1
|
Chakravarty S, Delgado-Sallent C, Kane GA, Xia H, Do QH, Senne RA, Scott BB. A cross-species framework for investigating perceptual evidence accumulation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.17.589945. [PMID: 38659929 PMCID: PMC11042372 DOI: 10.1101/2024.04.17.589945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Cross-species studies are important for a comprehensive understanding of brain functions. However, direct quantitative comparison of behaviors across species presents a significant challenge. To enable such comparisons in perceptual decision-making, we developed a synchronized evidence accumulation task for human and non-human animals, by aligning mechanics, stimuli, and training. The task was readily learned by rats, mice and humans, with each species exhibiting qualitatively similar performance. Quantitative model comparison revealed that all three species employed an evidence accumulation strategy, but differed in speed, accuracy, and key decision parameters. Human performance prioritized accuracy, whereas rodent performance was limited by internal time-pressure. Rats optimized reward rate, while mice appeared to switch between evidence accumulation and other strategies trial-to-trial. Together, these results reveal striking similarities and species-specific priorities in decision-making. Furthermore, the synchronized behavioral framework we present may facilitate future studies involving cross-species comparisons, such as evaluating the face validity of animal models of neuropsychiatric disorders. Highlights Development of an evidence accumulation task for rats and miceSynchronized video game allows direct comparisons with humansRat, mouse and human behavior are well fit by the same decision modelsModel parameters reveal species-specific priorities in accumulation strategy.
Collapse
|
2
|
Pan-Vazquez A, Sanchez Araujo Y, McMannon B, Louka M, Bandi A, Haetzel L, Faulkner M, Pillow JW, Daw ND, Witten IB. Pre-existing visual responses in a projection-defined dopamine population explain individual learning trajectories. Curr Biol 2024; 34:5349-5358.e6. [PMID: 39413788 PMCID: PMC11579926 DOI: 10.1016/j.cub.2024.09.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 06/11/2024] [Accepted: 09/17/2024] [Indexed: 10/18/2024]
Abstract
A key challenge of learning a new task is that the environment is high dimensional-there are many different sensory features and possible actions, with typically only a small reward-relevant subset. Although animals can learn to perform complex tasks that involve arbitrary associations between stimuli, actions, and rewards,1,2,3,4,5,6 a consistent and striking result across varied experimental paradigms is that in initially acquiring such tasks, large differences between individuals are apparent in the learning process.7,8,9,10,11,12 What neural mechanisms contribute to initial task acquisition, and why do some individuals learn a new task much more quickly than others? To address these questions, we recorded longitudinally from dopaminergic (DA) axon terminals in mice learning a visual decision-making task.7 Across striatum, DA responses tracked idiosyncratic and side-specific learning trajectories, consistent with widespread reward prediction error coding across DA terminals. However, even before any rewards were delivered, contralateral-side-specific visual responses were present in DA terminals, primarily in the dorsomedial striatum (DMS). These pre-existing responses predicted the extent of learning for contralateral stimuli. Moreover, activation of these terminals improved contralateral performance. Thus, the initial conditions of a projection-specific and feature-specific DA signal help explain individual learning trajectories. More broadly, this work suggests that functional heterogeneity across DA projections may serve to bias target regions toward learning about different subsets of task features, providing a potential mechanism to address the dimensionality of the initial task learning problem.
Collapse
Affiliation(s)
- Alejandro Pan-Vazquez
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Yoel Sanchez Araujo
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Brenna McMannon
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Miranta Louka
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Akhil Bandi
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Laura Haetzel
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Mayo Faulkner
- UCL Institute of Ophthalmology, University College London, 11-43 Bath Street, London EC1V 9EL, UK
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA
| | - Nathaniel D Daw
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA; Department of Psychology, Princeton University, Washington Road, Princeton, NJ 08540, USA.
| | - Ilana B Witten
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA; Howard Hughes Medical Institute, Princeton University, Washington Road, Princeton, NJ 08540, USA.
| |
Collapse
|
3
|
Kane GA, Senne RA, Scott BB. Rat movements reflect internal decision dynamics in an evidence accumulation task. J Neurophysiol 2024; 132:1608-1620. [PMID: 39382979 PMCID: PMC11573272 DOI: 10.1152/jn.00181.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 09/17/2024] [Accepted: 10/02/2024] [Indexed: 10/11/2024] Open
Abstract
Perceptual decision-making involves multiple cognitive processes, including accumulation of sensory evidence, planning, and executing a motor action. How these processes are intertwined is unclear; some models assume that decision-related processes precede motor execution, whereas others propose that movements reflecting ongoing decision processes occur before commitment to a choice. Here we combine two complementary methods to study the relationship between decision processes and the movements leading up to a choice. The first is a free-response pulse-based evidence accumulation task, in which stimuli continue until choice is reported, and the second is a motion-based drift diffusion model (mDDM), in which movement variables from video pose estimation constrain decision parameters on a trial-by-trial basis. We find that the mDDM provides a better fit to rats' decisions in the free-response accumulation task than traditional drift diffusion models. Interestingly, on each trial we observed a period, before choice, that was characterized by head immobility. The length of this period was positively correlated with the rats' decision bounds, and stimuli presented during this period had the greatest impact on choice. Together these results support a model in which internal decision dynamics are reflected in movements and demonstrate that inclusion of movement parameters improves the performance of diffusion-to-bound decision models.NEW & NOTEWORTHY In this study we combine a novel pulse-based evidence accumulation task with a newly developed motion-based drift diffusion model (mDDM). In this model, we incorporate movement parameters derived from high-resolution video data to estimate parameters of the model on a trial-by-trial basis. We find that this new model is an improved description of animal choice behavior.
Collapse
Affiliation(s)
- Gary A Kane
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts, United States
| | - Ryan A Senne
- Graduate Program for Neuroscience, Boston University, Boston, Massachusetts, United States
| | - Benjamin B Scott
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts, United States
| |
Collapse
|
4
|
Khilkevich A, Lohse M, Low R, Orsolic I, Bozic T, Windmill P, Mrsic-Flogel TD. Brain-wide dynamics linking sensation to action during decision-making. Nature 2024; 634:890-900. [PMID: 39261727 PMCID: PMC11499283 DOI: 10.1038/s41586-024-07908-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 08/05/2024] [Indexed: 09/13/2024]
Abstract
Perceptual decisions rely on learned associations between sensory evidence and appropriate actions, involving the filtering and integration of relevant inputs to prepare and execute timely responses1,2. Despite the distributed nature of task-relevant representations3-10, it remains unclear how transformations between sensory input, evidence integration, motor planning and execution are orchestrated across brain areas and dimensions of neural activity. Here we addressed this question by recording brain-wide neural activity in mice learning to report changes in ambiguous visual input. After learning, evidence integration emerged across most brain areas in sparse neural populations that drive movement-preparatory activity. Visual responses evolved from transient activations in sensory areas to sustained representations in frontal-motor cortex, thalamus, basal ganglia, midbrain and cerebellum, enabling parallel evidence accumulation. In areas that accumulate evidence, shared population activity patterns encode visual evidence and movement preparation, distinct from movement-execution dynamics. Activity in movement-preparatory subspace is driven by neurons integrating evidence, which collapses at movement onset, allowing the integration process to reset. Across premotor regions, evidence-integration timescales were independent of intrinsic regional dynamics, and thus depended on task experience. In summary, learning aligns evidence accumulation to action preparation in activity dynamics across dozens of brain regions. This leads to highly distributed and parallelized sensorimotor transformations during decision-making. Our work unifies concepts from decision-making and motor control fields into a brain-wide framework for understanding how sensory evidence controls actions.
Collapse
Affiliation(s)
- Andrei Khilkevich
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK.
| | - Michael Lohse
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK.
| | - Ryan Low
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK
| | - Ivana Orsolic
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK
| | - Tadej Bozic
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK
| | - Paige Windmill
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK
| | - Thomas D Mrsic-Flogel
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK.
| |
Collapse
|
5
|
Lebovich L, Alisch T, Redhead ES, Parker MO, Loewenstein Y, Couzin ID, de Bivort BL. Spatiotemporal dynamics of locomotor decisions in Drosophila melanogaster. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.04.611038. [PMID: 39282352 PMCID: PMC11398310 DOI: 10.1101/2024.09.04.611038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/11/2024]
Abstract
Decision-making in animals often involves choosing actions while navigating the environment, a process markedly different from static decision paradigms commonly studied in laboratory settings. Even in decision-making assays in which animals can freely locomote, decision outcomes are often interpreted as happening at single points in space and single moments in time, a simplification that potentially glosses over important spatiotemporal dynamics. We investigated locomotor decision-making in Drosophila melanogaster in Y-shaped mazes, measuring the extent to which their future choices could be predicted through space and time. We demonstrate that turn-decisions can be reliably predicted from flies' locomotor dynamics, with distinct predictability phases emerging as flies progress through maze regions. We show that these predictability dynamics are not merely the result of maze geometry or wall-following tendencies, but instead reflect the capacity of flies to move in ways that depend on sustained locomotor signatures, suggesting an active, working memory-like process. Additionally, we demonstrate that fly mutants known to have sensory and information-processing deficits exhibit altered spatial predictability patterns, highlighting the role of visual, mechanosensory, and dopaminergic signaling in locomotor decision-making. Finally, highlighting the broad applicability of our analyses, we generalize our findings to other species and tasks. We show that human participants in a virtual Y-maze exhibited similar decision predictability dynamics as flies. This study advances our understanding of decision-making processes, emphasizing the importance of spatial and temporal dynamics of locomotor behavior in the lead-up to discrete choice outcomes.
Collapse
Affiliation(s)
- Lior Lebovich
- Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany
- Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany
- Department of Biology, University of Konstanz, Konstanz, Germany
| | - Tom Alisch
- Department of Organismic & Evolutionary Biology & Center for Brain Science, Harvard University, Cambridge, Massachusetts, U.S.A
| | | | | | - Yonatan Loewenstein
- The Edmond and Lily Safra Center for Brain Sciences, The Alexander Silberman Institute of Life Sciences, Dept. of Cognitive and Brain Sciences and The Federmann Center for the Study of Rationality, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Iain D Couzin
- Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany
- Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Universitätsstraße 10, 78464, Konstanz, Germany
- Department of Biology, University of Konstanz, Konstanz, Germany
| | - Benjamin L de Bivort
- Department of Organismic & Evolutionary Biology & Center for Brain Science, Harvard University, Cambridge, Massachusetts, U.S.A
| |
Collapse
|
6
|
Fritsche M, Majumdar A, Strickland L, Liebana Garcia S, Bogacz R, Lak A. Temporal regularities shape perceptual decisions and striatal dopamine signals. Nat Commun 2024; 15:7093. [PMID: 39154025 PMCID: PMC11330509 DOI: 10.1038/s41467-024-51393-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 08/05/2024] [Indexed: 08/19/2024] Open
Abstract
Perceptual decisions should depend on sensory evidence. However, such decisions are also influenced by past choices and outcomes. These choice history biases may reflect advantageous strategies to exploit temporal regularities of natural environments. However, it is unclear whether and how observers can adapt their choice history biases to different temporal regularities, to exploit the multitude of temporal correlations that exist in nature. Here, we show that male mice adapt their perceptual choice history biases to different temporal regularities of visual stimuli. This adaptation was slow, evolving over hundreds of trials across several days. It occurred alongside a fast non-adaptive choice history bias, limited to a few trials. Both fast and slow trial history effects are well captured by a normative reinforcement learning algorithm with multi-trial belief states, comprising both current trial sensory and previous trial memory states. We demonstrate that dorsal striatal dopamine tracks predictions of the model and behavior, suggesting that striatal dopamine reports reward predictions associated with adaptive choice history biases. Our results reveal the adaptive nature of perceptual choice history biases and shed light on their underlying computational principles and neural correlates.
Collapse
Affiliation(s)
- Matthias Fritsche
- Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, UK.
| | - Antara Majumdar
- Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, UK
| | - Lauren Strickland
- Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, UK
- Institute of Behavioral Neuroscience, University College London, London, UK
| | | | - Rafal Bogacz
- MRC Brain Network Dynamics Unit, University of Oxford, Oxford, UK
| | - Armin Lak
- Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, UK.
| |
Collapse
|
7
|
Lee RS, Sagiv Y, Engelhard B, Witten IB, Daw ND. A feature-specific prediction error model explains dopaminergic heterogeneity. Nat Neurosci 2024; 27:1574-1586. [PMID: 38961229 DOI: 10.1038/s41593-024-01689-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 05/22/2024] [Indexed: 07/05/2024]
Abstract
The hypothesis that midbrain dopamine (DA) neurons broadcast a reward prediction error (RPE) is among the great successes of computational neuroscience. However, recent results contradict a core aspect of this theory: specifically that the neurons convey a scalar, homogeneous signal. While the predominant family of extensions to the RPE model replicates the classic model in multiple parallel circuits, we argue that these models are ill suited to explain reports of heterogeneity in task variable encoding across DA neurons. Instead, we introduce a complementary 'feature-specific RPE' model, positing that individual ventral tegmental area DA neurons report RPEs for different aspects of an animal's moment-to-moment situation. Further, we show how our framework can be extended to explain patterns of heterogeneity in action responses reported among substantia nigra pars compacta DA neurons. This theory reconciles new observations of DA heterogeneity with classic ideas about RPE coding while also providing a new perspective of how the brain performs reinforcement learning in high-dimensional environments.
Collapse
Affiliation(s)
- Rachel S Lee
- Princeton Neuroscience Institute, Princeton, NJ, USA
| | - Yotam Sagiv
- Princeton Neuroscience Institute, Princeton, NJ, USA
| | - Ben Engelhard
- Princeton Neuroscience Institute, Princeton, NJ, USA
| | | | - Nathaniel D Daw
- Princeton Neuroscience Institute, Princeton, NJ, USA.
- Department of Psychology, Princeton University, Princeton, NJ, USA.
| |
Collapse
|
8
|
Jha A, Ashwood ZC, Pillow JW. Active Learning for Discrete Latent Variable Models. Neural Comput 2024; 36:437-474. [PMID: 38363661 DOI: 10.1162/neco_a_01646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 10/13/2023] [Indexed: 02/18/2024]
Abstract
Active learning seeks to reduce the amount of data required to fit the parameters of a model, thus forming an important class of techniques in modern machine learning. However, past work on active learning has largely overlooked latent variable models, which play a vital role in neuroscience, psychology, and a variety of other engineering and scientific disciplines. Here we address this gap by proposing a novel framework for maximum-mutual-information input selection for discrete latent variable regression models. We first apply our method to a class of models known as mixtures of linear regressions (MLR). While it is well known that active learning confers no advantage for linear-gaussian regression models, we use Fisher information to show analytically that active learning can nevertheless achieve large gains for mixtures of such models, and we validate this improvement using both simulations and real-world data. We then consider a powerful class of temporally structured latent variable models given by a hidden Markov model (HMM) with generalized linear model (GLM) observations, which has recently been used to identify discrete states from animal decision-making data. We show that our method substantially reduces the amount of data needed to fit GLM-HMMs and outperforms a variety of approximate methods based on variational and amortized inference. Infomax learning for latent variable models thus offers a powerful approach for characterizing temporally structured latent states, with a wide variety of applications in neuroscience and beyond.
Collapse
Affiliation(s)
- Aditi Jha
- Princeton Neuroscience Institute and Department of Electrical and Computer Engineering, Princeton University, Princeton, NJ 08544, U.S.A.
| | - Zoe C Ashwood
- Princeton Neuroscience Institute and Department of Computer Science, Princeton University, Princeton, NJ 08544, U.S.A.
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, U.S.A.
| |
Collapse
|
9
|
Gupta D, DePasquale B, Kopec CD, Brody CD. Trial-history biases in evidence accumulation can give rise to apparent lapses in decision-making. Nat Commun 2024; 15:662. [PMID: 38253526 PMCID: PMC10803295 DOI: 10.1038/s41467-024-44880-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Accepted: 01/04/2024] [Indexed: 01/24/2024] Open
Abstract
Trial history biases and lapses are two of the most common suboptimalities observed during perceptual decision-making. These suboptimalities are routinely assumed to arise from distinct processes. However, previous work has suggested that they covary in their prevalence and that their proposed neural substrates overlap. Here we demonstrate that during decision-making, history biases and apparent lapses can both arise from a common cognitive process that is optimal under mistaken beliefs that the world is changing i.e. nonstationary. This corresponds to an accumulation-to-bound model with history-dependent updates to the initial state of the accumulator. We test our model's predictions about the relative prevalence of history biases and lapses, and show that they are robustly borne out in two distinct decision-making datasets of male rats, including data from a novel reaction time task. Our model improves the ability to precisely predict decision-making dynamics within and across trials, by positing a process through which agents can generate quasi-stochastic choices.
Collapse
Affiliation(s)
- Diksha Gupta
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Sainsbury Wellcome Centre, University College London, London, UK.
| | - Brian DePasquale
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Department of Biomedical Engineering, Boston University, Boston, MA, USA
| | - Charles D Kopec
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Howard Hughes Medical Institute, Princeton University, Princeton, NJ, USA.
| |
Collapse
|
10
|
Brown LS, Cho JR, Bolkan SS, Nieh EH, Schottdorf M, Tank DW, Brody CD, Witten IB, Goldman MS. Neural circuit models for evidence accumulation through choice-selective sequences. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.01.555612. [PMID: 38234715 PMCID: PMC10793437 DOI: 10.1101/2023.09.01.555612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Decision making is traditionally thought to be mediated by populations of neurons whose firing rates persistently accumulate evidence across time. However, recent decision-making experiments in rodents have observed neurons across the brain that fire sequentially as a function of spatial position or time, rather than persistently, with the subset of neurons in the sequence depending on the animal's choice. We develop two new candidate circuit models, in which evidence is encoded either in the relative firing rates of two competing chains of neurons or in the network location of a stereotyped pattern ("bump") of neural activity. Encoded evidence is then faithfully transferred between neuronal populations representing different positions or times. Neural recordings from four different brain regions during a decision-making task showed that, during the evidence accumulation period, different brain regions displayed tuning curves consistent with different candidate models for evidence accumulation. This work provides mechanistic models and potential neural substrates for how graded-value information may be precisely accumulated within and transferred between neural populations, a set of computations fundamental to many cognitive operations.
Collapse
|
11
|
Tong WL, Iyer A, Murthy VN, Reddy G. Adaptive algorithms for shaping behavior. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.03.569774. [PMID: 38106232 PMCID: PMC10723287 DOI: 10.1101/2023.12.03.569774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
Abstract
Dogs and laboratory mice are commonly trained to perform complex tasks by guiding them through a curriculum of simpler tasks ('shaping'). What are the principles behind effective shaping strategies? Here, we propose a machine learning framework for shaping animal behavior, where an autonomous teacher agent decides its student's task based on the student's transcript of successes and failures on previously assigned tasks. Using autonomous teachers that plan a curriculum in a common sequence learning task, we show that near-optimal shaping algorithms adaptively alternate between simpler and harder tasks to carefully balance reinforcement and extinction. Based on this intuition, we derive an adaptive shaping heuristic with minimal parameters, which we show is near-optimal on the sequence learning task and robustly trains deep reinforcement learning agents on navigation tasks that involve sparse, delayed rewards. Extensions to continuous curricula are explored. Our work provides a starting point towards a general computational framework for shaping animal behavior.
Collapse
Affiliation(s)
- William L. Tong
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
| | | | - Venkatesh N. Murthy
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA and Center for Brain Science, Harvard University, Cambridge, MA, USA
| | - Gautam Reddy
- Physics & Informatics Laboratories, NTT Research, Inc., Sunnyvale, CA, USA and Center for Brain Science, Harvard University, Cambridge, MA, USA
| |
Collapse
|
12
|
Prince SM, Yassine TA, Katragadda N, Roberts TC, Singer AC. New information triggers prospective codes to adapt for flexible navigation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.31.564814. [PMID: 37961524 PMCID: PMC10634986 DOI: 10.1101/2023.10.31.564814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
Navigating a dynamic world requires rapidly updating choices by integrating past experiences with new information. In hippocampus and prefrontal cortex, neural activity representing future goals is theorized to support planning. However, it remains unknown how prospective goal representations incorporate new, pivotal information. Accordingly, we designed a novel task that precisely introduces new information using virtual reality, and we recorded neural activity as mice flexibly adapted their planned destinations. We found that new information triggered increased hippocampal prospective representations of both possible goals; while in prefrontal cortex, new information caused prospective representations of choices to rapidly shift to the new choice. When mice did not flexibly adapt, prefrontal choice codes failed to switch, despite relatively intact hippocampal goal representations. Prospective code updating depended on the commitment to the initial choice and degree of adaptation needed. Thus, we show how prospective codes update with new information to flexibly adapt ongoing navigational plans.
Collapse
Affiliation(s)
- Stephanie M. Prince
- Coulter Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, 30332, United States
| | - Teema A. Yassine
- Coulter Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, 30332, United States
| | - Navya Katragadda
- Coulter Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, 30332, United States
| | - Tyler C. Roberts
- Coulter Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, 30332, United States
| | - Annabelle C. Singer
- Coulter Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA, 30332, United States
| |
Collapse
|
13
|
Kane GA, Senne RA, Scott BB. Rat movements reflect internal decision dynamics in an evidence accumulation task. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.11.556575. [PMID: 37745309 PMCID: PMC10515875 DOI: 10.1101/2023.09.11.556575] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Perceptual decision-making involves multiple cognitive processes, including accumulation of sensory evidence, planning, and executing a motor action. How these processes are intertwined is unclear; some models assume that decision-related processes precede motor execution, whereas others propose that movements reflecting on-going decision processes occur before commitment to a choice. Here we develop and apply two complementary methods to study the relationship between decision processes and the movements leading up to a choice. The first is a free response pulse-based evidence accumulation task, in which stimuli continue until choice is reported. The second is a motion-based drift diffusion model (mDDM), in which movement variables from video pose estimation constrain decision parameters on a trial-by-trial basis. We find the mDDM provides a better model fit to rats' decisions in the free response accumulation task than traditional DDM models. Interestingly, on each trial we observed a period of time, prior to choice, that was characterized by head immobility. The length of this period was positively correlated with the rats' decision bounds and stimuli presented during this period had the greatest impact on choice. Together these results support a model in which internal decision dynamics are reflected in movements and demonstrate that inclusion of movement parameters improves the performance of diffusion-to-bound decision models.
Collapse
Affiliation(s)
- Gary A. Kane
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston MA
| | - Ryan A. Senne
- Graduate Program in Neuroscience, Boston University, Boston MA
| | - Benjamin B. Scott
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston MA
| |
Collapse
|
14
|
Le NM, Yildirim M, Wang Y, Sugihara H, Jazayeri M, Sur M. Mixtures of strategies underlie rodent behavior during reversal learning. PLoS Comput Biol 2023; 19:e1011430. [PMID: 37708113 PMCID: PMC10501641 DOI: 10.1371/journal.pcbi.1011430] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 08/09/2023] [Indexed: 09/16/2023] Open
Abstract
In reversal learning tasks, the behavior of humans and animals is often assumed to be uniform within single experimental sessions to facilitate data analysis and model fitting. However, behavior of agents can display substantial variability in single experimental sessions, as they execute different blocks of trials with different transition dynamics. Here, we observed that in a deterministic reversal learning task, mice display noisy and sub-optimal choice transitions even at the expert stages of learning. We investigated two sources of the sub-optimality in the behavior. First, we found that mice exhibit a high lapse rate during task execution, as they reverted to unrewarded directions after choice transitions. Second, we unexpectedly found that a majority of mice did not execute a uniform strategy, but rather mixed between several behavioral modes with different transition dynamics. We quantified the use of such mixtures with a state-space model, block Hidden Markov Model (block HMM), to dissociate the mixtures of dynamic choice transitions in individual blocks of trials. Additionally, we found that blockHMM transition modes in rodent behavior can be accounted for by two different types of behavioral algorithms, model-free or inference-based learning, that might be used to solve the task. Combining these approaches, we found that mice used a mixture of both exploratory, model-free strategies and deterministic, inference-based behavior in the task, explaining their overall noisy choice sequences. Together, our combined computational approach highlights intrinsic sources of noise in rodent reversal learning behavior and provides a richer description of behavior than conventional techniques, while uncovering the hidden states that underlie the block-by-block transitions.
Collapse
Affiliation(s)
- Nhat Minh Le
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Murat Yildirim
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- Department of Neurosciences, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio, United States of America
| | - Yizhi Wang
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Hiroki Sugihara
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Mehrdad Jazayeri
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Mriganka Sur
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
- Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| |
Collapse
|
15
|
Yun S, Yang B, Anair JD, Martin MM, Fleps SW, Pamukcu A, Yeh NH, Contractor A, Kennedy A, Parker JG. Antipsychotic drug efficacy correlates with the modulation of D1 rather than D2 receptor-expressing striatal projection neurons. Nat Neurosci 2023; 26:1417-1428. [PMID: 37443282 PMCID: PMC10842629 DOI: 10.1038/s41593-023-01390-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 06/16/2023] [Indexed: 07/15/2023]
Abstract
Elevated dopamine transmission in psychosis is assumed to unbalance striatal output through D1- and D2-receptor-expressing spiny-projection neurons (SPNs). Antipsychotic drugs are thought to re-balance this output by blocking D2 receptors (D2Rs). In this study, we found that amphetamine-driven dopamine release unbalanced D1-SPN and D2-SPN Ca2+ activity in mice, but that antipsychotic efficacy was associated with the reversal of abnormal D1-SPN, rather than D2-SPN, dynamics, even for drugs that are D2R selective or lacking any dopamine receptor affinity. By contrast, a clinically ineffective drug normalized D2-SPN dynamics but exacerbated D1-SPN dynamics under hyperdopaminergic conditions. Consistent with antipsychotic effect, selective D1-SPN inhibition attenuated amphetamine-driven changes in locomotion, sensorimotor gating and hallucination-like perception. Notably, antipsychotic efficacy correlated with the selective inhibition of D1-SPNs only under hyperdopaminergic conditions-a dopamine-state-dependence exhibited by D1R partial agonism but not non-antipsychotic D1R antagonists. Our findings provide new insights into antipsychotic drug mechanism and reveal an important role for D1-SPN modulation.
Collapse
Affiliation(s)
- Seongsik Yun
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Ben Yang
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Justin D Anair
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Madison M Martin
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Stefan W Fleps
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Arin Pamukcu
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Nai-Hsing Yeh
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Anis Contractor
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Ann Kennedy
- Department of Neuroscience, Northwestern University, Chicago, IL, USA
| | - Jones G Parker
- Department of Neuroscience, Northwestern University, Chicago, IL, USA.
| |
Collapse
|
16
|
Kira S, Safaai H, Morcos AS, Panzeri S, Harvey CD. A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions. Nat Commun 2023; 14:2121. [PMID: 37055431 PMCID: PMC10102117 DOI: 10.1038/s41467-023-37804-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 03/30/2023] [Indexed: 04/15/2023] Open
Abstract
Decision-making requires flexibility to rapidly switch one's actions in response to sensory stimuli depending on information stored in memory. We identified cortical areas and neural activity patterns underlying this flexibility during virtual navigation, where mice switched navigation toward or away from a visual cue depending on its match to a remembered cue. Optogenetics screening identified V1, posterior parietal cortex (PPC), and retrosplenial cortex (RSC) as necessary for accurate decisions. Calcium imaging revealed neurons that can mediate rapid navigation switches by encoding a mixture of a current and remembered visual cue. These mixed selectivity neurons emerged through task learning and predicted the mouse's choices by forming efficient population codes before correct, but not incorrect, choices. They were distributed across posterior cortex, even V1, and were densest in RSC and sparsest in PPC. We propose flexibility in navigation decisions arises from neurons that mix visual and memory information within a visual-parietal-retrosplenial network.
Collapse
Affiliation(s)
- Shinichiro Kira
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Houman Safaai
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Neural Computation Laboratory, Istituto Italiano di Tecnologia, Rovereto, Italy
| | - Ari S Morcos
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Stefano Panzeri
- Neural Computation Laboratory, Istituto Italiano di Tecnologia, Rovereto, Italy
- Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany
| | | |
Collapse
|
17
|
Diekmann N, Vijayabaskaran S, Zeng X, Kappel D, Menezes MC, Cheng S. CoBeL-RL: A neuroscience-oriented simulation framework for complex behavior and learning. Front Neuroinform 2023; 17:1134405. [PMID: 36970657 PMCID: PMC10033763 DOI: 10.3389/fninf.2023.1134405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 02/17/2023] [Indexed: 03/11/2023] Open
Abstract
Reinforcement learning (RL) has become a popular paradigm for modeling animal behavior, analyzing neuronal representations, and studying their emergence during learning. This development has been fueled by advances in understanding the role of RL in both the brain and artificial intelligence. However, while in machine learning a set of tools and standardized benchmarks facilitate the development of new methods and their comparison to existing ones, in neuroscience, the software infrastructure is much more fragmented. Even if sharing theoretical principles, computational studies rarely share software frameworks, thereby impeding the integration or comparison of different results. Machine learning tools are also difficult to port to computational neuroscience since the experimental requirements are usually not well aligned. To address these challenges we introduce CoBeL-RL, a closed-loop simulator of complex behavior and learning based on RL and deep neural networks. It provides a neuroscience-oriented framework for efficiently setting up and running simulations. CoBeL-RL offers a set of virtual environments, e.g., T-maze and Morris water maze, which can be simulated at different levels of abstraction, e.g., a simple gridworld or a 3D environment with complex visual stimuli, and set up using intuitive GUI tools. A range of RL algorithms, e.g., Dyna-Q and deep Q-network algorithms, is provided and can be easily extended. CoBeL-RL provides tools for monitoring and analyzing behavior and unit activity, and allows for fine-grained control of the simulation via interfaces to relevant points in its closed-loop. In summary, CoBeL-RL fills an important gap in the software toolbox of computational neuroscience.
Collapse
Affiliation(s)
- Nicolas Diekmann
- Faculty for Computer Science, Institute for Neural Computation, Ruhr University Bochum, Bochum, Germany
- International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
| | - Sandhiya Vijayabaskaran
- Faculty for Computer Science, Institute for Neural Computation, Ruhr University Bochum, Bochum, Germany
| | - Xiangshuai Zeng
- Faculty for Computer Science, Institute for Neural Computation, Ruhr University Bochum, Bochum, Germany
- International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
| | - David Kappel
- Faculty for Computer Science, Institute for Neural Computation, Ruhr University Bochum, Bochum, Germany
| | - Matheus Chaves Menezes
- Laboratory of Artificial Cognition Methods for Optimisation and Robotics, Federal University of Maranhão, São Luís, Brazil
| | - Sen Cheng
- Faculty for Computer Science, Institute for Neural Computation, Ruhr University Bochum, Bochum, Germany
- *Correspondence: Sen Cheng
| |
Collapse
|
18
|
Masís J, Chapman T, Rhee JY, Cox DD, Saxe AM. Strategically managing learning during perceptual decision making. eLife 2023; 12:e64978. [PMID: 36786427 PMCID: PMC9928425 DOI: 10.7554/elife.64978] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 01/15/2023] [Indexed: 02/15/2023] Open
Abstract
Making optimal decisions in the face of noise requires balancing short-term speed and accuracy. But a theory of optimality should account for the fact that short-term speed can influence long-term accuracy through learning. Here, we demonstrate that long-term learning is an important dynamical dimension of the speed-accuracy trade-off. We study learning trajectories in rats and formally characterize these dynamics in a theory expressed as both a recurrent neural network and an analytical extension of the drift-diffusion model that learns over time. The model reveals that choosing suboptimal response times to learn faster sacrifices immediate reward, but can lead to greater total reward. We empirically verify predictions of the theory, including a relationship between stimulus exposure and learning speed, and a modulation of reaction time by future learning prospects. We find that rats' strategies approximately maximize total reward over the full learning epoch, suggesting cognitive control over the learning process.
Collapse
Affiliation(s)
- Javier Masís
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Travis Chapman
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Juliana Y Rhee
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - David D Cox
- Department of Molecular and Cellular Biology, Harvard UniversityCambridgeUnited States
- Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Andrew M Saxe
- Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
| |
Collapse
|
19
|
Gupta D, DePasquale B, Kopec CD, Brody CD. Trial-history biases in evidence accumulation can give rise to apparent lapses. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.01.18.524599. [PMID: 36778392 PMCID: PMC9915493 DOI: 10.1101/2023.01.18.524599] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Trial history biases and lapses are two of the most common suboptimalities observed during perceptual decision-making. These suboptimalities are routinely assumed to arise from distinct processes. However, several hints in the literature suggest that they covary in their prevalence and that their proposed neural substrates overlap - what could underlie these links? Here we demonstrate that history biases and apparent lapses can both arise from a common cognitive process that is normative under misbeliefs about non-stationarity in the world. This corresponds to an accumulation-to-bound model with history-dependent updates to the initial state of the accumulator. We test our model's predictions about the relative prevalence of history biases and lapses, and show that they are robustly borne out in two distinct rat decision-making datasets, including data from a novel reaction time task. Our model improves the ability to precisely predict decision-making dynamics within and across trials, by positing a process through which agents can generate quasi-stochastic choices.
Collapse
Affiliation(s)
- Diksha Gupta
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Brian DePasquale
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Charles D Kopec
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
- Howard Hughes Medical Institute, Princeton University, Princeton, United States
| |
Collapse
|
20
|
Do Q, Li Y, Kane GA, McGuire JT, Scott BB. Assessing evidence accumulation and rule learning in humans with an online game. J Neurophysiol 2023; 129:131-143. [PMID: 36475830 DOI: 10.1152/jn.00124.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Evidence accumulation, an essential component of perception and decision making, is frequently studied with psychophysical tasks involving noisy or ambiguous stimuli. In these tasks, participants typically receive verbal or written instructions that describe the strategy that should be used to guide decisions. Although convenient and effective, explicit instructions can influence learning and decision making strategies and can limit comparisons with animal models, in which behaviors are reinforced through feedback. Here, we developed an online video game and nonverbal training pipeline, inspired by pulse-based tasks for rodents, as an alternative to traditional psychophysical tasks used to study evidence accumulation. Using this game, we collected behavioral data from hundreds of participants trained with an explicit description of the decision rule or with experiential feedback. Participants trained with feedback alone learned the game rules rapidly and used strategies and displayed biases similar to those who received explicit instructions. Finally, by leveraging data across hundreds of participants, we show that perceptual judgments were well described by an accumulation process in which noise scaled nonlinearly with evidence, consistent with previous animal studies but inconsistent with diffusion models widely used to describe perceptual decisions in humans. These results challenge the conventional description of the accumulation process and suggest that online games provide a valuable platform to examine perceptual decision making and learning in humans. In addition, the feedback-based training pipeline developed for this game may be useful for evaluating perceptual decision making in human populations with difficulty following verbal instructions.NEW & NOTEWORTHY Perceptual uncertainty sets critical constraints on our ability to accumulate evidence and make decisions; however, its sources remain unclear. We developed a video game, and feedback-based training pipeline, to study uncertainty during decision making. Leveraging choices from hundreds of subjects, we demonstrate that human choices are inconsistent with popular diffusion models of human decision making and instead are best fit by models in which perceptual uncertainty scales nonlinearly with the strength of sensory evidence.
Collapse
Affiliation(s)
- Quan Do
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Yutong Li
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Gary A Kane
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Joseph T McGuire
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| | - Benjamin B Scott
- Department of Psychological and Brain Sciences and Center for Systems Neuroscience, Boston University, Boston, Massachusetts
| |
Collapse
|
21
|
Barkus C, Bergmann C, Branco T, Carandini M, Chadderton PT, Galiñanes GL, Gilmour G, Huber D, Huxter JR, Khan AG, King AJ, Maravall M, O'Mahony T, Ragan CI, Robinson ESJ, Schaefer AT, Schultz SR, Sengpiel F, Prescott MJ. Refinements to rodent head fixation and fluid/food control for neuroscience. J Neurosci Methods 2022; 381:109705. [PMID: 36096238 DOI: 10.1016/j.jneumeth.2022.109705] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 09/01/2022] [Accepted: 09/03/2022] [Indexed: 12/14/2022]
Abstract
The use of head fixation in mice is increasingly common in research, its use having initially been restricted to the field of sensory neuroscience. Head restraint has often been combined with fluid control, rather than food restriction, to motivate behaviour, but this too is now in use for both restrained and non-restrained animals. Despite this, there is little guidance on how best to employ these techniques to optimise both scientific outcomes and animal welfare. This article summarises current practices and provides recommendations to improve animal wellbeing and data quality, based on a survey of the community, literature reviews, and the expert opinion and practical experience of an international working group convened by the UK's National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs). Topics covered include head fixation surgery and post-operative care, habituation to restraint, and the use of fluid/food control to motivate performance. We also discuss some recent developments that may offer alternative ways to collect data from large numbers of behavioural trials without the need for restraint. The aim is to provide support for researchers at all levels, animal care staff, and ethics committees to refine procedures and practices in line with the refinement principle of the 3Rs.
Collapse
Affiliation(s)
- Chris Barkus
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK.
| | | | - Tiago Branco
- Sainsbury Wellcome Centre, University College London, London, UK
| | - Matteo Carandini
- Institute of Ophthalmology, University College London, London, UK
| | - Paul T Chadderton
- School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, UK
| | | | | | - Daniel Huber
- Department of Basic Neurosciences, University of Geneva, Geneva, Switzerland
| | | | - Adil G Khan
- Centre for Developmental Neurobiology, King's College London, London, UK
| | - Andrew J King
- Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
| | - Miguel Maravall
- Sussex Neuroscience, School of Life Sciences, University of Sussex, Brighton, UK
| | - Tina O'Mahony
- Sainsbury Wellcome Centre, University College London, London, UK
| | - C Ian Ragan
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK
| | - Emma S J Robinson
- School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, UK
| | - Andreas T Schaefer
- Sensory Circuits and Neurotechnology Laboratory, The Francis Crick Institute, London, UK; Department of Neuroscience, Physiology & Pharmacology, University College London, London, UK
| | - Simon R Schultz
- Centre for Neurotechnology and Department of Bioengineering, Imperial College London, London, UK
| | | | - Mark J Prescott
- National Centre for Replacement, Refinement and Reduction of Animals in Research (NC3Rs), London, UK
| |
Collapse
|
22
|
Tseng SY, Chettih SN, Arlt C, Barroso-Luque R, Harvey CD. Shared and specialized coding across posterior cortical areas for dynamic navigation decisions. Neuron 2022; 110:2484-2502.e16. [PMID: 35679861 PMCID: PMC9357051 DOI: 10.1016/j.neuron.2022.05.012] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 01/31/2022] [Accepted: 05/13/2022] [Indexed: 11/25/2022]
Abstract
Animals adaptively integrate sensation, planning, and action to navigate toward goal locations in ever-changing environments, but the functional organization of cortex supporting these processes remains unclear. We characterized encoding in approximately 90,000 neurons across the mouse posterior cortex during a virtual navigation task with rule switching. The encoding of task and behavioral variables was highly distributed across cortical areas but differed in magnitude, resulting in three spatial gradients for visual cue, spatial position plus dynamics of choice formation, and locomotion, with peaks respectively in visual, retrosplenial, and parietal cortices. Surprisingly, the conjunctive encoding of these variables in single neurons was similar throughout the posterior cortex, creating high-dimensional representations in all areas instead of revealing computations specialized for each area. We propose that, for guiding navigation decisions, the posterior cortex operates in parallel rather than hierarchically, and collectively generates a state representation of the behavior and environment, with each area specialized in handling distinct information modalities.
Collapse
Affiliation(s)
- Shih-Yi Tseng
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Selmaan N Chettih
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Charlotte Arlt
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | | | | |
Collapse
|
23
|
Alefantis P, Lakshminarasimhan K, Avila E, Noel JP, Pitkow X, Angelaki DE. Sensory Evidence Accumulation Using Optic Flow in a Naturalistic Navigation Task. J Neurosci 2022; 42:5451-5462. [PMID: 35641186 PMCID: PMC9270913 DOI: 10.1523/jneurosci.2203-21.2022] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 04/01/2022] [Accepted: 04/22/2022] [Indexed: 11/21/2022] Open
Abstract
Sensory evidence accumulation is considered a hallmark of decision-making in noisy environments. Integration of sensory inputs has been traditionally studied using passive stimuli, segregating perception from action. Lessons learned from this approach, however, may not generalize to ethological behaviors like navigation, where there is an active interplay between perception and action. We designed a sensory-based sequential decision task in virtual reality in which humans and monkeys navigated to a memorized location by integrating optic flow generated by their own joystick movements. A major challenge in such closed-loop tasks is that subjects' actions will determine future sensory input, causing ambiguity about whether they rely on sensory input rather than expectations based solely on a learned model of the dynamics. To test whether subjects integrated optic flow over time, we used three independent experimental manipulations, unpredictable optic flow perturbations, which pushed subjects off their trajectory; gain manipulation of the joystick controller, which changed the consequences of actions; and manipulation of the optic flow density, which changed the information borne by sensory evidence. Our results suggest that both macaques (male) and humans (female/male) relied heavily on optic flow, thereby demonstrating a critical role for sensory evidence accumulation during naturalistic action-perception closed-loop tasks.SIGNIFICANCE STATEMENT The temporal integration of evidence is a fundamental component of mammalian intelligence. Yet, it has traditionally been studied using experimental paradigms that fail to capture the closed-loop interaction between actions and sensations inherent in real-world continuous behaviors. These conventional paradigms use binary decision tasks and passive stimuli with statistics that remain stationary over time. Instead, we developed a naturalistic visuomotor visual navigation paradigm that mimics the causal structure of real-world sensorimotor interactions and probed the extent to which participants integrate sensory evidence by adding task manipulations that reveal complementary aspects of the computation.
Collapse
Affiliation(s)
- Panos Alefantis
- Center for Neural Science, New York University, New York, New York 10003
| | | | - Eric Avila
- Center for Neural Science, New York University, New York, New York 10003
| | - Jean-Paul Noel
- Center for Neural Science, New York University, New York, New York 10003
| | - Xaq Pitkow
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas 77030
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas 77005-1892
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas 77030
| | - Dora E Angelaki
- Center for Neural Science, New York University, New York, New York 10003
- Tandon School of Engineering, New York University, New York, New York 11201
| |
Collapse
|
24
|
Pinto L, Tank DW, Brody CD. Multiple timescales of sensory-evidence accumulation across the dorsal cortex. eLife 2022; 11:e70263. [PMID: 35708483 PMCID: PMC9203055 DOI: 10.7554/elife.70263] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 05/27/2022] [Indexed: 11/13/2022] Open
Abstract
Cortical areas seem to form a hierarchy of intrinsic timescales, but the relevance of this organization for cognitive behavior remains unknown. In particular, decisions requiring the gradual accrual of sensory evidence over time recruit widespread areas across this hierarchy. Here, we tested the hypothesis that this recruitment is related to the intrinsic integration timescales of these widespread areas. We trained mice to accumulate evidence over seconds while navigating in virtual reality and optogenetically silenced the activity of many cortical areas during different brief trial epochs. We found that the inactivation of all tested areas affected the evidence-accumulation computation. Specifically, we observed distinct changes in the weighting of sensory evidence occurring during and before silencing, such that frontal inactivations led to stronger deficits on long timescales than posterior cortical ones. Inactivation of a subset of frontal areas also led to moderate effects on behavioral processes beyond evidence accumulation. Moreover, large-scale cortical Ca2+ activity during task performance displayed different temporal integration windows. Our findings suggest that the intrinsic timescale hierarchy of distributed cortical areas is an important component of evidence-accumulation mechanisms.
Collapse
Affiliation(s)
- Lucas Pinto
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - David W Tank
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| |
Collapse
|
25
|
Bolkan SS, Stone IR, Pinto L, Ashwood ZC, Iravedra Garcia JM, Herman AL, Singh P, Bandi A, Cox J, Zimmerman CA, Cho JR, Engelhard B, Pillow JW, Witten IB. Opponent control of behavior by dorsomedial striatal pathways depends on task demands and internal state. Nat Neurosci 2022; 25:345-357. [PMID: 35260863 PMCID: PMC8915388 DOI: 10.1038/s41593-022-01021-9] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 01/21/2022] [Indexed: 11/27/2022]
Abstract
A classic view of the striatum holds that activity in direct and indirect pathways oppositely modulates motor output. Whether this involves direct control of movement, or reflects a cognitive process underlying movement, remains unresolved. Here we find that strong, opponent control of behavior by the two pathways of the dorsomedial striatum depends on the cognitive requirements of a task. Furthermore, a latent state model (a hidden Markov model with generalized linear model observations) reveals that-even within a single task-the contribution of the two pathways to behavior is state dependent. Specifically, the two pathways have large contributions in one of two states associated with a strategy of evidence accumulation, compared to a state associated with a strategy of repeating previous choices. Thus, both the demands imposed by a task, as well as the internal state of mice when performing a task, determine whether dorsomedial striatum pathways provide strong and opponent control of behavior.
Collapse
Affiliation(s)
- Scott S Bolkan
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Iris R Stone
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Lucas Pinto
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Zoe C Ashwood
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | | | - Alison L Herman
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Priyanka Singh
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Akhil Bandi
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Julia Cox
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | | | - Jounhong Ryan Cho
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Ben Engelhard
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Department of Psychology, Princeton University, Princeton, NJ, USA.
| | - Ilana B Witten
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
- Department of Psychology, Princeton University, Princeton, NJ, USA.
| |
Collapse
|
26
|
Redish AD, Kepecs A, Anderson LM, Calvin OL, Grissom NM, Haynos AF, Heilbronner SR, Herman AB, Jacob S, Ma S, Vilares I, Vinogradov S, Walters CJ, Widge AS, Zick JL, Zilverstand A. Computational validity: using computation to translate behaviours across species. Philos Trans R Soc Lond B Biol Sci 2022; 377:20200525. [PMID: 34957854 PMCID: PMC8710889 DOI: 10.1098/rstb.2020.0525] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 07/28/2021] [Indexed: 11/12/2022] Open
Abstract
We propose a new conceptual framework (computational validity) for translation across species and populations based on the computational similarity between the information processing underlying parallel tasks. Translating between species depends not on the superficial similarity of the tasks presented, but rather on the computational similarity of the strategies and mechanisms that underlie those behaviours. Computational validity goes beyond construct validity by directly addressing questions of information processing. Computational validity interacts with circuit validity as computation depends on circuits, but similar computations could be accomplished by different circuits. Because different individuals may use different computations to accomplish a given task, computational validity suggests that behaviour should be understood through the subject's point of view; thus, behaviour should be characterized on an individual level rather than a task level. Tasks can constrain the computational algorithms available to a subject and the observed subtleties of that behaviour can provide information about the computations used by each individual. Computational validity has especially high relevance for the study of psychiatric disorders, given the new views of psychiatry as identifying and mediating information processing dysfunctions that may show high inter-individual variability, as well as for animal models investigating aspects of human psychiatric disorders. This article is part of the theme issue 'Systems neuroscience through the lens of evolutionary theory'.
Collapse
Affiliation(s)
- A. David Redish
- Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
| | - Adam Kepecs
- Department of Neuroscience, Washington University in St. Louis, St Louis, MO 63110, USA
- Department of Psychiatry, Washington University in St. Louis, St Louis, MO 63110, USA
| | - Lisa M. Anderson
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Olivia L. Calvin
- Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Nicola M. Grissom
- Department of Psychology, University of Minnesota, Minneapolis, MN 55455, USA
| | - Ann F. Haynos
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | | | - Alexander B. Herman
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Suma Jacob
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Sisi Ma
- Department of Medicine - Institute for Health Informatics, University of Minnesota, Minneapolis, MN 55455, USA
| | - Iris Vilares
- Department of Psychology, University of Minnesota, Minneapolis, MN 55455, USA
| | - Sophia Vinogradov
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Cody J. Walters
- Graduate Program in Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
| | - Alik S. Widge
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Jennifer L. Zick
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| | - Anna Zilverstand
- Department of Psychiatry and Behavioral Sciences, University of Minnesota, Minneapolis, MN 55455, USA
| |
Collapse
|
27
|
Ashwood ZC, Roy NA, Stone IR, Urai AE, Churchland AK, Pouget A, Pillow JW. Mice alternate between discrete strategies during perceptual decision-making. Nat Neurosci 2022; 25:201-212. [PMID: 35132235 PMCID: PMC8890994 DOI: 10.1038/s41593-021-01007-z] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Accepted: 12/17/2021] [Indexed: 12/21/2022]
Abstract
Classical models of perceptual decision-making assume that subjects use a single, consistent strategy to form decisions, or that decision-making strategies evolve slowly over time. Here we present new analyses suggesting that this common view is incorrect. We analyzed data from mouse and human decision-making experiments and found that choice behavior relies on an interplay among multiple interleaved strategies. These strategies, characterized by states in a hidden Markov model, persist for tens to hundreds of trials before switching, and often switch multiple times within a session. The identified decision-making strategies were highly consistent across mice and comprised a single 'engaged' state, in which decisions relied heavily on the sensory stimulus, and several biased states in which errors frequently occurred. These results provide a powerful alternate explanation for 'lapses' often observed in rodent behavioral experiments, and suggest that standard measures of performance mask the presence of major changes in strategy across trials.
Collapse
Affiliation(s)
- Zoe C Ashwood
- Deptartment of Computer Science, Princeton University, Princeton, NJ, USA.
- Princeton Neuroscience Institute, Princeton, NJ, USA.
| | | | - Iris R Stone
- Princeton Neuroscience Institute, Princeton, NJ, USA
| | - Anne E Urai
- Cognitive Psychology Unit, Leiden University, Leiden, Netherlands
| | - Anne K Churchland
- David Geffen School of Medicine, The University of California, Los Angeles, Los Angeles, CA, USA
| | - Alexandre Pouget
- Faculty of Medicine & Deptartment of Basic Neurosciences, University of Geneva, Geneva, Switzerland
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton, NJ, USA.
- Department of Psychology, Princeton University, Princeton, NJ, USA.
| |
Collapse
|
28
|
Koay SA, Charles AS, Thiberge SY, Brody CD, Tank DW. Sequential and efficient neural-population coding of complex task information. Neuron 2021; 110:328-349.e11. [PMID: 34776042 DOI: 10.1016/j.neuron.2021.10.020] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 08/20/2021] [Accepted: 10/13/2021] [Indexed: 11/28/2022]
Abstract
Recent work has highlighted that many types of variables are represented in each neocortical area. How can these many neural representations be organized together without interference and coherently maintained/updated through time? We recorded from excitatory neural populations in posterior cortices as mice performed a complex, dynamic task involving multiple interrelated variables. The neural encoding implied that highly correlated task variables were represented by less-correlated neural population modes, while pairs of neurons exhibited a spectrum of signal correlations. This finding relates to principles of efficient coding, but notably utilizes neural population modes as the encoding unit and suggests partial whitening of task-specific information where different variables are represented with different signal-to-noise levels. Remarkably, this encoding function was multiplexed with sequential neural dynamics yet reliably followed changes in task-variable correlations throughout the trial. We suggest that neural circuits can implement time-dependent encodings in a simple way using random sequential dynamics as a temporal scaffold.
Collapse
Affiliation(s)
- Sue Ann Koay
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA.
| | - Adam S Charles
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
| | - Stephan Y Thiberge
- Bezos Center for Neural Circuit Dynamics, Princeton University, Princeton, NJ 08544, USA
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA; Howard Hughes Medical Institute, Princeton University, Princeton, NJ 08544, USA.
| | - David W Tank
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA; Bezos Center for Neural Circuit Dynamics, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
| |
Collapse
|
29
|
Jeong DC, Kim SSY, Xu JJ, Miller LC. Protean Kinematics: A Blended Model of VR Physics. Front Psychol 2021; 12:705170. [PMID: 34497562 PMCID: PMC8419347 DOI: 10.3389/fpsyg.2021.705170] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 07/29/2021] [Indexed: 11/13/2022] Open
Abstract
Avatar research largely focuses on the effects of the appearance and external characteristics of avatars, but may also warrant further consideration of the effects of avatar movement characteristics. With Protean kinematics, we offer an expansion the avatar-user appearances-based effects of the Proteus Effect to a systematic exploration into the role of movement in affecting social perceptions (about others) and idealized perceptions (about self). This work presents both a theoretical (typology) and methodological (physics-based measurement) approach to understanding the complex blend of physical inputs and virtual outputs that occur in the perceptual experience of VR, particularly in consideration of the collection of hippocampal (e.g., place cells, grid cells) and entorhinal neurons (e.g., speed cells) that fire topologically relative to physical movement in physical space. Offered is a novel method that distills the blend of physical and virtual kinematics to contribute to modern understandings of human-agent interaction and cognitive psychology.
Collapse
Affiliation(s)
- David C Jeong
- Department of Communication, Santa Clara University, Santa Clara, CA, United States
| | - Steffie Sofia Yeonjoo Kim
- Annenberg School for Communication and Journalism, University of Southern California, Los Angeles, CA, United States
| | - Jackie Jingyi Xu
- Annenberg School for Communication and Journalism, University of Southern California, Los Angeles, CA, United States
| | - Lynn C Miller
- Annenberg School for Communication and Journalism, University of Southern California, Los Angeles, CA, United States
| |
Collapse
|
30
|
Lyamzin DR, Aoki R, Abdolrahmani M, Benucci A. Probabilistic discrimination of relative stimulus features in mice. Proc Natl Acad Sci U S A 2021; 118:e2103952118. [PMID: 34301903 PMCID: PMC8325293 DOI: 10.1073/pnas.2103952118] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
During perceptual decision-making, the brain encodes the upcoming decision and the stimulus information in a mixed representation. Paradigms suitable for studying decision computations in isolation rely on stimulus comparisons, with choices depending on relative rather than absolute properties of the stimuli. The adoption of tasks requiring relative perceptual judgments in mice would be advantageous in view of the powerful tools available for the dissection of brain circuits. However, whether and how mice can perform a relative visual discrimination task has not yet been fully established. Here, we show that mice can solve a complex orientation discrimination task in which the choices are decoupled from the orientation of individual stimuli. Moreover, we demonstrate a typical discrimination acuity of 9°, challenging the common belief that mice are poor visual discriminators. We reached these conclusions by introducing a probabilistic choice model that explained behavioral strategies in 40 mice and demonstrated that the circularity of the stimulus space is an additional source of choice variability for trials with fixed difficulty. Furthermore, history biases in the model changed with task engagement, demonstrating behavioral sensitivity to the availability of cognitive resources. In conclusion, our results reveal that mice adopt a diverse set of strategies in a task that decouples decision-relevant information from stimulus-specific information, thus demonstrating their usefulness as an animal model for studying neural representations of relative categories in perceptual decision-making research.
Collapse
Affiliation(s)
- Dmitry R Lyamzin
- RIKEN Center for Brain Science, RIKEN, Wako-shi 351-0198, Japan;
| | - Ryo Aoki
- RIKEN Center for Brain Science, RIKEN, Wako-shi 351-0198, Japan
| | | | - Andrea Benucci
- RIKEN Center for Brain Science, RIKEN, Wako-shi 351-0198, Japan;
- Department of Mathematical Informatics, Graduate School of Information Science and Technology, University of Tokyo, Bunkyo City 113-0032, Japan
| |
Collapse
|
31
|
Nieh EH, Schottdorf M, Freeman NW, Low RJ, Lewallen S, Koay SA, Pinto L, Gauthier JL, Brody CD, Tank DW. Geometry of abstract learned knowledge in the hippocampus. Nature 2021; 595:80-84. [PMID: 34135512 PMCID: PMC9549979 DOI: 10.1038/s41586-021-03652-7] [Citation(s) in RCA: 135] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 05/18/2021] [Indexed: 02/05/2023]
Abstract
Hippocampal neurons encode physical variables1-7 such as space1 or auditory frequency6 in cognitive maps8. In addition, functional magnetic resonance imaging studies in humans have shown that the hippocampus can also encode more abstract, learned variables9-11. However, their integration into existing neural representations of physical variables12,13 is unknown. Here, using two-photon calcium imaging, we show that individual neurons in the dorsal hippocampus jointly encode accumulated evidence with spatial position in mice performing a decision-making task in virtual reality14-16. Nonlinear dimensionality reduction13 showed that population activity was well-described by approximately four to six latent variables, which suggests that neural activity is constrained to a low-dimensional manifold. Within this low-dimensional space, both physical and abstract variables were jointly mapped in an orderly manner, creating a geometric representation that we show is similar across mice. The existence of conjoined cognitive maps suggests that the hippocampus performs a general computation-the creation of task-specific low-dimensional manifolds that contain a geometric representation of learned knowledge.
Collapse
Affiliation(s)
- Edward H. Nieh
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Manuel Schottdorf
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Nicolas W. Freeman
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Ryan J. Low
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Sam Lewallen
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Sue Ann Koay
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Lucas Pinto
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA,Present address: Department of Physiology, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA
| | - Jeffrey L. Gauthier
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Carlos D. Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA,Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA,Howard Hughes Medical Institute, Princeton University, Princeton, NJ, 08544, USA
| | - David W. Tank
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA,Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA,Bezos Center for Neural Dynamics, Princeton University, Princeton, NJ, 08544, USA
| |
Collapse
|
32
|
Aguillon-Rodriguez V, Angelaki D, Bayer H, Bonacchi N, Carandini M, Cazettes F, Chapuis G, Churchland AK, Dan Y, Dewitt E, Faulkner M, Forrest H, Haetzel L, Häusser M, Hofer SB, Hu F, Khanal A, Krasniak C, Laranjeira I, Mainen ZF, Meijer G, Miska NJ, Mrsic-Flogel TD, Murakami M, Noel JP, Pan-Vazquez A, Rossant C, Sanders J, Socha K, Terry R, Urai AE, Vergara H, Wells M, Wilson CJ, Witten IB, Wool LE, Zador AM. Standardized and reproducible measurement of decision-making in mice. eLife 2021; 10:63711. [PMID: 34011433 DOI: 10.1101/2020.01.17.909838] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Accepted: 04/08/2021] [Indexed: 05/25/2023] Open
Abstract
Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements of mouse behavior. Here, we show that a standardized task to probe decision-making in mice produces reproducible results across multiple laboratories. We adopted a task for head-fixed mice that assays perceptual and value-based decision making, and we standardized training protocol and experimental hardware, software, and procedures. We trained 140 mice across seven laboratories in three countries, and we collected 5 million mouse choices into a publicly available database. Learning speed was variable across mice and laboratories, but once training was complete there were no significant differences in behavior across laboratories. Mice in different laboratories adopted similar reliance on visual stimuli, on past successes and failures, and on estimates of stimulus prior probability to guide their choices. These results reveal that a complex mouse behavior can be reproduced across multiple laboratories. They establish a standard for reproducible rodent behavior, and provide an unprecedented dataset and open-access tools to study decision-making in mice. More generally, they indicate a path toward achieving reproducibility in neuroscience through collaborative open-science approaches.
Collapse
Affiliation(s)
| | - Dora Angelaki
- Center for Neural Science, New York University, New York, United States
| | - Hannah Bayer
- Zuckerman Institute, Columbia University, New York, United States
| | | | - Matteo Carandini
- UCL Institute of Ophthalmology, University College London, London, United Kingdom
| | | | - Gaelle Chapuis
- Wolfson Institute for Biomedical Research, University College London, London, United Kingdom
| | | | - Yang Dan
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Eric Dewitt
- Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Mayo Faulkner
- Wolfson Institute for Biomedical Research, University College London, London, United Kingdom
| | - Hamish Forrest
- UCL Institute of Ophthalmology, University College London, London, United Kingdom
| | - Laura Haetzel
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Michael Häusser
- Wolfson Institute for Biomedical Research, University College London, London, United Kingdom
| | - Sonja B Hofer
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom
| | - Fei Hu
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States
| | - Anup Khanal
- Cold Spring Harbor Laboratory, New York, United States
| | - Christopher Krasniak
- Cold Spring Harbor Laboratory, New York, United States
- Watson School of Biological Sciences, New York, United States
| | | | | | - Guido Meijer
- Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Nathaniel J Miska
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom
| | - Thomas D Mrsic-Flogel
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom
| | | | - Jean-Paul Noel
- Center for Neural Science, New York University, New York, United States
| | | | - Cyrille Rossant
- UCL Queen Square Institute of Neurology, University College London, London, United Kingdom
| | | | - Karolina Socha
- UCL Institute of Ophthalmology, University College London, London, United Kingdom
| | - Rebecca Terry
- UCL Queen Square Institute of Neurology, University College London, London, United Kingdom
| | - Anne E Urai
- Cold Spring Harbor Laboratory, New York, United States
- Cognitive Psychology Unit, Leiden University, Leiden, Netherlands
| | - Hernando Vergara
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College London, London, United Kingdom
| | - Miles Wells
- UCL Queen Square Institute of Neurology, University College London, London, United Kingdom
| | | | - Ilana B Witten
- Princeton Neuroscience Institute, Princeton University, Princeton, United States
| | - Lauren E Wool
- UCL Queen Square Institute of Neurology, University College London, London, United Kingdom
| | | |
Collapse
|
33
|
Aguillon-Rodriguez V, Angelaki D, Bayer H, Bonacchi N, Carandini M, Cazettes F, Chapuis G, Churchland AK, Dan Y, Dewitt E, Faulkner M, Forrest H, Haetzel L, Häusser M, Hofer SB, Hu F, Khanal A, Krasniak C, Laranjeira I, Mainen ZF, Meijer G, Miska NJ, Mrsic-Flogel TD, Murakami M, Noel JP, Pan-Vazquez A, Rossant C, Sanders J, Socha K, Terry R, Urai AE, Vergara H, Wells M, Wilson CJ, Witten IB, Wool LE, Zador AM. Standardized and reproducible measurement of decision-making in mice. eLife 2021; 10:e63711. [PMID: 34011433 PMCID: PMC8137147 DOI: 10.7554/elife.63711] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Accepted: 04/08/2021] [Indexed: 12/20/2022] Open
Abstract
Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements of mouse behavior. Here, we show that a standardized task to probe decision-making in mice produces reproducible results across multiple laboratories. We adopted a task for head-fixed mice that assays perceptual and value-based decision making, and we standardized training protocol and experimental hardware, software, and procedures. We trained 140 mice across seven laboratories in three countries, and we collected 5 million mouse choices into a publicly available database. Learning speed was variable across mice and laboratories, but once training was complete there were no significant differences in behavior across laboratories. Mice in different laboratories adopted similar reliance on visual stimuli, on past successes and failures, and on estimates of stimulus prior probability to guide their choices. These results reveal that a complex mouse behavior can be reproduced across multiple laboratories. They establish a standard for reproducible rodent behavior, and provide an unprecedented dataset and open-access tools to study decision-making in mice. More generally, they indicate a path toward achieving reproducibility in neuroscience through collaborative open-science approaches.
Collapse
Affiliation(s)
- The International Brain Laboratory
- Cold Spring Harbor LaboratoryNew YorkUnited States
- Center for Neural Science, New York UniversityNew YorkUnited States
- Zuckerman Institute, Columbia UniversityNew YorkUnited States
- Champalimaud Centre for the UnknownLisbonPortugal
- UCL Institute of Ophthalmology, University College LondonLondonUnited Kingdom
- Wolfson Institute for Biomedical Research, University College LondonLondonUnited Kingdom
- Department of Molecular and Cell Biology, University of California, BerkeleyBerkeleyUnited States
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
- Watson School of Biological SciencesNew YorkUnited States
- UCL Queen Square Institute of Neurology, University College LondonLondonUnited Kingdom
- Sanworks LLCNew YorkUnited States
- Cognitive Psychology Unit, Leiden UniversityLeidenNetherlands
| | | | - Dora Angelaki
- Center for Neural Science, New York UniversityNew YorkUnited States
| | - Hannah Bayer
- Zuckerman Institute, Columbia UniversityNew YorkUnited States
| | | | - Matteo Carandini
- UCL Institute of Ophthalmology, University College LondonLondonUnited Kingdom
| | | | - Gaelle Chapuis
- Wolfson Institute for Biomedical Research, University College LondonLondonUnited Kingdom
| | | | - Yang Dan
- Department of Molecular and Cell Biology, University of California, BerkeleyBerkeleyUnited States
| | - Eric Dewitt
- Champalimaud Centre for the UnknownLisbonPortugal
| | - Mayo Faulkner
- Wolfson Institute for Biomedical Research, University College LondonLondonUnited Kingdom
| | - Hamish Forrest
- UCL Institute of Ophthalmology, University College LondonLondonUnited Kingdom
| | - Laura Haetzel
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Michael Häusser
- Wolfson Institute for Biomedical Research, University College LondonLondonUnited Kingdom
| | - Sonja B Hofer
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
| | - Fei Hu
- Department of Molecular and Cell Biology, University of California, BerkeleyBerkeleyUnited States
| | - Anup Khanal
- Cold Spring Harbor LaboratoryNew YorkUnited States
| | - Christopher Krasniak
- Cold Spring Harbor LaboratoryNew YorkUnited States
- Watson School of Biological SciencesNew YorkUnited States
| | | | | | - Guido Meijer
- Champalimaud Centre for the UnknownLisbonPortugal
| | - Nathaniel J Miska
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
| | - Thomas D Mrsic-Flogel
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
| | | | - Jean-Paul Noel
- Center for Neural Science, New York UniversityNew YorkUnited States
| | | | - Cyrille Rossant
- UCL Queen Square Institute of Neurology, University College LondonLondonUnited Kingdom
| | | | - Karolina Socha
- UCL Institute of Ophthalmology, University College LondonLondonUnited Kingdom
| | - Rebecca Terry
- UCL Queen Square Institute of Neurology, University College LondonLondonUnited Kingdom
| | - Anne E Urai
- Cold Spring Harbor LaboratoryNew YorkUnited States
- Cognitive Psychology Unit, Leiden UniversityLeidenNetherlands
| | - Hernando Vergara
- Sainsbury-Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
| | - Miles Wells
- UCL Queen Square Institute of Neurology, University College LondonLondonUnited Kingdom
| | | | - Ilana B Witten
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Lauren E Wool
- UCL Queen Square Institute of Neurology, University College LondonLondonUnited Kingdom
| | | |
Collapse
|
34
|
Espinoza-Monroy M, de Lafuente V. Discrimination of Regular and Irregular Rhythms Explained by a Time Difference Accumulation Model. Neuroscience 2021; 459:16-26. [PMID: 33549694 DOI: 10.1016/j.neuroscience.2021.01.035] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 01/20/2021] [Accepted: 01/28/2021] [Indexed: 02/07/2023]
Abstract
Perceiving the temporal regularity in a sequence of repetitive sensory events facilitates the preparation and execution of relevant behaviors with tight temporal constraints. How we estimate temporal regularity from repeating patterns of sensory stimuli is not completely understood. We developed a decision-making task in which participants had to decide whether a train of visual, auditory, or tactile pulses, had a regular or an irregular temporal pattern. We tested the hypothesis that subjects categorize stimuli as irregular by accumulating the time differences between the predicted and observed times of sensory pulses defining a temporal rhythm. Results suggest that instead of waiting for a single large temporal deviation, participants accumulate timing-error signals and judge a pattern as irregular when the amount of evidence reaches a decision threshold. Model fits of bounded integration showed that this accumulation occurs with negligible leak of evidence. Consistent with previous findings, we show that participants perform better when evaluating the regularity of auditory pulses, as compared with visual or tactile stimuli. Our results suggest that temporal regularity is estimated by comparing expected and measured pulse onset times, and that each prediction error is accumulated towards a threshold to generate a behavioral choice.
Collapse
Affiliation(s)
- Marisol Espinoza-Monroy
- Instituto de Neurobiología, Universidad Nacional Autónoma de México, Querétaro, QRO 76230, Mexico
| | - Victor de Lafuente
- Instituto de Neurobiología, Universidad Nacional Autónoma de México, Querétaro, QRO 76230, Mexico.
| |
Collapse
|
35
|
Pisupati S, Chartarifsky-Lynn L, Khanal A, Churchland AK. Lapses in perceptual decisions reflect exploration. eLife 2021; 10:55490. [PMID: 33427198 PMCID: PMC7846276 DOI: 10.7554/elife.55490] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Accepted: 01/10/2021] [Indexed: 12/17/2022] Open
Abstract
Perceptual decision-makers often display a constant rate of errors independent of evidence strength. These ‘lapses’ are treated as a nuisance arising from noise tangential to the decision, e.g. inattention or motor errors. Here, we use a multisensory decision task in rats to demonstrate that these explanations cannot account for lapses’ stimulus dependence. We propose a novel explanation: lapses reflect a strategic trade-off between exploiting known rewarding actions and exploring uncertain ones. We tested this model’s predictions by selectively manipulating one action’s reward magnitude or probability. As uniquely predicted by this model, changes were restricted to lapses associated with that action. Finally, we show that lapses are a powerful tool for assigning decision-related computations to neural structures based on disruption experiments (here, posterior striatum and secondary motor cortex). These results suggest that lapses reflect an integral component of decision-making and are informative about action values in normal and disrupted brain states.
Collapse
Affiliation(s)
- Sashank Pisupati
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States.,CSHL School of Biological Sciences, Cold Spring Harbor, New York, United States
| | - Lital Chartarifsky-Lynn
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States.,CSHL School of Biological Sciences, Cold Spring Harbor, New York, United States
| | - Anup Khanal
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States
| | | |
Collapse
|
36
|
Koay SA, Thiberge S, Brody CD, Tank DW. Amplitude modulations of cortical sensory responses in pulsatile evidence accumulation. eLife 2020; 9:e60628. [PMID: 33263278 PMCID: PMC7811404 DOI: 10.7554/elife.60628] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 11/30/2020] [Indexed: 12/27/2022] Open
Abstract
How does the brain internally represent a sequence of sensory information that jointly drives a decision-making behavior? Studies of perceptual decision-making have often assumed that sensory cortices provide noisy but otherwise veridical sensory inputs to downstream processes that accumulate and drive decisions. However, sensory processing in even the earliest sensory cortices can be systematically modified by various external and internal contexts. We recorded from neuronal populations across posterior cortex as mice performed a navigational decision-making task based on accumulating randomly timed pulses of visual evidence. Even in V1, only a small fraction of active neurons had sensory-like responses time-locked to each pulse. Here, we focus on how these 'cue-locked' neurons exhibited a variety of amplitude modulations from sensory to cognitive, notably by choice and accumulated evidence. These task-related modulations affected a large fraction of cue-locked neurons across posterior cortex, suggesting that future models of behavior should account for such influences.
Collapse
Affiliation(s)
- Sue Ann Koay
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Stephan Thiberge
- Bezos Center for Neural Circuit Dynamics, Princeton UniversityPrincetonUnited States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Howard Hughes Medical Institute, Princeton UniversityPrincetonUnited States
| | - David W Tank
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Bezos Center for Neural Circuit Dynamics, Princeton UniversityPrincetonUnited States
| |
Collapse
|
37
|
Biswas T, Bishop WE, Fitzgerald JE. Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings. Curr Opin Neurobiol 2020; 65:138-145. [PMID: 33248437 PMCID: PMC8754199 DOI: 10.1016/j.conb.2020.10.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 10/28/2020] [Accepted: 10/29/2020] [Indexed: 11/24/2022]
Abstract
Modern recording techniques now permit brain-wide sensorimotor circuits to be observed at single neuron resolution in small animals. Extracting theoretical understanding from these recordings requires principles that organize findings and guide future experiments. Here we review theoretical principles that shed light onto brain-wide sensorimotor processing. We begin with an analogy that conceptualizes principles as streetlamps that illuminate the empirical terrain, and we illustrate the analogy by showing how two familiar principles apply in new ways to brain-wide phenomena. We then focus the bulk of the review on describing three more principles that have wide utility for mapping brain-wide neural activity, making testable predictions from highly parameterized mechanistic models, and investigating the computational determinants of neuronal response patterns across the brain.
Collapse
Affiliation(s)
- Tirthabir Biswas
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - William E Bishop
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - James E Fitzgerald
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
| |
Collapse
|
38
|
Mu Y, Narayan S, Mensh BD, Ahrens MB. Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish. Curr Opin Neurobiol 2020; 64:151-160. [PMID: 33091825 DOI: 10.1016/j.conb.2020.08.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 08/25/2020] [Accepted: 08/31/2020] [Indexed: 01/04/2023]
Abstract
The brain is tasked with choosing actions that maximize an animal's chances of survival and reproduction. These choices must be flexible and informed by the current state of the environment, the needs of the body, and the outcomes of past actions. This information is physiologically encoded and processed across different brain regions on a wide range of spatial scales, from molecules in single synapses to networks of brain areas. Uncovering these spatially distributed neural interactions underlying behavior requires investigations that span a similar range of spatial scales. Larval zebrafish, given their small size, transparency, and ease of genetic access, are a good model organism for such investigations, allowing the use of modern microscopy, molecular biology, and computational techniques. These approaches are yielding new insights into the mechanistic basis of behavioral states, which we review here and compare to related studies in mammalian species.
Collapse
Affiliation(s)
- Yu Mu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA; Institute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, and Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai, China.
| | - Sujatha Narayan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Brett D Mensh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Misha B Ahrens
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
| |
Collapse
|
39
|
Gao S, Webb J, Mridha Z, Banta A, Kemere C, McGinley M. Novel Virtual Reality System for Auditory Tasks in Head-fixed Mice. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:2925-2928. [PMID: 33018619 DOI: 10.1109/embc44109.2020.9176536] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
An emerging corpus of research seeks to use virtual realities (VRs) to understand the neural mechanisms underlying spatial navigation and decision making in rodents. These studies have primarily used visual stimuli to represent the virtual world. However, auditory cues play an important role in navigation for animals, especially when the visual system cannot detect objects or predators. We have developed a virtual reality environment defined exclusively by free-field acoustic landmarks for head-fixed mice. We trained animals to run in a virtual environment with 3 acoustic landmarks. We present evidence that they can learn to navigate in our context: we observed anticipatory licking and modest anticipatory slowing preceding the reward region. Furthermore, we found that animals were highly aware of changes in landmark cues: licking behavior changed dramatically when the familiar virtual environment was switched to a novel one, and then rapidly reverted to normal when the familiar virtual environment was re-introduced, all within the same session. Finally, while animals executed the task, we performed in-vivo calcium imaging in the CA1 region of the hippocampus using a modified Miniscope.org system. Our experiments point to a future in which auditory virtual reality can be used to expand our understanding of the neural bases of audition in locomoting animals and the variety of sensory cues which anchor spatial representations in a new virtual environment.
Collapse
|
40
|
Shinn M, Lam NH, Murray JD. A flexible framework for simulating and fitting generalized drift-diffusion models. eLife 2020; 9:56938. [PMID: 32749218 PMCID: PMC7462609 DOI: 10.7554/elife.56938] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Accepted: 08/03/2020] [Indexed: 01/10/2023] Open
Abstract
The drift-diffusion model (DDM) is an important decision-making model in cognitive neuroscience. However, innovations in model form have been limited by methodological challenges. Here, we introduce the generalized drift-diffusion model (GDDM) framework for building and fitting DDM extensions, and provide a software package which implements the framework. The GDDM framework augments traditional DDM parameters through arbitrary user-defined functions. Models are solved numerically by directly solving the Fokker-Planck equation using efficient numerical methods, yielding a 100-fold or greater speedup over standard methodology. This speed allows GDDMs to be fit to data using maximum likelihood on the full response time (RT) distribution. We demonstrate fitting of GDDMs within our framework to both animal and human datasets from perceptual decision-making tasks, with better accuracy and fewer parameters than several DDMs implemented using the latest methodology, to test hypothesized decision-making mechanisms. Overall, our framework will allow for decision-making model innovation and novel experimental designs.
Collapse
Affiliation(s)
- Maxwell Shinn
- Department of Psychiatry, Yale University, New Haven, United States.,Interdepartmental Neuroscience Program, Yale University, New Haven, United States
| | - Norman H Lam
- Department of Physics, Yale University, New Haven, United States
| | - John D Murray
- Department of Psychiatry, Yale University, New Haven, United States.,Interdepartmental Neuroscience Program, Yale University, New Haven, United States.,Department of Physics, Yale University, New Haven, United States
| |
Collapse
|
41
|
Levi AJ, Huk AC. Interpreting temporal dynamics during sensory decision-making. CURRENT OPINION IN PHYSIOLOGY 2020; 16:27-32. [DOI: 10.1016/j.cophys.2020.04.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
|
42
|
Stangl M, Kanitscheider I, Riemer M, Fiete I, Wolbers T. Sources of path integration error in young and aging humans. Nat Commun 2020; 11:2626. [PMID: 32457293 PMCID: PMC7250899 DOI: 10.1038/s41467-020-15805-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 03/20/2020] [Indexed: 01/04/2023] Open
Abstract
Path integration plays a vital role in navigation: it enables the continuous tracking of one's position in space by integrating self-motion cues. Path integration abilities vary widely across individuals, and tend to deteriorate in old age. The specific causes of path integration errors, however, remain poorly characterized. Here, we combine tests of path integration performance in participants of different ages with an analysis based on the Langevin equation for diffusive dynamics, which allows us to decompose errors into distinct causes that can corrupt path integration computations. We show that, across age groups, the dominant error source is unbiased noise that accumulates with travel distance not elapsed time, suggesting that the noise originates in the velocity input rather than within the integrator. Age-related declines are primarily traced to a growth in this noise. These findings shed light on the contributors to path integration error and the mechanisms underlying age-related navigational deficits.
Collapse
Affiliation(s)
- Matthias Stangl
- Department of Psychiatry and Biobehavioral Sciences, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles (UCLA), Los Angeles, CA, USA.
- German Center for Neurodegenerative Diseases (DZNE), Aging & Cognition Research Group, Magdeburg, Germany.
| | - Ingmar Kanitscheider
- Center for Learning and Memory, Department of Neuroscience, The University of Texas, Austin, TX, USA.
- OpenAI, San Francisco, CA, USA.
| | - Martin Riemer
- German Center for Neurodegenerative Diseases (DZNE), Aging & Cognition Research Group, Magdeburg, Germany
- Center for Behavioral Brain Sciences, Magdeburg, Germany
| | - Ila Fiete
- Center for Learning and Memory, Department of Neuroscience, The University of Texas, Austin, TX, USA
- Department of Brain and Cognitive Sciences & McGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA
| | - Thomas Wolbers
- German Center for Neurodegenerative Diseases (DZNE), Aging & Cognition Research Group, Magdeburg, Germany
- Center for Behavioral Brain Sciences, Magdeburg, Germany
| |
Collapse
|
43
|
Lakshminarasimhan KJ, Avila E, Neyhart E, DeAngelis GC, Pitkow X, Angelaki DE. Tracking the Mind's Eye: Primate Gaze Behavior during Virtual Visuomotor Navigation Reflects Belief Dynamics. Neuron 2020; 106:662-674.e5. [PMID: 32171388 PMCID: PMC7323886 DOI: 10.1016/j.neuron.2020.02.023] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 12/24/2019] [Accepted: 02/19/2020] [Indexed: 01/02/2023]
Abstract
To take the best actions, we often need to maintain and update beliefs about variables that cannot be directly observed. To understand the principles underlying such belief updates, we need tools to uncover subjects' belief dynamics from natural behavior. We tested whether eye movements could be used to infer subjects' beliefs about latent variables using a naturalistic navigation task. Humans and monkeys navigated to a remembered goal location in a virtual environment that provided optic flow but lacked explicit position cues. We observed eye movements that appeared to continuously track the goal location even when no visible target was present there. Accurate goal tracking was associated with improved task performance, and inhibiting eye movements in humans impaired navigation precision. These results suggest that gaze dynamics play a key role in action selection during challenging visuomotor behaviors and may possibly serve as a window into the subject's dynamically evolving internal beliefs.
Collapse
Affiliation(s)
- Kaushik J Lakshminarasimhan
- Center for Neural Science, New York University, New York, NY, USA; Center for Theoretical Neuroscience, Columbia University, New York, NY, USA.
| | - Eric Avila
- Center for Neural Science, New York University, New York, NY, USA
| | - Erin Neyhart
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
| | | | - Xaq Pitkow
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA; Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
| | - Dora E Angelaki
- Center for Neural Science, New York University, New York, NY, USA; Tandon School of Engineering, New York University, New York, NY, USA
| |
Collapse
|
44
|
Stine GM, Zylberberg A, Ditterich J, Shadlen MN. Differentiating between integration and non-integration strategies in perceptual decision making. eLife 2020; 9:55365. [PMID: 32338595 PMCID: PMC7217695 DOI: 10.7554/elife.55365] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 04/24/2020] [Indexed: 01/26/2023] Open
Abstract
Many tasks used to study decision-making encourage subjects to integrate evidence over time. Such tasks are useful to understand how the brain operates on multiple samples of information over prolonged timescales, but only if subjects actually integrate evidence to form their decisions. We explored the behavioral observations that corroborate evidence-integration in a number of task-designs. Several commonly accepted signs of integration were also predicted by non-integration strategies. Furthermore, an integration model could fit data generated by non-integration models. We identified the features of non-integration models that allowed them to mimic integration and used these insights to design a motion discrimination task that disentangled the models. In human subjects performing the task, we falsified a non-integration strategy in each and confirmed prolonged integration in all but one subject. The findings illustrate the difficulty of identifying a decision-maker’s strategy and support solutions to achieve this goal.
Collapse
Affiliation(s)
- Gabriel M Stine
- Department of Neuroscience, Columbia University, New York, United States
| | - Ariel Zylberberg
- Mortimer B. Zuckerman Mind Brain Behavior Institute and The Kavli Institute for Brain Science, Columbia University, New York, United States.,Department of Brain and Cognitive Sciences, University of Rochester, Rochester, United States
| | - Jochen Ditterich
- Center for Neuroscience and Department of Neurobiology, Physiology & Behavior, University of California, Davis, United States
| | - Michael N Shadlen
- Department of Neuroscience, Columbia University, New York, United States.,Mortimer B. Zuckerman Mind Brain Behavior Institute and The Kavli Institute for Brain Science, Columbia University, New York, United States.,Howard Hughes Medical Institute, Columbia University, New York, United States
| |
Collapse
|
45
|
Lopatina OL, Morgun AV, Gorina YV, Salmin VV, Salmina AB. Current approaches to modeling the virtual reality in rodents for the assessment of brain plasticity and behavior. J Neurosci Methods 2020; 335:108616. [PMID: 32007483 DOI: 10.1016/j.jneumeth.2020.108616] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 01/28/2020] [Accepted: 01/29/2020] [Indexed: 11/17/2022]
Abstract
Virtual reality (VR) and augmented reality (AR) have become valuable tools to study brains and behaviors resulting in development of new methods of diagnostics and treatment. Neurodegenerаtion is one of the best examples demonstrating efficacy of VR/АR technologies in modern neurology. Development of novel VR systems for rodents and combination of VR tools with up-to-date imaging techniques (i.e. MRI, imaging of neural networks etc.), brain electrophysiology (EEG, patch-clamp), precise analytics (microdialysis) allowed implementing of VR protocols into the animal neurobiology to study brain plasticity, sensorimotor integration, spatial navigation, memory, and decision-making. VR/AR for rodents is а young field of experimental neuroscience and has already provided more consistent testing conditions, less human-animal interaction, opportunities to use a wider variety of experimental parameters. Here we discuss present and future perspectives of using VR/AR to assess brain plasticity, neurogenesis and complex behavior in rodent and human study, and their advantages for translational neuroscience.
Collapse
Affiliation(s)
- Olga L Lopatina
- Department of Biochemistry, Medical, Pharmaceutical, and Toxicological Chemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia; Laboratory for Social Brain Studies, Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia.
| | - Andrey V Morgun
- Department of Biochemistry, Medical, Pharmaceutical, and Toxicological Chemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia; Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia
| | - Yana V Gorina
- Department of Biochemistry, Medical, Pharmaceutical, and Toxicological Chemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia; Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia
| | - Vladimir V Salmin
- Department of Biochemistry, Medical, Pharmaceutical, and Toxicological Chemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia; Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia
| | - Alla B Salmina
- Department of Biochemistry, Medical, Pharmaceutical, and Toxicological Chemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia; Research Institute of Molecular Medicine and Pathobiochemistry, Krasnoyarsk State Medical University Named after Prof. V.F. Voino-Yasenetsky, Krasnoyarsk, Russia
| |
Collapse
|
46
|
Voigts J, Harnett MT. Somatic and Dendritic Encoding of Spatial Variables in Retrosplenial Cortex Differs during 2D Navigation. Neuron 2020; 105:237-245.e4. [PMID: 31759808 PMCID: PMC6981016 DOI: 10.1016/j.neuron.2019.10.016] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 08/14/2019] [Accepted: 10/09/2019] [Indexed: 12/21/2022]
Abstract
Active amplification of organized synaptic inputs in dendrites can endow individual neurons with the ability to perform complex computations. However, whether dendrites in behaving animals perform independent local computations is not known. Such activity may be particularly important for complex behavior, where neurons integrate multiple streams of information. Head-restrained imaging has yielded important insights into cellular and circuit function, but this approach limits behavior and the underlying computations. We describe a method for full-featured 2-photon imaging in awake mice during free locomotion with volitional head rotation. We examine head direction and position encoding in simultaneously imaged apical tuft dendrites and their respective cell bodies in retrosplenial cortex, an area that encodes multi-modal navigational information. Activity in dendrites was not determined solely by somatic activity but reflected distinct navigational variables, fulfilling the requirements for dendritic computation. Our approach provides a foundation for studying sub-cellular processes during complex behaviors.
Collapse
Affiliation(s)
- Jakob Voigts
- Department of Brain & Cognitive Sciences and McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Mark T Harnett
- Department of Brain & Cognitive Sciences and McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| |
Collapse
|
47
|
Ashwood ZC, Roy NA, Bak JH, Pillow JW. Inferring learning rules from animal decision-making. ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 2020; 33:3442-3453. [PMID: 36177341 PMCID: PMC9518972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
How do animals learn? This remains an elusive question in neuroscience. Whereas reinforcement learning often focuses on the design of algorithms that enable artificial agents to efficiently learn new tasks, here we develop a modeling framework to directly infer the empirical learning rules that animals use to acquire new behaviors. Our method efficiently infers the trial-to-trial changes in an animal's policy, and decomposes those changes into a learning component and a noise component. Specifically, this allows us to: (i) compare different learning rules and objective functions that an animal may be using to update its policy; (ii) estimate distinct learning rates for different parameters of an animal's policy; (iii) identify variations in learning across cohorts of animals; and (iv) uncover trial-to-trial changes that are not captured by normative learning rules. After validating our framework on simulated choice data, we applied our model to data from rats and mice learning perceptual decision-making tasks. We found that certain learning rules were far more capable of explaining trial-to-trial changes in an animal's policy. Whereas the average contribution of the conventional REINFORCE learning rule to the policy update for mice learning the International Brain Laboratory's task was just 30%, we found that adding baseline parameters allowed the learning rule to explain 92% of the animals' policy updates under our model. Intriguingly, the best-fitting learning rates and baseline values indicate that an animal's policy update, at each trial, does not occur in the direction that maximizes expected reward. Understanding how an animal transitions from chance-level to high-accuracy performance when learning a new task not only provides neuroscientists with insight into their animals, but also provides concrete examples of biological learning algorithms to the machine learning community.
Collapse
Affiliation(s)
- Zoe C Ashwood
- Princeton Neuroscience Institute, Princeton University
- Dept. of Computer Science, Princeton University
| | | | - Ji Hyun Bak
- Redwood Center for Theoretical Neuroscience, UC Berkeley
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Princeton University
- Dept. of Psychology, Princeton University
| |
Collapse
|
48
|
Pinto L, Rajan K, DePasquale B, Thiberge SY, Tank DW, Brody CD. Task-Dependent Changes in the Large-Scale Dynamics and Necessity of Cortical Regions. Neuron 2019; 104:810-824.e9. [PMID: 31564591 PMCID: PMC7036751 DOI: 10.1016/j.neuron.2019.08.025] [Citation(s) in RCA: 137] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 06/18/2019] [Accepted: 08/13/2019] [Indexed: 12/15/2022]
Abstract
Neural activity throughout the cortex is correlated with perceptual decisions, but inactivation studies suggest that only a small number of areas are necessary for these behaviors. Here we show that the number of required cortical areas and their dynamics vary across related tasks with different cognitive computations. In a visually guided virtual T-maze task, bilateral inactivation of only a few dorsal cortical regions impaired performance. In contrast, in tasks requiring evidence accumulation and/or post-stimulus memory, performance was impaired by inactivation of widespread cortical areas with diverse patterns of behavioral deficits across areas and tasks. Wide-field imaging revealed widespread ramps of Ca2+ activity during the accumulation and visually guided tasks. Additionally, during accumulation, different regions had more diverse activity profiles, leading to reduced inter-area correlations. Using a modular recurrent neural network model trained to perform analogous tasks, we argue that differences in computational strategies alone could explain these findings.
Collapse
Affiliation(s)
- Lucas Pinto
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
| | - Kanaka Rajan
- Joseph Henry Laboratories of Physics and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA; Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY 10014, USA
| | - Brian DePasquale
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
| | - Stephan Y Thiberge
- Bezos Center for Neural Dynamics, Princeton University, Princeton, NJ 08544, USA
| | - David W Tank
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA; Bezos Center for Neural Dynamics, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA; Howard Hughes Medical Institute, Princeton University, Princeton, NJ 08544, USA.
| |
Collapse
|
49
|
Deverett B, Kislin M, Tank DW, Wang SSH. Cerebellar disruption impairs working memory during evidence accumulation. Nat Commun 2019; 10:3128. [PMID: 31311934 PMCID: PMC6635393 DOI: 10.1038/s41467-019-11050-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 06/17/2019] [Indexed: 11/29/2022] Open
Abstract
To select actions based on sensory evidence, animals must create and manipulate representations of stimulus information in memory. Here we report that during accumulation of somatosensory evidence, optogenetic manipulation of cerebellar Purkinje cells reduces the accuracy of subsequent memory-guided decisions and causes mice to downweight prior information. Behavioral deficits are consistent with the addition of noise and leak to the evidence accumulation process. We conclude that the cerebellum can influence the accurate maintenance of working memory.
Collapse
Affiliation(s)
- Ben Deverett
- Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
- Rutgers Robert Wood Johnson Medical School, Piscataway, NJ, 08854, USA
| | - Mikhail Kislin
- Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - David W Tank
- Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA
| | - Samuel S-H Wang
- Neuroscience Institute, Princeton University, Princeton, NJ, 08544, USA.
| |
Collapse
|
50
|
Mu Y, Bennett DV, Rubinov M, Narayan S, Yang CT, Tanimoto M, Mensh BD, Looger LL, Ahrens MB. Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell 2019; 178:27-43.e19. [PMID: 31230713 DOI: 10.1016/j.cell.2019.05.050] [Citation(s) in RCA: 152] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 01/31/2019] [Accepted: 05/23/2019] [Indexed: 11/29/2022]
Abstract
When a behavior repeatedly fails to achieve its goal, animals often give up and become passive, which can be strategic for preserving energy or regrouping between attempts. It is unknown how the brain identifies behavioral failures and mediates this behavioral-state switch. In larval zebrafish swimming in virtual reality, visual feedback can be withheld so that swim attempts fail to trigger expected visual flow. After tens of seconds of such motor futility, animals became passive for similar durations. Whole-brain calcium imaging revealed noradrenergic neurons that responded specifically to failed swim attempts and radial astrocytes whose calcium levels accumulated with increasing numbers of failed attempts. Using cell ablation and optogenetic or chemogenetic activation, we found that noradrenergic neurons progressively activated brainstem radial astrocytes, which then suppressed swimming. Thus, radial astrocytes perform a computation critical for behavior: they accumulate evidence that current actions are ineffective and consequently drive changes in behavioral states. VIDEO ABSTRACT.
Collapse
Affiliation(s)
- Yu Mu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
| | - Davis V Bennett
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA
| | - Mikail Rubinov
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA
| | - Sujatha Narayan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Chao-Tsung Yang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Masashi Tanimoto
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Brett D Mensh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Loren L Looger
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Misha B Ahrens
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
| |
Collapse
|