 10.1016/j.neubiorev.2021.05.029] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 05/01/2021] [Accepted: 05/20/2021] [Indexed: 12/31/2022]
Abstract
Current computational models of neocortical processing, described as predictive coding theory, are providing new ways of understanding Helmholtz's classical insight that perception cannot proceed in a data-driven fashion, but instead requires unconscious inference based on prior experience. Predictive coding is a Bayesian process, in which the operations at each lower level of the cortical hierarchy are predicted by prior projections of expectancies from a higher level, and are then updated by error-correction with lower level evidence. To generalize the predictive coding model to the human neocortex as a whole requires aligning the Bayesian negotiation of prior expectancies with sensory and motor evidence not only within the connectional architecture of the neocortex (primary sensory/motor, unimodal association areas, and heteromodal association areas) but also with the limbic cortex that forms the base for the adaptive control of the heteromodal areas and thereby the cerebral hemisphere as a whole. By reviewing the current evidence on the anatomy of the human corticolimbic connectivity (now formalized as the Structural Model) we address the problem of how limbic cortex resonates to the homeostatic, personal significance of events to provide Bayesian priors to organize the operations of predictive coding across the multiple levels of the neocortex. By reviewing both classical evidence and current models of control exerted between limbic and neocortical networks, we suggest a neuropsychological theory of human cognition, the adaptive Bayes process model, in which prior expectancies are not simply rationalized propositions, but rather affectively-charged expectancies that bias the interpretation of sensory data and action affordances to support allostasis, the motive control of expectancies for future events.
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Affiliation(s)
- Don M Tucker
- Brain Electrophysiology Laboratory Company, University of Oregon, United States.
| | - Phan Luu
- Brain Electrophysiology Laboratory Company, University of Oregon, United States
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19
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Romaro C, Najman FA, Lytton WW, Roque AC, Dura-Bernal S. NetPyNE Implementation and Scaling of the Potjans-Diesmann Cortical Microcircuit Model. Neural Comput 2021; 33:1993-2032. [PMID: 34411272 PMCID: PMC8382011 DOI: 10.1162/neco_a_01400] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 02/16/2021] [Indexed: 11/04/2022]
Abstract
The Potjans-Diesmann cortical microcircuit model is a widely used model originally implemented in NEST. Here, we reimplemented the model using NetPyNE, a high-level Python interface to the NEURON simulator, and reproduced the findings of the original publication. We also implemented a method for scaling the network size that preserves first- and second-order statistics, building on existing work on network theory. Our new implementation enabled the use of more detailed neuron models with multicompartmental morphologies and multiple biophysically realistic ion channels. This opens the model to new research, including the study of dendritic processing, the influence of individual channel parameters, the relation to local field potentials, and other multiscale interactions. The scaling method we used provides flexibility to increase or decrease the network size as needed when running these CPU-intensive detailed simulations. Finally, NetPyNE facilitates modifying or extending the model using its declarative language; optimizing model parameters; running efficient, large-scale parallelized simulations; and analyzing the model through built-in methods, including local field potential calculation and information flow measures.
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Affiliation(s)
- Cecilia Romaro
- Department of Physics, School of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo, Ribeirão Preto, SP 14049, Brazil
| | - Fernando Araujo Najman
- Institute of Mathematics and Statistics, University of São Paulo, São Paulo, SP 05508, Brazil
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Health Sciences University, New York, NY 11203, U.S.A.
| | - Antonio C Roque
- Department of Physics, School of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo, Ribeirão Preto, SP 14049, Brazil
| | - Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Health Sciences University, New York, NY 11203, U.S.A., and Nathan Kline Institute for Psychiatric Research, New York, NY 10962, U.S.A.
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20
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Changeux JP, Goulas A, Hilgetag CC. A Connectomic Hypothesis for the Hominization of the Brain. Cereb Cortex 2021; 31:2425-2449. [PMID: 33367521 PMCID: PMC8023825 DOI: 10.1093/cercor/bhaa365] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 10/30/2020] [Accepted: 11/02/2020] [Indexed: 02/06/2023] Open
Abstract
Cognitive abilities of the human brain, including language, have expanded dramatically in the course of our recent evolution from nonhuman primates, despite only minor apparent changes at the gene level. The hypothesis we propose for this paradox relies upon fundamental features of human brain connectivity, which contribute to a characteristic anatomical, functional, and computational neural phenotype, offering a parsimonious framework for connectomic changes taking place upon the human-specific evolution of the genome. Many human connectomic features might be accounted for by substantially increased brain size within the global neural architecture of the primate brain, resulting in a larger number of neurons and areas and the sparsification, increased modularity, and laminar differentiation of cortical connections. The combination of these features with the developmental expansion of upper cortical layers, prolonged postnatal brain development, and multiplied nongenetic interactions with the physical, social, and cultural environment gives rise to categorically human-specific cognitive abilities including the recursivity of language. Thus, a small set of genetic regulatory events affecting quantitative gene expression may plausibly account for the origins of human brain connectivity and cognition.
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Affiliation(s)
- Jean-Pierre Changeux
- CNRS UMR 3571, Institut Pasteur, 75724 Paris, France
- Communications Cellulaires, Collège de France, 75005 Paris, France
| | - Alexandros Goulas
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, 20246 Hamburg, Germany
| | - Claus C Hilgetag
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, 20246 Hamburg, Germany
- Department of Health Sciences, Boston University, Boston, MA 02115, USA
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21
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Multiscale modeling of cortical gradients: The role of mesoscale circuits for linking macro- and microscale gradients of cortical organization and hierarchical information processing. Neuroimage 2021; 232:117846. [PMID: 33636345 DOI: 10.1016/j.neuroimage.2021.117846] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 12/16/2020] [Accepted: 02/04/2021] [Indexed: 11/21/2022] Open
Abstract
The gradient concept in neuroscience describes systematic and continuous progressions of features of cortical organization across the entire cortex. Recent multimodal studies revealed a macroscale gradient from primary sensory to transmodal association areas which is linked to increasing representational abstraction along the cortical hierarchy, and which is paralleled by microscale gradients of cytoarchitecture and gene expression profiles. Convergent or divergent evidence from these multimodal studies is then used to support inferences about the existence of one common or multiple scale-specific gradients of hierarchical information processing. This paper evaluates the validity of such inferences within the framework of multiscale modeling. In branches of physics and biology where multiscale modeling techniques are used, the simple averaging of microscale details can introduce errors in macroscale modeling if it ignores structures at the intermediate mesoscales of organization which affect system behavior. Conversely, information about mesoscale structures can be used to determine which microscale details are actually relevant to macroscale behavior. In this paper, I similarly argue that multiscale modeling of cortical gradients needs to take organization of mesoscale circuits into account if it affects the structure-function relation that the models describe. Information about these circuits provides crucial evidence for evaluating inferences from micro- and macroscale data to the role of cortical gradients in hierarchical information processing. My application of the multiscale modeling framework reveals that the gradient concept tracks multiple overlapping progressions of cortical properties, rather than one overall gradient of hierarchical information processing. I support this argument by proposing a mesoscale gradient of connectivity which describes architectural differences between granular and agranular circuits, and which helps us better understand the relation between neural connectivity and hierarchical information processing.
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22
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A Minimal Biophysical Model of Neocortical Pyramidal Cells: Implications for Frontal Cortex Microcircuitry and Field Potential Generation. J Neurosci 2020; 40:8513-8529. [PMID: 33037076 PMCID: PMC7605414 DOI: 10.1523/jneurosci.0221-20.2020] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 09/08/2020] [Accepted: 09/29/2020] [Indexed: 11/21/2022] Open
Abstract
Ca2+ spikes initiated in the distal trunk of layer 5 pyramidal cells (PCs) underlie nonlinear dynamic changes in the gain of cellular response, critical for top-down control of cortical processing. Detailed models with many compartments and dozens of ionic channels can account for this Ca2+ spike-dependent gain and associated critical frequency. However, current models do not account for all known Ca2+-dependent features. Previous attempts to include more features have required increasing complexity, limiting their interpretability and utility for studying large population dynamics. We overcome these limitations in a minimal two-compartment biophysical model. In our model, a basal-dendrites/somatic compartment included fast-inactivating Na+ and delayed-rectifier K+ conductances, while an apical-dendrites/trunk compartment included persistent Na+, hyperpolarization-activated cation (I h ), slow-inactivating K+, muscarinic K+, and Ca2+ L-type. The model replicated the Ca2+ spike morphology and its critical frequency plus three other defining features of layer 5 PC synaptic integration: linear frequency-current relationships, back-propagation-activated Ca2+ spike firing, and a shift in the critical frequency by blocking I h Simulating 1000 synchronized layer 5 PCs, we reproduced the current source density patterns evoked by Ca2+ spikes and describe resulting medial-frontal EEG on a male macaque monkey. We reproduced changes in the current source density when I h was blocked. Thus, a two-compartment model with five crucial ionic currents in the apical dendrites reproduces all features of these neurons. We discuss the utility of this minimal model to study the microcircuitry of agranular areas of the frontal lobe involved in cognitive control and responsible for event-related potentials, such as the error-related negativity.SIGNIFICANCE STATEMENT A minimal model of layer 5 pyramidal cells replicates all known features crucial for distal synaptic integration in these neurons. By redistributing voltage-gated and returning transmembrane currents in the model, we establish a theoretical framework for the investigation of cortical microcircuit contribution to intracranial local field potentials and EEG. This tractable model will enable biophysical evaluation of multiscale electrophysiological signatures and computational investigation of cortical processing.
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23
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Yamakawa H. Revealing the Computational Meaning of Neocortical Interarea Signals. Front Comput Neurosci 2020; 14:74. [PMID: 33013340 PMCID: PMC7461790 DOI: 10.3389/fncom.2020.00074] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 07/13/2020] [Indexed: 11/13/2022] Open
Abstract
To understand the function of the neocortex, which is a hierarchical distributed network, it is useful giving meaning to the signals transmitted between these areas from the computational viewpoint. The overall anatomical structure or organs related to this network, including the neocortex, thalamus, and basal ganglia, has been roughly revealed, and much physiological knowledge, though often fragmentary, is being accumulated. The computational theories involving the neocortex have also been developed considerably. By introducing the assumption “The signals transmitted by interarea axonal projections of pyramidal cells in the neocortex carry different meanings for each cell type, common to all areas,” derived from its nature as a distributed network in the neocortex, allows us to specify the computational meanings of interarea signals. In this paper, first, the types of signals exchanged between neocortical areas are investigated, taking into account biological constraints, and employing theories such as predictive coding, reinforcement learning, representation emulation theory, and BDI logic as theoretical starting points, two types of feedforward signals (observation and deviation) and three types of feedback signals (prediction, plan, and intention) are identified. Next, based on the anatomical knowledge of the neocortex and thalamus, the pathways connecting the areas are organized and summarized as three corticocortical pathways and two thalamocortical pathways. Using this summation as preparation, this paper proposes a hypothesis that gives meaning to each type of signals transmitted in the different pathways in the neocortex, from the viewpoint of their functions. This hypothesis reckons that the feedforward corticocortical pathway transmits observation signals, the feedback corticocortical pathway transmits prediction signals, and the corticothalamic pathway mediated by core relay cells transmits deviation signals. The thalamocortical pathway, which is mediated by matrix relay cells, would be responsible for transmitting the signals that activate a part of prediction signals as intentions, due to the reason that the nature of the other available feedback pathways are not sufficient for conveying plans and intentions as signals. The corticocortical pathway, which is projected from various IT cells to the first layer, would be responsible for transmitting signals that activate a part of prediction signals as plans.
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Affiliation(s)
- Hiroshi Yamakawa
- University of Tokyo, Tokyo, Japan.,The Whole Brain Architecture Initiative, Edogawa-ku, Japan
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24
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Pina MM, Pati D, Hwa LS, Wu SY, Mahoney AA, Omenyi CG, Navarro M, Kash TL. The kappa opioid receptor modulates GABA neuron excitability and synaptic transmission in midbrainprojections from the insular cortex. Neuropharmacology 2020; 165:107831. [PMID: 31870854 DOI: 10.1016/j.neuropharm.2019.107831] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Revised: 09/08/2019] [Accepted: 10/25/2019] [Indexed: 01/08/2023]
Abstract
As an integrative hub, the insular cortex (IC) translates external cues into interoceptive states that generate complex physiological, affective, and behavioral responses. However, the precise circuit and signaling mechanisms in the IC that modulate these processes are unknown. Here, we describe a midbrain-projecting microcircuit in the medial aspect of the agranular IC that signals through the Gαi/o-coupled kappa opioid receptor (KOR) and its endogenous ligand dynorphin (Dyn). Within this microcircuit, Dyn is robustly expressed in layer 2/3, while KOR is localized to deep layer 5, which sends a long-range projection to the substantia nigra (SN). Using ex vivo electrophysiology, we evaluated the functional impact of KOR signaling in layer 5 of the IC. We found that bath application of dynorphin decreased GABA release and increased glutamate release on IC-SN neurons, but did not alter their excitability. Conversely, dynorphin decreased the excitability of GABA neurons without altering synaptic transmission. Pretreatment with the KOR antagonist nor-BNI blocked the effects of dynorphin in IC-SN neurons and GABA neurons, indicating that the changes in synaptic transmission and excitability were selectively mediated through KOR. Selective inhibition of IC GABA neurons using a KOR-derived DREADD recapitulated these effects. This work provides insight into IC microcircuitry and indicates that Dyn/KOR signaling may act to directly reduce activity of layer 5 GABA neurons. In turn, KOR-driven inhibition of GABA promotes disinhibition of IC-SN neurons, which can modulate downstream circuits. Our findings present a potential mechanism whereby chronic upregulation of IC Dyn/KOR signaling can lead to altered subcortical function and downstream activity.
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Affiliation(s)
- Melanie M Pina
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA; Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, 2751, USA
| | - Dipanwita Pati
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA; Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, 2751, USA
| | - Lara S Hwa
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA; Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, 2751, USA
| | - Sarah Y Wu
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA
| | - Alexandra A Mahoney
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA
| | - Chiazam G Omenyi
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA
| | - Montserrat Navarro
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA; Department of Psychology & Neuroscience, College of Arts and Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Thomas L Kash
- Bowles Center for Alcohol Studies, University of North Carolina at Chapel Hill, 104 Manning Drive, Chapel Hill, NC, 27599, USA; Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, 2751, USA.
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25
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Development and Arealization of the Cerebral Cortex. Neuron 2019; 103:980-1004. [DOI: 10.1016/j.neuron.2019.07.009] [Citation(s) in RCA: 145] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 05/15/2019] [Accepted: 07/03/2019] [Indexed: 12/16/2022]
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26
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Hilgetag CC, Beul SF, van Albada SJ, Goulas A. An architectonic type principle integrates macroscopic cortico-cortical connections with intrinsic cortical circuits of the primate brain. Netw Neurosci 2019; 3:905-923. [PMID: 31637331 PMCID: PMC6777964 DOI: 10.1162/netn_a_00100] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 06/07/2019] [Indexed: 12/31/2022] Open
Abstract
The connections linking neurons within and between cerebral cortical areas form a multiscale network for communication. We review recent work relating essential features of cortico-cortical connections, such as their existence and laminar origins and terminations, to fundamental structural parameters of cortical areas, such as their distance, similarity in cytoarchitecture, defined by lamination or neuronal density, and other macroscopic and microscopic structural features. These analyses demonstrate the presence of an architectonic type principle. Across species and cortices, the essential features of cortico-cortical connections vary consistently and strongly with the cytoarchitectonic similarity of cortical areas. By contrast, in multivariate analyses such relations were not found consistently for distance, similarity of cortical thickness, or cellular morphology. Gradients of laminar cortical differentiation, as reflected in overall neuronal density, also correspond to regional variations of cellular features, forming a spatially ordered natural axis of concerted architectonic and connectional changes across the cortical sheet. The robustness of findings across mammalian brains allows cross-species predictions of the existence and laminar patterns of projections, including estimates for the human brain that are not yet available experimentally. The architectonic type principle integrates cortical connectivity and architecture across scales, with implications for computational explorations of cortical physiology and developmental mechanisms.
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Affiliation(s)
- Claus C Hilgetag
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, Germany
| | - Sarah F Beul
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, Germany
| | - Sacha J van Albada
- Institute of Neuroscience and Medicine (INM-6), Institute for Advanced Simulation (IAS-6), and JARA-Institute of Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Germany
| | - Alexandros Goulas
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, Germany
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27
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Fernández M, Ahumada‐Galleguillos P, Sentis E, Marín G, Mpodozis J. Intratelencephalic projections of the avian visual dorsal ventricular ridge: Laminarly segregated, reciprocally and topographically organized. J Comp Neurol 2019; 528:321-359. [DOI: 10.1002/cne.24757] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 08/07/2019] [Accepted: 08/08/2019] [Indexed: 12/18/2022]
Affiliation(s)
- Máximo Fernández
- Departamento de Biología, Facultad de Ciencias Universidad de Chile Santiago Chile
| | - Patricio Ahumada‐Galleguillos
- Departamento de Biología, Facultad de Ciencias Universidad de Chile Santiago Chile
- Instituto de Ciencias Biomédicas, Facultad de Medicina Universidad de Chile Santiago Chile
| | - Elisa Sentis
- Departamento de Biología, Facultad de Ciencias Universidad de Chile Santiago Chile
| | - Gonzalo Marín
- Departamento de Biología, Facultad de Ciencias Universidad de Chile Santiago Chile
- Facultad de Medicina Universidad Finis Terrae Santiago Chile
| | - Jorge Mpodozis
- Departamento de Biología, Facultad de Ciencias Universidad de Chile Santiago Chile
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28
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Kunze T, Haueisen J, Knösche TR. Emergence of cognitive priming and structure building from the hierarchical interaction of canonical microcircuit models. BIOLOGICAL CYBERNETICS 2019; 113:273-291. [PMID: 30767085 PMCID: PMC6510829 DOI: 10.1007/s00422-019-00792-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 01/18/2019] [Indexed: 06/09/2023]
Abstract
The concept of connectionism states that higher cognitive functions emerge from the interaction of many simple elements. Accordingly, research on canonical microcircuits conceptualizes findings on fundamental neuroanatomical circuits as well as recurrent organizational principles of the cerebral cortex and examines the link between architectures and their associated functionality. In this study, we establish minimal canonical microcircuit models as elements of hierarchical processing networks. Based on a combination of descriptive time simulations and explanatory state-space mappings, we show that minimal canonical microcircuits effectively segregate feedforward and feedback information flows and that feedback information conditions basic processing operations in minimal canonical microcircuits. Further, we derive and examine two prototypical meta-circuits of cooperating minimal canonical microcircuits for the neurocognitive problems of priming and structure building. Through the application of these findings to a language network of syntax parsing, this study embodies neurocognitive research on hierarchical communication in light of canonical microcircuits, cell assembly theory, and predictive coding.
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Affiliation(s)
- Tim Kunze
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
- Institute of Biomedical Engineering and Informatics, Ilmenau University of Technology, Ilmenau, Germany.
| | - Jens Haueisen
- Institute of Biomedical Engineering and Informatics, Ilmenau University of Technology, Ilmenau, Germany
| | - Thomas R Knösche
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
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29
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Peruffo A, Corain L, Bombardi C, Centelleghe C, Grisan E, Graïc JM, Bontempi P, Grandis A, Cozzi B. The motor cortex of the sheep: laminar organization, projections and diffusion tensor imaging of the intracranial pyramidal and extrapyramidal tracts. Brain Struct Funct 2019; 224:1933-1946. [DOI: 10.1007/s00429-019-01885-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2019] [Accepted: 05/03/2019] [Indexed: 02/06/2023]
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30
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Abstract
The primate cerebral cortex displays a hierarchy that extends from primary sensorimotor to association areas, supporting increasingly integrated function underpinned by a gradient of heterogeneity in the brain's microcircuits. The extent to which these hierarchical gradients are unique to primate or may reflect a conserved mammalian principle of brain organization remains unknown. Here we report the topographic similarity of large-scale gradients in cytoarchitecture, gene expression, interneuron cell densities, and long-range axonal connectivity, which vary from primary sensory to prefrontal areas of mouse cortex, highlighting an underappreciated spatial dimension of mouse cortical specialization. Using the T1-weighted:T2-weighted (T1w:T2w) magnetic resonance imaging map as a common spatial reference for comparison across species, we report interspecies agreement in a range of large-scale cortical gradients, including a significant correspondence between gene transcriptional maps in mouse cortex with their human orthologs in human cortex, as well as notable interspecies differences. Our results support the view of systematic structural variation across cortical areas as a core organizational principle that may underlie hierarchical specialization in mammalian brains.
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Affiliation(s)
- Ben D Fulcher
- School of Physics, Sydney University, Sydney, NSW 2006, Australia;
| | - John D Murray
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06511
| | - Valerio Zerbi
- Neural Control of Movement Laboratory, Department of Health Sciences and Technology, Eidgenössische Technische Hochschule Zürich, 8057 Zürich, Switzerland
| | - Xiao-Jing Wang
- Center for Neural Science, New York University, New York, NY 10003;
- Shanghai Research Center for Brain Science and Brain-Inspired Intelligence, Shanghai 201210, China
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31
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Pirone A, Miragliotta V, Cozzi B, Granato A. The Claustrum of the Pig: An Immunohistochemical and a Quantitative Golgi Study. Anat Rec (Hoboken) 2019; 302:1638-1646. [DOI: 10.1002/ar.24073] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Revised: 08/03/2018] [Accepted: 09/25/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Andrea Pirone
- Department of Veterinary SciencesUniversity of Pisa Pisa Italy
| | | | - Bruno Cozzi
- Department of Comparative Biomedicine and Food ScienceUniversity of Padova Legnaro Italy
| | - Alberto Granato
- Department of PsychologyCatholic University of the Sacred Heart Milan Italy
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32
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Shamir I, Tomer O, Baratz Z, Tsarfaty G, Faraggi M, Horowitz A, Assaf Y. A framework for cortical laminar composition analysis using low-resolution T1 MRI images. Brain Struct Funct 2019; 224:1457-1467. [PMID: 30783759 DOI: 10.1007/s00429-019-01848-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 02/11/2019] [Indexed: 10/27/2022]
Abstract
The layer composition of the cerebral cortex represents a unique anatomical fingerprint of brain development, function, connectivity, and pathology. Historically, the cortical layers were investigated solely ex-vivo using histological means, but recent magnetic resonance imaging (MRI) studies suggest that T1 relaxation images can be utilized to separate the layers. Despite technological advancements in the field of high-resolution MRI, accurate estimation of whole-brain cortical laminar composition has remained limited due to partial volume effects, leaving some layers far beyond the image resolution. In this study, we offer a simple and accurate method for cortical laminar composition analysis, resolving partial volume effects and cortical curvature heterogeneity. We use a low-resolution 3T MRI echo planar imaging inversion recovery (EPI IR) scan protocol that provides fast acquisition (~ 12 min) and enables extraction of multiple T1 relaxation time components per voxel, which are assigned to types of brain tissue and utilized to extract the subvoxel composition of six T1 layers. While previous investigation of the layers required the estimation of cortical normals or smoothing of layer widths (similar to VBM), here we developed a sphere-based approach to explore the inner mesoscale architecture of the cortex. Our novel algorithm conducts spatial analysis using volumetric sampling of a system of virtual spheres dispersed throughout the entire cortical space. The methodology offers a robust and powerful framework for quantification and visualization of the cortical laminar structure on the cortical surface, providing a basis for quantitative investigation of its role in cognition, physiology and pathology.
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Affiliation(s)
- Ittai Shamir
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Omri Tomer
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Zvi Baratz
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Galia Tsarfaty
- Department of Diagnostic Imaging, Sheba Medical Center, Tel Hashomer, Ramat Gan, Israel
| | - Maya Faraggi
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Assaf Horowitz
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Yaniv Assaf
- Department of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel. .,Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
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33
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Dell L, Innocenti GM, Hilgetag CC, Manger PR. Cortical and thalamic connectivity of occipital visual cortical areas 17, 18, 19, and 21 of the domestic ferret (
Mustela putorius furo
). J Comp Neurol 2019; 527:1293-1314. [DOI: 10.1002/cne.24631] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 12/19/2018] [Accepted: 01/02/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Leigh‐Anne Dell
- Institute of Computational Neuroscience, University Medical Center Hamburg‐Eppendorf Hamburg Germany
| | - Giorgio M. Innocenti
- Department of NeuroscienceKarolinska Institute Stockholm Sweden
- Brain and Mind InstituteÉcole Polytechnique Fédérale de Lausanne Lausanne Switzerland
| | - Claus C. Hilgetag
- Institute of Computational Neuroscience, University Medical Center Hamburg‐Eppendorf Hamburg Germany
- Department of Health SciencesBoston University Boston Massachusetts
| | - Paul R. Manger
- School of Anatomical Sciences, Faculty of Health Sciences, University of the Witwatersrand Johannesburg South Africa
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34
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Sajad A, Godlove DC, Schall JD. Cortical microcircuitry of performance monitoring. Nat Neurosci 2019; 22:265-274. [PMID: 30643297 PMCID: PMC6348027 DOI: 10.1038/s41593-018-0309-8] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 11/27/2018] [Indexed: 01/17/2023]
Abstract
Medial frontal cortex enables performance monitoring, indexed by the error-related negativity (ERN) and manifest by performance adaptations. In monkeys performing a saccade countermanding (stop signal) task, we recorded EEG over and neural spiking across all layers of the supplementary eye field (SEF), an agranular cortical area. Neurons signaling error production, feedback predicting reward gain or loss, and delivery of fluid reward had different spike widths and were concentrated differently across layers. Neurons signaling error or loss of reward were more common in layers 2 and 3 (L2/3), while neurons signaling gain of reward were more common in layers 5 and 6 (L5/6). Variation of error- and reinforcement-related spike rates in L2/3 but not L5/6 predicted response time adaptation. Variation in error-related spike rate in L2/3 but not L5/6 predicted ERN magnitude. These findings reveal novel features of cortical microcircuitry supporting performance monitoring and confirm one cortical source of the ERN.
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Affiliation(s)
- Amirsaman Sajad
- Department of Psychology, Vanderbilt Vision Research Center, Center for Integrative & Cognitive Neuroscience, Vanderbilt University, Nashville, TN, USA
| | - David C Godlove
- Department of Psychology, Vanderbilt Vision Research Center, Center for Integrative & Cognitive Neuroscience, Vanderbilt University, Nashville, TN, USA
| | - Jeffrey D Schall
- Department of Psychology, Vanderbilt Vision Research Center, Center for Integrative & Cognitive Neuroscience, Vanderbilt University, Nashville, TN, USA.
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35
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The Circuit Motif as a Conceptual Tool for Multilevel Neuroscience. Trends Neurosci 2018; 41:128-136. [PMID: 29397990 DOI: 10.1016/j.tins.2018.01.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Revised: 11/07/2017] [Accepted: 01/04/2018] [Indexed: 11/24/2022]
Abstract
Modern neuroscientific techniques that specifically manipulate and measure neuronal activity in behaving animals now allow bridging of the gap from the cellular to the behavioral level. However, in doing so, they also pose new challenges. Research using incompletely defined manipulations in a high-dimensional space without clear hypotheses is likely to suffer from multiple well-known conceptual and statistical problems. In this context it is essential to develop hypotheses with testable implications across levels. Here we propose that a focus on circuit motifs can help achieve this goal. Viewing neural structures as an assembly of circuit motif building blocks is not new. However, recent tool advances have made it possible to extensively map, specifically manipulate, and quantitatively investigate circuit motifs and thereby reexamine their relevance to brain function.
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36
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Generic dynamic causal modelling: An illustrative application to Parkinson's disease. Neuroimage 2018; 181:818-830. [PMID: 30130648 PMCID: PMC7343527 DOI: 10.1016/j.neuroimage.2018.08.039] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Revised: 08/15/2018] [Accepted: 08/16/2018] [Indexed: 12/26/2022] Open
Abstract
We present a technical development in the dynamic causal modelling of
electrophysiological responses that combines qualitatively different neural mass
models within a single network. This affords the option to couple various
cortical and subcortical nodes that differ in their form and dynamics. Moreover,
it enables users to implement new neural mass models in a straightforward and
standardized way. This generic framework hence supports flexibility and
facilitates the exploration of increasingly plausible models. We illustrate this
by coupling a basal ganglia-thalamus model to a (previously validated) cortical
model developed specifically for motor cortex. The ensuing DCM is used to infer
pathways that contribute to the suppression of beta oscillations induced by
dopaminergic medication in patients with Parkinson's disease.
Experimental recordings were obtained from deep brain stimulation electrodes
(implanted in the subthalamic nucleus) and simultaneous magnetoencephalography.
In line with previous studies, our results indicate a reduction of synaptic
efficacy within the circuit between the subthalamic nucleus and external
pallidum, as well as reduced efficacy in connections of the hyperdirect and
indirect pathway leading to this circuit. This work forms the foundation for a
range of modelling studies of the synaptic mechanisms (and pathophysiology)
underlying event-related potentials and cross-spectral densities.
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37
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Non-Newly Generated, "Immature" Neurons in the Sheep Brain Are Not Restricted to Cerebral Cortex. J Neurosci 2017; 38:826-842. [PMID: 29217680 DOI: 10.1523/jneurosci.1781-17.2017] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Revised: 10/24/2017] [Accepted: 11/16/2017] [Indexed: 12/15/2022] Open
Abstract
A newly proposed form of brain structural plasticity consists of non-newly generated, "immature" neurons of the adult cerebral cortex. Similar to newly generated neurons, these cells express the cytoskeletal protein Doublecortin (DCX), yet they are generated prenatally and then remain in a state of immaturity for long periods. In rodents, the immature neurons are restricted to the paleocortex, whereas in other mammals, they are also found in neocortex. Here, we analyzed the DCX-expressing cells in the whole sheep brain of both sexes to search for an indicator of structural plasticity at a cellular level in a relatively large-brained, long-living mammal. Brains from adult and newborn sheep (injected with BrdU and analyzed at different survival times) were processed for DCX, cell proliferation markers (Ki-67, BrdU), pallial/subpallial developmental origin (Tbr1, Sp8), and neuronal/glial antigens for phenotype characterization. We found immature-like neurons in the whole sheep cortex and in large populations of DCX-expressing cells within the external capsule and the surrounding gray matter (claustrum and amygdala). BrdU and Ki-67 detection at neonatal and adult ages showed that all of these DCX+ cells were generated during embryogenesis, not after birth. These results show that the adult sheep, unlike rodents, is largely endowed with non-newly generated neurons retaining immature features, suggesting that such plasticity might be particularly important in large-brained, long-living mammals.SIGNIFICANCE STATEMENT Brain plasticity is important in adaptation and brain repair. Structural changes span from synaptic plasticity to adult neurogenesis, the latter being highly reduced in large-brained, long-living mammals (e.g., humans). The cerebral cortex contains "immature" neurons, which are generated prenatally and then remain in an undifferentiated state for long periods, being detectable with markers of immaturity. We studied the distribution and developmental origin of these cells in the whole brain of sheep, relatively large-brained, long-living mammals. In addition to the expected cortical location, we also found populations of non-newly generated neurons in several subcortical regions (external capsule, claustrum, and amygdala). These results suggests that non-neurogenic, parenchymal structural plasticity might be more important in large mammals with respect to adult neurogenesis.
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38
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Kunze T, Peterson ADH, Haueisen J, Knösche TR. A model of individualized canonical microcircuits supporting cognitive operations. PLoS One 2017; 12:e0188003. [PMID: 29200435 PMCID: PMC5714354 DOI: 10.1371/journal.pone.0188003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Accepted: 10/25/2017] [Indexed: 12/13/2022] Open
Abstract
Major cognitive functions such as language, memory, and decision-making are thought to rely on distributed networks of a large number of basic elements, called canonical microcircuits. In this theoretical study we propose a novel canonical microcircuit model and find that it supports two basic computational operations: a gating mechanism and working memory. By means of bifurcation analysis we systematically investigate the dynamical behavior of the canonical microcircuit with respect to parameters that govern the local network balance, that is, the relationship between excitation and inhibition, and key intrinsic feedback architectures of canonical microcircuits. We relate the local behavior of the canonical microcircuit to cognitive processing and demonstrate how a network of interacting canonical microcircuits enables the establishment of spatiotemporal sequences in the context of syntax parsing during sentence comprehension. This study provides a framework for using individualized canonical microcircuits for the construction of biologically realistic networks supporting cognitive operations.
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Affiliation(s)
- Tim Kunze
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Institute of Biomedical Engineering and Informatics, Ilmenau University of Technology, Ilmenau, Germany
- * E-mail:
| | | | - Jens Haueisen
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- Institute of Biomedical Engineering and Informatics, Ilmenau University of Technology, Ilmenau, Germany
| | - Thomas R. Knösche
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
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39
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Schmidt M, Bakker R, Hilgetag CC, Diesmann M, van Albada SJ. Multi-scale account of the network structure of macaque visual cortex. Brain Struct Funct 2017; 223:1409-1435. [PMID: 29143946 PMCID: PMC5869897 DOI: 10.1007/s00429-017-1554-4] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 10/24/2017] [Indexed: 12/23/2022]
Abstract
Cortical network structure has been extensively characterized at the level of local circuits and in terms of long-range connectivity, but seldom in a manner that integrates both of these scales. Furthermore, while the connectivity of cortex is known to be related to its architecture, this knowledge has not been used to derive a comprehensive cortical connectivity map. In this study, we integrate data on cortical architecture and axonal tracing data into a consistent multi-scale framework of the structure of one hemisphere of macaque vision-related cortex. The connectivity model predicts the connection probability between any two neurons based on their types and locations within areas and layers. Our analysis reveals regularities of cortical structure. We confirm that cortical thickness decays with cell density. A gradual reduction in neuron density together with the relative constancy of the volume density of synapses across cortical areas yields denser connectivity in visual areas more remote from sensory inputs and of lower structural differentiation. Further, we find a systematic relation between laminar patterns on source and target sides of cortical projections, extending previous findings from combined anterograde and retrograde tracing experiments. Going beyond the classical schemes, we statistically assign synapses to target neurons based on anatomical reconstructions, which suggests that layer 4 neurons receive substantial feedback input. Our derived connectivity exhibits a community structure that corresponds more closely with known functional groupings than previous connectivity maps and identifies layer-specific directional differences in cortico-cortical pathways. The resulting network can form the basis for studies relating structure to neural dynamics in mammalian cortex at multiple scales.
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Affiliation(s)
- Maximilian Schmidt
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (JBI-1 /INM-10), Jülich Research Centre, Jülich, Germany.
| | - Rembrandt Bakker
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (JBI-1 /INM-10), Jülich Research Centre, Jülich, Germany
- Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, Nijmegen, The Netherlands
| | - Claus C Hilgetag
- Institute of Computational Neuroscience, University Medical Center Eppendorf, Hamburg, Germany
- Department of Health Sciences, Boston University, Boston, USA
| | - Markus Diesmann
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (JBI-1 /INM-10), Jülich Research Centre, Jülich, Germany
- Department of Psychiatry, Psychotherapy and Psychosomatics, Medical Faculty, RWTH Aachen University, Aachen, Germany
- Department of Physics, Faculty 1, RWTH Aachen University, Aachen, Germany
| | - Sacha J van Albada
- Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (JBI-1 /INM-10), Jülich Research Centre, Jülich, Germany
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40
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Beul SF, Barbas H, Hilgetag CC. A Predictive Structural Model of the Primate Connectome. Sci Rep 2017; 7:43176. [PMID: 28256558 PMCID: PMC5335700 DOI: 10.1038/srep43176] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 01/23/2017] [Indexed: 11/17/2022] Open
Abstract
Anatomical connectivity imposes strong constraints on brain function, but there is no general agreement about principles that govern its organization. Based on extensive quantitative data, we tested the power of three factors to predict connections of the primate cerebral cortex: architectonic similarity (structural model), spatial proximity (distance model) and thickness similarity (thickness model). Architectonic similarity showed the strongest and most consistent influence on connection features. This parameter was strongly associated with the presence or absence of inter-areal connections and when integrated with spatial distance, the factor allowed predicting the existence of projections with very high accuracy. Moreover, architectonic similarity was strongly related to the laminar pattern of projection origins, and the absolute number of cortical connections of an area. By contrast, cortical thickness similarity and distance were not systematically related to connection features. These findings suggest that cortical architecture provides a general organizing principle for connections in the primate brain, providing further support for the well-corroborated structural model.
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Affiliation(s)
- Sarah F Beul
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Martinistr. 52 - W36, 20246 Hamburg, Germany
| | - Helen Barbas
- Neural Systems Laboratory, Department of Health Sciences, Boston University, 635 Commonwealth Ave., 2215 Boston, MA, USA.,Boston University School of Medicine, Department of Anatomy and Neurobiology, 72 East Concord St., 02118 Boston, MA, USA
| | - Claus C Hilgetag
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Martinistr. 52 - W36, 20246 Hamburg, Germany.,Neural Systems Laboratory, Department of Health Sciences, Boston University, 635 Commonwealth Ave., 2215 Boston, MA, USA
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41
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Layer-specific optogenetic activation of pyramidal neurons causes beta-gamma entrainment of neonatal networks. Nat Commun 2017; 8:14563. [PMID: 28216627 PMCID: PMC5321724 DOI: 10.1038/ncomms14563] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Accepted: 01/12/2017] [Indexed: 12/21/2022] Open
Abstract
Coordinated activity patterns in the developing brain may contribute to the wiring of neuronal circuits underlying future behavioural requirements. However, causal evidence for this hypothesis has been difficult to obtain owing to the absence of tools for selective manipulation of oscillations during early development. We established a protocol that combines optogenetics with electrophysiological recordings from neonatal mice in vivo to elucidate the substrate of early network oscillations in the prefrontal cortex. We show that light-induced activation of layer II/III pyramidal neurons that are transfected by in utero electroporation with a high-efficiency channelrhodopsin drives frequency-specific spiking and boosts network oscillations within beta–gamma frequency range. By contrast, activation of layer V/VI pyramidal neurons causes nonspecific network activation. Thus, entrainment of neonatal prefrontal networks in fast rhythms relies on the activation of layer II/III pyramidal neurons. This approach used here may be useful for further interrogation of developing circuits, and their behavioural readout. Oscillations in cortical activity during development are important for functional maturation. Here, the authors use optogenetics in neonatal mice to determine a causal role for pyramidal cell firing in different prelimbic cortex layers in generating beta–gamma range activity.
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42
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Cozzi B, De Giorgio A, Peruffo A, Montelli S, Panin M, Bombardi C, Grandis A, Pirone A, Zambenedetti P, Corain L, Granato A. The laminar organization of the motor cortex in monodactylous mammals: a comparative assessment based on horse, chimpanzee, and macaque. Brain Struct Funct 2017; 222:2743-2757. [DOI: 10.1007/s00429-017-1369-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 01/12/2017] [Indexed: 11/27/2022]
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Badin AS, Fermani F, Greenfield SA. The Features and Functions of Neuronal Assemblies: Possible Dependency on Mechanisms beyond Synaptic Transmission. Front Neural Circuits 2017; 10:114. [PMID: 28119576 PMCID: PMC5223595 DOI: 10.3389/fncir.2016.00114] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2016] [Accepted: 12/22/2016] [Indexed: 11/13/2022] Open
Abstract
"Neuronal assemblies" are defined here as coalitions within the brain of millions of neurons extending in space up to 1-2 mm, and lasting for hundreds of milliseconds: as such they could potentially link bottom-up, micro-scale with top-down, macro-scale events. The perspective first compares the features in vitro versus in vivo of this underappreciated "meso-scale" level of brain processing, secondly considers the various diverse functions in which assemblies may play a pivotal part, and thirdly analyses whether the surprisingly spatially extensive and prolonged temporal properties of assemblies can be described exclusively in terms of classic synaptic transmission or whether additional, different types of signaling systems are likely to operate. Based on our own voltage-sensitive dye imaging (VSDI) data acquired in vitro we show how restriction to only one signaling process, i.e., synaptic transmission, is unlikely to be adequate for modeling the full profile of assemblies. Based on observations from VSDI with its protracted spatio-temporal scales, we suggest that two other, distinct processes are likely to play a significant role in assembly dynamics: "volume" transmission (the passive diffusion of diverse bioactive transmitters, hormones, and modulators), as well as electrotonic spread via gap junctions. We hypothesize that a combination of all three processes has the greatest potential for deriving a realistic model of assemblies and hence elucidating the various complex brain functions that they may mediate.
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Affiliation(s)
- Antoine-Scott Badin
- Neuro-Bio Ltd., Culham Science CentreAbingdon, UK; Department of Physiology, Anatomy and Genetics, Mann Group, University of OxfordOxford, UK
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Abstract
Predictive coding theories of sensory brain function interpret the hierarchical construction of the cerebral cortex as a Bayesian, generative model capable of predicting the sensory data consistent with any given percept. Predictions are fed backward in the hierarchy and reciprocated by prediction error in the forward direction, acting to modify the representation of the outside world at increasing levels of abstraction, and so to optimize the nature of perception over a series of iterations. This accounts for many ‘illusory’ instances of perception where what is seen (heard, etc.) is unduly influenced by what is expected, based on past experience. This simple conception, the hierarchical exchange of prediction and prediction error, confronts a rich cortical microcircuitry that is yet to be fully documented. This article presents the view that, in the current state of theory and practice, it is profitable to begin a two-way exchange: that predictive coding theory can support an understanding of cortical microcircuit function, and prompt particular aspects of future investigation, whilst existing knowledge of microcircuitry can, in return, influence theoretical development. As an example, a neural inference arising from the earliest formulations of predictive coding is that the source populations of forward and backward pathways should be completely separate, given their functional distinction; this aspect of circuitry – that neurons with extrinsically bifurcating axons do not project in both directions – has only recently been confirmed. Here, the computational architecture prescribed by a generalized (free-energy) formulation of predictive coding is combined with the classic ‘canonical microcircuit’ and the laminar architecture of hierarchical extrinsic connectivity to produce a template schematic, that is further examined in the light of (a) updates in the microcircuitry of primate visual cortex, and (b) rapid technical advances made possible by transgenic neural engineering in the mouse. The exercise highlights a number of recurring themes, amongst them the consideration of interneuron diversity as a spur to theoretical development and the potential for specifying a pyramidal neuron’s function by its individual ‘connectome,’ combining its extrinsic projection (forward, backward or subcortical) with evaluation of its intrinsic network (e.g., unidirectional versus bidirectional connections with other pyramidal neurons).
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Affiliation(s)
- Stewart Shipp
- Laboratory of Visual Perceptual Mechanisms, Institute of Neuroscience, Chinese Academy of SciencesShanghai, China; INSERM U1208, Stem Cell and Brain Research InstituteBron, France; Department of Visual Neuroscience, UCL Institute of OphthalmologyLondon, UK
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Ballarin C, Povinelli M, Granato A, Panin M, Corain L, Peruffo A, Cozzi B. The Brain of the Domestic Bos taurus: Weight, Encephalization and Cerebellar Quotients, and Comparison with Other Domestic and Wild Cetartiodactyla. PLoS One 2016; 11:e0154580. [PMID: 27128674 PMCID: PMC4851379 DOI: 10.1371/journal.pone.0154580] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Accepted: 04/17/2016] [Indexed: 11/18/2022] Open
Abstract
The domestic bovine Bos taurus is raised worldwide for meat and milk production, or even for field work. However the functional anatomy of its central nervous system has received limited attention and most of the reported data in textbooks and reviews are derived from single specimens or relatively old literature. Here we report information on the brain of Bos taurus obtained by sampling 158 individuals, 150 of which at local abattoirs and 8 in the dissecting room, these latter subsequently formalin-fixed. Using body weight and fresh brain weight we calculated the Encephalization Quotient (EQ), and Cerebellar Quotient (CQ). Formalin-fixed brains sampled in the necropsy room were used to calculate the absolute and relative weight of the major components of the brain. The data that we obtained indicate that the domestic bovine Bos taurus possesses a large, convoluted brain, with a slightly lower weight than expected for an animal of its mass. Comparisons with other terrestrial and marine members of the order Cetartiodactyla suggested close similarity with other species with the same feeding adaptations, and with representative baleen whales. On the other hand differences with fish-hunting toothed whales suggest separate evolutionary pathways in brain evolution. Comparison with the other large domestic herbivore Equus caballus (belonging to the order Perissodactyla) indicates that Bos taurus underwent heavier selection of bodily traits, which is also possibly reflected in a comparatively lower EQ than in the horse. The data analyzed suggest that the brain of domestic bovine is potentially interesting for comparative neuroscience studies and may represents an alternative model to investigate neurodegeneration processes.
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Affiliation(s)
- Cristina Ballarin
- Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell’Università 16, 35020 Legnaro (PD), Italy
| | - Michele Povinelli
- Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell’Università 16, 35020 Legnaro (PD), Italy
| | - Alberto Granato
- Department of Psychology, Catholic University of Rome, Largo Gemelli 1, 20100 Milan (MI), Italy
| | - Mattia Panin
- Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell’Università 16, 35020 Legnaro (PD), Italy
| | - Livio Corain
- Department of Management and Engineering, University of Padova, Stradella S. Nicola 3, 36100 Vicenza (VI), Italy
| | - Antonella Peruffo
- Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell’Università 16, 35020 Legnaro (PD), Italy
| | - Bruno Cozzi
- Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell’Università 16, 35020 Legnaro (PD), Italy
- * E-mail:
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The primate connectome in context: Principles of connections of the cortical visual system. Neuroimage 2016; 134:685-702. [PMID: 27083526 DOI: 10.1016/j.neuroimage.2016.04.017] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 03/23/2016] [Accepted: 04/07/2016] [Indexed: 01/13/2023] Open
Abstract
Which principles determine the organization of the intricate network formed by nerve fibers that link the primate cerebral cortex? We addressed this issue for the connections of primate visual cortices by systematically analyzing how the existence or absence of connections, their density as well as laminar patterns of projection origins and terminations are correlated with distance, similarity in cortical type as well as neuronal density or the thickness of cortical areas. Analyses were based on four extensive compilations of qualitative as well as quantitative data for connections of the primate visual cortical system in macaque monkeys (Felleman and Van Essen 1991; Barbas 1986; Barbas and Rempel-Clower 1997; Barone et al. 2000; Markov et al. 2014). Distance and thickness similarity were not consistently correlated with connection features, but similarity of cortical type, determined by qualitative features of laminar differentiation, or measured quantitatively as the areas' overall neuronal density, was a reliable predictor for the existence of connections between areas. Cortical type similarity was also consistently and closely correlated with characteristic laminar connection profiles: structurally dissimilar areas had origin and termination patterns that were biased to the upper or deep cortical layers, while similar areas showed more bilaminar origins and terminations. These results suggest that patterns of corticocortical connections of primate visual cortices are closely linked to the stratified architecture of the cerebral cortex. In particular, the regularity of laminar projection origins and terminations arises from the structural differences between cortical areas. The observed integration of projections with the intrinsic cortical architecture provides a structural basis for advanced theories of cortical organization and function.
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Kozloski J. Closed-Loop Brain Model of Neocortical Information-Based Exchange. Front Neuroanat 2016; 10:3. [PMID: 26834573 PMCID: PMC4716663 DOI: 10.3389/fnana.2016.00003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2015] [Accepted: 01/02/2016] [Indexed: 11/25/2022] Open
Abstract
Here we describe an “information-based exchange” model of brain function that ascribes to neocortex, basal ganglia, and thalamus distinct network functions. The model allows us to analyze whole brain system set point measures, such as the rate and heterogeneity of transitions in striatum and neocortex, in the context of neuromodulation and other perturbations. Our closed-loop model is grounded in neuroanatomical observations, proposing a novel “Grand Loop” through neocortex, and invokes different forms of plasticity at specific tissue interfaces and their principle cell synapses to achieve these transitions. By implementing a system for maximum information-based exchange of action potentials between modeled neocortical areas, we observe changes to these measures in simulation. We hypothesize that similar dynamic set points and modulations exist in the brain's resting state activity, and that different modifications to information-based exchange may shift the risk profile of different component tissues, resulting in different neurodegenerative diseases. This model is targeted for further development using IBM's Neural Tissue Simulator, which allows scalable elaboration of networks, tissues, and their neural and synaptic components toward ever greater complexity and biological realism.
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Affiliation(s)
- James Kozloski
- IBM Research Division, Computational Biology Center, IBM T.J. Watson Research Center Yorktown Heights, NY, USA
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Budd JML, Cuntz H, Eglen SJ, Krieger P. Editorial: Quantitative Analysis of Neuroanatomy. Front Neuroanat 2015; 9:143. [PMID: 26617494 PMCID: PMC4641246 DOI: 10.3389/fnana.2015.00143] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 10/26/2015] [Indexed: 11/13/2022] Open
Affiliation(s)
- Julian M L Budd
- Department of Informatics, School of Engineering and Informatics, University of Sussex Brighton, UK
| | - Hermann Cuntz
- Ernst Strüngmann Institute for Neuroscience in Cooperation with Max Planck Society Frankfurt/Main, Germany ; Frankfurt Institute for Advanced Studies Frankfurt/Main, Germany
| | - Stephen J Eglen
- Department of Applied Mathematics and Theoretical Physics, Cambridge Computational Biology Institute, University of Cambridge Cambridge, UK
| | - Patrik Krieger
- Department of Systems Neuroscience, Medical Faculty, Ruhr University Bochum Bochum, Germany
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Salaj M, Druga R, Cerman J, Kubová H, Barinka F. Calretinin and parvalbumin immunoreactive interneurons in the retrosplenial cortex of the rat brain: Qualitative and quantitative analyses. Brain Res 2015; 1627:201-15. [DOI: 10.1016/j.brainres.2015.09.031] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Revised: 09/20/2015] [Accepted: 09/26/2015] [Indexed: 02/04/2023]
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Rigas P, Adamos DA, Sigalas C, Tsakanikas P, Laskaris NA, Skaliora I. Spontaneous Up states in vitro: a single-metric index of the functional maturation and regional differentiation of the cerebral cortex. Front Neural Circuits 2015; 9:59. [PMID: 26528142 PMCID: PMC4603250 DOI: 10.3389/fncir.2015.00059] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 09/22/2015] [Indexed: 12/12/2022] Open
Abstract
Understanding the development and differentiation of the neocortex remains a central focus of neuroscience. While previous studies have examined isolated aspects of cellular and synaptic organization, an integrated functional index of the cortical microcircuit is still lacking. Here we aimed to provide such an index, in the form of spontaneously recurring periods of persistent network activity -or Up states- recorded in mouse cortical slices. These coordinated network dynamics emerge through the orchestrated regulation of multiple cellular and synaptic elements and represent the default activity of the cortical microcircuit. To explore whether spontaneous Up states can capture developmental changes in intracortical networks we obtained local field potential recordings throughout the mouse lifespan. Two independent and complementary methodologies revealed that Up state activity is systematically modified by age, with the largest changes occurring during early development and adolescence. To explore possible regional heterogeneities we also compared the development of Up states in two distinct cortical areas and show that primary somatosensory cortex develops at a faster pace than primary motor cortex. Our findings suggest that in vitro Up states can serve as a functional index of cortical development and differentiation and can provide a baseline for comparing experimental and/or genetic mouse models.
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Affiliation(s)
- Pavlos Rigas
- Neurophysiology Laboratory, Center for Basic Research, Biomedical Research Foundation of the Academy of AthensAthens, Greece
| | - Dimitrios A. Adamos
- Neuroinformatics Group, Aristotle University of ThessalonikiThessaloniki, Greece
- School of Music Studies, Aristotle University of ThessalonikiThessaloniki, Greece
| | - Charalambos Sigalas
- Neurophysiology Laboratory, Center for Basic Research, Biomedical Research Foundation of the Academy of AthensAthens, Greece
| | - Panagiotis Tsakanikas
- Neurophysiology Laboratory, Center for Basic Research, Biomedical Research Foundation of the Academy of AthensAthens, Greece
| | - Nikolaos A. Laskaris
- Neuroinformatics Group, Aristotle University of ThessalonikiThessaloniki, Greece
- AIIA Lab, Department of Informatics, Aristotle University of ThessalonikiThessaloniki, Greece
| | - Irini Skaliora
- Neurophysiology Laboratory, Center for Basic Research, Biomedical Research Foundation of the Academy of AthensAthens, Greece
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