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Tariq A, Sardans J, Zeng F, Graciano C, Hughes AC, Farré-Armengol G, Peñuelas J. Impact of aridity rise and arid lands expansion on carbon-storing capacity, biodiversity loss, and ecosystem services. GLOBAL CHANGE BIOLOGY 2024; 30:e17292. [PMID: 38634556 DOI: 10.1111/gcb.17292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 04/04/2024] [Indexed: 04/19/2024]
Abstract
Drylands, comprising semi-arid, arid, and hyperarid regions, cover approximately 41% of the Earth's land surface and have expanded considerably in recent decades. Even under more optimistic scenarios, such as limiting global temperature rise to 1.5°C by 2100, semi-arid lands may increase by up to 38%. This study provides an overview of the state-of-the-art regarding changing aridity in arid regions, with a specific focus on its effects on the accumulation and availability of carbon (C), nitrogen (N), and phosphorus (P) in plant-soil systems. Additionally, we summarized the impacts of rising aridity on biodiversity, service provisioning, and feedback effects on climate change across scales. The expansion of arid ecosystems is linked to a decline in C and nutrient stocks, plant community biomass and diversity, thereby diminishing the capacity for recovery and maintaining adequate water-use efficiency by plants and microbes. Prolonged drought led to a -3.3% reduction in soil organic carbon (SOC) content (based on 148 drought-manipulation studies), a -8.7% decrease in plant litter input, a -13.0% decline in absolute litter decomposition, and a -5.7% decrease in litter decomposition rate. Moreover, a substantial positive feedback loop with global warming exists, primarily due to increased albedo. The loss of critical ecosystem services, including food production capacity and water resources, poses a severe challenge to the inhabitants of these regions. Increased aridity reduces SOC, nutrient, and water content. Aridity expansion and intensification exacerbate socio-economic disparities between economically rich and least developed countries, with significant opportunities for improvement through substantial investments in infrastructure and technology. By 2100, half the world's landmass may become dryland, characterized by severe conditions marked by limited C, N, and P resources, water scarcity, and substantial loss of native species biodiversity. These conditions pose formidable challenges for maintaining essential services, impacting human well-being and raising complex global and regional socio-political challenges.
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Affiliation(s)
- Akash Tariq
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, China
- University of Chinese Academy of Sciences, Beijing, China
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Jordi Sardans
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Fanjiang Zeng
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Corina Graciano
- Instituto de Fisiología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de La Plata, Buenos Aires, Argentina
| | - Alice C Hughes
- School of Biological Sciences, University of Hong Kong, Hong Kong, China
| | - Gerard Farré-Armengol
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
| | - Josep Peñuelas
- Global Ecology Unit, CREAF-CSIC-UAB, CSIC, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
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Galal AA, Safhi FA, El-Hity MA, Kamara MM, Gamal El-Din EM, Rehan M, Farid M, Behiry SI, El-Soda M, Mansour E. Molecular Genetic Diversity of Local and Exotic Durum Wheat Genotypes and Their Combining Ability for Agronomic Traits under Water Deficit and Well-Watered Conditions. Life (Basel) 2023; 13:2293. [PMID: 38137895 PMCID: PMC10744700 DOI: 10.3390/life13122293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 11/29/2023] [Accepted: 11/29/2023] [Indexed: 12/24/2023] Open
Abstract
Water deficit poses significant environmental stress that adversely affects the growth and productivity of durum wheat. Moreover, projections of climate change suggest an increase in the frequency and severity of droughts, particularly in arid regions. Consequently, there is an urgent need to develop drought-tolerant and high-yielding genotypes to ensure sustained production and global food security in response to population growth. This study aimed to explore the genetic diversity among local and exotic durum wheat genotypes using simple sequence repeat (SSR) markers and, additionally, to explore the combining ability and agronomic performance of assessed durum wheat genotypes and their 28 F1 crosses under normal and drought stress conditions. The investigated SSRs highlighted and confirmed the high genetic variation among the evaluated parental durum wheat genotypes. These diverse eight parental genotypes were consequently used to develop 28 F1s through a diallel mating design. The parental durum genotypes and their developed 28 F1s were assessed under normal and drought stress conditions. The evaluated genotypes were analyzed for their general and specific combining abilities as well as heterosis for agronomic traits under both conditions. The local cultivar Bani-Suef-7 (P8) is maintained as an effective combiner for developing shortened genotypes and improving earliness. Moreover, the local cultivars Bani-Suef-5 (P7) and Bani-Suef-7 (P8) along with the exotic line W1520 (P6) demonstrated excellent general combining ability for improving grain yield and its components under drought stress conditions. Furthermore, valuable specific hybrid combinations, W988 × W994 (P1 × P2), W996 × W1518 (P3 × P5), W1011 × W1520 (P4 × P6), and Bani-Suef-5 × Bani-Suef-7 (P7 × P8), were identified for grain yield and its components under drought stress conditions. The assessed 36 genotypes were grouped according to tolerance indices into five clusters varying from highly drought-sensitive genotypes (group E) to highly drought-tolerant (group A). The genotypes in cluster A (two crosses) followed by thirteen crosses in cluster B displayed higher drought tolerance compared to the other crosses and their parental genotypes. Subsequently, these hybrids could be considered valuable candidates in future durum wheat breeding programs to develop desired segregants under water-deficit conditions. Strong positive relationships were observed between grain yield and number of grains per spike, plant height, and 1000-grain weight under water-deficit conditions. These results highlight the significance of these traits for indirect selection under drought stress conditions, particularly in the early stages of breeding, owing to their convenient measurability.
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Affiliation(s)
- Ahmed A. Galal
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt; (A.A.G.)
| | - Fatmah A. Safhi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Mahmoud A. El-Hity
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt; (A.A.G.)
| | - Mohamed M. Kamara
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt; (A.A.G.)
| | - Eman M. Gamal El-Din
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt; (A.A.G.)
| | - Medhat Rehan
- Department of Plant Production and Protection, College of Agriculture and Veterinary Medicine, Qassim University, Burydah 51452, Saudi Arabia;
- Department of Genetics, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt;
| | - Mona Farid
- Department of Genetics, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt;
| | - Said I. Behiry
- Agricultural Botany Department, Faculty of Agriculture (Saba Basha), Alexandria University, Alexandria 21531, Egypt
| | - Mohamed El-Soda
- Department of Genetics, Faculty of Agriculture, Cairo University, Giza 12613, Egypt;
| | - Elsayed Mansour
- Department of Crop Science, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt;
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3
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Sarwar M, Saleem MF, Ullah N, Khan MJ, Maqsood H, Ahmad H, Tanveer A, Shahid M. Silver nanoparticles protect tillering in drought-stressed wheat by improving leaf water relations and physiological functioning. FUNCTIONAL PLANT BIOLOGY : FPB 2023; 50:901-914. [PMID: 37489023 DOI: 10.1071/fp23036] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 07/06/2023] [Indexed: 07/26/2023]
Abstract
The tillering phase of wheat (Triticum aestivum ) crops is extremely susceptible to drought. We explored the potential of silver nanoparticles (AgNPs) in protecting wheat genotypes from drought injury during this sensitive stage. After treating with AgNPs (60ppm), the plants were submitted to different water levels; i.e. 100% field capacity (FC), 75% FC (mild drought), 50% FC (moderate drought) and 25% FC (severe drought) from 15 to 41days after sowing (tillering phase). Leaf physiological data were collected at stress termination, while yield attributes were recorded at crop maturity. We found that increasing drought intensity significantly impaired leaf physiology and grain yield of both studied genotypes. Compared with control, moderately and severely drought-stressed plants produced 25% and 45% lesser grain yield per spike, respectively (averaged across genotypes and years of study). Likewise, moderate and severe drought reduced photosynthesis by 49% and 76%, respectively, compared with control. In contrast, AgNPs significantly restored leaf physiological functioning and grain yield formation at maturity. For example, under moderate and severe drought, AgNPs-treated plants produced 22% and 17% more grains per plant, respectively, than their respective water-treated plants. Our study suggests that exogenous AgNPs can protect wheat crops from drought during early development stages.
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Affiliation(s)
- Muhammad Sarwar
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | | | - Najeeb Ullah
- Agricultural Research Station, Office of VP for Research and Graduate Studies, Qatar University, Doha 2713, Qatar
| | | | - Hamza Maqsood
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | - Hassaan Ahmad
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | - Asif Tanveer
- Department of Agronomy, The University of Lahore, Lahore, Pakistan
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Niu Y, Li J, Sun F, Song T, Han B, Liu Z, Su P. Comparative transcriptome analysis reveals the key genes and pathways involved in drought stress response of two wheat (Triticum aestivum L) varieties. Genomics 2023; 115:110688. [PMID: 37474013 DOI: 10.1016/j.ygeno.2023.110688] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 05/30/2023] [Accepted: 07/14/2023] [Indexed: 07/22/2023]
Abstract
Drought stress results in significant yield losses in wheat production. Although studies have reported a number of wheat drought tolerance genes, a deeper understanding of the tolerance mechanisms is required for improving wheat tolerance against drought stress. In this study, we found that "Deguo 2" exhibited higher tolerance to drought than "Truman". Transcriptomics analysis enabled identification of 6084 and 7146 differentially expressed genes (DEGs), mainly mapping flavonoid biosynthesis, plant hormone, phenolamides and antioxidant pathways and revealed altered expression levels of about 700 genes. Exogenous melatonin application enhanced wheat tolerance against drought stress. Co-expression analysis showed that bHLH and bZIP transcription factors may be involved in the regulation of various pathway genes. Take together, these results provide new insights for us on exploring the crosstalk between phytohormones and secondary metabolites, and will deepen the understanding of the complex tolerance mechanisms against drought stress in wheat.
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Affiliation(s)
- Yufei Niu
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Jingyu Li
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Fanting Sun
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Taiyu Song
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Baojia Han
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Zijie Liu
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China
| | - Peisen Su
- College of Agronomy, Liaocheng University, Liaocheng 252059, PR China.
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Del Pozo A, Méndez-Espinoza AM, Garriga M, Estrada F, Castillo D, Matus I, Lobos GA. Phenotypic variation in leaf photosynthetic traits, leaf area index, and carbon discrimination of field-grown wheat genotypes and their relationship with yield performance in Mediterranean environments. PLANTA 2023; 258:22. [PMID: 37329469 DOI: 10.1007/s00425-023-04163-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 05/16/2023] [Indexed: 06/19/2023]
Abstract
MAIN CONCLUSION Leaf water potential, gas exchange, and chlorophyll fluorescence exhibited significant differences among genotypes, high environmental effects, but low heritability. The highest-yielding and drought-tolerant genotypes presented superior harvest index and grain weight, compared to drought-susceptible ones. Physiological phenotyping can help identify useful traits related to crop performance under water-limited conditions. A set of fourteen bread wheat genotypes with contrasting grain yield (GY) was studied in eight Mediterranean environments in Chile, resulting from the combination of two sites (Cauquenes and Santa Rosa), two water conditions (rainfed-WL and irrigated-WW), and four growing seasons (2015-2018). The objectives were to (i) evaluate the phenotypic variation of leaf photosynthetic traits after heading (anthesis and grain filling) in different environments; (ii) analyze the relationship between GY and leaf photosynthetic traits and carbon isotope discrimination (Δ13C); and (iii) identify those traits that could have a greater impact in the determination of tolerant genotypes under field conditions. Agronomic traits exhibited significant genotypic differences and genotype × environment (GxE) interaction. The average GY under the WW condition at Santa Rosa was 9.2 Mg ha-1 (range 8.2-9.9 Mg ha-1) and under the WL condition at Cauquenes was 6.2 Mg ha-1 (range 3.7-8.3 Mg ha-1). The GY was closely related to the harvest index (HI) in 14 out of 16 environments, a trait exhibiting a relatively high heritability. In general terms, the leaf photosynthetic traits presented low GxE interaction, but high environmental effects and low heritability, except for the chlorophyll content. The relationships between GY and leaf photosynthetic traits were weaker when performed across genotypes in each environment, indicating low genotypic effects, and stronger when performed across environments for each genotype. The leaf area index and Δ13C also presented high environmental effects and low heritability, and their correlations with GY were influenced by environmental effects. The highest-yielding and drought-tolerant genotypes presented superior HI and grain weight, but no clear differences in leaf photosynthetic traits or Δ13C, compared to drought-susceptible ones. It seems that the phenotypic plasticity of agronomic and leaf photosynthetic traits is very important for crop adaptation to Mediterranean environments.
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Affiliation(s)
- Alejandro Del Pozo
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Av. Lircay s/n, Talca, Chile.
| | - Ana María Méndez-Espinoza
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Av. Lircay s/n, Talca, Chile
- CRI-Remehue, Instituto de Investigaciones Agropecuarias, Km 8 Norte, Osorno, Chile
| | - Miguel Garriga
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Av. Lircay s/n, Talca, Chile
- Facultad de Agronomía, Universidad de Concepción, Av. Vicente Méndez 595, Chillán, Chile
| | - Félix Estrada
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Av. Lircay s/n, Talca, Chile
- CRI-Remehue, Instituto de Investigaciones Agropecuarias, Km 8 Norte, Osorno, Chile
| | - Dalma Castillo
- CRI-Quilamapu, Instituto de Investigaciones Agropecuarias, Av. Vicente Méndez 515, Chillán, Chile
| | - Iván Matus
- CRI-Quilamapu, Instituto de Investigaciones Agropecuarias, Av. Vicente Méndez 515, Chillán, Chile
| | - Gustavo A Lobos
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Av. Lircay s/n, Talca, Chile
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Bao X, Hou X, Duan W, Yin B, Ren J, Wang Y, Liu X, Gu L, Zhen W. Screening and evaluation of drought resistance traits of winter wheat in the North China Plain. FRONTIERS IN PLANT SCIENCE 2023; 14:1194759. [PMID: 37396647 PMCID: PMC10313073 DOI: 10.3389/fpls.2023.1194759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 05/02/2023] [Indexed: 07/04/2023]
Abstract
Background Drought-resistant varieties are an important way to address the conflict between wheat's high water demand and the scarcity of water resources in the North China Plain (NCP). Drought stress impacts many morphological and physiological indicators in winter wheat. To increase the effectiveness of breeding drought-tolerant varieties, choosing indices that can accurately indicate a variety's drought resistance is advantageous. Results From 2019 to 2021, 16 representative winter wheat cultivars were cultivated in the field, and 24 traits, including morphological, photosynthetic, physiological, canopy, and yield component traits, were measured to evaluate the drought tolerance of the cultivars. Principal component analysis (PCA) was used to transform 24 conventional traits into 7 independent, comprehensive indices, and 10 drought tolerance indicators were screened out by regression analysis. The 10 drought tolerance indicators were plant height (PH), spike number (SN), spikelet per spike(SP), canopy temperature (CT), leaf water content (LWC), photosynthetic rate (A), intercellular CO2 concentration (Ci), peroxidase activity (POD), malondialdehyde content (MDA), and abscisic acid (ABA). In addition, through membership function and cluster analysis, 16 wheat varieties were divided into 3 categories: drought-resistant, drought weak sensitive, and drought-sensitive. Conclusion JM418, HM19,SM22, H4399, HG35, and GY2018 exhibited excellent drought tolerance and,therefore, can be used as ideal references to study the drought tolerance mechanism in wheat and breeding drought-tolerant wheat cultivars.
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Affiliation(s)
- Xiaoyuan Bao
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Xiaoyang Hou
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Weiwei Duan
- College of Agronomy, Hebei Agricultural University, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Baozhong Yin
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
| | - Jianhong Ren
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Yandong Wang
- College of Agronomy, Hebei Agricultural University, Baoding, China
| | - Xuejing Liu
- College of Agronomy, Hebei Agricultural University, Baoding, China
- College of Clinical Medicine, North China University of Science and Technology, Tangshan, China
| | - Limin Gu
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
| | - Wenchao Zhen
- College of Agronomy, Hebei Agricultural University, Baoding, China
- Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs, Baoding, China
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
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Mohammadi Alagoz S, Hadi H, Toorchi M, Pawłowski TA, Asgari Lajayer B, Price GW, Farooq M, Astatkie T. Morpho-physiological responses and growth indices of triticale to drought and salt stresses. Sci Rep 2023; 13:8896. [PMID: 37264097 DOI: 10.1038/s41598-023-36119-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 05/30/2023] [Indexed: 06/03/2023] Open
Abstract
Salinity and drought are two major abiotic stresses challenging global crop production and food security. In this study, the effects of individual and combined effects of drought (at different phenological stages) and salt stresses on growth, morphology, and physiology of triticale were evaluated. For this purpose, a 3 x 4 factorial design in three blocks experiment was conducted. The stress treatments included three levels of salinity (0, 50, and 100 mM NaCl) and four levels of drought (regular irrigation as well as irrigation disruption at heading, flowering, and kernel extension stages). The stresses, individual as well as combined, caused a significant decrease in chlorophyll contents, total dry matter, leaf area index, relative water content, and grain yield of triticale. In this regard, the highest reduction was recorded under combined stresses of 100 mM NaCl and drought stress at flowering. However, an increase in soluble sugars, leaf free proline, carotenoid contents, and electrolyte leakage was noted under stress conditions compared to the control. In this regard, the highest increase in leaf free proline, soluble sugars, and carotenoid contents were noted under the combination of severe salinity and drought stress imposed at the flowering stage. Investigating the growth indices in severe salinity and water deficit stress in different phenological stages shows the predominance of ionic stress over osmotic stress under severe salinity. The highest grain yield was observed under non-saline well-watered conditions whereas the lowest grain yield was recorded under severe salinity and drought stress imposed at the flowering stage. In conclusion, the flowering stage was more sensitive than the heading and kernel extension stages in terms of water deficit. The impact of salinity and water deficit was more pronounced on soluble sugars and leaf free proline; so, these criteria can be used as physiological indicators for drought and salinity tolerance in triticale.
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Affiliation(s)
- Soheyla Mohammadi Alagoz
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran.
| | - Hashem Hadi
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Mahmoud Toorchi
- Department of Plant Breeding and Biotechnology, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | | | | | - G W Price
- Faculty of Agriculture, Dalhousie University, Truro, NS, B2N 5E3, Canada
| | - Muhammad Farooq
- Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al-Khoud 123, Muscat, Oman
| | - Tess Astatkie
- Faculty of Agriculture, Dalhousie University, Truro, NS, B2N 5E3, Canada
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Reddy SS, Saini DK, Singh GM, Sharma S, Mishra VK, Joshi AK. Genome-wide association mapping of genomic regions associated with drought stress tolerance at seedling and reproductive stages in bread wheat. FRONTIERS IN PLANT SCIENCE 2023; 14:1166439. [PMID: 37251775 PMCID: PMC10213333 DOI: 10.3389/fpls.2023.1166439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/14/2023] [Indexed: 05/31/2023]
Abstract
Understanding the genetic architecture of drought stress tolerance in bread wheat at seedling and reproductive stages is crucial for developing drought-tolerant varieties. In the present study, 192 diverse wheat genotypes, a subset from the Wheat Associated Mapping Initiative (WAMI) panel, were evaluated at the seedling stage in a hydroponics system for chlorophyll content (CL), shoot length (SLT), shoot weight (SWT), root length (RLT), and root weight (RWT) under both drought and optimum conditions. Following that, a genome-wide association study (GWAS) was carried out using the phenotypic data recorded during the hydroponics experiment as well as data available from previously conducted multi-location field trials under optimal and drought stress conditions. The panel had previously been genotyped using the Infinium iSelect 90K SNP array with 26,814 polymorphic markers. Using single as well as multi-locus models, GWAS identified 94 significant marker-trait associations (MTAs) or SNPs associated with traits recorded at the seedling stage and 451 for traits recorded at the reproductive stage. The significant SNPs included several novel, significant, and promising MTAs for different traits. The average LD decay distance for the whole genome was approximately 0.48 Mbp, ranging from 0.07 Mbp (chromosome 6D) to 4.14 Mbp (chromosome 2A). Furthermore, several promising SNPs revealed significant differences among haplotypes for traits such as RLT, RWT, SLT, SWT, and GY under drought stress. Functional annotation and in silico expression analysis revealed important putative candidate genes underlying the identified stable genomic regions such as protein kinases, O-methyltransferases, GroES-like superfamily proteins, NAD-dependent dehydratases, etc. The findings of the present study may be useful for improving yield potential, and stability under drought stress conditions.
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Affiliation(s)
- S Srinatha Reddy
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Dinesh Kumar Saini
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - G Mahendra Singh
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Sandeep Sharma
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Vinod Kumar Mishra
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Arun Kumar Joshi
- Borlaug Institute of South Asia (BISA), NASC Complex, DPS Marg, New Delhi, India
- CIMMYT, NASC Complex, DPS Marg, New Delhi, India
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9
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Omar AA, Heikal YM, Zayed EM, Shamseldin SAM, Salama YE, Amer KE, Basuoni MM, Abd Ellatif S, Mohamed AH. Conferring of Drought and Heat Stress Tolerance in Wheat ( Triticum aestivum L.) Genotypes and Their Response to Selenium Nanoparticles Application. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:998. [PMID: 36985894 PMCID: PMC10051906 DOI: 10.3390/nano13060998] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/23/2023] [Accepted: 03/07/2023] [Indexed: 06/18/2023]
Abstract
In this study, the role of selenium nanoparticles (SeNPs, 10 mg·L-1) has been investigated in modulating the negative effects of drought and heat stresses on eight bread wheat (Triticum aestivum L.) genotype seedlings. Those genotypes included Giza-168, Giza-171, Misr-1, Misr-3, Shandweel-1, Sids-1, Sids-12, and Sids-14. The study included six treatments as follows: regular irrigation with 100% Field Capacity (FC) at a temperature of 23 ± 3 °C (T1), drought stress with 60% FC (T2), heat stress of 38 °C for 5 h·day-1 (T3), foliar spray of 10 mg·L-1 of SeNPs only (T4), a combination of drought stress with foliar spray of 10 mg·L-1 of SeNPs (T5), and heat stress with foliar spray of 10 mg·L-1 of SeNPs (T6). The experiment continued for 31 days. Foliar application of SeNPs improved the plant growth, morpho-physiological and biochemical responses, and expression of stress-responsive genes in wheat (T. aestivum L.) seedlings. Overall, morpho-physiological traits such as plant height (PH), shoot fresh weight (SFW), shoot dry weight (SDW), root fresh weight (RFW), and root dry weight (RDW) of wheat genotypes grown under different conditions ranged from 25.37-51.51 cm, 3.29-5.15 g, 0.50-1.97 g, 0.72-4.21 g, and 0.11-1.23 g, respectively. From the morpho-physiological perspective, drought stress had a greater detrimental impact on wheat plants than heat stress, whereas heat stress significantly impacted the expression of stress-responsive genes. Stress responses to drought and heat varied between wheat genotypes, suggesting that different genotypes are more resilient to stress. Exogenous spraying of 10 mg·L-1 of SeNPs improved the photosynthetic pigments, photosynthetic rate, gas exchange, and transpiration rate of wheat plants and enhanced drought and heat tolerance by increasing the activity of antioxidant enzymes including catalase (CAT), ascorbate peroxidase (APX), and superoxide dismutase (SOD) and the expression level of stress-responsive genes. Our results showed that spraying wheat seedlings with 10 mg·L-1 of SeNPs enhanced SOD activity for all genotypes as compared to the control, with the Sids-12 genotype having the highest value (196.43 U·mg-1 FW·min-1) and the Giza-168 genotype having the lowest (152.30 U·mg-1 FW·min-1). The expression of PIP1, LEA-1, HSP70, and HSP90 stress-responsive genes was more significant in tolerant genotypes (Giza-171 and Giza-168) than in sensitive ones (Misr-1 and Misr-3) in response to drought and heat stresses. Under stress conditions, the shoot and root fresh weights, photosynthetic pigment content, stomatal conductance (SC), and transpiration rate (TR) were positively correlated with plant height (PH), while root and shoot dry weights, malondialdehyde (MDA), proline, hydrogen peroxide (H2O2), and APX were negatively correlated. Multivariate analysis and biplot results revealed that genotypes Giza-168, Giza-171, Sids-12, and Sids-14 performed well in both stress situations and were classified as stress-tolerant genotypes. These best genotypes may be employed in future breeding projects as tools to face climate change. This study concluded that various physio-biochemicals and gene expression attributes under drought and heat stress could be modulated by foliar application of SeNPs in wheat genotypes, potentially alleviating the adverse effects of drought and heat stress.
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Affiliation(s)
- Ahmad A. Omar
- Biochemistry Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt
- Citrus Research and Education Center, University of Florida, IFAS, Lake Alfred, FL 33850, USA
| | - Yasmin M. Heikal
- Botany Department, Faculty of Science, Mansoura University, Mansoura 35516, Egypt
| | - Ehab M. Zayed
- Cell Study Research Department, Field Crops Research Institute, Agricultural Research Center, Giza 12619, Egypt
| | - Sahar A. M. Shamseldin
- Botany Department, Women’s College for Arts, Science and Education, Ain Shams University, Cairo 11566, Egypt
| | - Yossry E. Salama
- Crop Science Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
| | - Khaled E. Amer
- Crop Science Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
| | - Mostafa M. Basuoni
- Botany and Microbiology Department, Faculty of Science (Boys), Al-Azhar University, Cairo 11884, Egypt
| | - Sawsan Abd Ellatif
- Bioprocess Development Department, Genetic Engineering and Biotechnology Research Institute (GEBRI), City for Scientific Research and Technology Applications, New Borg El-Arab 21934, Egypt
| | - Azza H. Mohamed
- Citrus Research and Education Center, University of Florida, IFAS, Lake Alfred, FL 33850, USA
- Agricultural Chemistry Department, Faculty of Agriculture, Mansoura University, Mansoura 33516, Egypt
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10
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Raza A, Mubarik MS, Sharif R, Habib M, Jabeen W, Zhang C, Chen H, Chen ZH, Siddique KHM, Zhuang W, Varshney RK. Developing drought-smart, ready-to-grow future crops. THE PLANT GENOME 2023; 16:e20279. [PMID: 36366733 DOI: 10.1002/tpg2.20279] [Citation(s) in RCA: 36] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 08/02/2022] [Indexed: 05/10/2023]
Abstract
Breeding crop plants with increased yield potential and improved tolerance to stressful environments is critical for global food security. Drought stress (DS) adversely affects agricultural productivity worldwide and is expected to rise in the coming years. Therefore, it is vital to understand the physiological, biochemical, molecular, and ecological mechanisms associated with DS. This review examines recent advances in plant responses to DS to expand our understanding of DS-associated mechanisms. Suboptimal water sources adversely affect crop growth and yields through physical impairments, physiological disturbances, biochemical modifications, and molecular adjustments. To control the devastating effect of DS in crop plants, it is important to understand its consequences, mechanisms, and the agronomic and genetic basis of DS for sustainable production. In addition to plant responses, we highlight several mitigation options such as omics approaches, transgenics breeding, genome editing, and biochemical to mechanical methods (foliar treatments, seed priming, and conventional agronomic practices). Further, we have also presented the scope of conventional and speed breeding platforms in helping to develop the drought-smart future crops. In short, we recommend incorporating several approaches, such as multi-omics, genome editing, speed breeding, and traditional mechanical strategies, to develop drought-smart cultivars to achieve the 'zero hunger' goal.
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Affiliation(s)
- Ali Raza
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry Univ., Fuzhou, 350002, China
| | | | - Rahat Sharif
- Dep. of Horticulture, College of Horticulture and Plant Protection, Yangzhou Univ., Yangzhou, Jiangsu, 225009, China
| | - Madiha Habib
- National Institute for Genomics and Advanced Biotechnology, National Agricultural Research Centre, Park Rd., Islamabad, 45500, Pakistan
| | - Warda Jabeen
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National Univ. of Sciences and Technology, Islamabad, 44000, Pakistan
| | - Chong Zhang
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry Univ., Fuzhou, 350002, China
| | - Hua Chen
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry Univ., Fuzhou, 350002, China
| | - Zhong-Hua Chen
- School of Science, Hawkesbury Institute for the Environment, Western Sydney Univ., Penrith, NSW, 2751, Australia
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The Univ. of Western Australia, Crawley, Perth, 6009, Australia
| | - Weijian Zhuang
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry Univ., Fuzhou, 350002, China
| | - Rajeev K Varshney
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry Univ., Fuzhou, 350002, China
- State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch Univ., Murdoch, WA, 6150, Australia
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11
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Poggi GM, Corneti S, Aloisi I, Ventura F. Environment-oriented selection criteria to overcome controversies in breeding for drought resistance in wheat. JOURNAL OF PLANT PHYSIOLOGY 2023; 280:153895. [PMID: 36529076 DOI: 10.1016/j.jplph.2022.153895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 11/17/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Wheat is one of the most important cereal crops, representing a fundamental source of calories and protein for the global human population. Drought stress (DS) is a widespread phenomenon, already affecting large wheat-growing areas worldwide, and a major threat for cereal productivity, resulting in consistent losses in average grain yield (GY). Climate change is projected to exacerbate DS incidence and severity by increasing temperatures and changing rainfall patterns. Estimating that wheat production has to substantially increase to guarantee food security to a demographically expanding human population, the need for breeding programs focused on improving wheat drought resistance is manifest. Drought occurrence, in terms of time of appearance, duration, frequency, and severity, along the plant's life cycle varies significantly among different environments and different agricultural years, making it difficult to identify reliable phenological, morphological, and functional traits to be used as effective breeding tools. The situation is further complicated by the presence of confounding factors, e.g., other concomitant abiotic stresses, in an open-field context. Consequently, the relationship between morpho-functional traits and GY under water deficit is often contradictory; moreover, controversies have emerged not only on which traits are to be preferred, but also on how one specific trait should be desired. In this review, we attempt to identify the possible causes of these disputes and propose the most suitable selection criteria in different target environments and, thus, the best trait combinations for breeders in different drought contexts. In fact, an environment-oriented approach could be a valuable solution to overcome controversies in identifying the proper selection criteria for improving wheat drought resistance.
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Affiliation(s)
- Giovanni Maria Poggi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy; Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Simona Corneti
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences (BiGeA), Alma Mater Studiorum, University of Bologna, Bologna, Italy.
| | - Francesca Ventura
- Department of Agricultural and Food Sciences (DISTAL), Alma Mater Studiorum, University of Bologna, Bologna, Italy
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12
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Elbasyoni IS, Eltaher S, Morsy S, Mashaheet AM, Abdallah AM, Ali HG, Mariey SA, Baenziger PS, Frels K. Novel Single-Nucleotide Variants for Morpho-Physiological Traits Involved in Enhancing Drought Stress Tolerance in Barley. PLANTS (BASEL, SWITZERLAND) 2022; 11:3072. [PMID: 36432800 PMCID: PMC9696095 DOI: 10.3390/plants11223072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/14/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Barley (Hordeum vulgare L.) thrives in the arid and semi-arid regions of the world; nevertheless, it suffers large grain yield losses due to drought stress. A panel of 426 lines of barley was evaluated in Egypt under deficit (DI) and full irrigation (FI) during the 2019 and 2020 growing seasons. Observations were recorded on the number of days to flowering (NDF), total chlorophyll content (CH), canopy temperature (CAN), grain filling duration (GFD), plant height (PH), and grain yield (Yield) under DI and FI. The lines were genotyped using the 9K Infinium iSelect single nucleotide polymorphisms (SNP) genotyping platform, which resulted in 6913 high-quality SNPs. In conjunction with the SNP markers, the phenotypic data were subjected to a genome-wide association scan (GWAS) using Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway (BLINK). The GWAS results indicated that 36 SNPs were significantly associated with the studied traits under DI and FI. Furthermore, eight markers were significant and common across DI and FI water regimes, while 14 markers were uniquely associated with the studied traits under DI. Under DI and FI, three (11_10326, 11_20042, and 11_20170) and five (11_20099, 11_10326, 11_20840, 12_30298, and 11_20605) markers, respectively, had pleiotropic effect on at least two traits. Among the significant markers, 24 were annotated to known barley genes. Most of these genes were involved in plant responses to environmental stimuli such as drought. Overall, nine of the significant markers were previously reported, and 27 markers might be considered novel. Several markers identified in this study could enable the prediction of barley accessions with optimal agronomic performance under DI and FI.
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Affiliation(s)
- Ibrahim S. Elbasyoni
- Crop Science Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Shamseldeen Eltaher
- Department of Plant Biotechnology, Genetic Engineering and Biotechnology Research Institute (GEBRI), University of Sadat City (USC), Sadat City 32897, Egypt
| | - Sabah Morsy
- Crop Science Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
| | - Alsayed M. Mashaheet
- Plant Pathology Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
| | - Ahmed M. Abdallah
- Natural Resources and Agricultural Engineering Department, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt
| | - Heba G. Ali
- Barley Research Department, Field Crops Research Institute, Agricultural Research Center, 9 Gamma Street-Giza, Cairo 12619, Egypt
| | - Samah A. Mariey
- Barley Research Department, Field Crops Research Institute, Agricultural Research Center, 9 Gamma Street-Giza, Cairo 12619, Egypt
| | - P. Stephen Baenziger
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Katherine Frels
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
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13
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Lauterberg M, Saranga Y, Deblieck M, Klukas C, Krugman T, Perovic D, Ordon F, Graner A, Neumann K. Precision phenotyping across the life cycle to validate and decipher drought-adaptive QTLs of wild emmer wheat ( Triticum turgidum ssp. dicoccoides) introduced into elite wheat varieties. FRONTIERS IN PLANT SCIENCE 2022; 13:965287. [PMID: 36311121 PMCID: PMC9598872 DOI: 10.3389/fpls.2022.965287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
Drought events or the combination of drought and heat conditions are expected to become more frequent due to global warming, and wheat yields may fall below their long-term average. One way to increase climate-resilience of modern high-yielding varieties is by their genetic improvement with beneficial alleles from crop wild relatives. In the present study, the effect of two beneficial QTLs introgressed from wild emmer wheat and incorporated in the three wheat varieties BarNir, Zahir and Uzan was studied under well-watered conditions and under drought stress using non-destructive High-throughput Phenotyping (HTP) throughout the life cycle in a single pot-experiment. Plants were daily imaged with RGB top and side view cameras and watered automatically. Further, at two time points, the quantum yield of photosystem II was measured with a top view FluorCam. The QTL carrying near isogenic lines (NILs) were compared with their corresponding parents by t-test for all non-invasively obtained traits and for the manually determined agronomic and yield parameters. Data quality of phenotypic traits (repeatability) in the controlled HTP experiment was above 85% throughout the life cycle and at maturity. Drought stress had a strong effect on growth in all wheat genotypes causing biomass reduction from 2% up to 70% at early and late points in the drought period, respectively. At maturity, the drought caused 47-55% decreases in yield-related traits grain weight, straw weight and total biomass and reduced TKW by 10%, while water use efficiency (WUE) increased under drought by 29%. The yield-enhancing effect of the introgressed QTLs under drought conditions that were previously demonstrated under field/screenhouse conditions in Israel, could be mostly confirmed in a greenhouse pot experiment using HTP. Daily precision phenotyping enabled to decipher the mode of action of the QTLs in the different genetic backgrounds throughout the entire wheat life cycle. Daily phenotyping allowed a precise determination of the timing and size of the QTLs effect (s) and further yielded information about which image-derived traits are informative at which developmental stage of wheat during the entire life cycle. Maximum height and estimated biovolume were reached about a week after heading, so experiments that only aim at exploring these traits would not need a longer observation period. To obtain information on different onset and progress of senescence, the CVa curves represented best the ongoing senescence of plants. The QTL on 7A in the BarNir background was found to improve yield under drought by increased biomass growth, a higher photosynthetic performance, a higher WUE and a "stay green effect."
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Affiliation(s)
- Madita Lauterberg
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Yehoshua Saranga
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Mathieu Deblieck
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Christian Klukas
- Digitalization in Research and Development (ROM), BASF SE, Ludwigshafen am Rhein, Germany
| | - Tamar Krugman
- Institute of Evolution, University of Haifa, Haifa, Israel
| | - Dragan Perovic
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Frank Ordon
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Andreas Graner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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14
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Večeřová K, Oravec M, Puranik S, Findurová H, Veselá B, Opoku E, Ofori-Amanfo KK, Klem K, Urban O, Sahu PP. Single and interactive effects of variables associated with climate change on wheat metabolome. FRONTIERS IN PLANT SCIENCE 2022; 13:1002561. [PMID: 36299781 PMCID: PMC9589161 DOI: 10.3389/fpls.2022.1002561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 09/08/2022] [Indexed: 05/27/2023]
Abstract
One of the key challenges linked with future food and nutritional security is to evaluate the interactive effect of climate variables on plants' growth, fitness, and yield parameters. These interactions may lead to unique shifts in the morphological, physiological, gene expression, or metabolite accumulation patterns, leading to an adaptation response that is specific to future climate scenarios. To understand such changes, we exposed spring wheat to 7 regimes (3 single and 4 combined climate treatments) composed of elevated temperature, the enhanced concentration of CO2, and progressive drought stress corresponding to the predicted climate of the year 2100. The physiological and metabolic responses were then compared with the current climate represented by the year 2020. We found that the elevated CO2 (eC) mitigated some of the effects of elevated temperature (eT) on physiological performance and metabolism. The metabolite profiling of leaves revealed 44 key metabolites, including saccharides, amino acids, and phenolics, accumulating contrastingly under individual regimes. These metabolites belong to the central metabolic pathways that are essential for cellular energy, production of biosynthetic pathways precursors, and oxidative balance. The interaction of eC alleviated the negative effect of eT possibly by maintaining the rate of carbon fixation and accumulation of key metabolites and intermediates linked with the Krebs cycle and synthesis of phenolics. Our study for the first time revealed the influence of a specific climate factor on the accumulation of metabolic compounds in wheat. The current work could assist in the understanding and development of climate resilient wheat by utilizing the identified metabolites as breeding targets for food and nutritional security.
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Affiliation(s)
- Kristýna Večeřová
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Michal Oravec
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Swati Puranik
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Hana Findurová
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Barbora Veselá
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Emmanuel Opoku
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Kojo Kwakye Ofori-Amanfo
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czechia
| | - Karel Klem
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Otmar Urban
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Pranav Pankaj Sahu
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
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15
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A Spatial AI-Based Agricultural Robotic Platform for Wheat Detection and Collision Avoidance. AI 2022. [DOI: 10.3390/ai3030042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
To obtain more consistent measurements through the course of a wheat growing season, we conceived and designed an autonomous robotic platform that performs collision avoidance while navigating in crop rows using spatial artificial intelligence (AI). The main constraint the agronomists have is to not run over the wheat while driving. Accordingly, we have trained a spatial deep learning model that helps navigate the robot autonomously in the field while avoiding collisions with the wheat. To train this model, we used publicly available databases of prelabeled images of wheat, along with the images of wheat that we have collected in the field. We used the MobileNet single shot detector (SSD) as our deep learning model to detect wheat in the field. To increase the frame rate for real-time robot response to field environments, we trained MobileNet SSD on the wheat images and used a new stereo camera, the Luxonis Depth AI Camera. Together, the newly trained model and camera could achieve a frame rate of 18–23 frames per second (fps)—fast enough for the robot to process its surroundings once every 2–3 inches of driving. Once we knew the robot accurately detects its surroundings, we addressed the autonomous navigation of the robot. The new stereo camera allows the robot to determine its distance from the trained objects. In this work, we also developed a navigation and collision avoidance algorithm that utilizes this distance information to help the robot see its surroundings and maneuver in the field, thereby precisely avoiding collisions with the wheat crop. Extensive experiments were conducted to evaluate the performance of our proposed method. We also compared the quantitative results obtained by our proposed MobileNet SSD model with those of other state-of-the-art object detection models, such as the YOLO V5 and Faster region-based convolutional neural network (R-CNN) models. The detailed comparative analysis reveals the effectiveness of our method in terms of both model precision and inference speed.
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16
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Azmat A, Tanveer Y, Yasmin H, Hassan MN, Shahzad A, Reddy M, Ahmad A. Coactive role of zinc oxide nanoparticles and plant growth promoting rhizobacteria for mitigation of synchronized effects of heat and drought stress in wheat plants. CHEMOSPHERE 2022; 297:133982. [PMID: 35181419 DOI: 10.1016/j.chemosphere.2022.133982] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 01/17/2022] [Accepted: 02/11/2022] [Indexed: 05/25/2023]
Abstract
This study intended to investigate the potential of the plant growth-promoting rhizobacteria (PGPR) and green synthesized zinc oxide nanoparticles (ZnO-NPs) (fruit extract of Papaya) against heat and drought stress in wheat. The characterization of green-synthesized ZnO-NPs was done through UV-vis spectrophotometry, Fourier-transform infrared spectrometry, X-ray diffraction and scanning electron microscopy. Individual and combination of PGPR (Pseudomonas sp.) and ZnO-NPs (10 ppm) amendments were tested in a pot experiment to upregulate wheat defence system under three stress groups (drought, heat and combined heat and drought stress). Drought and heat stress synergistically caused higher damage to wheat plants than individual heat and drought stress. This observation was confirmed with remarkable higher MDA and hydrogen peroxide (H2O2) content. Treated plants exposed to all stress groups showed an improved wheat growth and stress resistance through better biomass, photosynthetic pigments, nutrients, soluble sugars, protein and indole acetic acid content. Combination of ZnO-NPs and Pseudomonas sp. Protects the plants from all stress groups by producing higher proline, antioxidant enzymes i. e superoxide dismutase, peroxidase, catalase, ascorbate peroxidase, glutathione reductase and dehydroascorbate reductase, and abscisic acid. Moreover, higher stress alleviation by this treatment was manifested by marked reduced electrolyte leakage, MDA and H2O2. The findings of current study confirmed that the synergistic actions of PGPR and ZnO-NPs can rescue plants from both single and combined heat and drought stress.
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Affiliation(s)
- Ammar Azmat
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
| | - Yashfa Tanveer
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
| | - Humaira Yasmin
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan.
| | | | - Asim Shahzad
- Department of Botany, Mohi- Ud-Din Islamic University, Nerian Sharif, 12080, AJ&K, Pakistan
| | | | - Ajaz Ahmad
- Department of Clinical Pharmacy, College of Pharmacy, King Saud University, Riyadh, 11451, Saudi Arabia
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17
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Bapela T, Shimelis H, Tsilo TJ, Mathew I. Genetic Improvement of Wheat for Drought Tolerance: Progress, Challenges and Opportunities. PLANTS (BASEL, SWITZERLAND) 2022; 11:1331. [PMID: 35631756 PMCID: PMC9144332 DOI: 10.3390/plants11101331] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 04/27/2022] [Accepted: 05/04/2022] [Indexed: 06/01/2023]
Abstract
Wheat production and productivity are challenged by recurrent droughts associated with climate change globally. Drought and heat stress resilient cultivars can alleviate yield loss in marginal production agro-ecologies. The ability of some crop genotypes to thrive and yield in drought conditions is attributable to the inherent genetic variation and environmental adaptation, presenting opportunities to develop drought-tolerant varieties. Understanding the underlying genetic, physiological, biochemical, and environmental mechanisms and their interactions is key critical opportunity for drought tolerance improvement. Therefore, the objective of this review is to document the progress, challenges, and opportunities in breeding for drought tolerance in wheat. The paper outlines the following key aspects: (1) challenges associated with breeding for adaptation to drought-prone environments, (2) opportunities such as genetic variation in wheat for drought tolerance, selection methods, the interplay between above-ground phenotypic traits and root attributes in drought adaptation and drought-responsive attributes and (3) approaches, technologies and innovations in drought tolerance breeding. In the end, the paper summarises genetic gains and perspectives in drought tolerance breeding in wheat. The review will serve as baseline information for wheat breeders and agronomists to guide the development and deployment of drought-adapted and high-performing new-generation wheat varieties.
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Affiliation(s)
- Theresa Bapela
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
- Agricultural Research Council—Small Grain, Bethlehem 9700, South Africa;
| | - Hussein Shimelis
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
| | - Toi John Tsilo
- Agricultural Research Council—Small Grain, Bethlehem 9700, South Africa;
| | - Isack Mathew
- African Centre for Crop Improvement, University of Kwa-Zulu Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa; (H.S.); (I.M.)
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18
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Bacher H, Sharaby Y, Walia H, Peleg Z. Modifying root-to-shoot ratio improves root water influxes in wheat under drought stress. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1643-1654. [PMID: 34791149 DOI: 10.1093/jxb/erab500] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
Drought intensity as experienced by plants depends upon soil moisture status and atmospheric variables such as temperature, radiation, and air vapour pressure deficit. Although the role of shoot architecture with these edaphic and atmospheric factors is well characterized, the extent to which shoot and root dynamic interactions as a continuum are controlled by genotypic variation is less well known. Here, we targeted these interactions using a wild emmer wheat introgression line (IL20) with a distinct drought-induced shift in the shoot-to-root ratio and its drought-sensitive recurrent parent Svevo. Using a gravimetric platform, we show that IL20 maintained higher root water influx and gas exchange under drought stress, which supported a greater growth. Interestingly, the advantage of IL20 in root water influx and transpiration was expressed earlier during the daily diurnal cycle under lower vapour pressure deficit and therefore supported higher transpiration efficiency. Application of a structural equation model indicates that under drought, vapour pressure deficit and radiation are antagonistic to transpiration rate, whereas the root water influx operates as a feedback for the higher atmospheric responsiveness of leaves. Collectively, our results suggest that a drought-induced shift in root-to-shoot ratio can improve plant water uptake potential in a short preferable time window during early morning when vapour pressure deficit is low and the light intensity is not a limiting factor for assimilation.
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Affiliation(s)
- Harel Bacher
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Yoav Sharaby
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Harkamal Walia
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Zvi Peleg
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
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19
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Uzma M, Iqbal A, Hasnain S. Drought tolerance induction and growth promotion by indole acetic acid producing Pseudomonas aeruginosa in Vigna radiata. PLoS One 2022; 17:e0262932. [PMID: 35120147 PMCID: PMC8815908 DOI: 10.1371/journal.pone.0262932] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 01/07/2022] [Indexed: 11/18/2022] Open
Abstract
Drought accompanied with reduced precipitation is one of the key manacles to global agricultural throughput and is expected to escalate further hence posing major challenges to future food safety. For a sustainable agricultural environment, drought resistant plant growth promoting rhizobacteria (PGPR) are new encouraging prospect, which are inexpensive and have no side effects, as those of synthetic fertilizers. In the present study, five strains of Pseudomonas aeruginosa, the strain MK513745, strain MK513746, strain MK513747, strain MK513748, and strain MK513749 were used as drought tolerant PGPR with multiple traits of IAA production, N fixation, P solubilization, siderophore producing capabilities. The strain MK513745 and strain MK513749 produced higher quantities of indole acetic acid (116±0.13 and 108±0.26 μg ml-1). MK513749 yielded 12 different indole compounds in GCMS analysis. The strain MK513748 yielded maximum S.I. (3.33mm) for phosphate solubilizing test. Maximum nitrogen concentration was produced (0.18 μg ml-1) by strain MK513746. Percent siderophore units ranged from 2.65% to 2.83% as all five pseudomonas strains were siderophore positive. In all growth experiments of plant microbe interaction two varieties of Vigna radiata (AZRI-06, NM-11) plants inoculated with P. aeruginosa strains under drought stress responded significantly (P<0.05) better than control stressed plants. Maximum shoot length was enhanced up-to 125%, pod/plant 172%, number of grains 65%, 100 seed weight 95%, 100 seed straw weight 124% and total yield 293% were recorded in plants inoculated with drought stress tolerant PGPR in both varieties as compared to respective stressed control plants. Photosynthetic activity, membrane stability (45%), water content (68%) and antioxidant efficacy (19%) were improved with PGPR inoculations. The variety NM-11 (V2) was more tolerant to drought stress with inoculations of Pseudomonas strains than AZRI-06 (V1). Inoculations with these indole acetic acid producing strains would be suitable for plant growth promotion in areas facing water deficiency.
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Affiliation(s)
- Malika Uzma
- Department of Microbiology and Molecular Genetics, The Women University, Multan, Pakistan
- * E-mail:
| | - Atia Iqbal
- Department of Microbiology and Molecular Genetics, The Women University, Multan, Pakistan
| | - Shahida Hasnain
- Department of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan
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20
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Assessment of different genotypes of wheat under late sowing condition. Heliyon 2022; 8:e08726. [PMID: 35059520 PMCID: PMC8760405 DOI: 10.1016/j.heliyon.2022.e08726] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 10/16/2021] [Accepted: 01/04/2022] [Indexed: 11/22/2022] Open
Abstract
The research was conducted by sowing seven genotypes of wheat which were allotted in the Farmers Field Trial kit of National Wheat Research Program, Bhairahawa, Rupandehi. This study responds to the urgency to assess wheat (Triticum aestivum L.) performance in late sowing conditions. Sowing was done on the 17th of December and heat stress was induced due to the delay in sowing. For each genotype, yield attributing characters and physiological growth stages showed up differently, and the yield obtained was not similar. Among the parameters measured, genotypes with shorter vegetative periods and longer reproductive periods thrived well in existing environmental conditions. Days to anthesis and days to maturity were major parameters for selection criterion of yield effective genotype i.e., faster the anthesis, higher the yield; slower the maturity, higher the yield. Growth stages and quantitative yield attributing parameters justified the majority of variation in yield (80.2%) whereas the remaining is expected to be environmental and nutritional factors. Vijay variety (4.06 ton/ha) out-yielded the other six genotypes while NL1193 produced the least (1.97 tons/ha). Considering Vijay best, Vijay (4.06 ton/ha) and Gautam (3.52 ton/ha) are major genotypes recommended for the cultivation in a farmer's field with the least effect of heat stress in the Terai region of Nepal.
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21
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Nergui K, Jin S, Zhao L, Liu X, Xu T, Wei J, Chen X, Yang Y, Li H, Liu Y, Wang Y, Liu J, Zhao T, Li Y, Tang L, Sun R, Wang X, Liu Y, Deng X. Comparative analysis of physiological, agronomic and transcriptional responses to drought stress in wheat local varieties from Mongolia and Northern China. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 170:23-35. [PMID: 34844115 DOI: 10.1016/j.plaphy.2021.11.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 11/10/2021] [Accepted: 11/14/2021] [Indexed: 06/13/2023]
Abstract
Drought is one of the major abiotic stresses that threaten wheat production worldwide, especially in the Mongolian Plateau and adjacent regions. This study aims to find local wheat varieties with high yields and drought resistance at various developmental stages based on agronomic traits and drought resistance indices analysis and explore the underlining molecular mechanisms by transcriptome analysis. Our results revealed that drought stress started at the seedling stage has a greater impact on crop yields. Four types of drought responses were found among the tested varieties. Type 1 and type 2 show low tolerance to drought stress despite high or low yield in control condition, type 3 exhibits high yield under control condition but dropped significantly after drought, and type 4 displays relatively high and stable yields under control and drought conditions. Transcriptome analysis performed with the representative varieties of the four types revealed GO terms and KEGG pathways enriched among drought-triggered differential expressed genes (DEGs). A network containing 18 modules was constructed using weighted gene co-expression analysis (WGCNA). Ten modules were significantly correlated to yield by module-trait correlation, and 3 modules showed Darkhan 144 specific gene expression patterns. C2H2 zinc finger factor-recognized motifs were identified from the promoters of genes in these modules. qRT-PCR confirmed several key DEGs with specific expression patterns and physiological measurements validated the relatively low oxidative damage and high antioxidant capacity in the drought tolerant variety Dankhan 144. These findings provide an important basis for local agriculture and breeding of drought-tolerant high yield wheat varieties.
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Affiliation(s)
- Khandmaa Nergui
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Songsong Jin
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Li Zhao
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Xiaoqiang Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Tao Xu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080, China
| | - Jun Wei
- University of Chinese Academy of Sciences, Beijing, 100049, PR China; Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xiuxiu Chen
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Yang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Hui Li
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yuanyuan Wang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jie Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Tong Zhao
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Li
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Ling Tang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Runze Sun
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Xiaohua Wang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Yongxiu Liu
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China; The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xin Deng
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
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22
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Fadoul HE, Martínez Rivas FJ, Neumann K, Balazadeh S, Fernie AR, Alseekh S. Comparative Molecular and Metabolic Profiling of Two Contrasting Wheat Cultivars under Drought Stress. Int J Mol Sci 2021; 22:ijms222413287. [PMID: 34948086 PMCID: PMC8707805 DOI: 10.3390/ijms222413287] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 12/06/2021] [Accepted: 12/07/2021] [Indexed: 11/16/2022] Open
Abstract
Drought is one of the most important threats to plants and agriculture; therefore, understanding of the mechanisms of drought tolerance is crucial for breeding of new tolerant varieties. Here, we assessed the effects of a long-term water deficit stress simulated on a precision phenotyping system on some morphological criteria and metabolite traits, as well as the expression of drought associated transcriptional factors of two contrasting drought-responsive African wheat cultivars, Condor and Wadielniel. The current study showed that under drought stress Wadielniel exhibits significant higher tillering and height compared to Condor. Further, we used gas chromatography and ultra-high performance liquid chromatography mass-spectrometry to identify compounds that change between the two cultivars upon drought. Partial least square discriminant analysis (PLS-DA) revealed that 50 metabolites with a possible role in drought stress regulation were significantly changed in both cultivars under water deficit stress. These metabolites included several amino acids, most notably proline, some organic acids, and lipid classes PC 36:3 and TAG 56:9, which were significantly altered under drought stress. Here, the results discussed in the context of understanding the mechanisms involved in the drought response of wheat cultivars, as the phenotype parameters, metabolite content and expression of drought associated transcriptional factors could also be used for potential crop improvement under drought stress.
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Affiliation(s)
- Hind Emad Fadoul
- Department of Botany, Faculty of Science, University of Khartoum, Khartoum 11115, Sudan
- Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada
- Correspondence: (H.E.F.); (S.A.); Tel.: +49-331-567-8211 (S.A.)
| | - Félix Juan Martínez Rivas
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; (F.J.M.R.); (S.B.); (A.R.F.)
| | - Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland, Germany;
| | - Salma Balazadeh
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; (F.J.M.R.); (S.B.); (A.R.F.)
- Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands
| | - Alisdair R. Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; (F.J.M.R.); (S.B.); (A.R.F.)
- Center of Plant Systems Biology and Biotechnology, Ruski Blvd. 139, 4000 Plovdiv, Bulgaria
| | - Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; (F.J.M.R.); (S.B.); (A.R.F.)
- Center of Plant Systems Biology and Biotechnology, Ruski Blvd. 139, 4000 Plovdiv, Bulgaria
- Correspondence: (H.E.F.); (S.A.); Tel.: +49-331-567-8211 (S.A.)
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23
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An Efficient Method for Estimating Wheat Heading Dates Using UAV Images. REMOTE SENSING 2021. [DOI: 10.3390/rs13163067] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Convenient, efficient, and high-throughput estimation of wheat heading dates is of great significance in plant sciences and agricultural research. However, documenting heading dates is time-consuming, labor-intensive, and subjective on a large-scale field. To overcome these challenges, model- and image-based approaches are used to estimate heading dates. Phenology models usually require complicated parameters calibrations, making it difficult to model other varieties and different locations, while in situ field-image recognition usually requires the deployment of a large amount of observational equipment, which is expensive. Therefore, in this study, we proposed a growth curve-based method for estimating wheat heading dates. The method first generates a height-based continuous growth curve based on five time-series unmanned aerial vehicle (UAV) images captured over the entire wheat growth cycle (>200 d). Then estimate the heading date by generated growth curve. As a result, the proposed method had a mean absolute error of 2.81 d and a root mean square error of 3.49 d for 72 wheat plots composed of different varieties and densities sown on different dates. Thus, the proposed method is straightforward, efficient, and affordable and meets the high-throughput estimation requirements of large-scale fields and underdeveloped areas.
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24
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Yue M, Gautam M, Chen Z, Hou J, Zheng X, Hou H, Li L. Histone acetylation of 45S rDNA correlates with disrupted nucleolar organization during heat stress response in Zea mays L. PHYSIOLOGIA PLANTARUM 2021; 172:2079-2089. [PMID: 33887068 DOI: 10.1111/ppl.13438] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 04/13/2021] [Accepted: 04/19/2021] [Indexed: 06/12/2023]
Abstract
The role of the nucleolus in plant response to heat stress remains largely obscure. Our current efforts focused on exploring the underlying mechanism by which nucleolar disorganization is regulated in heat stressed-maize lines. Here, two maize lines, a heat-sensitive line, ZD958, and a heat-tolerant line, ZDH, were submitted to heat stress for investigating their association with the nucleolar disruption. Immunofluorescence staining showed that nucleolar disruption increased with prolonged treatment time. After heat treatment, a significant change in nucleolus organization was observed in the ZD958 line, but the ZDH line showed mild alteration. Moreover, actinomycin D (ActD)-induced nucleolus fission led to inhibition of maize growth under the normal condition. The ZD958 line exhibited a significant increase in the level of H3K9ac and H4K5ac of the 45S rDNA accompanied by a higher transcription of the 5'-external transcribed spacer (ETS) region, while the line ZDH showed a slight increase in histone acetylation levels and the transcriptional initiation at this site after heat treatment. To our knowledge, this is the first report providing a comparative insight between heat stress, rDNA histone modifications, and nucleolus disintegration in a heat-tolerant ZDH compared with a heat-sensitive line ZD958. Our investigation might assist maize breeders in obtaining heat-tolerant lines by targeting nucleoli using epigenetics.
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Affiliation(s)
- Mengxia Yue
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Mayank Gautam
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Zhenfei Chen
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Jiaqi Hou
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Xueke Zheng
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Haoli Hou
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Lijia Li
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
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25
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Shenoda JE, Sanad MNME, Rizkalla AA, El-Assal S, Ali RT, Hussein MH. Effect of long-term heat stress on grain yield, pollen grain viability and germinability in bread wheat ( Triticum aestivum L.) under field conditions. Heliyon 2021; 7:e07096. [PMID: 34141912 PMCID: PMC8187965 DOI: 10.1016/j.heliyon.2021.e07096] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Revised: 03/15/2021] [Accepted: 05/14/2021] [Indexed: 01/10/2023] Open
Abstract
Frequent episodes of heat threaten sustainable agriculture in Egypt. This study is an urgent call to select tolerant genotypes of heat and discover the predicted screening phenotypic parameters. Here, twenty spring wheat genotypes were exposed to heat stress under field conditions for screening heat tolerance. Stress environments were simulated by delaying the sowing date by 53 and 58 days than the normal environments for two successive seasons. Stressed plants received the highest peak of heat during the reproductive growth stage. Eight phenotypic parameters were measured to evaluate genotype tolerance. Mean performance, reduction percentage/trait, and heat susceptibility index parameters were calculated. Additionally, the pollen grain viability during spike emergence and the germinability of producing grains were investigated. Results demonstrated: (1) Highly significant differences (P < 0.01) between genotypes, treatments and genotypes by treatments in grain yield and other traits in both studied seasons, (2) significant reduction in all studied traits compared to the non-stress environment, (3) the overall yield reduction, based on grain yield/m2, was 40.17, 41.19 % in the first and second seasons, respectively, and the most tolerant genotypes were Masr2, Sids1, Giza 171 and Line 9, (4) limited impact of heat has detected on pollen grains viability and germinability, and (5) grain yield as a selection criterion for heat stress remains the most reliable yardstick.
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Affiliation(s)
- J E Shenoda
- Genetic Engineering and Biotechnology Research Division, Genetics and Cytology Department, National Research Center (NRC), Egypt
| | - Marwa N M E Sanad
- Genetic Engineering and Biotechnology Research Division, Genetics and Cytology Department, National Research Center (NRC), Egypt
| | - Aida A Rizkalla
- Genetic Engineering and Biotechnology Research Division, Genetics and Cytology Department, National Research Center (NRC), Egypt
| | - S El-Assal
- Genetics Department, Faculty of Agriculture, Cairo University, Egypt
| | - Rania T Ali
- Genetic Engineering and Biotechnology Research Division, Genetics and Cytology Department, National Research Center (NRC), Egypt
| | - Mona H Hussein
- Genetics Department, Faculty of Agriculture, Cairo University, Egypt
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26
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Obembe OS, Hendricks NP, Tack J. Decreased wheat production in the USA from climate change driven by yield losses rather than crop abandonment. PLoS One 2021; 16:e0252067. [PMID: 34138898 PMCID: PMC8211167 DOI: 10.1371/journal.pone.0252067] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 05/07/2021] [Indexed: 11/18/2022] Open
Abstract
An increase in global average surface temperature over the 21st century will affect food production. There is still uncertainty if the source of the production losses caused by climate change could be driven either by lower yield or reduced area harvested. We use county-level production data on winter wheat coupled with fine-scale weather outcomes between 1981-2007 to examine the impact of climate change on winter wheat production in Kansas. We decompose the total impact of weather variables through both the yield and harvested acreage channels. We find that an insignificant portion—both in terms of magnitude and statistical significance—of the production losses are due to reduced harvested acres (i.e., crop abandonment). The proportion harvested only account for 14.88% and 21.71% of the total damages under RCPs 4.5 and 8.5 and neither effect is statistically significant. An implication of this result implies that studies that only examine climate impacts on harvested yields are not significantly underestimating the climate change impacts on production.
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Affiliation(s)
- Oladipo S. Obembe
- College of Agriculture, Arkansas State University, Jonesboro, Arkansas, United States of America
- * E-mail:
| | - Nathan P. Hendricks
- Department of Agricultural Economics, Kansas State University, Manhattan, Kansas, United States of America
| | - Jesse Tack
- Department of Agricultural Economics, Kansas State University, Manhattan, Kansas, United States of America
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27
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Advances in Wheat Physiology in Response to Drought and the Role of Plant Growth Promoting Rhizobacteria to Trigger Drought Tolerance. Microorganisms 2021; 9:microorganisms9040687. [PMID: 33810405 PMCID: PMC8066330 DOI: 10.3390/microorganisms9040687] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 03/20/2021] [Accepted: 03/22/2021] [Indexed: 11/17/2022] Open
Abstract
In the coming century, climate change and the increasing human population are likely leading agriculture to face multiple challenges. Agricultural production has to increase while preserving natural resources and protecting the environment. Drought is one of the major abiotic problems, which limits the growth and productivity of crops and impacts 1–3% of all land.To cope with unfavorable water-deficit conditions, plants use through sophisticated and complex mechanisms that help to perceive the stress signal and enable optimal crop yield are required. Among crop production, wheat is estimated to feed about one-fifth of humanity, but faces more and more drought stress periods, partially due to climate change. Plant growth promoting rhizobacteria are a promising and interesting way to develop productive and sustainable agriculture despite environmental stress. The current review focuses on drought stress effects on wheat and how plant growth-promoting rhizobacteria trigger drought stress tolerance of wheat by highlighting several mechanisms. These bacteria can lead to better growth and higher yield through the production of phytohormones, osmolytes, antioxidants, volatile compounds, exopolysaccharides and 1-aminocyclopropane-1-carboxylate deaminase. Based on the available literature, we provide a comprehensive review of mechanisms involved in drought resilience and how bacteria may alleviate this constraint
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28
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Gómez-Candón D, Bellvert J, Royo C. Performance of the Two-Source Energy Balance (TSEB) Model as a Tool for Monitoring the Response of Durum Wheat to Drought by High-Throughput Field Phenotyping. FRONTIERS IN PLANT SCIENCE 2021; 12:658357. [PMID: 33936143 PMCID: PMC8085348 DOI: 10.3389/fpls.2021.658357] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 03/22/2021] [Indexed: 05/08/2023]
Abstract
The current lack of efficient methods for high throughput field phenotyping is a constraint on the goal of increasing durum wheat yields. This study illustrates a comprehensive methodology for phenotyping this crop's water use through the use of the two-source energy balance (TSEB) model employing very high resolution imagery. An unmanned aerial vehicle (UAV) equipped with multispectral and thermal cameras was used to phenotype 19 durum wheat cultivars grown under three contrasting irrigation treatments matching crop evapotranspiration levels (ETc): 100%ETc treatment meeting all crop water requirements (450 mm), 50%ETc treatment meeting half of them (285 mm), and a rainfed treatment (122 mm). Yield reductions of 18.3 and 48.0% were recorded in the 50%ETc and rainfed treatments, respectively, in comparison with the 100%ETc treatment. UAV flights were carried out during jointing (April 4th), anthesis (April 30th), and grain-filling (May 22nd). Remotely-sensed data were used to estimate: (1) plant height from a digital surface model (H, R 2 = 0.95, RMSE = 0.18m), (2) leaf area index from multispectral vegetation indices (LAI, R 2 = 0.78, RMSE = 0.63), and (3) actual evapotranspiration (ETa) and transpiration (T) through the TSEB model (R 2 = 0.50, RMSE = 0.24 mm/h). Compared with ground measurements, the four traits estimated at grain-filling provided a good prediction of days from sowing to heading (DH, r = 0.58-0.86), to anthesis (DA, r = 0.59-0.85) and to maturity (r = 0.67-0.95), grain-filling duration (GFD, r = 0.54-0.74), plant height (r = 0.62-0.69), number of grains per spike (NGS, r = 0.41-0.64), and thousand kernel weight (TKW, r = 0.37-0.42). The best trait to estimate yield, DH, DA, and GFD was ETa at anthesis or during grain filling. Better forecasts for yield-related traits were recorded in the irrigated treatments than in the rainfed one. These results show a promising perspective in the use of energy balance models for the phenotyping of large numbers of durum wheat genotypes under Mediterranean conditions.
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Affiliation(s)
- David Gómez-Candón
- Efficient Use of Water in Agriculture Program, Institute of Agrifood Research and Technology (IRTA), Fruitcentre, PCiTAL, Parc Científic i Tecnològic Agroalimentari de Gardeny, Lleida, Spain
- *Correspondence: David Gómez-Candón
| | - Joaquim Bellvert
- Efficient Use of Water in Agriculture Program, Institute of Agrifood Research and Technology (IRTA), Fruitcentre, PCiTAL, Parc Científic i Tecnològic Agroalimentari de Gardeny, Lleida, Spain
| | - Conxita Royo
- Sustainable Field Crops Program, Institute of Agrifood Research and Technology (IRTA), Lleida, Spain
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Khadka K, Earl HJ, Raizada MN, Navabi A. A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:715. [PMID: 32582249 PMCID: PMC7286286 DOI: 10.3389/fpls.2020.00715] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 05/06/2020] [Indexed: 05/18/2023]
Abstract
In the past, there have been drought events in different parts of the world, which have negatively influenced the productivity and production of various crops including wheat (Triticum aestivum L.), one of the world's three important cereal crops. Breeding new high yielding drought-tolerant wheat varieties is a research priority specifically in regions where climate change is predicted to result in more drought conditions. Commonly in breeding for drought tolerance, grain yield is the basis for selection, but it is a complex, late-stage trait, affected by many factors aside from drought. A strategy that evaluates genotypes for physiological responses to drought at earlier growth stages may be more targeted to drought and time efficient. Such an approach may be enabled by recent advances in high-throughput phenotyping platforms (HTPPs). In addition, the success of new genomic and molecular approaches rely on the quality of phenotypic data which is utilized to dissect the genetics of complex traits such as drought tolerance. Therefore, the first objective of this review is to describe the growth-stage based physio-morphological traits that could be targeted by breeders to develop drought-tolerant wheat genotypes. The second objective is to describe recent advances in high throughput phenotyping of drought tolerance related physio-morphological traits primarily under field conditions. We discuss how these strategies can be integrated into a comprehensive breeding program to mitigate the impacts of climate change. The review concludes that there is a need for comprehensive high throughput phenotyping of physio-morphological traits that is growth stage-based to improve the efficiency of breeding drought-tolerant wheat.
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Affiliation(s)
- Kamal Khadka
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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30
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Li Z, Tariq A, Pan K, Graciano C, Sun F, Song D, Abiodun Olatunji O. Role of Glycine max in improving drought tolerance in Zanthoxylum bungeanum. PeerJ 2020; 8:e9040. [PMID: 32411523 PMCID: PMC7207205 DOI: 10.7717/peerj.9040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 04/01/2020] [Indexed: 01/13/2023] Open
Abstract
Intercropping may improve community stability and yield under climate change. Here, we set up a field experiment to evaluate the advantages of cultivating Z anthoxylum bungeanum with Capsicum annum, and Z. bungeanum with Glycine max as intercrops, compared with cultivating Z. bungeanum in monoculture. Effects of extreme drought stress conditions on morphological, physiological, and biochemical traits of the three crop species cultivated in the three contrasting planting systems were compared. Results showed that extreme drought conditions induced negative impacts on Z. bungeanum grown in monoculture, due to reduced growth and metabolic impairment. However, limited stomatal conductance, reduced transpiration rate (Tr), and increased water use efficiency, carotenoid content, catalase activity, and accumulation of soluble sugars in Z. bungeanum indicated its adaptive strategies for tolerance of extreme drought stress conditions. Compared with cultivation in monoculture, intercropping with C. annum had positive effects on Z. bungeanum under extreme drought stress conditions, as a result of improved crown diameter, leaf relative water content (LRWC), net photosynthetic rate, and proline content, while intercropping with G. max under extreme drought stress conditions increased net CO2 assimilation rates, LRWC, Tr, and superoxide dismutase (SOD) activity. In conclusion, Z. bungeanum has an effective defense mechanism for extreme drought stress tolerance. Intercropping with G. max enhanced this tolerance potential primarily through its physio-biochemical adjustments, rather than as a result of nitrogen fixation by G. max.
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Affiliation(s)
- Zilong Li
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, China.,University of Chinese Academy of Sciences, Beijing, China.,School of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guizhou, China
| | - Akash Tariq
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.,Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, Urumqi, China.,Key Laboratory of Biogeography and Bioresource in Arid Zone, Chinese Academy of Sciences, Urumqi, Xinjiang, China.,Xinjiang Desert Plant Roots Ecology and Vegetation Restoration Laboratory, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Kaiwen Pan
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, China
| | - Corina Graciano
- Instituto de Fisiología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas Universidad Nacional de La Plata, Buenos Aires, Argentina
| | - Feng Sun
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, China
| | - Dagang Song
- Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, China
| | - Olusanya Abiodun Olatunji
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, China
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31
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Jat H, Choudhary M, Datta A, Yadav A, Meena M, Devi R, Gathala M, Jat M, McDonald A, Sharma P. Temporal changes in soil microbial properties and nutrient dynamics under climate smart agriculture practices. SOIL & TILLAGE RESEARCH 2020; 199:104595. [PMID: 32362695 PMCID: PMC7074002 DOI: 10.1016/j.still.2020.104595] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 01/31/2020] [Accepted: 02/02/2020] [Indexed: 05/27/2023]
Abstract
Climate smart agriculture (CSA) practices are emerging as sustainable alternative to conventional rice-wheat system to pull up natural resources degradation across south Asia. After five years of continuous CSA based experiment, a two years study was conducted to evaluate changes in microbial biomasses (microbial biomass carbon and nitrogen), enzyme activities (alkaline phosphatase, dehydrogenase and β-glucosidase), nutrient release and uptake (N, P and K) at different wheat crop growth stages. Effect of CSA practices was also studied for carbon mineralization in an incubation experiment. Four scenarios (Sc) were included in this study- conventional tillage (CT) based rice-wheat system (Sc1), partial CSA based rice-wheat-mungbean system (Sc2), full CSA based rice-wheat-mungbean system (Sc3), and full CSA based maize-wheat-mungbean system (Sc4). Soil samples were collected from scenarios at 0-15 and 15-30 cm depth at different growth stages of wheat crop namely sowing, crown root initiation (CRI), active tillering, panicle initiation, and harvesting. Analysis of soil was done for chemical properties viz. pH, electrical conductivity, available N, P, K, NPK uptake and mineralizable carbon and biological properties viz., microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), dehydrogenase activity (DHA), alkaline phosphatase activity (APA) and β-glucosidase. Significantly higher microbial biomass carbon (42 %) and nitrogen (79 %) were found in surface soil (0-15 cm depth) under CSA based scenarios (Sc2, Sc3 and Sc4) at harvest stage of wheat over CT based/ conventional scenario (Sc1). At surface soil, alkaline phosphatase, dehydrogenase and β-glucosidase activity was 58, 14 and 13 % higher in CSA based scenarios, respectively than CT based scenario. CSA based scenarios showed significantly higher C mineralization after 3 days of the incubation experiment at harvest. An increase of respectively 15, 48 and 17 % of N, P and K uptake was observed with CSA based scenarios than CT based scenario. At harvest stage, 7 % higher amount of dry matter was reported with full CSA based scenarios (mean of Sc2 to Sc4) compared to Sc1. Higher wheat grain yield of ∼10 % was recorded with CSA based scenarios over CT based scenario. Therefore, CSA based scenarios with improved biological properties and nutrient availability and uptake at different wheat growth stages resulted in higher yields and hence need to be popularized among the farmers.
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Affiliation(s)
- H.S. Jat
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
- International Maize and Wheat Improvement Center (CIMMYT), New Delhi, 110012, India
| | - Madhu Choudhary
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
| | - Ashim Datta
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
| | - A.K. Yadav
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
| | - M.D. Meena
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
| | - Ritu Devi
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
| | - M.K. Gathala
- International Maize and Wheat Improvement Center (CIMMYT), Dhaka, Bangladesh
| | - M.L. Jat
- International Maize and Wheat Improvement Center (CIMMYT), New Delhi, 110012, India
| | - A. McDonald
- Collage of Agriculture and Life Sciences, Corenell University, Ithaca, NY 14853
| | - P.C. Sharma
- ICAR-Central Soil Salinity Research Institute (CSSRI), Karnal, 132001, Haryana, India
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32
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Iquebal MA, Sharma P, Jasrotia RS, Jaiswal S, Kaur A, Saroha M, Angadi UB, Sheoran S, Singh R, Singh GP, Rai A, Tiwari R, Kumar D. RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat. Sci Rep 2019; 9:13917. [PMID: 31558740 PMCID: PMC6763491 DOI: 10.1038/s41598-019-49915-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 08/12/2019] [Indexed: 01/08/2023] Open
Abstract
Drought is one of the major impediments in wheat productivity. Traditional breeding and marker assisted QTL introgression had limited success. Available wheat genomic and RNA-seq data can decipher novel drought tolerance mechanisms with putative candidate gene and marker discovery. Drought is first sensed by root tissue but limited information is available about how roots respond to drought stress. In this view, two contrasting genotypes, namely, NI5439 41 (drought tolerant) and WL711 (drought susceptible) were used to generate ~78.2 GB data for the responses of wheat roots to drought. A total of 45139 DEGs, 13820 TF, 288 miRNAs, 640 pathways and 435829 putative markers were obtained. Study reveals use of such data in QTL to QTN refinement by analysis on two model drought-responsive QTLs on chromosome 3B in wheat roots possessing 18 differentially regulated genes with 190 sequence variants (173 SNPs and 17 InDels). Gene regulatory networks showed 69 hub-genes integrating ABA dependent and independent pathways controlling sensing of drought, root growth, uptake regulation, purine metabolism, thiamine metabolism and antibiotics pathways, stomatal closure and senescence. Eleven SSR markers were validated in a panel of 18 diverse wheat varieties. For effective future use of findings, web genomic resources were developed. We report RNA-Seq approach on wheat roots describing the drought response mechanisms under field drought conditions along with genomic resources, warranted in endeavour of wheat productivity.
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Affiliation(s)
- Mir Asif Iquebal
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India
| | - Pradeep Sharma
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - Rahul Singh Jasrotia
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India
| | - Sarika Jaiswal
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India
| | - Amandeep Kaur
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - Monika Saroha
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - U B Angadi
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India
| | - Sonia Sheoran
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - Rajender Singh
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - G P Singh
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - Anil Rai
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India
| | - Ratan Tiwari
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India.
| | - Dinesh Kumar
- Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, Library Avenue, PUSA, New Delhi, 110012, India.
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33
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le Roux ML, Kunert KJ, van der Vyver C, Cullis CA, Botha AM. Expression of a Small Ubiquitin-Like Modifier Protease Increases Drought Tolerance in Wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2019; 10:266. [PMID: 30906307 PMCID: PMC6418343 DOI: 10.3389/fpls.2019.00266] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 02/19/2019] [Indexed: 05/05/2023]
Abstract
Post-translation modification of proteins plays a critical role in cellular signaling processes. In recent years, the SUMO (Small Ubiquitin-Like Modifier) class of molecules has emerged as an influential mechanism for target protein management. SUMO proteases play a vital role in regulating pathway flux and are therefore ideal targets for manipulating stress-responses. In the present study, the expression of an Arabidopsis thaliana cysteine protease (OVERLY TOLERANT TO SALT-1, OTS1) in wheat (Triticum aestivum L.) has led to improved plant growth under water stress conditions. Transformed wheat (pUBI-OTS1) displayed enhanced growth and delayed senescence under water deficit when compared with untransformed Gamtoos-R genotype or plants carrying an empty vector. Transformed pUBI-OTS1 plants also maintained a high relative moisture content (RMC), had a higher photosynthesis rate, and also had a higher total chlorophyll content when compared to untransformed plants or plants carrying an empty vector. SUMOylation of total protein also increased in untransformed plants but not in the AtOTS1 transformed plants. Our results suggest that SUMO-proteases may influence an array of mechanisms in wheat to the advantage of the crop to be more tolerant to water stress caused by drought. This is the first report to elucidate SUMOylation effects in the hexaploid crop wheat (T. aestivum L.).
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Affiliation(s)
- Marlon L. le Roux
- Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
| | - Karl J. Kunert
- Department of Plant and Soil Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa
| | | | - Christopher A. Cullis
- Department of Biology, Case Western Reserve University, Cleveland, OH, United States
| | - Anna-Maria Botha
- Department of Genetics, Stellenbosch University, Stellenbosch, South Africa
- *Correspondence: Anna-Maria Botha,
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34
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Abstract
Climate change, associated with global warming, extreme weather events, and increasing incidence of weeds, pests and pathogens, is strongly influencing major cropping systems. In this challenging scenario, miscellaneous strategies are needed to expedite the rate of genetic gains with the purpose of developing novel varieties. Large plant breeding populations, efficient high-throughput technologies, big data management tools, and downstream biotechnology and molecular techniques are the pillars on which next generation breeding is based. In this review, we describe the toolbox the breeder has to face the challenges imposed by climate change, remark on the key role bioinformatics plays in the analysis and interpretation of big “omics” data, and acknowledge all the benefits that have been introduced into breeding strategies with the biotechnological and digital revolution.
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35
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Abhinandan K, Skori L, Stanic M, Hickerson NMN, Jamshed M, Samuel MA. Abiotic Stress Signaling in Wheat - An Inclusive Overview of Hormonal Interactions During Abiotic Stress Responses in Wheat. FRONTIERS IN PLANT SCIENCE 2018; 9:734. [PMID: 29942321 PMCID: PMC6004395 DOI: 10.3389/fpls.2018.00734] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 05/15/2018] [Indexed: 05/19/2023]
Abstract
Rapid global warming directly impacts agricultural productivity and poses a major challenge to the present-day agriculture. Recent climate change models predict severe losses in crop production worldwide due to the changing environment, and in wheat, this can be as large as 42 Mt/°C rise in temperature. Although wheat occupies the largest total harvested area (38.8%) among the cereals including rice and maize, its total productivity remains the lowest. The major production losses in wheat are caused more by abiotic stresses such as drought, salinity, and high temperature than by biotic insults. Thus, understanding the effects of these stresses becomes indispensable for wheat improvement programs which have depended mainly on the genetic variations present in the wheat genome through conventional breeding. Notably, recent biotechnological breakthroughs in the understanding of gene functions and access to whole genome sequences have opened new avenues for crop improvement. Despite the availability of such resources in wheat, progress is still limited to the understanding of the stress signaling mechanisms using model plants such as Arabidopsis, rice and Brachypodium and not directly using wheat as the model organism. This review presents an inclusive overview of the phenotypic and physiological changes in wheat due to various abiotic stresses followed by the current state of knowledge on the identified mechanisms of perception and signal transduction in wheat. Specifically, this review provides an in-depth analysis of different hormonal interactions and signaling observed during abiotic stress signaling in wheat.
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Affiliation(s)
| | | | | | | | | | - Marcus A. Samuel
- Department of Biological Sciences, University of Calgary, Calgary, AB, Canada
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36
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Daur I, Saad MM, Eida AA, Ahmad S, Shah ZH, Ihsan MZ, Muhammad Y, Sohrab SS, Hirt H. Boosting Alfalfa ( Medicago sativa L.) Production With Rhizobacteria From Various Plants in Saudi Arabia. Front Microbiol 2018; 9:477. [PMID: 29670582 PMCID: PMC5893776 DOI: 10.3389/fmicb.2018.00477] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 02/28/2018] [Indexed: 12/25/2022] Open
Abstract
This study focused on rhizobacteria to promote sustainable crop production in arid regions of Saudi Arabia. The study isolated 17 tightly root-adhering rhizobacteria from various plants at Hada Al Sham in Saudi Arabia. All 17 rhizobacterial isolates were confirmed as plant growth promoting rhizobacteria by classical biochemical tests. Using 16S rDNA gene sequence analyses, the strains were identified as Bacillus, Acinetobacter and Enterobacter. Subsequently, the strains were assessed for their ability to improve the physiology, nutrient uptake, growth, and yield of alfalfa plants grown under desert agriculture conditions. The field trials were conducted in a randomized complete block design. Inoculation of alfalfa with any of these 17 strains improved the relative water content; chlorophyll a; chlorophyll b; carotenoid contents; nitrogen (N), phosphorus, and potassium contents; plant height; leaf-to-stem ratio; and fresh and dry weight. Acinetobacter pittii JD-14 was most effective to increase fresh and dry weight of alfalfa by 41 and 34%, respectively, when compared to non-inoculated control plants. Nevertheless, all strains enhanced crop traits when compared to controls plants, indicating that these desert rhizobacterial strains could be used to develop an eco-friendly biofertilizer for alfalfa and possibly other crop plants to enhance sustainable production in arid regions.
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Affiliation(s)
- Ihsanullah Daur
- Department of Arid Land Agriculture, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Maged M Saad
- Desert Agriculture Initiative, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.,Agriculture Genetic Engineering Research Institute, Agriculture Research Center, Giza, Egypt
| | - Abdul Aziz Eida
- Agriculture Genetic Engineering Research Institute, Agriculture Research Center, Giza, Egypt
| | - Shakeel Ahmad
- Department of Soil and Environmental Science, Muhammad Nawaz Shareef University of Agriculture, Multan, Pakistan
| | - Zahid Hussain Shah
- Department of Arid Land Agriculture, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Muhammad Z Ihsan
- Cholistan Institute of Desert Studies, Islamia University Bahawalpur, Bahawalpur, Pakistan
| | - Yasir Muhammad
- King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Sayed S Sohrab
- King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Heribert Hirt
- Agriculture Genetic Engineering Research Institute, Agriculture Research Center, Giza, Egypt
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37
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Silvia SMG, Alfredo TP, Jorge ARV, Sócrates LP. Sustainable and technological strategies for basic cereal crops in the face of climate change: A literature review. ACTA ACUST UNITED AC 2018. [DOI: 10.5897/ajar2017.12818] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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38
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Tandazo-Yunga JV, Ruiz-González MX, Rojas JR, Capa-Mora ED, Prohens J, Alejandro JD, Acosta-Quezada PG. The impact of an extreme climatic disturbance and different fertilization treatments on plant development, phenology, and yield of two cultivar groups of Solanum betaceum Cav. PLoS One 2017; 12:e0190316. [PMID: 29287099 PMCID: PMC5747456 DOI: 10.1371/journal.pone.0190316] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Accepted: 12/12/2017] [Indexed: 11/25/2022] Open
Abstract
Changing climatic conditions impose a challenge both to biodiversity and food security. The effects of climate change affect different aspects of the plant or crop, such as morphological and phenological aspects, as well as yield. The effects of greenhouse conditions might be comparable in some cases to a permanent extreme disturbance in climate and weather, thus, contributing to our knowledge on climate change impacts on plant species. We have investigated the differences for 23 traits in two cultivar groups of an Andean traditional crop, Solanum betaceum, under two different environmental conditions that correspond to the traditional practices in the open field and three cultural managements under greenhouse conditions (no fertilization or control, organic, and mineral). We found that traditional practices in the open field are the less productive. Moreover, in warmer and drier conditions the treatment with organic fertilization was the most productive. Greenhouse conditions, however, delay production. We further identified traits that differentiate both cultivar groups and traits that are linked to either the new climate conditions or the fertilization treatments. Fruit characteristics were quite homogeneous between the two cultivar groups. Overall, our results provide insight on the consequences that climate change effects might exert on crops such as tree tomato, reveal that greenhouses can be a robust alternative for tree tomato production, and highlight the need to understand how different managements are linked to different solutions to fulfil the farmers’ demands.
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Affiliation(s)
- Joffre V. Tandazo-Yunga
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
| | - Mario X. Ruiz-González
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
- Proyecto Prometeo SENESCYT—Universidad Técnica Particular de Loja—UTPL, Departamento de CC. Biológicas, San Cayetano Alto s/n, Loja, Ecuador
- * E-mail:
| | - Jacqueline R. Rojas
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
| | - Edwin D. Capa-Mora
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
| | - Jaime Prohens
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, Valencia, Spain
| | - José D. Alejandro
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
| | - Pablo G. Acosta-Quezada
- Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Loja, Ecuador
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39
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Shavrukov Y, Kurishbayev A, Jatayev S, Shvidchenko V, Zotova L, Koekemoer F, de Groot S, Soole K, Langridge P. Early Flowering as a Drought Escape Mechanism in Plants: How Can It Aid Wheat Production? FRONTIERS IN PLANT SCIENCE 2017; 8:1950. [PMID: 29204147 PMCID: PMC5698779 DOI: 10.3389/fpls.2017.01950] [Citation(s) in RCA: 120] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Accepted: 10/30/2017] [Indexed: 05/18/2023]
Abstract
Drought escape (DE) is a classical adaptive mechanism which involves rapid plant development to enable the completion of the full life-cycle prior to a coming drought event. This strategy is widely used in populations of native plants, and is also applicable to cereal crops such as wheat. Early flowering time and a shorter vegetative phase can be very important for wheat production in conditions of terminal drought since this can minimize exposure to dehydration during the sensitive flowering and post-anthesis grain filling periods. A gradual shift toward early flowering has been observed over the last century of wheat breeding in countries with a Mediterranean-type climate and frequent terminal drought. This trend is predicted to continue for wheat production in the coming years in response to global climate warming. The advantage of early flowering wheat is apparent under conditions of impending terminal drought, and modern varieties are significantly more productive due to minimization of the risk associated with drought stress. Under favorable conditions, a short vegetative phase can result in reduced plant biomass due to the reduction in time available for photosynthetic production and seed nutrient accumulation. However, high yield potential has been reported for the development of both shallow and deep roots, representing plasticity in response to drought in combination with the early flowering trait. Wheat productivity can be high both in well-watered and drought-affected field trials, where an efficient strategy of DE was associated with quick growth, yield potential and water use efficiency. Therefore, early flowering provides a promising strategy for the production of advanced drought-adapted wheat cultivars.
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Affiliation(s)
- Yuri Shavrukov
- School of Biological Sciences, Flinders University, Bedford Park, SA, Australia
- School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Akhylbek Kurishbayev
- Faculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Satyvaldy Jatayev
- Faculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Vladimir Shvidchenko
- Faculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | - Lyudmila Zotova
- Faculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Astana, Kazakhstan
| | | | | | - Kathleen Soole
- School of Biological Sciences, Flinders University, Bedford Park, SA, Australia
| | - Peter Langridge
- School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA, Australia
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40
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Physiological and transcriptome analysis of He-Ne laser pretreated wheat seedlings in response to drought stress. Sci Rep 2017; 7:6108. [PMID: 28733678 PMCID: PMC5522386 DOI: 10.1038/s41598-017-06518-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 06/13/2017] [Indexed: 12/14/2022] Open
Abstract
Drought stress is a serious problem worldwide that reduces crop productivity. The laser has been shown to play a positive physiological role in enhancing plant seedlings tolerance to various abiotic stresses. However, little information is available about the molecular mechanism of He-Ne laser irradiation induced physiological changes for wheat adapting to drought conditions. Here, we performed a large-scale transcriptome sequencing to determine the molecular roles of He-Ne laser pretreated wheat seedlings under drought stress. There were 98.822 transcripts identified, and, among them, 820 transcripts were found to be differentially expressed in He-Ne laser pretreated wheat seedlings under drought stress compared with drought stress alone. Furthermore, most representative transcripts related to photosynthesis, nutrient uptake and transport, homeostasis control of reactive oxygen species and transcriptional regulation were expressed predominantly in He-Ne laser pretreated wheat seedlings. Thus, the up-regulated physiological processes of photosynthesis, antioxidation and osmotic accumulation because of the modified expressions of the related genes could contribute to the enhanced drought tolerance induced by He-Ne laser pretreatment. These findings will expand our understanding of the complex molecular events associated with drought tolerance conferred by laser irradiation in wheat and provide abundant genetic resources for future studies on plant adaptability to environmental stresses.
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Ihsan MZ, Ahmad SJN, Shah ZH, Rehman HM, Aslam Z, Ahuja I, Bones AM, Ahmad JN. Gene Mining for Proline Based Signaling Proteins in Cell Wall of Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2017; 8:233. [PMID: 28289422 PMCID: PMC5326801 DOI: 10.3389/fpls.2017.00233] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 02/07/2017] [Indexed: 05/29/2023]
Abstract
The cell wall (CW) as a first line of defense against biotic and abiotic stresses is of primary importance in plant biology. The proteins associated with cell walls play a significant role in determining a plant's sustainability to adverse environmental conditions. In this work, the genes encoding cell wall proteins (CWPs) in Arabidopsis were identified and functionally classified using geneMANIA and GENEVESTIGATOR with published microarrays data. This yielded 1605 genes, out of which 58 genes encoded proline-rich proteins (PRPs) and glycine-rich proteins (GRPs). Here, we have focused on the cellular compartmentalization, biological processes, and molecular functioning of proline-rich CWPs along with their expression at different plant developmental stages. The mined genes were categorized into five classes on the basis of the type of PRPs encoded in the cell wall of Arabidopsis thaliana. We review the domain structure and function of each class of protein, many with respect to the developmental stages of the plant. We have then used networks, hierarchical clustering and correlations to analyze co-expression, co-localization, genetic, and physical interactions and shared protein domains of these PRPs. This has given us further insight into these functionally important CWPs and identified a number of potentially new cell-wall related proteins in A. thaliana.
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Affiliation(s)
- Muhammad Z. Ihsan
- Cholistan Institute of Desert Studies, The Islamia University BahawalpurBahawalpur, Pakistan
| | - Samina J. N. Ahmad
- Plant Stress Physiology and Molecular Biology Lab, Department of Botany, University of Agriculture FaisalabadFaisalabad, Pakistan
- Integrated Genomics Cellular Developmental and Biotechnology Lab, Department of Entomology, University of Agriculture FaisalabadFaisalabad, Pakistan
| | - Zahid Hussain Shah
- Department of Arid Land Agriculture, Faculty of Meteorology, King Abdulaziz UniversityJeddah, Saudi Arabia
| | - Hafiz M. Rehman
- Department of Electronic and Biomedical Engineering, Chonnam National UniversityGwangju, South Korea
| | - Zubair Aslam
- Department of Agronomy, University of Agriculture FaisalabadFaisalabad, Pakistan
| | - Ishita Ahuja
- Department of Biology, Norwegian University of Science and TechnologyTrondheim, Norway
| | - Atle M. Bones
- Department of Biology, Norwegian University of Science and TechnologyTrondheim, Norway
| | - Jam N. Ahmad
- Plant Stress Physiology and Molecular Biology Lab, Department of Botany, University of Agriculture FaisalabadFaisalabad, Pakistan
- Integrated Genomics Cellular Developmental and Biotechnology Lab, Department of Entomology, University of Agriculture FaisalabadFaisalabad, Pakistan
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Li CY, Zhang RQ, Fu KY, Li C, Li C. Effects of high temperature on starch morphology and the expression of genes related to starch biosynthesis and degradation. J Cereal Sci 2017. [DOI: 10.1016/j.jcs.2016.11.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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