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Zhou T, Chang F, Li X, Yang W, Huang X, Yan J, Wu Q, Wen F, Pei J, Ma Y, Xu B. Role of auxin and gibberellin under low light in enhancing saffron corm starch degradation during sprouting. Int J Biol Macromol 2024; 279:135234. [PMID: 39218189 DOI: 10.1016/j.ijbiomac.2024.135234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 08/27/2024] [Accepted: 08/29/2024] [Indexed: 09/04/2024]
Abstract
The mechanisms by which low light accelerates starch macromolecules degradation by auxin and gibberellin (GA) in geophytes during sprouting remain largely unknown. This study investigated these mechanisms in saffron, grown under low light (50 μmol m-2 s-1) and optimal light (200 μmol m-2 s-1) during the sprouting phase. Low light reduced starch concentration in corms by 34.0 % and increased significantly sucrose levels in corms, leaves, and leaf sheaths by 19.2 %, 9.8 %, and 134.5 %, respectively. This was associated with a 33.3 % increase in GA3 level and enhanced auxin signaling. Leaves synthesized IAA under low light, which was transported to the corms to promote GA synthesis, facilitating starch degradation through a 228.7 % increase in amylase activity. Exogenous applications of GA and IAA, as well as the use of their synthesis or transport inhibitors, confirmed the synergistic role of these phytohormones in starch metabolism. The unigenes associated with GA biosynthesis and auxin signaling were upregulated under low light, highlighting the IAA-GA module role in starch degradation. Moreover, increased respiration rate and invertase activity, crucial for ATP biosynthesis and the tricarboxylic acid cycle, were consistent with the upregulation of related unigenes, suggesting that auxin signaling accelerates starch degradation by promoting energy metabolism. Upregulated of auxin signaling (CsSAUR32) and starch metabolism (CsSnRK1) genes under low light suggests that auxin directly regulate starch degradation in saffron corms. This study elucidates that low light modulates auxin and GA interactions to accelerate starch degradation in saffron corms during sprouting, offering insights for optimizing agricultural practices under suboptimal light conditions.
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Affiliation(s)
- Tao Zhou
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Fei Chang
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Xin Li
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Weijing Yang
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Xulong Huang
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Jie Yan
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Qinghua Wu
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Feiyan Wen
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China
| | - Jin Pei
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China.
| | - Yuntong Ma
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China; College of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China.
| | - Binjie Xu
- Innovative institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, Sichuan, China.
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Martínez-Vasallo C, Cole B, Pérez-Alemany J, Ortiz-Ramírez CI, Gallego-Bartolomé J, Chory J, Kay SA, Nohales MA. GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function. Proc Natl Acad Sci U S A 2024; 121:e2315778121. [PMID: 39012827 PMCID: PMC11287147 DOI: 10.1073/pnas.2315778121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 06/11/2024] [Indexed: 07/18/2024] Open
Abstract
For plants adapted to bright light, a decrease in the amount of light received can be detrimental to their growth and survival. Consequently, in response to shade from surrounding vegetation, they initiate a suite of molecular and morphological changes known as the shade avoidance response through which stems and petioles elongate in search for light. Under sunlight-night cycles, the plant's responsiveness to shade varies across the day, being maximal at dusk time. While a role for the circadian clock in this regulation has long been proposed, mechanistic understanding of how it is achieved is incomplete. Here, we show that the clock component GIGANTEA (GI) directly interacts with the transcriptional regulator PHYTOCHROME INTERACTING FACTOR 7 (PIF7), a key player in the response to shade. GI represses PIF7 transcriptional activity and the expression of its target genes in response to shade, thereby fine-tuning the magnitude of the response to limiting light conditions. We find that under light/dark cycles, this function of GI is required to adequately modulate the gating of the response to shade at dusk. Importantly, we also show that this circuit primarily operates in epidermal cells, highlighting the relevance of tissue-specific clock-output connections for the regulation of plant development in resonance with the environment.
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Affiliation(s)
- Carlos Martínez-Vasallo
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas–Universidad Politécnica de Valencia, Valencia46022, Spain
| | - Benjamin Cole
- Department of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA90089
| | - Jaime Pérez-Alemany
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas–Universidad Politécnica de Valencia, Valencia46022, Spain
| | - Clara I. Ortiz-Ramírez
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas–Universidad Politécnica de Valencia, Valencia46022, Spain
| | - Javier Gallego-Bartolomé
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas–Universidad Politécnica de Valencia, Valencia46022, Spain
| | - Joanne Chory
- Plant Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA92037
- HHMI, La Jolla, CA92037
| | - Steve A. Kay
- Department of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA90089
| | - Maria A. Nohales
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas–Universidad Politécnica de Valencia, Valencia46022, Spain
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3
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Kamran M, Melville KT, Waters MT. Karrikin signalling: impacts on plant development and abiotic stress tolerance. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1174-1186. [PMID: 38001035 PMCID: PMC10860534 DOI: 10.1093/jxb/erad476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 11/23/2023] [Indexed: 11/26/2023]
Abstract
Plants rely upon a diverse range of metabolites to control growth and development, and to overcome stress that results from suboptimal conditions. Karrikins (KARs) are a class of butenolide compounds found in smoke that stimulate seed germination and regulate various developmental processes in plants. KARs are perceived via a plant α/β-hydrolase called KARRIKIN INSENSITIVE2 (KAI2), which also functions as a receptor for a postulated phytohormone, provisionally termed KAI2 ligand (KL). Considered natural analogues of KL, KARs have been extensively studied for their effects on plant growth and their crosstalk with plant hormones. The perception and response pathway for KAR-KL signalling is closely related to that of strigolactones, another class of butenolides with numerous functions in regulating plant growth. KAR-KL signalling influences seed germination, seedling photomorphogenesis, root system architecture, abiotic stress responses, and arbuscular mycorrhizal symbiosis. Here, we summarize current knowledge of KAR-KL signalling, focusing on its role in plant development, its effects on stress tolerance, and its interaction with other signalling mechanisms.
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Affiliation(s)
- Muhammad Kamran
- School of Molecular Sciences, The University of Western Australia, Perth, WA 6009, Australia
| | - Kim T Melville
- School of Molecular Sciences, The University of Western Australia, Perth, WA 6009, Australia
| | - Mark T Waters
- School of Molecular Sciences, The University of Western Australia, Perth, WA 6009, Australia
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Pashkovskiy P, Vereshchagin M, Kartashov A, Ivanov Y, Ivanova A, Zlobin I, Abramova A, Ashikhmina D, Glushko G, Kreslavski VD, Kuznetsov VV. Influence of Additional White, Red and Far-Red Light on Growth, Secondary Metabolites and Expression of Hormone Signaling Genes in Scots Pine under Sunlight. Cells 2024; 13:194. [PMID: 38275819 PMCID: PMC10813845 DOI: 10.3390/cells13020194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/11/2024] [Accepted: 01/17/2024] [Indexed: 01/27/2024] Open
Abstract
The influence of short-term additional white (WL), red (RL) and far-red (FRL) light and combined RL+FRL on the physiological morphological and molecular characteristics of two-year-old Scots pine plants grown in a greenhouse under sunlight was studied. Additional RL and RL+FRL increased the number of xylem cells, transpiration and the expression of a group of genes responsible for the biosynthesis and signaling of auxins (AUX/IAA, ARF3/4, and ARF16) and brassinosteroids (BR-α-RED and BRZ2), while the expression of genes related to the signaling pathway related to jasmonic acid was reduced. Additionally, WL, RL and RL+FRL increased the content of proanthocyanidins and catechins in young needles; however, an increase in the expression of the chalcone synthase gene (CHS) was found under RL, especially under RL+FRL, which possibly indicates a greater influence of light intensity than observed in the spectrum. Additional WL increased photosynthetic activity, presumably by increasing the proportion and intensity of blue light; at the same time, the highest transpiration index was found under RL. The results obtained indicate that the combined effect of additional RL+FRL can accelerate the development of pine plants by increasing the number of xylem cells and increasing the number of aboveground parts but not the photosynthetic activity or the accumulation of secondary metabolites.
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Affiliation(s)
- Pavel Pashkovskiy
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Mikhail Vereshchagin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Alexander Kartashov
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Yury Ivanov
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Alexandra Ivanova
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Ilya Zlobin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Anna Abramova
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Darya Ashikhmina
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Galina Glushko
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
| | - Vladimir D. Kreslavski
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino 142290, Russia;
| | - Vladimir V. Kuznetsov
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; (P.P.); (M.V.); (A.K.); (Y.I.); (A.I.); (I.Z.); (A.A.); (D.A.); (G.G.)
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Tomsk 634050, Russia
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Wang Y, Jiang Z, Li W, Yang X, Li C, Cai D, Pan Y, Su W, Chen R. Supplementary Low Far-Red Light Promotes Proliferation and Photosynthetic Capacity of Blueberry In Vitro Plantlets. Int J Mol Sci 2024; 25:688. [PMID: 38255762 PMCID: PMC10815622 DOI: 10.3390/ijms25020688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 12/30/2023] [Accepted: 01/01/2024] [Indexed: 01/24/2024] Open
Abstract
Far-red light exerts an important regulatory influence on plant growth and development. However, the mechanisms underlying far-red light regulation of morphogenesis and photosynthetic characteristics in blueberry plantlets in vitro have remained elusive. Here, physiological and transcriptomic analyses were conducted on blueberry plantlets in vitro supplemented with far-red light. The results indicated that supplementation with low far-red light, such as 6 μmol m-2 s-1 and 14 μmol m-2 s-1 far-red (6FR and 14FR) light treatments, significantly increased proliferation-related indicators, including shoot length, shoot number, gibberellin A3, and trans-zeatin riboside content. It was found that 6FR and 14 FR significantly reduced chlorophyll content in blueberry plantlets but enhanced electron transport rates. Weighted correlation network analysis (WGCNA) showed the enrichment of iron ion-related genes in modules associated with photosynthesis. Genes such as NAC, ABCG11, GASA1, and Erf74 were significantly enriched within the proliferation-related module. Taken together, we conclude that low far-red light can promote the proliferative capacity of blueberry plantlets in vitro by affecting hormone pathways and the formation of secondary cell walls, concurrently regulating chlorophyll content and iron ion homeostasis to affect photosynthetic capacity.
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Affiliation(s)
| | | | | | | | | | | | | | - Wei Su
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (Y.W.); (Z.J.); (W.L.); (X.Y.); (C.L.); (D.C.); (Y.P.)
| | - Riyuan Chen
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (Y.W.); (Z.J.); (W.L.); (X.Y.); (C.L.); (D.C.); (Y.P.)
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Li J, Yang J, Gao Y, Zhang Z, Gao C, Chen S, Liesche J. Parallel auxin transport via PINs and plasmodesmata during the Arabidopsis leaf hyponasty response. PLANT CELL REPORTS 2023; 43:4. [PMID: 38117314 PMCID: PMC10733227 DOI: 10.1007/s00299-023-03119-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 11/22/2023] [Indexed: 12/21/2023]
Abstract
KEY MESSAGE The leaf hyponasty response depends on tip-to-petiole auxin transport. This transport can happen through two parallel pathways: active trans-membrane transport mediated by PIN proteins and passive diffusion through plasmodesmata. A plant's ability to counteract potential shading by neighboring plants depends on transport of the hormone auxin. Neighbor sensing at the leaf tip triggers auxin production. Once this auxin reaches the abaxial petiole epidermis, it causes cell elongation, which leads to leaf hyponasty. Two pathways are known to contribute to this intercellular tip-to-petiole auxin movement: (i) transport facilitated by plasma membrane-localized PIN auxin transporters and (ii) diffusion enabled by plasmodesmata. We tested if these two modes of transport are arranged sequentially or in parallel. Moreover, we investigated if they are functionally linked. Mutants in which one of the two pathways is disrupted indicated that both pathways are necessary for a full hyponasty response. Visualization of PIN3-GFP and PIN7-GFP localization indicated PIN-mediated transport in parallel to plasmodesmata-mediated transport along abaxial midrib epidermis cells. We found plasmodesmata-mediated cell coupling in the pin3pin4pin7 mutant to match wild-type levels, indicating no redundancy between pathways. Similarly, PIN3, PIN4 and PIN7 mRNA levels were unaffected in a mutant with disrupted plasmodesmata pathway. Our results provide mechanistic insight on leaf hyponasty, which might facilitate the manipulation of the shade avoidance response in crops.
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Affiliation(s)
- Jiazhou Li
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A & F University, Yangling, 712100, China
- State Key Laboratory of Stress Biology for Arid Areas, Northwest A & F University, Yangling, 712100, China
| | - Jintao Yang
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A & F University, Yangling, 712100, China
- State Key Laboratory of Stress Biology for Arid Areas, Northwest A & F University, Yangling, 712100, China
| | - Yibo Gao
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China
| | - Ziyu Zhang
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China
| | - Chen Gao
- Institute for Molecular Physiology, University of Düsseldorf, 40225, Düsseldorf, Germany
| | - Shaolin Chen
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A & F University, Yangling, 712100, China
| | - Johannes Liesche
- College of Life Sciences, Northwest A & F University, Yangling, 712100, China.
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A & F University, Yangling, 712100, China.
- State Key Laboratory of Stress Biology for Arid Areas, Northwest A & F University, Yangling, 712100, China.
- Institute of Biology, University of Graz, Schubertstraße 51, 8010, Graz, Austria.
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He X, Solis CA, Chavan SG, Maier C, Wang Y, Liang W, Klause N, Ghannoum O, Cazzonelli CI, Tissue DT, Chen ZH. Novel transcriptome networks are associated with adaptation of capsicum fruit development to a light-blocking glasshouse film. FRONTIERS IN PLANT SCIENCE 2023; 14:1280314. [PMID: 38023880 PMCID: PMC10658010 DOI: 10.3389/fpls.2023.1280314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Accepted: 10/13/2023] [Indexed: 12/01/2023]
Abstract
Light-blocking films (LBFs) can contribute to significant energy savings for protected cropping via altering light transmitting, such as UVA, photosynthetically active radiation, blue and red spectra affecting photosynthesis, and capsicum yield. Here, we investigated the effects of LBF on orange color capsicum (O06614, Capsicum annuum L.) fruit transcriptome at 35 (mature green) and 65 (mature ripe) days after pollination (DAP) relative to untreated control in a high-technology glasshouse. The results of targeted metabolites showed that LBF significantly promotes the percentage of lutein but decreased the percentage of zeaxanthin and neoxanthin only at 35 DAP. At 35 DAP, fruits were less impacted by LBF treatment (versus control) with a total of 1,192 differentially expressed genes (DEGs) compared with that at 65 DAP with 2,654 DEGs. Response to stress and response to light stimulus in biological process of Gene Ontology were found in 65-DAP fruits under LBF vs. control, and clustering analysis revealed a predominant role of light receptors and phytohormone signaling transduction as well as starch and sucrose metabolism in LBF adaptation. The light-signaling DEGs, UV light receptor UVR8, transcription factors phytochrome-interacting factor 4 (PIF4), and an E3 ubiquitin ligase (COP1) were significantly downregulated at 65 DAP. Moreover, key DEGs in starch and sucrose metabolism (SUS, SUC, and INV), carotenoid synthesis (PSY2 and BCH1), ascorbic acid biosynthesis (VTC2, AAO, and GME), abscisic acid (ABA) signaling (NCED3, ABA2, AO4, and PYL2/4), and phenylpropanoid biosynthesis (PAL and DFR) are important for the adaptation of 65-DAP fruits to LBF. Our results provide new candidate genes for improving quality traits of low-light adaptation of capsicum in protected cropping.
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Affiliation(s)
- Xin He
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Celymar A. Solis
- School of Science, Western Sydney University, Penrith, NSW, Australia
| | - Sachin G. Chavan
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Chelsea Maier
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Yuanyuan Wang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Weiguang Liang
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Norbert Klause
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Oula Ghannoum
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Christopher I. Cazzonelli
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - David T. Tissue
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Global Centre for Land Based Innovation, Western Sydney University, Richmond, NSW, Australia
| | - Zhong-Hua Chen
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- School of Science, Western Sydney University, Penrith, NSW, Australia
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Nguyen NH, Sng BJR, Chin HJ, Choi IKY, Yeo HC, Jang IC. HISTONE DEACETYLASE 9 promotes hypocotyl-specific auxin response under shade. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 116:804-822. [PMID: 37522556 DOI: 10.1111/tpj.16410] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 07/13/2023] [Accepted: 07/19/2023] [Indexed: 08/01/2023]
Abstract
Vegetative shade causes an array of morphological changes in plants called shade avoidance syndrome, which includes hypocotyl and petiole elongation, leaf hyponasty, reduced leaf growth, early flowering and rapid senescence. Here, we show that loss-of-function mutations in HISTONE DEACETYLASE 9 (HDA9) attenuated the shade-induced hypocotyl elongation in Arabidopsis. However, the hda9 cotyledons and petioles under shade were not significantly different from those in wild-type, suggesting a specific function of HDA9 in hypocotyl elongation in response to shade. HDA9 expression levels were stable under shade and its protein was ubiquitously detected in cotyledon, hypocotyl and root. Organ-specific transcriptome analysis unraveled that shade induced a set of auxin-responsive genes, such as SMALL AUXIN UPREGULATED RNAs (SAURs) and AUXIN/INDOLE-3-ACETIC ACIDs (AUX/IAAs) and their induction was impaired in hda9-1 hypocotyls. In addition, HDA9 binding to loci of SAUR15/65, IAA5/6/19 and ACS4 was increased under shade. The genetic and organ-specific gene expression analyses further revealed that HDA9 may cooperate with PHYTOCHROME-INTERACTING FACTOR 4/7 in the regulation of shade-induced hypocotyl elongation. Furthermore, HDA9 and PIF7 proteins were found to interact together and thus it is suggested that PIF7 may recruit HDA9 to regulate the shade/auxin responsive genes in response to shade. Overall, our study unravels that HDA9 can work as one component of a hypocotyl-specific transcriptional regulatory machinery that activates the auxin response at the hypocotyl leading to the elongation of this organ under shade.
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Affiliation(s)
- Nguyen Hoai Nguyen
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
| | - Benny Jian Rong Sng
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore
| | - Hui Jun Chin
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
| | - Ian Kin Yuen Choi
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore
| | - Hock Chuan Yeo
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
| | - In-Cheol Jang
- Temasek Life Sciences Laboratory, National University of Singapore, 1 Research Link, Singapore, 117604, Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore
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Xing Y, Cao Y, Ma Y, Wang F, Xin S, Zhu W. QTL mapping and transcriptomic analysis of fruit length in cucumber. FRONTIERS IN PLANT SCIENCE 2023; 14:1208675. [PMID: 37670860 PMCID: PMC10475832 DOI: 10.3389/fpls.2023.1208675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 07/21/2023] [Indexed: 09/07/2023]
Abstract
A total of 151 recombinant inbred lines (RILs) were derived from the cross between 'Cucumis sativus L. hardwickii' (HW) and a cultivated Northern Chinese inbred line 'XinTaiMiCi' (XTMC). We used resequencing to construct the genetic map and analyze the genetic background of RIL population, and combined with the phenotypes of RIL population and the analysis of RNA-seq data, we located the major loci controlling the fruit length of cucumber and related analysis. A genetic map containing 600 bin markers was constructed via re-sequencing. Based on the phenotype data collected in two different seasons (spring 2021 and autumn 2022), the major quantitative trait loci (QTLs) controlling cucumber fruit length were located and their transcriptomic analysis carried out. The results revealed three QTLs (Fl2.1, Fl4.1, and Fl6.1) detected repeatedly in the two seasons, of which Fl4.1 was the dominant QTL. From the functional annotation of corresponding genes there, we discovered the gene Csa4G337340 encoding an auxin efflux carrier family protein. The expression of that gene was significantly lower in XTMC and the long-fruit RIL lines than in HW and the short-fruit RIL lines; hence, we speculated the gene could be negatively correlated with the fruit length of cucumber. Transcriptomic analysis showed that 259 differentially expressed genes (DEGs) were enriched in the plant hormone signal transduction pathway. In addition, among those DEGs, 509 transcription factors were detected, these distributed in several transcription factor gene families, such as bHLH, AP2/ErF -ERF, C2H2, and NAC. Therefore, we concluded that the major gene controlling the fruit length of cucumber is located in the interval of Fl4.1, whose gene Csa4G337340 may be involved in the negative regulation of fruit length. Further, genes related to plant hormone signal transduction and several transcription factors were also found involved in the regulation of cucumber fruit length. Our results provide a reference for the fine mapping of major genes and analyzing the mechanism of cucumber fruit length.
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Affiliation(s)
- Yanan Xing
- Qingdao Agricultural University, Qingdao, China
| | - Yilin Cao
- Qingdao Agricultural University, Qingdao, China
| | - Yanan Ma
- Qingdao Agricultural University, Qingdao, China
| | - Fu Wang
- Qingdao Agricultural University, Qingdao, China
- Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, China
| | - Shijie Xin
- Yantai Yeda Investment Development Group Co., Ltd, Yantai, China
| | - Wenying Zhu
- Qingdao Agricultural University, Qingdao, China
- Engineering Laboratory of Genetic Improvement of Horticultural Crops of Shandong Province, Qingdao, China
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10
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Kurepa J, Smalle JA. Plant Hormone Modularity and the Survival-Reproduction Trade-Off. BIOLOGY 2023; 12:1143. [PMID: 37627027 PMCID: PMC10452219 DOI: 10.3390/biology12081143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 08/07/2023] [Accepted: 08/15/2023] [Indexed: 08/27/2023]
Abstract
Biological modularity refers to the organization of living systems into separate functional units that interact in different combinations to promote individual well-being and species survival. Modularity provides a framework for generating and selecting variations that can lead to adaptive evolution. While the exact mechanisms underlying the evolution of modularity are still being explored, it is believed that the pressure of conflicting demands on limited resources is a primary selection force. One prominent example of conflicting demands is the trade-off between survival and reproduction. In this review, we explore the available evidence regarding the modularity of plant hormones within the context of the survival-reproduction trade-off. Our findings reveal that the cytokinin module is dedicated to maximizing reproduction, while the remaining hormone modules function to ensure reproduction. The signaling mechanisms of these hormone modules reflect their roles in this survival-reproduction trade-off. While the cytokinin response pathway exhibits a sequence of activation events that aligns with the developmental robustness expected from a hormone focused on reproduction, the remaining hormone modules employ double-negative signaling mechanisms, which reflects the necessity to prevent the excessive allocation of resources to survival.
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Affiliation(s)
| | - Jan A. Smalle
- Plant Physiology, Biochemistry, Molecular Biology Program, Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546, USA;
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11
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Korobova A, Ivanov R, Timergalina L, Vysotskaya L, Nuzhnaya T, Akhiyarova G, Kusnetsov V, Veselov D, Kudoyarova G. Effect of Low Light Stress on Distribution of Auxin (Indole-3-acetic Acid) between Shoot and Roots and Development of Lateral Roots in Barley Plants. BIOLOGY 2023; 12:787. [PMID: 37372072 DOI: 10.3390/biology12060787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 05/26/2023] [Accepted: 05/28/2023] [Indexed: 06/29/2023]
Abstract
Depending on their habitat conditions, plants can greatly change the growth rate of their roots. However, the mechanisms of such responses remain insufficiently clear. The influence of a low level of illumination on the content of endogenous auxins, their localization in leaves and transport from shoots to roots were studied and related to the lateral root branching of barley plants. Following two days' reduction in illumination, a 10-fold reduction in the emergence of lateral roots was found. Auxin (IAA, indole-3-acetic acid) content decreased by 84% in roots and by 30% in shoots, and immunolocalization revealed lowered IAA levels in phloem cells of leaf sections. The reduced content of IAA found in the plants under low light suggests an inhibition of production of this hormone under these conditions. At the same time, two-fold downregulation of the LAX3 gene expression, facilitating IAA influx into the cells, was detected in the roots, as well as a decline in auxin diffusion from shoots through the phloem by about 60%. It was suggested that the reduced emergence of lateral roots in barley under a low level of illumination was due to a disturbance of auxin transport through the phloem and down-regulation of the genes responsible for auxin transport in plant roots. The results confirm the importance of the long distance transport of auxins for the control of the growth of roots under conditions of low light. Further study of the mechanisms that control the transport of auxins from shoots to roots in other plant species is required.
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Affiliation(s)
- Alla Korobova
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Ruslan Ivanov
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Leila Timergalina
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Lidiya Vysotskaya
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Tatiana Nuzhnaya
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Guzel Akhiyarova
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Victor Kusnetsov
- K.A. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., 127276 Moscow, Russia
| | - Dmitry Veselov
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
| | - Guzel Kudoyarova
- Ufa Institute of Biology, Ufa Federal Research Centre RAS, 69 Pr. Octyabrya, 450054 Ufa, Russia
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12
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Driesen E, Saeys W, De Proft M, Lauwers A, Van den Ende W. Far-Red Light Mediated Carbohydrate Concentration Changes in Leaves of Sweet Basil, a Stachyose Translocating Plant. Int J Mol Sci 2023; 24:ijms24098378. [PMID: 37176086 PMCID: PMC10179449 DOI: 10.3390/ijms24098378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 05/02/2023] [Accepted: 05/03/2023] [Indexed: 05/15/2023] Open
Abstract
Photosynthetic active radiation (PAR) refers to photons between 400 and 700 nm. These photons drive photosynthesis, providing carbohydrates for plant metabolism and development. Far-red radiation (FR, 701-750 nm) is excluded in this definition because no FR is absorbed by the plant photosynthetic pigments. However, including FR in the light spectrum provides substantial benefits for biomass production and resource-use efficiency. We investigated the effects of continuous FR addition and end-of-day additional FR to a broad white light spectrum (BW) on carbohydrate concentrations in the top and bottom leaves of sweet basil (Ocimum basilicum L.), a species that produces the raffinose family oligosaccharides raffinose and stachyose and preferentially uses the latter as transport sugar. Glucose, fructose, sucrose, raffinose, and starch concentrations increased significantly in top and bottom leaves with the addition of FR light. The increased carbohydrate pools under FR light treatments are associated with more efficient stachyose production and potentially improved phloem loading through increased sucrose homeostasis in intermediary cells. The combination of a high biomass yield, increased resource-use efficiency, and increased carbohydrate concentration in leaves in response to the addition of FR light offers opportunities for commercial plant production in controlled growth environments.
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Affiliation(s)
- Elisa Driesen
- KU Leuven, Department of Biosystems, Willem De Croylaan 42, 3001 Leuven, Belgium
| | - Wouter Saeys
- KU Leuven, Department of Biosystems, Willem De Croylaan 42, 3001 Leuven, Belgium
| | - Maurice De Proft
- KU Leuven, Department of Biosystems, Willem De Croylaan 42, 3001 Leuven, Belgium
| | | | - Wim Van den Ende
- KU Leuven, Laboratory of Molecular Plant Biology, Kasteelpark Arenberg 31, 3001 Leuven, Belgium
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13
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Shapulatov U, van Zanten M, van Hoogdalem M, Meisenburg M, van Hall A, Kappers I, Fasano C, Facella P, Loh CC, Perrella G, van der Krol A. The Mediator complex subunit MED25 interacts with HDA9 and PIF4 to regulate thermomorphogenesis. PLANT PHYSIOLOGY 2023; 192:582-600. [PMID: 36537119 PMCID: PMC10152658 DOI: 10.1093/plphys/kiac581] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 10/27/2022] [Accepted: 11/01/2022] [Indexed: 05/03/2023]
Abstract
Thermomorphogenesis is, among other traits, characterized by enhanced hypocotyl elongation due to the induction of auxin biosynthesis genes like YUCCA8 by transcription factors, most notably PHYTOCHROME INTERACTING FACTOR 4 (PIF4). Efficient binding of PIF4 to the YUCCA8 locus under warmth depends on HISTONE DEACETYLASE 9 (HDA9) activity, which mediates histone H2A.Z depletion at the YUCCA8 locus. However, HDA9 lacks intrinsic DNA-binding capacity, and how HDA9 is recruited to YUCCA8, and possibly other PIF4-target sites, is currently not well understood. The Mediator complex functions as a bridge between transcription factors bound to specific promoter sequences and the basal transcription machinery containing RNA polymerase II. Mutants of Mediator component Mediator25 (MED25) exhibit reduced hypocotyl elongation and reduced expression of YUCCA8 at 27°C. In line with a proposed role for MED25 in thermomorphogenesis in Arabidopsis (Arabidopsis thaliana), we demonstrated an enhanced association of MED25 to the YUCCA8 locus under warmth and interaction of MED25 with both PIF4 and HDA9. Genetic analysis confirmed that MED25 and HDA9 operate in the same pathway. Intriguingly, we also showed that MED25 destabilizes HDA9 protein. Based on our findings, we propose that MED25 recruits HDA9 to the YUCCA8 locus by binding to both PIF4 and HDA9.
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Affiliation(s)
- Umidjon Shapulatov
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
- Temasek Life Science Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Singapore
| | - Martijn van Zanten
- Plant Stress Resilience, Institute of Environmental Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands
| | - Mark van Hoogdalem
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Mara Meisenburg
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Alexander van Hall
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Iris Kappers
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Carlo Fasano
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy
| | - Paolo Facella
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy
| | - Chi Cheng Loh
- Temasek Life Science Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Singapore
| | - Giorgio Perrella
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy
| | - Alexander van der Krol
- Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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14
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Martínez-Vasallo C, Cole B, Gallego-Bartolomé J, Chory J, Kay SA, Nohales MA. Epidermal GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.21.533699. [PMID: 36993677 PMCID: PMC10055326 DOI: 10.1101/2023.03.21.533699] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
For plants adapted to bright light, a decrease in the amount of light received can be detrimental to their growth and survival. Consequently, in response to shade from surrounding vegetation, they initiate a suite of molecular and morphological changes known as the shade avoidance response (SAR) through which stems and petioles elongate in search for light. Under sunlight-night cycles, the plant's responsiveness to shade varies across the day, being maximal at dusk time. While a role for the circadian clock in this regulation has long been proposed, mechanistic understanding of how it is achieved is incomplete. Here we show that the clock component GIGANTEA (GI) directly interacts with the transcriptional regulator PHYTOCHROME INTERACTING FACTOR 7 (PIF7), a key player in the response to shade. GI represses PIF7 transcriptional activity and the expression of its target genes in response to shade, thereby fine-tuning the magnitude of the response to limiting light conditions. We find that, under light/dark cycles, this function of GI is required to adequately modulate the gating of the response to shade at dusk. Importantly, we also show that GI expression in epidermal cells is sufficient for proper SAR regulation.
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Affiliation(s)
- Carlos Martínez-Vasallo
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas - Universidad Politécnica de Valencia, 46022 Valencia, Spain
| | - Benjamin Cole
- Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA
| | - Javier Gallego-Bartolomé
- Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
| | - Joanne Chory
- Plant Biology Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
- Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - Steve A. Kay
- Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA
| | - Maria A. Nohales
- Instituto de Biologίa Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientίficas - Universidad Politécnica de Valencia, 46022 Valencia, Spain
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15
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Cerqueira JVA, Zhu F, Mendes K, Nunes-Nesi A, Martins SCV, Benedito V, Fernie AR, Zsögön A. Promoter replacement of ANT1 induces anthocyanin accumulation and triggers the shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. HORTICULTURE RESEARCH 2023; 10:uhac254. [PMID: 36751272 PMCID: PMC9896602 DOI: 10.1093/hr/uhac254] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Accepted: 11/07/2022] [Indexed: 06/18/2023]
Abstract
The accumulation of anthocyanins is a well-known response to abiotic stresses in many plant species. However, the effects of anthocyanin accumulation on light absorbance and photosynthesis are unknown . Here, we addressed this question using a promoter replacement line of tomato constitutively expressing a MYB transcription factor (ANTHOCYANIN1, ANT1) that leads to anthocyanin accumulation. ANT1-overexpressing plants displayed traits associated with shade avoidance response: thinner leaves, lower seed germination rate, suppressed side branching, increased chlorophyll concentration, and lower photosynthesis rates than the wild type. Anthocyanin-rich leaves exhibited higher absorbance of light in the blue and red ends of the spectrum, while higher anthocyanin content in leaves provided photoprotection to high irradiance. Analyses of gene expression and primary metabolites content showed that anthocyanin accumulation produces a reconfiguration of transcriptional and metabolic networks that is consistent with, but not identical to those described for the shade avoidance response. Our results provide novel insights about how anthocyanins accumulation affects the trade-off between photoprotection and growth.
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Affiliation(s)
| | - Feng Zhu
- National R&D Center for Citrus Preservation, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, 430070 Wuhan, China
- Max-Planck-Institute for Molecular Plant Physiology, 14476 Potsdam, Germany
| | - Karoline Mendes
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa 36570-900 MG, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa 36570-900 MG, Brazil
| | | | - Vagner Benedito
- Division of Plant & Soil Sciences, West Virginia University, Morgantown, WV 26506, USA
| | - Alisdair R Fernie
- Max-Planck-Institute for Molecular Plant Physiology, 14476 Potsdam, Germany
| | - Agustin Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa 36570-900 MG, Brazil
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16
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Son O, Zhang C, Yang X, Duc LT, Hur YS, Nam KH, Choi SY, Cheon CI, Kim S. Identification of GA20ox2 as a target of ATHB2 and TCP13 during shade response. FRONTIERS IN PLANT SCIENCE 2023; 14:1158288. [PMID: 37152153 PMCID: PMC10160606 DOI: 10.3389/fpls.2023.1158288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 04/03/2023] [Indexed: 05/09/2023]
Abstract
The shade avoidance syndrome (SAS) is a collective adaptive response of plants under shade highlighted by characteristic phenotypes such as hypocotyl elongation, which is largely mediated by concerted actions of auxin and GA. We identified ATHB2, a homeodomain-leucine zipper (HD-Zip) domain transcription factor known to be rapidly induced under shade condition, as a positive regulator of GA biosynthesis necessary for the SAS by transactivating the expression of GA20ox2, a key gene in the GA biosynthesis pathway. Based on promoter deletion analysis, EMSA and ChIP assay, ATHB2 appears to regulate the GA20ox2 expression as a direct binding target. We also found that the GA20ox2 expression is under negative control by TCP13, the effect of which can be suppressed by presence of ATHB2. Considering a rapid induction kinetics of ATHB2, this relationship between ATHB2 and TCP13 may allow ATHB2 to play a shade-specific activator for GA20ox by derepressing a pre-existing activity of TCP13.
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Affiliation(s)
- Ora Son
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Chaoyue Zhang
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Xiaoyu Yang
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Le Thi Duc
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Yoon-Sun Hur
- Department of Systems Biology, Yonsei University, Seoul, Republic of Korea
| | - Kyoung Hee Nam
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Soon-Young Choi
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
| | - Choong-Ill Cheon
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
- *Correspondence: Sunghan Kim, ; Choong-Ill Cheon,
| | - Sunghan Kim
- Department of Biological Science and Institute of Women’s Health, Sookmyung Women’s University, Seoul, Republic of Korea
- *Correspondence: Sunghan Kim, ; Choong-Ill Cheon,
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17
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Ahres M, Pálmai T, Kovács T, Kovács L, Lacek J, Vankova R, Galiba G, Borbély P. The Effect of White Light Spectrum Modifications by Excess of Blue Light on the Frost Tolerance, Lipid- and Hormone Composition of Barley in the Early Pre-Hardening Phase. PLANTS (BASEL, SWITZERLAND) 2022; 12:40. [PMID: 36616169 PMCID: PMC9823678 DOI: 10.3390/plants12010040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 12/15/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
Abstract
It is well established that cold acclimation processes are highly influenced, apart from cold ambient temperatures, by light-dependent environmental factors. In this study we investigated whether an extra blue (B) light supplementation would be able to further improve the well-documented freezing tolerance enhancing effect of far-red (FR) enriched white (W) light. The impact of B and FR light supplementation to white light (WFRB) on hormone levels and lipid contents were determined in winter barley at moderate (15 °C) and low (5 °C) temperatures. Low R:FR ratio effectively induced frost tolerance in barley plantlets, but additional B light further enhanced frost hardiness at both temperatures. Supplementation of WFR (white light enriched with FR light) with B had a strong positive effect on abscisic acid accumulation while the suppression of salicylic acid and jasmonic acid levels were observed at low temperature which resembles the shade avoidance syndrome. We also observed clear lipidomic differences between the individual light and temperature treatments. WFRB light changed the total lipid content negatively, but monogalactosyldiacylglycerol (MGDG) content was increased, nonetheless. Our results prove that WFRB light can greatly influence phytohormone dynamics and lipid contents, which eventually leads to more efficient pre-hardening to avoid frost damage.
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Affiliation(s)
- Mohamed Ahres
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary
| | - Tamás Pálmai
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary
| | - Terézia Kovács
- Biological Research Centre, Institute of Plant Biology, H-6701 Szeged, Hungary
| | - László Kovács
- Biological Research Centre, Institute of Plant Biology, H-6701 Szeged, Hungary
| | - Jozef Lacek
- Institute of Experimental Botany of the Czech Academy of Sciences, 165 02 Prague, Czech Republic
- Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 00 Prague, Czech Republic
| | - Radomira Vankova
- Institute of Experimental Botany of the Czech Academy of Sciences, 165 02 Prague, Czech Republic
| | - Gábor Galiba
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary
- Department of Agronomy, GEORGIKON Campus, Hungarian University of Agricultural and Life Sciences, 8360 Keszthely, Hungary
| | - Péter Borbély
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary
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18
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Lira BS, Oliveira MJ, Shiose L, Vicente MH, Souza GPC, Floh EIS, Purgatto E, Nogueira FTS, Freschi L, Rossi M. SlBBX28 positively regulates plant growth and flower number in an auxin-mediated manner in tomato. PLANT MOLECULAR BIOLOGY 2022; 110:253-268. [PMID: 35798935 DOI: 10.1007/s11103-022-01298-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
SlBBX28 is a positive regulator of auxin metabolism and signaling, affecting plant growth and flower number in tomato B-box domain-containing proteins (BBXs) comprise a family of transcription factors that regulate several processes, such as photomorphogenesis, flowering, and stress responses. For this reason, attention is being directed toward the functional characterization of these proteins, although knowledge in species other than Arabidopsis thaliana remains scarce. Particularly in the tomato, Solanum lycopersicum, only three out of 31 SlBBX proteins have been functionally characterized to date. To deepen the understanding of the role of these proteins in tomato plant development and yield, SlBBX28, a light-responsive gene, was constitutively silenced, resulting in plants with smaller leaves and fewer flowers per inflorescence. Moreover, SlBBX28 knockdown reduced hypocotyl elongation in darkness-grown tomato. Analyses of auxin content and responsiveness revealed that SlBBX28 promotes auxin-mediated responses. Altogether, the data revealed that SlBBX28 promotes auxin production and signaling, ultimately leading to proper hypocotyl elongation, leaf expansion, and inflorescence development, which are crucial traits determining tomato yield.
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Affiliation(s)
- Bruno Silvestre Lira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Maria José Oliveira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Lumi Shiose
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Mateus Henrique Vicente
- Escola Superior de Agricultura 'Luiz de Queiroz', Universidade de São Paulo, São Paulo, SP, Brazil
| | | | - Eny Iochevet Segal Floh
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Eduardo Purgatto
- Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil
| | | | - Luciano Freschi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Magdalena Rossi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil.
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19
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Zhou LJ, Wang Y, Wang Y, Song A, Jiang J, Chen S, Ding B, Guan Z, Chen F. Transcription factor CmbHLH16 regulates petal anthocyanin homeostasis under different lights in Chrysanthemum. PLANT PHYSIOLOGY 2022; 190:1134-1152. [PMID: 35876821 PMCID: PMC9516746 DOI: 10.1093/plphys/kiac342] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/30/2022] [Indexed: 05/14/2023]
Abstract
Light is essential to plant survival and elicits a wide range of plant developmental and physiological responses under different light conditions. A low red-to-far red (R/FR) light ratio induces shade-avoidance responses, including decreased anthocyanin accumulation, whereas a high R/FR light ratio promotes anthocyanin biosynthesis. However, the detailed molecular mechanism underpinning how different R/FR light ratios regulate anthocyanin homeostasis remains elusive, especially in non-model species. Here, we demonstrate that a low R/FR light ratio induced the expression of CmMYB4, which suppressed the anthocyanin activator complex CmMYB6-CmbHLH2, leading to the reduction of anthocyanin accumulation in Chrysanthemum (Chrysanthemum morifolium) petals. Specifically, CmMYB4 recruited the corepressor CmTPL (TOPLESS) to directly bind the CmbHLH2 promoter and suppressed its transcription by impairing histone H3 acetylation. Moreover, the low R/FR light ratio inhibited the PHYTOCHROME INTERACTING FACTOR family transcription factor CmbHLH16, which can competitively bind to CmMYB4 and destabilize the CmMYB4-CmTPL protein complex. Under the high R/FR light ratio, CmbHLH16 was upregulated, which impeded the formation of the CmMYB4-CmTPL complex and released the suppression of CmbHLH2, thus promoting anthocyanin accumulation in Chrysanthemum petals. Our findings reveal a mechanism by which different R/FR light ratios fine-tune anthocyanin homeostasis in flower petals.
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Affiliation(s)
| | | | - Yiguang Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Aiping Song
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiafu Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Sumei Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Baoqing Ding
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Zhiyong Guan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
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20
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Comparative Transcriptomic and Metabolic Analyses Reveal the Coordinated Mechanisms in Pinus koraiensis under Different Light Stress Conditions. Int J Mol Sci 2022; 23:ijms23179556. [PMID: 36076949 PMCID: PMC9455776 DOI: 10.3390/ijms23179556] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/14/2022] [Accepted: 08/21/2022] [Indexed: 01/07/2023] Open
Abstract
Light is one of the most important environmental cues that affects plant development and regulates its behavior. Light stress directly inhibits physiological responses and plant tissue development and even induces mortality in plants. Korean pine (Pinus koraiensis) is an evergreen conifer species widely planted in northeast China that has important economic and ecological value. However, the effects of light stress on the growth and development of Korean pine are still unclear. In this study, the effects of different shading conditions on physiological indices, molecular mechanisms and metabolites of Korean pine were explored. The results showed that auxin, gibberellin and abscisic acid were significantly increased under all shading conditions compared with the control. The contents of chlorophyll a, chlorophyll b, total chlorophyll and carotenoid also increased as the shading degree increased. Moreover, a total of 8556, 3751 and 6990 differentially expressed genes (DEGs) were found between the control and HS (heavy shade), control and LS (light shade), LS vs. HS, respectively. Notably, most DEGs were assigned to pathways of phytohormone signaling, photosynthesis, carotenoid and flavonoid biosynthesis under light stress. The transcription factors MYB-related, AP2-ERF and bHLH specifically increased expression during light stress. A total of 911 metabolites were identified, and 243 differentially accumulated metabolites (DAMs) were detected, among which flavonoid biosynthesis (naringenin chalcone, dihydrokaempferol and kaempferol) metabolites were significantly different under light stress. These results will provide a theoretical basis for the response of P. koraiensis to different light stresses.
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21
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Pan H, Li Y, Chen L, Li J. Molecular Processes of Dodder Haustorium Formation on Host Plant under Low Red/Far Red (R/FR) Irradiation. Int J Mol Sci 2022; 23:ijms23147528. [PMID: 35886875 PMCID: PMC9322645 DOI: 10.3390/ijms23147528] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/28/2022] [Accepted: 07/04/2022] [Indexed: 11/16/2022] Open
Abstract
Low R/FR irradiation can promote dodder haustorium formation on the host plant; however, the mechanisms underlying the process are still unknown. In this study, we compared the transcriptomic data during the formation of haustorium of Cuscuta chinensis on host plant Arabidopsisthaliana under low (R/FR = 0.1) versus high (R/FR = 0.2) R/FR irradiation at 12 h, 24 h and 72 h time points. The results show that low R/FR radiation significantly promoted the entanglement and haustorium formation. Transcriptome analysis showed that during the early stage of haustorium formation, low R/FR radiation significantly up-regulated ARR-A related genes and down-regulated peroxidase related genes compared with high R/FR radiation. Meanwhile, during the middle stage of haustorium formation, low R/FR treatment significantly increased the expression of genes related to pectinesterase (PE), polygalacturonase (PG) and pectin lyase (Pel) production, while, during the late stage of haustorium formation, peroxidase (Prx)-related genes were differentially expressed under different R/FR treatments. Overall, our findings show that a low R/FR ratio promotes the parasitism of C. chinensis through plant hormone signal transduction and cell wall degradation pathways. This study provides a basis for the control of parasitic plants.
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Affiliation(s)
- Hangkai Pan
- School of Life Sciences, Shanghai Normal University, Shanghai 200234, China;
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou 318000, China; (Y.L.); (L.C.)
| | - Yi Li
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou 318000, China; (Y.L.); (L.C.)
| | - Luxi Chen
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou 318000, China; (Y.L.); (L.C.)
| | - Junmin Li
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou 318000, China; (Y.L.); (L.C.)
- Correspondence:
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22
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Tie D, Guo Y, Zhu C, Quan J, Liu S, Zhou Z, Chai Y, Yue M, Liu X. Parental UV-B radiation regulates the habitat selection of clonal Duchesnea indica in heterogeneous light environments. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:600-612. [PMID: 35272763 DOI: 10.1071/fp21253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Habitat selection behaviour is an effective strategy adopted by clonal plants in heterogeneous understorey light environments, and it is likely regulated by the parental environment's ultraviolet-B radiation levels (UV-B) due to the photomorphogenesis of UV-B and maternal effects. Here, parental ramets of Duchesnea indica were treated with two UV-B radiation levels [high (UV5 group) and low (UV10 group)], newborn offspring were grown under a heterogeneous light environment (ambient light vs shade habitat), and the growth and DNA methylation variations of parents and offspring were analysed. The results showed that parental UV-B affected not only the growth of the parent but also the offspring. The offspring of different UV-B-radiated parents showed different performances. Although these offspring all displayed a tendency to escape from light environments, such as entering shade habitats earlier, and allocating more biomass under shade (33.06% of control, 42.28% of UV5 and 72.73% of UV10), these were particularly obvious in offspring of the high UV-B parent. Improvements in epigenetic diversity (4.77 of control vs 4.83 of UV10) and total DNA methylation levels (25.94% of control vs 27.15% of UV10) and the inhibition of shade avoidance syndrome (denser growth with shorter stolons and internodes) were only observed in offspring of high UV-B parents. This difference was related to the eustress and stress effects of low and high UV-B, respectively. Overall, the behaviour of D. indica under heterogeneous light conditions was regulated by the parental UV-B exposure. Moreover, certain performance improvements helped offspring pre-regulate growth to cope with future environments and were probably associated with the effects of maternal DNA methylation variations in UV-B-radiated parents.
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Affiliation(s)
- Dan Tie
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China; and Linyou Branch of Baoji Tobacco Company, Linyou County, Baoji, China
| | - Yuehan Guo
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Chunrui Zhu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Jiaxin Quan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Shiqiang Liu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Zhe Zhou
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Yongfu Chai
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Ming Yue
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
| | - Xiao Liu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi'an, China
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23
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Xie X, Cheng H, Hou C, Ren M. Integration of Light and Auxin Signaling in Shade Plants: From Mechanisms to Opportunities in Urban Agriculture. Int J Mol Sci 2022; 23:3422. [PMID: 35408782 PMCID: PMC8998421 DOI: 10.3390/ijms23073422] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 03/01/2022] [Accepted: 03/09/2022] [Indexed: 11/24/2022] Open
Abstract
With intensification of urbanization throughout the world, food security is being threatened by the population surge, frequent occurrence of extreme climate events, limited area of available cultivated land, insufficient utilization of urban space, and other factors. Determining the means by which high-yielding and high-quality crops can be produced in a limited space is an urgent priority for plant scientists. Dense planting, vertical production, and indoor cultivation are effective ways to make full use of space and improve the crop yield. The results of physiological and molecular analyses of the model plant species Arabidopsis thaliana have shown that the plant response to shade is the key to regulating the plant response to changes in light intensity and quality by integrating light and auxin signals. In this study, we have summarized the major molecular mechanisms of shade avoidance and shade tolerance in plants. In addition, the biotechnological strategies of enhancing plant shade tolerance are discussed. More importantly, cultivating crop varieties with strong shade tolerance could provide effective strategies for dense planting, vertical production, and indoor cultivation in urban agriculture in the future.
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Affiliation(s)
- Xiulan Xie
- Laboratory of Space Biology, Institute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu 610213, China; (X.X.); (H.C.)
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Science of Zhengzhou University, Zhengzhou 450000, China;
- Hainan Yazhou Bay Seed Laboratory, Sanya 572025, China
| | - Hao Cheng
- Laboratory of Space Biology, Institute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu 610213, China; (X.X.); (H.C.)
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Science of Zhengzhou University, Zhengzhou 450000, China;
- Hainan Yazhou Bay Seed Laboratory, Sanya 572025, China
| | - Chenyang Hou
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Science of Zhengzhou University, Zhengzhou 450000, China;
| | - Maozhi Ren
- Laboratory of Space Biology, Institute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu 610213, China; (X.X.); (H.C.)
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Science of Zhengzhou University, Zhengzhou 450000, China;
- Hainan Yazhou Bay Seed Laboratory, Sanya 572025, China
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24
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Ponnu J, Hoecker U. Signaling Mechanisms by Arabidopsis Cryptochromes. FRONTIERS IN PLANT SCIENCE 2022; 13:844714. [PMID: 35295637 PMCID: PMC8918993 DOI: 10.3389/fpls.2022.844714] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 02/04/2022] [Indexed: 05/29/2023]
Abstract
Cryptochromes (CRYs) are blue light photoreceptors that regulate growth, development, and metabolism in plants. In Arabidopsis thaliana (Arabidopsis), CRY1 and CRY2 possess partially redundant and overlapping functions. Upon exposure to blue light, the monomeric inactive CRYs undergo phosphorylation and oligomerization, which are crucial to CRY function. Both the N- and C-terminal domains of CRYs participate in light-induced interaction with multiple signaling proteins. These include the COP1/SPA E3 ubiquitin ligase, several transcription factors, hormone signaling intermediates and proteins involved in chromatin-remodeling and RNA N6 adenosine methylation. In this review, we discuss the mechanisms of Arabidopsis CRY signaling in photomorphogenesis and the recent breakthroughs in Arabidopsis CRY research.
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Affiliation(s)
| | - Ute Hoecker
- *Correspondence: Ute Hoecker, , orcid.org/0000-0002-5636-9777
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25
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Basnet P, Um T, Roy NS, Cho WS, Park SC, Park KC, Choi IY. Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean. Front Genet 2022; 13:805347. [PMID: 35281824 PMCID: PMC8907156 DOI: 10.3389/fgene.2022.805347] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 01/17/2022] [Indexed: 11/13/2022] Open
Abstract
In cultivated plants, shoot morphology is an important factor that influences crop economic value. However, the effects of gene expression patterns on shoot morphology are not clearly understood. In this study, the molecular mechanism behind shoot morphology (including leaf, stem, and node) was analyzed using RNA sequencing to compare weedy (creeper) and cultivar (stand) growth types obtained in F7 derived from a cross of wild and cultivated soybeans. A total of 12,513 (in leaves), 14,255 (in stems), and 11,850 (in nodes) differentially expressed genes were identified among weedy and cultivar soybeans. Comparative transcriptome and expression analyses revealed 22 phytohormone-responsive genes. We found that GIBBERELLIN 2-OXIDASE 8 (GA2ox), SPINDLY (SPY), FERONIA (FER), AUXIN RESPONSE FACTOR 8 (ARF8), CYTOKININ DEHYDROGENASE-1 (CKX1), and ARABIDOPSIS HISTIDINE KINASE-3 (AHK3), which are crucial phytohormone response genes, were mainly regulated in the shoot of weedy and cultivar types. These results indicate that interactions between phytohormone signaling genes regulate shoot morphology in weedy and cultivar growth type plants. Our study provides insights that are useful for breeding and improving crops to generate high-yield soybean varieties.
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Affiliation(s)
- Prakash Basnet
- Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, South Korea
| | - Taeyoung Um
- Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, South Korea
| | - Neha Samir Roy
- Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, South Korea
| | - Woo Suk Cho
- Department of Agricultural Biotechnology/National Academy of Agricultural Science, Rural Development Administration, Jeonju, South Korea
| | - Soo Chul Park
- Department of Agricultural Biotechnology/National Academy of Agricultural Science, Rural Development Administration, Jeonju, South Korea
| | - Kyong-Cheul Park
- Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, South Korea
| | - Ik-Young Choi
- Department of Agriculture and Life Industry, Kangwon National University, Chuncheon, South Korea
- *Correspondence: Ik-Young Choi,
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26
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Colombo M, Montazeaud G, Viader V, Ecarnot M, Prosperi J, David J, Fort F, Violle C, Freville H. A genome‐wide analysis suggests pleiotropic effects of Green Revolution genes on shade avoidance in wheat. Evol Appl 2022; 15:1594-1604. [PMID: 36330302 PMCID: PMC9624089 DOI: 10.1111/eva.13349] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 01/19/2022] [Accepted: 01/20/2022] [Indexed: 11/26/2022] Open
Abstract
A classic example of phenotypic plasticity in plants is the suit of phenotypic responses induced by a change in the ratio of red to far-red light (R∶FR) as a result of shading, also known as the shade avoidance syndrome (SAS). While the adaptive consequences of this syndrome have been extensively discussed in natural ecosystems, how SAS varies within crop populations and how SAS evolved during crop domestication and breeding remain poorly known. In this study, we grew a panel of 180 durum wheat (Triticum turgidum ssp. durum) genotypes spanning diversity from wild, early domesticated, and elite genetic compartments under two light treatments: low R:FR light (shaded treatment) and high R:FR light (unshaded treatment). We first quantified the genetic variability of SAS, here measured as a change in plant height at the seedling stage. We then dissected the genetic basis of this variation through genome-wide association mapping. Genotypes grown in shaded conditions were taller than those grown under unshaded conditions. Interaction between light quality and genotype did not affect plant height. We found six QTLs affecting plant height. Three significantly interacted with light quality among which the well-known Rht1 gene introgressed in elite germplasm during the Green Revolution. Interestingly at three loci, short genotypes systematically expressed reduced SAS, suggesting a positive genetic correlation between plant height and plant height plasticity. Overall, our study sheds light on the evolutionary history of crops and illustrates the relevance of genetic approaches to tackle agricultural challenges.
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Affiliation(s)
- Michel Colombo
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
- CEFE Univ. Montpellier Institut Agro CNRS EPHE, IRD Univ Valéry Montpellier France
| | - Germain Montazeaud
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
- CEFE Univ. Montpellier Institut Agro CNRS EPHE, IRD Univ Valéry Montpellier France
- Department of Ecology and Evolution University of Lausanne 1015 Lausanne Switzerland
| | - Veronique Viader
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
| | - Martin Ecarnot
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
| | | | - Jacques David
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
| | - Florian Fort
- CEFE Univ. Montpellier Institut Agro CNRS EPHE, IRD Univ Valéry Montpellier France
| | - Cyrille Violle
- CEFE Univ. Montpellier CNRS EPHE, IRD Univ Valéry Montpellier France
| | - Helene Freville
- AGAP Univ Montpellier CIRAD, INRAE Institut Agro Montpellier France
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27
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Serrano-Pérez E, Romero-Losada AB, Morales-Pineda M, García-Gómez ME, Couso I, García-González M, Romero-Campero FJ. Transcriptomic and Metabolomic Response to High Light in the Charophyte Alga Klebsormidium nitens. FRONTIERS IN PLANT SCIENCE 2022; 13:855243. [PMID: 35599877 PMCID: PMC9121098 DOI: 10.3389/fpls.2022.855243] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 03/28/2022] [Indexed: 05/04/2023]
Abstract
The characterization of the molecular mechanisms, such as high light irradiance resistance, that allowed plant terrestralization is a cornerstone in evolutionary studies since the conquest of land by plants played a pivotal role in life evolution on Earth. Viridiplantae or the green lineage is divided into two clades, Chlorophyta and Streptophyta, that in turn splits into Embryophyta or land plants and Charophyta. Charophyta are used in evolutionary studies on plant terrestralization since they are generally accepted as the extant algal species most closely related to current land plants. In this study, we have chosen the facultative terrestrial early charophyte alga Klebsormidium nitens to perform an integrative transcriptomic and metabolomic analysis under high light in order to unveil key mechanisms involved in the early steps of plants terrestralization. We found a fast chloroplast retrograde signaling possibly mediated by reactive oxygen species and the inositol polyphosphate 1-phosphatase (SAL1) and 3'-phosphoadenosine-5'-phosphate (PAP) pathways inducing gene expression and accumulation of specific metabolites. Systems used by both Chlorophyta and Embryophyta were activated such as the xanthophyll cycle with an accumulation of zeaxanthin and protein folding and repair mechanisms constituted by NADPH-dependent thioredoxin reductases, thioredoxin-disulfide reductases, and peroxiredoxins. Similarly, cyclic electron flow, specifically the pathway dependent on proton gradient regulation 5, was strongly activated under high light. We detected a simultaneous co-activation of the non-photochemical quenching mechanisms based on LHC-like stress related (LHCSR) protein and the photosystem II subunit S that are specific to Chlorophyta and Embryophyta, respectively. Exclusive Embryophyta systems for the synthesis, sensing, and response to the phytohormone auxin were also activated under high light in K. nitens leading to an increase in auxin content with the concomitant accumulation of amino acids such as tryptophan, histidine, and phenylalanine.
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Affiliation(s)
- Emma Serrano-Pérez
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
- Department of Computer Science and Artificial Intelligence, Universidad de Sevilla, Seville, Spain
| | - Ana B. Romero-Losada
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
- Department of Computer Science and Artificial Intelligence, Universidad de Sevilla, Seville, Spain
| | - María Morales-Pineda
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - M. Elena García-Gómez
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Inmaculada Couso
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Mercedes García-González
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Francisco J. Romero-Campero
- Microalgae Systems Biology and Biotechnology Research Group, Institute for Plant Biochemistry and Photosynthesis, Universidad de Sevilla – Consejo Superior de Investigaciones Científicas, Seville, Spain
- Department of Computer Science and Artificial Intelligence, Universidad de Sevilla, Seville, Spain
- *Correspondence: Francisco J. Romero-Campero,
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28
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Nguyen NH, Sng BJR, Yeo HC, Jang IC. Comparative phenotypic and transcriptomic analyses unravel conserved and distinct mechanisms underlying shade avoidance syndrome in Brassicaceae vegetables. BMC Genomics 2021; 22:760. [PMID: 34696740 PMCID: PMC8546956 DOI: 10.1186/s12864-021-08076-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 10/11/2021] [Indexed: 11/10/2022] Open
Abstract
Background Plants grown under shade are exposed to low red/far-red ratio, thereby triggering an array of altered phenotypes called shade avoidance syndrome (SAS). Shade negatively influences plant growth, leading to a reduction in agricultural productivity. Understanding of SAS is crucial for sustainable agricultural practices, especially for high-density indoor farming. Brassicaceae vegetables are widely consumed around the world and are commonly cultivated in indoor farms. However, our understanding of SAS in Brassicaceae vegetables and their genome-wide transcriptional regulatory networks are still largely unexplored. Results Shade induced common signs of SAS, including hypocotyl elongation and reduced carotenoids/anthocyanins biosynthesis, in two different Brassicaceae species: Brassica rapa (Choy Sum and Pak Choy) and Brassica oleracea (Kai Lan). Phenotype-assisted transcriptome analysis identified a set of genes induced by shade in these species, many of which were related to auxin biosynthesis and signaling [e.g. YUCCA8 (YUC8), YUC9, and INDOLE-3-ACETIC ACID INDUCIBLE (IAAs)] and other phytohormones signaling pathways including brassinosteroids and ethylene. The genes functioning in plant defense (e.g. MYB29 and JASMONATE-ZIM-DOMAIN PROTEIN 9) as well as in biosynthesis of anthocyanins and glucosinolates were repressed upon shade. Besides, each species also exhibited distinct SAS phenotypes. Shade strongly reduced primary roots and elongated petioles of B. oleracea, Kai Lan. However, these SAS phenotypes were not clearly recognized in B. rapa, Choy Sum and Pak Choy. Some auxin signaling genes (e.g. AUXIN RESPONSE FACTOR 19, IAA10, and IAA20) were specifically induced in B. oleracea, while homologs in B. rapa were not up-regulated under shade. Contrastingly, shade-exposed B. rapa vegetables triggered the ethylene signaling pathway earlier than B. oleracea, Kai Lan. Interestingly, shade induced the transcript levels of LONG HYPOCOTYL IN FAR-RED 1 (HFR1) homolog in only Pak Choy as B. rapa. As HFR1 is a key negative regulator of SAS in Arabidopsis, our finding suggests that Pak Choy HFR1 homolog may also function in conferring higher shade tolerance in this variety. Conclusions Our study shows that two Brassicaceae species not only share a conserved SAS mechanism but also exhibit distinct responses to shade, which will provide comprehensive information to develop new shade-tolerant cultivars that are suitable for high-density indoor farms. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-08076-1.
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Affiliation(s)
- Nguyen Hoai Nguyen
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore
| | - Benny Jian Rong Sng
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore.,Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore
| | - Hock Chuan Yeo
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore
| | - In-Cheol Jang
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore. .,Department of Biological Sciences, National University of Singapore, Singapore, 117543, Singapore.
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Pepe M, Hesami M, Small F, Jones AMP. Comparative Analysis of Machine Learning and Evolutionary Optimization Algorithms for Precision Micropropagation of Cannabis sativa: Prediction and Validation of in vitro Shoot Growth and Development Based on the Optimization of Light and Carbohydrate Sources. FRONTIERS IN PLANT SCIENCE 2021; 12:757869. [PMID: 34745189 PMCID: PMC8566924 DOI: 10.3389/fpls.2021.757869] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Accepted: 09/30/2021] [Indexed: 05/03/2023]
Abstract
Micropropagation techniques offer opportunity to proliferate, maintain, and study dynamic plant responses in highly controlled environments without confounding external influences, forming the basis for many biotechnological applications. With medicinal and recreational interests for Cannabis sativa L. growing, research related to the optimization of in vitro practices is needed to improve current methods while boosting our understanding of the underlying physiological processes. Unfortunately, due to the exorbitantly large array of factors influencing tissue culture, existing approaches to optimize in vitro methods are tedious and time-consuming. Therefore, there is great potential to use new computational methodologies for analyzing data to develop improved protocols more efficiently. Here, we first tested the effects of light qualities using assorted combinations of Red, Blue, Far Red, and White spanning 0-100 μmol/m2/s in combination with sucrose concentrations ranging from 1 to 6% (w/v), totaling 66 treatments, on in vitro shoot growth, root development, number of nodes, shoot emergence, and canopy surface area. Collected data were then assessed using multilayer perceptron (MLP), generalized regression neural network (GRNN), and adaptive neuro-fuzzy inference system (ANFIS) to model and predict in vitro Cannabis growth and development. Based on the results, GRNN had better performance than MLP or ANFIS and was consequently selected to link different optimization algorithms [genetic algorithm (GA), biogeography-based optimization (BBO), interior search algorithm (ISA), and symbiotic organisms search (SOS)] for prediction of optimal light levels (quality/intensity) and sucrose concentration for various applications. Predictions of in vitro conditions to refine growth responses were subsequently tested in a validation experiment and data showed no significant differences between predicted optimized values and observed data. Thus, this study demonstrates the potential of machine learning and optimization algorithms to predict the most favorable light combinations and sucrose levels to elicit specific developmental responses. Based on these, recommendations of light and carbohydrate levels to promote specific developmental outcomes for in vitro Cannabis are suggested. Ultimately, this work showcases the importance of light quality and carbohydrate supply in directing plant development as well as the power of machine learning approaches to investigate complex interactions in plant tissue culture.
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Affiliation(s)
- Marco Pepe
- Department of Plant Agriculture, Gosling Research Institute for Plant Preservation, University of Guelph, Guelph, ON, Canada
| | - Mohsen Hesami
- Department of Plant Agriculture, Gosling Research Institute for Plant Preservation, University of Guelph, Guelph, ON, Canada
| | - Finlay Small
- Department of Research and Development, Entourage Health Corp., Guelph, ON, Canada
| | - Andrew Maxwell Phineas Jones
- Department of Plant Agriculture, Gosling Research Institute for Plant Preservation, University of Guelph, Guelph, ON, Canada
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Abe-Hara C, Yamada K, Wada N, Ueta R, Hashimoto R, Osakabe K, Osakabe Y. Effects of the sliaa9 Mutation on Shoot Elongation Growth of Tomato Cultivars. FRONTIERS IN PLANT SCIENCE 2021; 12:627832. [PMID: 34093603 PMCID: PMC8173035 DOI: 10.3389/fpls.2021.627832] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 04/27/2021] [Indexed: 06/12/2023]
Abstract
Tomato INDOLE-3-ACETIC ACID9 (SlIAA9) is a transcriptional repressor in auxin signal transduction, and SlIAA9 knockout tomato plants develop parthenocarpic fruits without fertilization. We generated sliaa9 mutants with parthenocarpy in several commercial tomato cultivars (Moneymaker, Rio Grande, and Ailsa Craig) using CRISPR-Cas9, and null-segregant lines in the T1 generation were isolated by self-pollination, which was confirmed by PCR and Southern blot analysis. We then estimated shoot growth phenotypes of the mutant plants under different light (low and normal) conditions. The shoot length of sliaa9 plants in Moneymaker and Rio Grande was smaller than those of wild-type cultivars in low light conditions, whereas there was not clear difference between the mutant of Ailsa Craig and the wild-type under both light conditions. Furthermore, young seedlings in Rio Grande exhibited shade avoidance response in hypocotyl growth, in which the hypocotyl lengths were increased in low light conditions, and sliaa9 mutant seedlings of Ailsa Craig exhibited enhanced responses in this phenotype. Fruit production and growth rates were similar among the sliaa9 mutant tomato cultivars. These results suggest that control mechanisms involved in the interaction of AUX/IAA9 and lights condition in elongation growth differ among commercial tomato cultivars.
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Affiliation(s)
- Chihiro Abe-Hara
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Kohji Yamada
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Naoki Wada
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Risa Ueta
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Ryosuke Hashimoto
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Keishi Osakabe
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
| | - Yuriko Osakabe
- Faculty of Bioscience and Bioindustry, Tokushima University, Tokushima, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan
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Landi M, Agati G, Fini A, Guidi L, Sebastiani F, Tattini M. Unveiling the shade nature of cyanic leaves: A view from the "blue absorbing side" of anthocyanins. PLANT, CELL & ENVIRONMENT 2021; 44:1119-1129. [PMID: 32515010 DOI: 10.1111/pce.13818] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 06/01/2020] [Indexed: 05/02/2023]
Abstract
Anthocyanins have long been suggested as having great potential in offering photoprotection to plants facing high light irradiance. Nonetheless, their effective ability in protecting the photosynthetic apparatus from supernumerary photons has been questioned by some authors, based upon the inexact belief that anthocyanins almost exclusively absorb green photons, which are poorly absorbed by chlorophylls. Here we focus on the blue light absorbing features of anthocyanins, a neglected issue in anthocyanin research. Anthocyanins effectively absorb blue photons: the absorbance of blue relative to green photons increases from tri- to mono-hydroxy B-ring substituted structures, reaching up to 50% of green photons absorption. We offer a comprehensive picture of the molecular events activated by low blue-light availability, extending our previous analysis in purple and green basil, which we suggest to be responsible for the "shade syndrome" displayed by cyanic leaves. While purple leaves display overexpression of genes promoting chlorophyll biosynthesis and light harvesting, in green leaves it is the genes involved in the stability/repair of photosystems that are largely overexpressed. As a corollary, this adds further support to the view of an effective photoprotective role of anthocyanins. We discuss the profound morpho-anatomical adjustments imposed by the epidermal anthocyanin shield, which reflect adjustments in light harvesting capacity under imposed shade and make complex the analysis of the photosynthetic performance of cyanic versus acyanic leaves.
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Affiliation(s)
- Marco Landi
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | - Giovanni Agati
- Institute of Applied Physics 'Nello Carrara', Florence, Italy
| | - Alessio Fini
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy University of Milan, Milan, Italy
| | - Lucia Guidi
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | - Federico Sebastiani
- Institute for Sustainable Plant Protection, National Research Council of Italy, Florence, Italy
| | - Massimiliano Tattini
- Institute for Sustainable Plant Protection, National Research Council of Italy, Florence, Italy
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Ahres M, Pálmai T, Gierczik K, Dobrev P, Vanková R, Galiba G. The Impact of Far-Red Light Supplementation on Hormonal Responses to Cold Acclimation in Barley. Biomolecules 2021; 11:biom11030450. [PMID: 33802867 PMCID: PMC8002655 DOI: 10.3390/biom11030450] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 03/08/2021] [Accepted: 03/16/2021] [Indexed: 12/21/2022] Open
Abstract
Cold acclimation, the necessary prerequisite for promotion of freezing tolerance, is affected by both low temperature and enhanced far-red/red light (FR/R) ratio. The impact of FR supplementation to white light, created by artificial LED light sources, on the hormone levels, metabolism, and expression of the key hormone metabolism-related genes was determined in winter barley at moderate (15 °C) and low (5 °C) temperature. FR-enhanced freezing tolerance at 15 °C was associated with promotion of abscisic acid (ABA) levels, and accompanied by a moderate increase in indole-3-acetic acid (IAA) and cis-zeatin levels. The most prominent impact on the plants’ freezing tolerance was found after FR pre-treatment at 15 °C (for 10 days) followed by cold treatment at FR supplementation (7 days). The response of ABA was diminished in comparison with white light treatment, probably due to the elevation of stress tolerance during FR pre-treatment. Jasmonic acid (JA) and salicylic acid (SA) were transiently reduced. When the plants were exposed directly to a combination of cold (5 °C) and FR supplementation, ABA increase was higher than in white light, and was associated with enhanced elevation of JA and, in the longer term (after 7 days), with IAA and cis-zeatin increase, which indicates a stronger stress response and better acclimation. Cold hardening was more efficient when FR light was applied in the early developmental stage of the barley plants (three-leaf stage, 18 days), rather than in later stages (28-days). The dynamics of the phytohormone changes are well supported by the expression profiles of the key hormone metabolism-related genes. This series of treatments serves as evidence for the close relationship between plant hormones, light quality, and low temperature at the beginning of cold acclimation. Besides the timing of the FR treatments, plant age also represents a key factor during light spectrum-dependent cold acclimation.
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Affiliation(s)
- Mohamed Ahres
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary; (M.A.); (T.P.); (K.G.); (G.G.)
- Department of Environmental Sustainability, Festetics Doctoral School, IES, Hungarian University of Agriculture and Life Sciences, H-8360 Keszthely, Hungary
| | - Tamás Pálmai
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary; (M.A.); (T.P.); (K.G.); (G.G.)
| | - Krisztián Gierczik
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary; (M.A.); (T.P.); (K.G.); (G.G.)
| | - Petre Dobrev
- Institute of Experimental Botany of the Czech Academy of Sciences, 165 02 Prague, Czech Republic;
| | - Radomíra Vanková
- Institute of Experimental Botany of the Czech Academy of Sciences, 165 02 Prague, Czech Republic;
- Correspondence:
| | - Gábor Galiba
- Centre for Agricultural Research, Agricultural Institute, Eötvös Loránd Research Network, H-2462 Martonvásár, Hungary; (M.A.); (T.P.); (K.G.); (G.G.)
- Department of Environmental Sustainability, Festetics Doctoral School, IES, Hungarian University of Agriculture and Life Sciences, H-8360 Keszthely, Hungary
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Deng G, Bi F, Liu J, He W, Li C, Dong T, Yang Q, Gao H, Dou T, Zhong X, Peng M, Yi G, Hu C, Sheng O. Transcriptome and metabolome profiling provide insights into molecular mechanism of pseudostem elongation in banana. BMC PLANT BIOLOGY 2021; 21:125. [PMID: 33648452 PMCID: PMC7923470 DOI: 10.1186/s12870-021-02899-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 02/21/2021] [Indexed: 06/01/2023]
Abstract
BACKGROUND Banana plant height is an important trait for horticultural practices and semi-dwarf cultivars show better resistance to damages by wind and rain. However, the molecular mechanisms controlling the pseudostem height remain poorly understood. Herein, we studied the molecular changes in the pseudostem of a semi-dwarf banana mutant Aifen No. 1 (Musa spp. Pisang Awak sub-group ABB) as compared to its wild-type dwarf cultivar using a combined transcriptome and metabolome approach. RESULTS A total of 127 differentially expressed genes and 48 differentially accumulated metabolites were detected between the mutant and its wild type. Metabolites belonging to amino acid and its derivatives, flavonoids, lignans, coumarins, organic acids, and phenolic acids were up-regulated in the mutant. The transcriptome analysis showed the differential regulation of genes related to the gibberellin pathway, auxin transport, cell elongation, and cell wall modification. Based on the regulation of gibberellin and associated pathway-related genes, we discussed the involvement of gibberellins in pseudostem elongation in the mutant banana. Genes and metabolites associated with cell wall were explored and their involvement in cell extension is discussed. CONCLUSIONS The results suggest that gibberellins and associated pathways are possibly developing the observed semi-dwarf pseudostem phenotype together with cell elongation and cell wall modification. The findings increase the understanding of the mechanisms underlying banana stem height and provide new clues for further dissection of specific gene functions.
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Affiliation(s)
- Guiming Deng
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Fangcheng Bi
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Jing Liu
- Horticulture and Landscape College, Hunan Agricultural University, Changsha, 410128 China
| | - Weidi He
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Chunyu Li
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Tao Dong
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Qiaosong Yang
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Huijun Gao
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Tongxin Dou
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Xiaohong Zhong
- Horticulture and Landscape College, Hunan Agricultural University, Changsha, 410128 China
| | - Miao Peng
- Horticulture and Landscape College, Hunan Agricultural University, Changsha, 410128 China
| | - Ganjun Yi
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Chunhua Hu
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
| | - Ou Sheng
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China
- Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangdong Province, Guangzhou, China
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Zhao H, Xu D, Tian T, Kong F, Lin K, Gan S, Zhang H, Li G. Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 303:110786. [PMID: 33487361 DOI: 10.1016/j.plantsci.2020.110786] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 10/31/2020] [Accepted: 11/28/2020] [Indexed: 05/18/2023]
Abstract
The circadian clock is an endogenous timekeeper system that generates biological rhythms of approximately 24 h in most organisms. EARLY FLOWERING 3 (ELF3) and ELF4 were initially identified as negative regulators of flowering time in Arabidopsis thaliana. They were then found to play crucial roles in the circadian clock by integrating environmental light and ambient temperature signals and transmitting them to the central oscillator, thereby regulating various downstream cellular and physiological processes. At dusk, ELF3 acts as a scaffold, interacting with ELF4 and the transcription factor LUX ARRHYTHMO (PHYTOCLOCK1) to form an EVENING COMPLEX (EC). This complex represses the transcription of multiple circadian clock-related genes, thus inhibiting hypocotyl elongation and flowering. Subsequent studies have expanded knowledge about the regulatory roles of the EC in thermomorphogenesis and shade responses. In addition, ELF3 and ELF4 also form multiple complexes with other proteins including chromatin remodeling factors, histone deacetylase, and transcription factors, thus enabling the transcriptional repression of diverse targets. In this review, we summarize the recent advances in elucidating the regulatory mechanisms of ELF3 and ELF4 in plants and discuss directions for future research on ELF3 and ELF4.
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Affiliation(s)
- Hang Zhao
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China; College of Life Sciences, Qufu Normal University, Qufu, 273165, China
| | - Di Xu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China
| | - Tian Tian
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China
| | - Fanying Kong
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China
| | - Ke Lin
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China; Department of Biology Science and Technology, Taishan University, Tai'an, 271000, China
| | - Shuo Gan
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China
| | - Haisen Zhang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China
| | - Gang Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, 271000, China.
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Pierik R, Ballaré CL. Control of Plant Growth and Defense by Photoreceptors: From Mechanisms to Opportunities in Agriculture. MOLECULAR PLANT 2021; 14:61-76. [PMID: 33276158 DOI: 10.1016/j.molp.2020.11.021] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 11/19/2020] [Accepted: 11/26/2020] [Indexed: 06/12/2023]
Abstract
Plants detect and respond to the proximity of competitors using light signals perceived by photoreceptor proteins. A low ratio of red to far-red radiation (R:FR ratio) is a key signal of competition that is sensed by the photoreceptor phytochrome B (phyB). Low R:FR ratios increase the synthesis of growth-related hormones, including auxin and gibberellins, promoting stem elongation and other shade-avoidance responses. Other photoreceptors that help plants to optimize their developmental configuration and resource allocation patterns in the canopy include blue light photoreceptors, such as cryptochromes and phototropins, and UV receptors, such as UVR8. All photoreceptors act by directly or indirectly controlling the activity of two major regulatory nodes for growth and development: the COP1/SPA ubiquitin E3 ligase complex and the PIF transcription factors. phyB is also an important modulator of hormonal pathways that regulate plant defense against herbivores and pathogens, including the jasmonic acid signaling pathway. In this Perspective, we discuss recent advances on the studies of the mechanisms that link photoreceptors with growth and defense. Understanding these mechanisms is important to provide a functional platform for breeding programs aimed at improving plant productivity, stress tolerance, and crop health in species of agronomic interest, and to manipulate the light environments in protected agriculture.
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Affiliation(s)
- Ronald Pierik
- Plant Ecophysiology, Department of Biology, Utrecht University, Padualaan 8, Utrecht 3584 CH, the Netherlands.
| | - Carlos L Ballaré
- IFEVA, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad de Buenos Aires, Ave. San Martín 4453, C1417DSE, Buenos Aires, Argentina; IIBIO-INTECH, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de San Martín, B1650HMP, Buenos Aires, Argentina.
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Zhang X, Liu L, Wang H, Gu Z, Liu Y, Wang M, Wang M, Xu Y, Shi Q, Li G, Tong J, Xiao L, Wang ZY, Mysore KS, Wen J, Zhou C. MtPIN1 and MtPIN3 Play Dual Roles in Regulation of Shade Avoidance Response under Different Environments in Medicago truncatula. Int J Mol Sci 2020; 21:ijms21228742. [PMID: 33228084 PMCID: PMC7699406 DOI: 10.3390/ijms21228742] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/12/2020] [Accepted: 11/16/2020] [Indexed: 01/17/2023] Open
Abstract
Polar auxin transport mediated by PIN-FORMED (PIN) proteins is critical for plant growth and development. As an environmental cue, shade stimulates hypocotyls, petiole, and stem elongation by inducing auxin synthesis and asymmetric distributions, which is modulated by PIN3,4,7 in Arabidopsis. Here, we characterize the MtPIN1 and MtPIN3, which are the orthologs of PIN3,4,7, in model legume species Medicago truncatula. Under the low Red:Far-Red (R:FR) ratio light, the expression of MtPIN1 and MtPIN3 is induced, and shadeavoidance response is disrupted in mtpin1 mtpin3 double mutant, indicating that MtPIN1 and MtPIN3 have a conserved function in shade response. Surprisingly, under the normal growth condition, mtpin1 mtpin3 displayed the constitutive shade avoidance responses, such as the elongated petiole, smaller leaf, and increased auxin and chlorophyll content. Therefore, MtPIN1 and MtPIN3 play dual roles in regulation of shadeavoidance response under different environments. Furthermore, these data suggest that PIN3,4,7 and its orthologs have evolved conserved and specific functions among species.
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Affiliation(s)
- Xue Zhang
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Lu Liu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Hongfeng Wang
- School of Life Science, Guangzhou University, Guangzhou 510006, China;
| | - Zhiqun Gu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Yafei Liu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Minmin Wang
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Min Wang
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Yiteng Xu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
| | - Qingbiao Shi
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an 271018, China; (Q.S.); (G.L.)
| | - Gang Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai’an 271018, China; (Q.S.); (G.L.)
| | - Jianhua Tong
- Hunan Provincial Key Laboratory of Phytohormones, Hunan Agricultural University, Changsha 410128, China; (J.T.); (L.X.)
| | - Langtao Xiao
- Hunan Provincial Key Laboratory of Phytohormones, Hunan Agricultural University, Changsha 410128, China; (J.T.); (L.X.)
| | - Zeng-Yu Wang
- Grassland Agri-Husbandry Research Center, Qingdao Agricultural University, Qingdao 266109, China;
| | | | - Jiangqi Wen
- Noble Research Institute, LLC, Ardmore, OK 73401, USA; (K.S.M.); (J.W.)
| | - Chuanen Zhou
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao 266237, China; (X.Z.); (L.L.); (Z.G.); (Y.L.); (M.W.); (M.W.); (Y.X.)
- Correspondence:
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Sng BJR, Singh GP, Van Vu K, Chua NH, Ram RJ, Jang IC. Rapid metabolite response in leaf blade and petiole as a marker for shade avoidance syndrome. PLANT METHODS 2020; 16:144. [PMID: 33117429 PMCID: PMC7590806 DOI: 10.1186/s13007-020-00688-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Accepted: 10/17/2020] [Indexed: 05/10/2023]
Abstract
BACKGROUND Shade avoidance syndrome (SAS) commonly occurs in plants experiencing vegetative shade, causing morphological and physiological changes that are detrimental to plant health and consequently crop yield. As the effects of SAS on plants are irreversible, early detection of SAS in plants is critical for sustainable agriculture. However, conventional methods to assess SAS are restricted to observing for morphological changes and checking the expression of shade-induced genes after homogenization of plant tissues, which makes it difficult to detect SAS early. RESULTS Using the model plant Arabidopsis thaliana, we introduced the use of Raman spectroscopy to measure shade-induced changes of metabolites in vivo. Raman spectroscopy detected a decrease in carotenoid contents in leaf blades and petioles of plants with SAS, which were induced by low Red:Far-red light ratio or high density conditions. Moreover, by measuring the carotenoid Raman peaks, we were able to show that the reduction in carotenoid content under shade was mediated by phytochrome signaling. Carotenoid Raman peaks showed more remarkable response to SAS in petioles than leaf blades of plants, which greatly corresponded to their morphological response under shade or high plant density. Most importantly, carotenoid content decreased shortly after shade induction but before the occurrence of visible morphological changes. We demonstrated this finding to be similar in other plant species. Comprehensive testing of Brassica vegetables showed that carotenoid content decreased during SAS, in both shade and high density conditions. Likewise, carotenoid content responded quickly to shade, in a manner similar to Arabidopsis plants. CONCLUSIONS In various plant species tested in this study, quantification of carotenoid Raman peaks correlate to the severity of SAS. Moreover, short-term exposure to shade can induce the carotenoid Raman peaks to decrease. These findings highlight the carotenoid Raman peaks as a biomarker for early diagnosis of SAS in plants.
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Affiliation(s)
- Benny Jian Rong Sng
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604 Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, 117543 Singapore
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
| | - Gajendra Pratap Singh
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
| | - Kien Van Vu
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604 Singapore
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
| | - Nam-Hai Chua
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604 Singapore
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
| | - Rajeev J. Ram
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - In-Cheol Jang
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604 Singapore
- Department of Biological Sciences, National University of Singapore, Singapore, 117543 Singapore
- Disruptive & Sustainable Technologies for Agricultural Precision, 1 CREATE way, Singapore-MIT Alliance for Research and Technology, Singapore, 138602 Singapore
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Deepika, Ankit, Sagar S, Singh A. Dark-Induced Hormonal Regulation of Plant Growth and Development. FRONTIERS IN PLANT SCIENCE 2020; 11:581666. [PMID: 33117413 PMCID: PMC7575791 DOI: 10.3389/fpls.2020.581666] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 09/16/2020] [Indexed: 05/04/2023]
Abstract
The sessile nature of plants has made them extremely sensitive and flexible toward the constant flux of the surrounding environment, particularly light and dark. The light is perceived as a signal by specific receptors which further transduce the information through the signaling intermediates and effector proteins to modulate gene expression. Signal transduction induces changes in hormone levels that alters developmental, physiological and morphological processes. Importance of light for plants growth is well recognized, but a holistic understanding of key molecular and physiological changes governing plants development under dark is awaited. Here, we describe how darkness acts as a signal causing alteration in hormone levels and subsequent modulation of the gene regulatory network throughout plant life. The emphasis of this review is on dark mediated changes in plant hormones, regulation of signaling complex COP/DET/FUS and the transcription factors PIFs which affects developmental events such as apical hook development, elongated hypocotyls, photoperiodic flowering, shortened roots, and plastid development. Furthermore, the role of darkness in shade avoidance and senescence is discussed.
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Affiliation(s)
| | | | | | - Amarjeet Singh
- National Institute of Plant Genome Research, New Delhi, India
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Jia Y, Kong X, Hu K, Cao M, Liu J, Ma C, Guo S, Yuan X, Zhao S, Robert HS, Li C, Tian H, Ding Z. PIFs coordinate shade avoidance by inhibiting auxin repressor ARF18 and metabolic regulator QQS. THE NEW PHYTOLOGIST 2020; 228:609-621. [PMID: 32521046 DOI: 10.1111/nph.16732] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 05/20/2020] [Indexed: 05/29/2023]
Abstract
Shade avoidance syndrome (SAS) arises in densely growing plants that compete for light. In Arabidopsis thaliana, phytochrome interacting factor (PIF) proteins link the perception of shade to stem elongation via auxin production. Here, we report that PIFs inhibit the shade-induced expression of AUXIN RESPONSE FACTOR 18 (ARF18), and ARF18 represses auxin signaling. Therefore, PIF-mediated inhibition of ARF18 enhances auxin-dependent hypocotyl elongation in simulated shade. Furthermore, we show that both PIFs and ARF18 directly repress qua-quine starch (QQS), which controls the allocation of carbon and nitrogen. Shade-repressed QQS attenuates the conversion of starch to protein and thus reduced leaf area. Our results suggest that PIF-dependent gene regulation coordinates multiple SAS responses, including altered stem growth via ARF18, as well as altered leaf growth and metabolism via QQS.
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Affiliation(s)
- Yuebin Jia
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Jinan, Shandong, 250014, China
| | - Xiangpei Kong
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Kongqin Hu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Mengqiang Cao
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Jiajia Liu
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Changle Ma
- Shandong Provincial Key Laboratory of Plant Stress, College of Life Sciences, Shandong Normal University, Jinan, Shandong, 250014, China
| | - Siyi Guo
- The key Laboratory of Plant Stress Biology, School of Life Science, Henan University, Kaifeng, 475004, China
| | - Xianzheng Yuan
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, 266237, China
| | - Shan Zhao
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, Shandong, 266237, China
| | - Hélène S Robert
- Mendel Centre for Genomics and Proteomics of Plants Systems, CEITEC MU - Central European Institute of Technology, Masaryk University, Brno, 004205, Czech Republic
| | - Cuiling Li
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Huiyu Tian
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
| | - Zhaojun Ding
- The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, College of Life Sciences, Shandong University, Qingdao, Shandong, 266237, China
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Chen T, Zhang H, Zeng R, Wang X, Huang L, Wang L, Wang X, Zhang L. Shade Effects on Peanut Yield Associate with Physiological and Expressional Regulation on Photosynthesis and Sucrose Metabolism. Int J Mol Sci 2020; 21:ijms21155284. [PMID: 32722456 PMCID: PMC7432592 DOI: 10.3390/ijms21155284] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 07/15/2020] [Accepted: 07/20/2020] [Indexed: 01/07/2023] Open
Abstract
Intercropping improves land utilization with more crops grown together; however, shorter crops in intercropping experience stress, being shaded by the taller crops. Systematic changes in phenotype, physiology, yield, and gene regulation under shade stress in peanut are largely unknown, although shade responses have been well analyzed in model plants. We exposed peanut plants to simulated 40% and 80% shade for 15 and 30 days at the seedling stage, flowering stage, and both stages. Shade caused the increased elongation growth of the main stem, internode, and leaf, and elongation was positively associated with auxin levels. Shade stress reduced peanut yield. Further comparative RNA-seq analyses revealed expressional changes in many metabolism pathways and common core sets of expressional regulations in all shade treatments. Expressional downregulation of most genes for light-harvesting and photosynthesis agreed with the observed decreased parameters of photosynthesis processes. Other major regulations included expressional downregulation of most core genes in the sucrose and starch metabolism, and growth-promoting genes in plant hormone signal pathways. Together, the results advance our understanding of physiological and molecular regulation in shade avoidance in peanut, which could guide the breeding designing in the intercropping system.
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Affiliation(s)
- Tingting Chen
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Huajian Zhang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Ruier Zeng
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Xinyue Wang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Luping Huang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Leidi Wang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Xuewen Wang
- Department of Genetics, University of Georgia, Athens, GA 30602, USA
- Correspondence: (X.W.); (L.Z.)
| | - Lei Zhang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
- Correspondence: (X.W.); (L.Z.)
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Tian T, Ma L, Liu Y, Xu D, Chen Q, Li G. Arabidopsis FAR-RED ELONGATED HYPOCOTYL3 Integrates Age and Light Signals to Negatively Regulate Leaf Senescence. THE PLANT CELL 2020; 32:1574-1588. [PMID: 32152188 PMCID: PMC7203920 DOI: 10.1105/tpc.20.00021] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 03/06/2020] [Indexed: 05/02/2023]
Abstract
Leaf senescence is tightly regulated by numerous internal cues and external environmental signals. The process of leaf senescence is promoted by a low ratio of red to far-red (R:FR) light, FR light, or extended darkness and is repressed by a high ratio of R:FR light or R light. However, the precise regulatory mechanisms by which plants assess external light signals and their internal cues to initiate and control the process of leaf senescence remain largely unknown. In this study, we discovered that the light-signaling protein FAR-RED ELONGATED HYPOCOTYL3 (FHY3) negatively regulates age-induced and light-mediated leaf senescence in Arabidopsis (Arabidopsis thaliana). FHY3 directly binds to the promoter region of transcription factor gene WRKY28 to repress its expression, thus negatively regulating salicylic acid biosynthesis and senescence. Both the fhy3 loss-of-function mutant and WRKY28-overexpressing Arabidopsis plants exhibited early senescence under high R:FR light conditions, indicating that the FHY3-WRKY28 transcriptional module specifically prevents leaf senescence under high R:FR light conditions. This study reveals the physiological and molecular functions of FHY3 and WRKY28 in leaf senescence and provides insight into the regulatory mechanism by which plants integrate dynamic environmental light signals and internal cues to initiate and control leaf senescence.
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Affiliation(s)
- Tian Tian
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
| | - Lin Ma
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
| | - Ying Liu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
| | - Di Xu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
| | - Qingshuai Chen
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
| | - Gang Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an 271018, China
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