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Rudra Gouda M, Kumaranag K, Ramakrishnan B, Subramanian S. Deciphering the complex interplay between gut microbiota and crop residue breakdown in forager and hive bees ( Apis mellifera L.). CURRENT RESEARCH IN MICROBIAL SCIENCES 2024; 6:100233. [PMID: 38572354 PMCID: PMC10990707 DOI: 10.1016/j.crmicr.2024.100233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024] Open
Abstract
This study investigates A. mellifera gut microbiota diversity and enzymatic activities, aiming to utilize identified isolates for practical applications in sustainable crop residue management and soil health enhancement. This study sampled honey bees, analyzed gut bacterial diversity via 16S rRNA gene, and screened isolates for cellulolytic, hemicellulolytic, and pectinolytic activities, with subsequent assessment of enzymatic potential. The study reveals that cellulolytic and hemicellulolytic bacterial isolates, mainly from γ-Proteobacteria, Actinobacteria, and Firmicutes, have significant potential for crop residue management. Some genera, like Aneurinibacillus, Bacillus, Clostridium, Enterobacter, Serratia, Stenotrophomonas, Apilactobacillus, Lysinibacillus, and Pseudomonas, are very good at breaking down cellulose and hemicellulase. Notable cellulose-degrading genera include Cedecea (1.390 ± 0.57), Clostridium (1.360 ± 0.86 U/mg), Enterobacter (1.493 ± 1.10 U/mg), Klebsiella (1.380 ± 2.03 U/mg), and Serratia (1.402 ± 0.31 U/mg), while Aneurinibacillus (1.213 ± 1.12 U/mg), Bacillus (3.119 ± 0.55 U/mg), Enterobacter (1.042 ± 0.14 U/mg), Serratia (1.589 ± 0.05 U/mg), and Xanthomonas (1.156 ± 0.08 U/mg) excel in hemicellulase activity. Specific isolates with high cellulolytic and hemicellulolytic activities are identified, highlighting their potential for crop residue management. The research explores gut bacterial compartmentalization in A. mellifera, emphasising gut physiology's role in cellulose and hemicellulose digestion. Pectinolytic activity is observed, particularly in the Bacillaceae clade (3.229 ± 0.02), contributing to understanding the honey bee gut microbiome. The findings offer insights into microbiome diversity and enzymatic capabilities, with implications for biotechnological applications in sustainable crop residue management. The study concludes by emphasizing the need for ongoing research to uncover underlying mechanisms and ecological factors influencing gut microbiota, impacting honey bee health, colony dynamics, and advancements in crop residue management.
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Affiliation(s)
- M.N. Rudra Gouda
- Division of Entomology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - K.M. Kumaranag
- Division of Entomology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - B. Ramakrishnan
- Division of Microbiology, Indian Agricultural Research Institute, New Delhi, 110012, India
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Agarbati A, Gattucci S, Canonico L, Ciani M, Comitini F. Yeast communities related to honeybees: occurrence and distribution in flowers, gut mycobiota, and bee products. Appl Microbiol Biotechnol 2024; 108:175. [PMID: 38276993 PMCID: PMC10817854 DOI: 10.1007/s00253-023-12942-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 12/05/2023] [Accepted: 12/13/2023] [Indexed: 01/27/2024]
Abstract
Honeybee (Apis mellifera) is an important agricultural pollinator and a model for sociality. In this study, a deep knowledge on yeast community characterizing the honeybees' environmental was carried out. For this, a total of 93 samples were collected: flowers as food sources, bee gut mycobiota, and bee products (bee pollen, bee bread, propolis), and processed using culture-dependent techniques and a molecular approach for identification. The occurrence of yeast populations was quantitatively similar among flowers, bee gut mycobiota, and bee products. Overall, 27 genera and 51 species were identified. Basidiomycetes genera were predominant in the flowers while the yeast genera detected in all environments were Aureobasidium, Filobasidium, Meyerozyma, and Metschnikowia. Fermenting species belonging to the genera Debaryomyces, Saccharomyces, Starmerella, Pichia, and Lachancea occurred mainly in the gut, while most of the identified species of bee products were not found in the gut mycobiota. Five yeast species, Meyerozyma guilliermondii, Debaryomyces hansenii, Hanseniaspora uvarum, Hanseniaspora guilliermondii, and Starmerella roseus, were present in both summer and winter, thus indicating them as stable components of bee mycobiota. These findings can help understand the yeast community as a component of the bee gut microbiota and its relationship with related environments, since mycobiota characterization was still less unexplored. In addition, the gut microbiota, affecting the nutrition, endocrine signaling, immune function, and pathogen resistance of honeybees, represents a useful tool for its health evaluation and could be a possible source of functional yeasts. KEY POINTS: • The stable yeast populations are represented by M. guilliermondii, D. hansenii, H. uvarum, H. guilliermondii, and S. roseus. • A. pullulans was the most abondance yeast detective in the flowers and honeybee guts. • Aureobasidium, Meyerozyma, Pichia, and Hanseniaspora are the main genera resident in gut tract.
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Affiliation(s)
- Alice Agarbati
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - Silvia Gattucci
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - Laura Canonico
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - Maurizio Ciani
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - Francesca Comitini
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131, Ancona, Italy.
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Wang Y, Gao P, Zheng J, Li H, Meng L, Li B. Effects of parasitism by a parasitoid wasp on the gut microbiota in a predaceous lady beetle host. PEST MANAGEMENT SCIENCE 2023; 79:4501-4507. [PMID: 37418555 DOI: 10.1002/ps.7652] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 06/17/2023] [Accepted: 07/07/2023] [Indexed: 07/09/2023]
Abstract
BACKGROUND The gut microbiota has an intimate relationship with insect hosts and this relationship can become complicated with parasitic organisms being involved with the host. To date there has been limited evidence for the relevance of parasitism of the host by parasitoids to host gut microbiota, especially in host insect predators. Here, our study examined gut microbiotas in larvae of the predaceous lady beetle, Coccinella septempunctata, in response to their parasitism by Homalotylus eytelweinii regarding the development progress of offspring parasitoids. RESULTS Overall 58.5% of gut bacterial operational taxonomic units (OTUs) in the parasitized lady beetle were different from those in the unparasitized host. The phylum Proteobacteria abundance increased while Firmicutes decreased in parasitized hosts compared to the unparasitized. The abundance of genus Aeribacillus decreased substantially in the parasitized lady beetle across all stages of the offspring development compared to the unparasitized host. The α-diversity of the gut microbiota in a parasitized lady beetle larva increased at the early stage of offspring parasitoids and then returned over the intermediate and later stages. Analyses of β-diversity indicated that the gut microbial community in a parasitized lady beetle was distinct from that in an unparasitized one and different between early or middle and late stages of offspring parasitoids in parasitized hosts. CONCLUSION Our results provide evidence for the relevance of the gut microbiota to interactions between a lady beetle host and its parasitoid. Our study provides a starting point for further investigations of the role the gut microbiota may play in host-parasitoid interactions. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Yansong Wang
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Ping Gao
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Jie Zheng
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Hongran Li
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Ling Meng
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Baoping Li
- College of Plant Protection, Nanjing Agricultural University, Nanjing, China
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Yitbarek S, Guittar J, Knutie SA, Ogbunugafor CB. Deconstructing taxa x taxa xenvironment interactions in the microbiota: A theoretical examination. iScience 2023; 26:107875. [PMID: 37860776 PMCID: PMC10583047 DOI: 10.1016/j.isci.2023.107875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 03/21/2023] [Accepted: 09/07/2023] [Indexed: 10/21/2023] Open
Abstract
A major objective of microbial ecology is to identify how the composition of microbial taxa shapes host phenotypes. However, most studies focus on pairwise interactions and ignore the potentially significant effects of higher-order microbial interactions.Here, we quantify the effects of higher-order interactions among taxa on host infection risk. We apply our approach to an in silico dataset that is built to resemble a population of insect hosts with gut-associated microbial communities at risk of infection from an intestinal parasite across a breadth of nutrient environmental contexts.We find that the effect of higher-order interactions is considerable and can change appreciably across environmental contexts. Furthermore, we show that higher-order interactions can stabilize community structure thereby reducing host susceptibility to parasite invasion.Our approach illustrates how incorporating the effects of higher-order interactions among gut microbiota across environments can be essential for understanding their effects on host phenotypes.
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Affiliation(s)
- Senay Yitbarek
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - John Guittar
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA
- Kellogg Biological Station, Michigan State University, Hickory Corners, MI 49060, USA
| | - Sarah A. Knutie
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA
- Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA
| | - C. Brandon Ogbunugafor
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Santa Fe Institute, Santa Fe, NM 87501, USA
- Vermont Complex Systems Center, University of Vermont, Burlington, VT 05405, USA
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ElKraly OA, Awad M, El-Saadany HM, Hassanein SE, Elrahman TA, Elnagdy SM. Impact of gut microbiota composition on black cutworm, Agrotis ipsilon (hufnagel) metabolic indices and pesticide degradation. Anim Microbiome 2023; 5:44. [PMID: 37715236 PMCID: PMC10504801 DOI: 10.1186/s42523-023-00264-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 09/03/2023] [Indexed: 09/17/2023] Open
Abstract
Endosymbionts are known to have significant effects on their insect hosts, including nutrition, reproduction, and immunity. Insects gut microbiota is a critical component that affects their physiological and behavioral characteristics. The black cutworm (BCW), Agrotis ipsilon, is an economically important lepidopteran pest that has a diverse gut microbiome composed of nine species belonging to three phyla: Proteobacteria, Actinobacteria, and Firmicutes. This study was conducted to investigate the diversity of gut bacteria isolated from BCW larvae and moths and their effects on metabolism and pesticide degradation. The bacterial isolates were identified using the 16 S rRNA gene. The study showed that the gut microbiome composition significantly affected the metabolism of BCW larvae. Based on the screening results of synthesis of digestive enzymes and pesticide degradation, Brachybacterium conglomeratum and Glutamicibacter sp were selected to perform the remaining experiments as single isolates and consortium. The consortium-fed larvae showed high metabolic indices compared to antibiotic-fed larvae and the control. The gut bacteria were also shown to degrade three pesticide groups. Concerns regarding the health risk of chlorpyrifos have been raised due to its extensive use in agriculture. The isolated B. conglomeratum was more effective in chlorpyrifos degradation than the consortium. Furthermore, the study also examined the presence of sex related endosymbionts (Wolbachia, Spiroplasma, and Rickettsia) in the reproductive tissues of adults. The outcomes demonstrated that none of the examined endosymbionts existed. In conclusion, the study highlights the importance of the gut microbiome in insect physiology and behavior and its potential applications in biotechnology. It provides insights into developing eco-friendly pest control and bioremediation strategies using gut bacteria.
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Affiliation(s)
- Omnia Abdullah ElKraly
- Botany and Microbiology Department, Faculty of Science, Cairo University, Gamma St, Giza, 12613, Giza, Egypt
- Bio-insecticides Production Unit, Plant Protection Research Institute (PPRI), Agricultural Research Center (ARC), Ministry of Agriculture, Dokki, Giza, Egypt
| | - Mona Awad
- Department of Economic Entomology and Pesticides, Faculty of Agriculture, Cairo University, Cairo, Egypt.
| | - Hassan Mohamed El-Saadany
- Bio-insecticides Production Unit, Plant Protection Research Institute (PPRI), Agricultural Research Center (ARC), Ministry of Agriculture, Dokki, Giza, Egypt
| | - Sameh E Hassanein
- College of Biotechnology, Misr University for Science and Technology (MUST), Giza, Egypt
| | - Tahany Abd Elrahman
- Botany and Microbiology Department, Faculty of Science, Cairo University, Gamma St, Giza, 12613, Giza, Egypt
| | - Sherif M Elnagdy
- Botany and Microbiology Department, Faculty of Science, Cairo University, Gamma St, Giza, 12613, Giza, Egypt.
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Castañeda-Molina Y, Marulanda-Moreno SM, Saldamando-Benjumea C, Junca H, Moreno-Herrera CX, Cadavid-Restrepo G. Microbiome analysis of Spodoptera frugiperda (Lepidoptera, Noctuidae) larvae exposed to Bacillus thuringiensis (Bt) endotoxins. PeerJ 2023; 11:e15916. [PMID: 37719127 PMCID: PMC10503500 DOI: 10.7717/peerj.15916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 07/27/2023] [Indexed: 09/19/2023] Open
Abstract
Background Spodoptera frugiperda (or fall armyworm, FAW) is a polyphagous pest native to Western Hemisphere and recently discovered in the Eastern Hemisphere. In Colombia, S. frugiperda is recognized as a pest of economic importance in corn. The species has genetically differentiated into two host populations named "corn" and "rice" strains. In 2012, a study made in central Colombia demonstrated that the corn strain is less susceptible to Bacillus thuringiensis (Bt) endotoxins (Cry1Ac and Cry 1Ab) than the rice strain. In this country, Bt transgenic corn has been extensively produced over the last 15 years. Since gut microbiota plays a role in the physiology and immunity of insects, and has been implicated in promoting the insecticidal activity of Bt, in this study an analysis of the interaction between Bt endotoxins and FAW gut microbiota was made. Also, the detection of endosymbionts was performed here, as they might have important implications in the biological control of a pest. Methods The composition and diversity of microbiomes associated with larval specimens of S. frugiperda(corn strain) was investigated in a bioassay based on six treatments in the presence/absence of Bt toxins and antibiotics (Ab) through bacterial isolate analyses and by high throughput sequencing of the bacterial 16S rRNA gene. Additionally, species specific primers were used, to detect endosymbionts from gonads in S. frugiperda corn strain. Results Firmicutes, Proteobacteria and Bacteroidota were the most dominant bacterial phyla found in S. frugiperda corn strain. No significant differences in bacteria species diversity and richness among the six treatments were found. Two species of Enterococcus spp., E. mundtii and E. casseliflavus were detected in treatments with Bt and antibiotics, suggesting that they are less susceptible to both of them. Additionally, the endosymbiont Arsenophonus was also identified on treatments in presence of Bt and antibiotics. The results obtained here are important since little knowledge exists about the gut microbiota on this pest and its interaction with Bt endotoxins. Previous studies made in Lepidoptera suggest that alteration of gut microbiota can be used to improve the management of pest populations, demonstrating the relevance of the results obtained in this work.
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Affiliation(s)
- Yuliana Castañeda-Molina
- Departamento de Biociencias/Grupo de investigación Microbiodiversidad y Bioprospección/Laboratorio de Biología Celular y Molecular, Universidad Nacional de Colombia, Medellín, Antioquia, Colombia
| | - Sandra María Marulanda-Moreno
- Departamento de Biociencias/Grupo de investigación Microbiodiversidad y Bioprospección/Laboratorio de Biología Celular y Molecular, Universidad Nacional de Colombia, Medellín, Antioquia, Colombia
| | - Clara Saldamando-Benjumea
- Departamento de Biociencias/Grupo de Biotecnologia Vegetal UNALMED-CIB/Laboratorio de Ecología y Evolución de Insectos, Universidad Nacional de Colombia, Medellin, Antioquia, Colombia
| | - Howard Junca
- RG Microbial Ecology: Metabolism, Genomics & Evolution, Div. Ecogenomics & Holobionts, Microbiomas Foundation, Chía, Cundinamarca, Colombia
| | - Claudia Ximena Moreno-Herrera
- Departamento de Biociencias/Grupo de investigación Microbiodiversidad y Bioprospección/Laboratorio de Biología Celular y Molecular, Universidad Nacional de Colombia, Medellín, Antioquia, Colombia
| | - Gloria Cadavid-Restrepo
- Departamento de Biociencias/Grupo de investigación Microbiodiversidad y Bioprospección/Laboratorio de Biología Celular y Molecular, Universidad Nacional de Colombia, Medellín, Antioquia, Colombia
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Liu YC, Chen TH, Huang YF, Chen CL, Nai YS. Investigation of the fall armyworm (Spodoptera frugiperda) gut microbiome and entomopathogenic fungus-induced pathobiome. J Invertebr Pathol 2023; 200:107976. [PMID: 37541570 DOI: 10.1016/j.jip.2023.107976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 06/20/2023] [Accepted: 07/03/2023] [Indexed: 08/06/2023]
Abstract
The gut microflora plays an important role in insect development and physiology. The gut bacterial microbiome of the fall armyworm (FAW), Spodoptera frugiperda, in both cornfield and laboratory-reared populations was investigated using a 16S metagenomic approach. The alpha- and beta-diversity of the cornfield FAW populations varied among sampling sites and were higher than those of the laboratory-reared FAW population, indicating that different diets and environments influence the gut bacterial composition. To better understand the interaction between the microbiome and entomopathogenic fungi (EPF), FAWs from organic and conventionally managed corn fields and from the laboratory-reared colony were inoculated with Beauveria bassiana NCHU-153 (Bb-NCHU-153). A longer median lethal time (LT50) was observed in the Bb-NCHU-153-infected cornfield FAW population than in the laboratory-reared FAWs. In terms of the microbiome, three Bb-NCHU-153-infected FAW groups showed different gut bacterial compositions compared to noninfected FAW. Further investigation of the cooccurrence network and linear discriminant analysis (LDA) of effect size (LEfSe) revealed that the enriched bacterial genera, such as Enterococcus, Serratia, Achromobacter, and Tsukamurella, in the gut might play the role of opportunistic pathogens after fungal infection; in contrast, some gut bacteria of Methylobacterium, Marinomonas, Paenochrobactrum, Pseudomonas, Acinetobacter, Delftia, Dietzia, Gordonia, Leucobacter, Paracoccus, and Stenotrophomonas might be probiotics against EPF infection. These results indicated that EPF infection can change the gut bacterial composition and lead to a pathobiome in the FAW and that some bacterial species might protect the FAW from EPF infection. These findings could be applied to the design of pathobiome-inducing biocontrol strategies.
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Affiliation(s)
- Yao-Chia Liu
- Department of Entomology, National Chung-Hsing University, Taichung 402, Taiwan
| | - Tzu-Han Chen
- Department of Entomology, National Chung-Hsing University, Taichung 402, Taiwan
| | - Yu-Feng Huang
- Department of Entomology, National Chung-Hsing University, Taichung 402, Taiwan; Department of Computer Science and Engineering, Yuan-Ze University, Tao-Yuan City 32003, Taiwan
| | - Chang-Lin Chen
- Department of Horticulture, National Chung-Hsing University, Taichung 402, Taiwan
| | - Yu-Shin Nai
- Department of Entomology, National Chung-Hsing University, Taichung 402, Taiwan.
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Kong HG, Son JS, Chung JH, Lee S, Kim JS, Ryu CM. Population Dynamics of Intestinal Enterococcus Modulate Galleria mellonella Metamorphosis. Microbiol Spectr 2023; 11:e0278022. [PMID: 37358445 PMCID: PMC10434003 DOI: 10.1128/spectrum.02780-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 05/24/2023] [Indexed: 06/27/2023] Open
Abstract
Microbes found in the digestive tracts of insects are known to play an important role in their host's behavior. Although Lepidoptera is one of the most varied insect orders, the link between microbial symbiosis and host development is still poorly understood. In particular, little is known about the role of gut bacteria in metamorphosis. Here, we explored gut microbial biodiversity throughout the life cycle of Galleria mellonella, using amplicon pyrosequencing with the V1 to V3 regions, and found that Enterococcus spp. were abundant in larvae, while Enterobacter spp. were predominant in pupae. Interestingly, eradication of Enterococcus spp. from the digestive system accelerated the larval-to-pupal transition. Furthermore, host transcriptome analysis demonstrated that immune response genes were upregulated in pupae, whereas hormone genes were upregulated in larvae. In particular, regulation of antimicrobial peptide production in the host gut correlated with developmental stage. Certain antimicrobial peptides inhibited the growth of Enterococcus innesii, a dominant bacterial species in the gut of G. mellonella larvae. Our study highlights the importance of gut microbiota dynamics on metamorphosis as a consequence of the active secretion of antimicrobial peptides in the G. mellonella gut. IMPORTANCE First, we demonstrated that the presence of Enterococcus spp. is a driving force for insect metamorphosis. RNA sequencing and peptide production subsequently revealed that antimicrobial peptides targeted against microorganisms in the gut of Galleria mellonella (wax moth) did not kill Enterobacteria species, but did kill Enterococcus species, when the moth was at a certain stage of growth, and this promoted moth pupation.
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Affiliation(s)
- Hyun Gi Kong
- Infection Disease Research Center, KRIBB, Daejeon, South Korea
- Department of Plant Medicine, Chungbuk National University, Cheongju, South Korea
| | - Jin-Soo Son
- Infection Disease Research Center, KRIBB, Daejeon, South Korea
| | - Joon-Hui Chung
- Infection Disease Research Center, KRIBB, Daejeon, South Korea
| | - Soohyun Lee
- Infection Disease Research Center, KRIBB, Daejeon, South Korea
| | - Jun-Seob Kim
- Department of Nano-Bioengineering, Incheon National University, Incheon, South Korea
| | - Choong-Min Ryu
- Infection Disease Research Center, KRIBB, Daejeon, South Korea
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Chen H, Hao D, Chen C, Sun Y, Yu X. Effects of midgut bacteria in Hyphantria cunea (Lepidoptera: Erebidae) on nuclear polyhedrosis virus and Bacillus thuringiensis (Bacillales: Bacillaceae). JOURNAL OF INSECT SCIENCE (ONLINE) 2023; 23:1. [PMID: 36916277 PMCID: PMC10011879 DOI: 10.1093/jisesa/iead009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 12/05/2022] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Hyphantria cunea Drury (Lepidoptera: Erebidae) is a quarantine pest in China that can cause damage to hundreds of plants. As biological control agents, Nuclear Polyhedrosis Virus (NPV) and Bacillus thuringiensis Berliner (Bacillales: Bacillaceae) (Bt) are commonly used to inhibit the prevalence of H. cunea. To investigate the role of midgut bacteria in the infection of NPV and Bt in H. cunea, we performed a series of tests, including isolating the dominant culturable bacteria in the midgut, eliminating intestinal bacteria, and respectively inoculating the dominant strains with NPV and Bt for bioassay. Two dominant bacteria, Klebsiella oxytoca Lautrop (Enterobacterales: Enterobacteriaceae) and Enterococcus mundtii Collins (Lactobacillales: Enterococcaceae), in the midgut of H. cunea were identified, and a strain of H. cunea larvae without intestinal bacteria was successfully established. In the bioassays of entomopathogen infection, K. oxytoca showed significant synergistic effects with both NPV and Bt on the death of H. cunea. In contrast, E. mundtii played antagonistic effects. This phenomenon may be attributed to the differences in the physico-chemical properties of the two gut bacteria and the alkaline environment required for NPV and Bt to infect the host. It is worth noting that the enhanced insecticidal activity of K. oxytoca on NPV and Bt provides a reference for future biological control of H. cunea by intestinal bacteria.
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Affiliation(s)
- Hongjian Chen
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | | | - Changyu Chen
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Yuhang Sun
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaohang Yu
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
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Picciotti U, Araujo Dalbon V, Ciancio A, Colagiero M, Cozzi G, De Bellis L, Finetti-Sialer MM, Greco D, Ippolito A, Lahbib N, Logrieco AF, López-Llorca LV, Lopez-Moya F, Luvisi A, Mincuzzi A, Molina-Acevedo JP, Pazzani C, Scortichini M, Scrascia M, Valenzano D, Garganese F, Porcelli F. "Ectomosphere": Insects and Microorganism Interactions. Microorganisms 2023; 11:microorganisms11020440. [PMID: 36838405 PMCID: PMC9967823 DOI: 10.3390/microorganisms11020440] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 01/30/2023] [Accepted: 02/06/2023] [Indexed: 02/12/2023] Open
Abstract
This study focuses on interacting with insects and their ectosymbiont (lato sensu) microorganisms for environmentally safe plant production and protection. Some cases help compare ectosymbiont microorganisms that are insect-borne, -driven, or -spread relevant to endosymbionts' behaviour. Ectosymbiotic bacteria can interact with insects by allowing them to improve the value of their pabula. In addition, some bacteria are essential for creating ecological niches that can host the development of pests. Insect-borne plant pathogens include bacteria, viruses, and fungi. These pathogens interact with their vectors to enhance reciprocal fitness. Knowing vector-phoront interaction could considerably increase chances for outbreak management, notably when sustained by quarantine vector ectosymbiont pathogens, such as the actual Xylella fastidiosa Mediterranean invasion episode. Insect pathogenic viruses have a close evolutionary relationship with their hosts, also being highly specific and obligate parasites. Sixteen virus families have been reported to infect insects and may be involved in the biological control of specific pests, including some economic weevils. Insects and fungi are among the most widespread organisms in nature and interact with each other, establishing symbiotic relationships ranging from mutualism to antagonism. The associations can influence the extent to which interacting organisms can exert their effects on plants and the proper management practices. Sustainable pest management also relies on entomopathogenic fungi; research on these species starts from their isolation from insect carcasses, followed by identification using conventional light or electron microscopy techniques. Thanks to the development of omics sciences, it is possible to identify entomopathogenic fungi with evolutionary histories that are less-shared with the target insect and can be proposed as pest antagonists. Many interesting omics can help detect the presence of entomopathogens in different natural matrices, such as soil or plants. The same techniques will help localize ectosymbionts, localization of recesses, or specialized morphological adaptation, greatly supporting the robust interpretation of the symbiont role. The manipulation and modulation of ectosymbionts could be a more promising way to counteract pests and borne pathogens, mitigating the impact of formulates and reducing food insecurity due to the lesser impact of direct damage and diseases. The promise has a preventive intent for more manageable and broader implications for pests, comparing what we can obtain using simpler, less-specific techniques and a less comprehensive approach to Integrated Pest Management (IPM).
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Affiliation(s)
- Ugo Picciotti
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
- Department of Marine Science and Applied Biology, University of Alicante, 03690 Alicante, Spain
| | | | - Aurelio Ciancio
- Institute for Sustainable Plant Protection, National Research Council (CNR), Via G. Amendola 122/D, 70126 Bari, Italy
| | - Mariantonietta Colagiero
- Institute for Sustainable Plant Protection, National Research Council (CNR), Via G. Amendola 122/D, 70126 Bari, Italy
| | - Giuseppe Cozzi
- Institute of Food Production Sciences, National Research Council (CNR), Via G. Amendola 122/O, 70126 Bari, Italy
| | - Luigi De Bellis
- Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy
| | | | - Davide Greco
- Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy
| | - Antonio Ippolito
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
| | - Nada Lahbib
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
- Faculty of Sciences of Tunis, University of Tunis El-Manar, Tunis 1002, Tunisia
| | - Antonio Francesco Logrieco
- Institute of Food Production Sciences, National Research Council (CNR), Via G. Amendola 122/O, 70126 Bari, Italy
| | | | - Federico Lopez-Moya
- Department of Marine Science and Applied Biology, University of Alicante, 03690 Alicante, Spain
| | - Andrea Luvisi
- Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy
| | - Annamaria Mincuzzi
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
| | - Juan Pablo Molina-Acevedo
- Colombian Corporation for Agricultural Research Agrosavia C. I. Turipana-AGROSAVIA, Km. 13, Vía Montería-Cereté 230558, Colombia
| | - Carlo Pazzani
- Dipartimento di Bioscienze, Biotecnologie e Ambiente (DBBA), University of Bari Aldo Moro, 70126 Bari, Italy
| | - Marco Scortichini
- Research Centre for Olive, Fruit and Citrus Crops, Council for Agricultural Research and Economics (CREA), 00134 Roma, Italy
| | - Maria Scrascia
- Dipartimento di Bioscienze, Biotecnologie e Ambiente (DBBA), University of Bari Aldo Moro, 70126 Bari, Italy
| | - Domenico Valenzano
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
| | - Francesca Garganese
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
- Correspondence:
| | - Francesco Porcelli
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, University of Bari Aldo Moro, 70126 Bari, Italy
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The virtual microbiome: A computational framework to evaluate microbiome analyses. PLoS One 2023; 18:e0280391. [PMID: 36753469 PMCID: PMC9907852 DOI: 10.1371/journal.pone.0280391] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 12/28/2022] [Indexed: 02/09/2023] Open
Abstract
Microbiomes have been the focus of a substantial research effort in the last decades. The composition of microbial populations is normally determined by comparing DNA sequences sampled from those populations with the sequences stored in genomic databases. Therefore, the amount of information available in databanks should be expected to constrain the accuracy of microbiome analyses. Albeit normally ignored in microbiome studies, this constraint could severely compromise the reliability of microbiome data. To test this hypothesis, we generated virtual bacterial populations that exhibit the ecological structure of real-world microbiomes. Confronting the analyses of virtual microbiomes with their original composition revealed critical issues in the current approach to characterizing microbiomes, issues that were empirically confirmed by analyzing the microbiome of Galleria mellonella larvae. To reduce the uncertainty of microbiome data, the effort in the field must be channeled towards significantly increasing the amount of available genomic information and optimizing the use of this information.
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12
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Zheng R, Cheng L, Peng J, Li Q, Yang F, Yang D, Xia Y, Tang Q. Comparative analysis of gut microbiota and immune genes linked with the immune system of wild and captive Spodoptera frugiperda (Lepidoptera: Noctuidae). DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2023; 138:104530. [PMID: 36084754 DOI: 10.1016/j.dci.2022.104530] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 08/29/2022] [Accepted: 09/01/2022] [Indexed: 06/15/2023]
Abstract
The fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith), is one of the most highly polyphagous invasive pests causing serious damage to maize crops in China. However, little is known about the gut immune responses to the environment, particularly along the migration routes in Jianghuai, China, throughout the autumn and winter. In this study, high-throughput sequencing and real-time quantitative PCR (RT-qPCR) were employed to examine the variations in immune genes and gut microbiome communities between captive and wild fall armyworm populations. Results showed that the diversity and community of the gut's microbes were higher in wild populations, and the average weighted UniFrac distance between bacterial taxa varied. A wide variety of immune genes were more abundant in the wild populations than in others. Results indicated that diets and different survival conditions impacted the gut microbiota and immune system of S. frugiperda, which was crucial for environmental adaptation. These differences in gut microbiota and immune responses between wild and captive Fall armyworms are critical for comprehending the symbiotic relationship between microbes, immune genes, and hosts. They also highlight the need for increased focus on developing more effective and environmentally friendly pest control methods.
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Affiliation(s)
- Renwen Zheng
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Luoling Cheng
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Jun Peng
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Qianqian Li
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Fan Yang
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Dehua Yang
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China
| | - Yuxian Xia
- School of Life Sciences, Chongqing University, Chongqing, 401331, China
| | - Qingfeng Tang
- Anhui Province Key Laboratory of Integrated Pest Management on Crops, Key Laboratory of Biology and Sustainable Management of Plant Diseases and Pests of Anhui Higher Education Institutes, School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China.
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13
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Sentis A, Hemptinne J, Magro A, Outreman Y. Biological control needs evolutionary perspectives of ecological interactions. Evol Appl 2022; 15:1537-1554. [PMID: 36330295 PMCID: PMC9624075 DOI: 10.1111/eva.13457] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 07/20/2022] [Accepted: 07/26/2022] [Indexed: 05/30/2024] Open
Abstract
While ecological interactions have been identified as determinant for biological control efficiency, the role of evolution remains largely underestimated in biological control programs. With the restrictions on the use of both pesticides and exotic biological control agents (BCAs), the evolutionary optimization of local BCAs becomes central for improving the efficiency and the resilience of biological control. In particular, we need to better account for the natural processes of evolution to fully understand the interactions of pests and BCAs, including in biocontrol strategies integrating human manipulations of evolution (i.e., artificial selection and genetic engineering). In agroecosystems, the evolution of BCAs traits and performance depends on heritable phenotypic variation, trait genetic architecture, selection strength, stochastic processes, and other selective forces. Humans can manipulate these natural processes to increase the likelihood of evolutionary trait improvement, by artificially increasing heritable phenotypic variation, strengthening selection, controlling stochastic processes, or overpassing evolution through genetic engineering. We highlight these facets by reviewing recent studies addressing the importance of natural processes of evolution and human manipulations of these processes in biological control. We then discuss the interactions between the natural processes of evolution occurring in agroecosystems and affecting the artificially improved BCAs after their release. We emphasize that biological control cannot be summarized by interactions between species pairs because pests and biological control agents are entangled in diverse communities and are exposed to a multitude of deterministic and stochastic selective forces that can change rapidly in direction and intensity. We conclude that the combination of different evolutionary approaches can help optimize BCAs to remain efficient under changing environmental conditions and, ultimately, favor agroecosystem sustainability.
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Affiliation(s)
- Arnaud Sentis
- INRAEAix Marseille University, UMR RECOVERAix‐en‐ProvenceFrance
| | - Jean‐Louis Hemptinne
- Laboratoire Évolution et Diversité biologiqueUMR 5174 CNRS/UPS/IRDToulouseFrance
- Université Fédérale de Toulouse Midi‐Pyrénées – ENSFEACastanet‐TolosanFrance
| | - Alexandra Magro
- Laboratoire Évolution et Diversité biologiqueUMR 5174 CNRS/UPS/IRDToulouseFrance
- Université Fédérale de Toulouse Midi‐Pyrénées – ENSFEACastanet‐TolosanFrance
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Fungi are more transient than bacteria in caterpillar gut microbiomes. Sci Rep 2022; 12:15552. [PMID: 36114345 PMCID: PMC9481635 DOI: 10.1038/s41598-022-19855-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 09/06/2022] [Indexed: 11/24/2022] Open
Abstract
Despite an increasing number of studies on caterpillar (Insecta: Lepidoptera) gut microbiota, bacteria have been emphasized more than fungi. Therefore, we lack data on whether fungal microbiota is resident or transient and shaped by factors similar to those of bacteria. We sampled nine polyphagous caterpillar species from several tree species at multiple sites to determine the factors shaping leaf and gut bacterial and fungal microbiota as well as the extent to which caterpillars acquire microbiota from their diet. We performed 16S and ITS2 DNA metabarcoding of the leaves and guts to determine the composition and richness of the respective microbiota. While spatial variables shaped the bacterial and fungal microbiota of the leaves, they only affected fungi in the guts, whereas the bacteria were shaped primarily by caterpillar species, with some species harboring more specific bacterial consortia. Leaf and gut microbiota significantly differed; in bacteria, this difference was more pronounced. The quantitative similarity between leaves and guts significantly differed among caterpillar species in bacteria but not fungi, suggesting that some species have more transient bacterial microbiota. Our results suggest the complexity of the factors shaping the gut microbiota, while highlighting interspecific differences in microbiota residency within the same insect functional group.
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Zhang J, Gao S, Zheng F, Wang N. Intestinal Bacterial Diversity and Functional Analysis of Three Lepidopteran Corn Ear Worm Larvae. INSECTS 2022; 13:740. [PMID: 36005365 PMCID: PMC9409944 DOI: 10.3390/insects13080740] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Revised: 08/13/2022] [Accepted: 08/15/2022] [Indexed: 06/15/2023]
Abstract
Insects, as the most abundant animal group on earth, and their symbionts help their hosts to adapt to various environments. Conogethes punctiferalis, Ostrinia furnacalis and Helicoverpa armigera are three main pests co-occurring in the ear stage of corn, which significantly affect the yield and quality of corn. The purpose of this study was to compare the diversity and function of the intestinal bacteria of the three co-occurring lepidopteran pests, C. punctiferalis, O. furnacalis and H. armigera, and to explore the reason of their prevalence from the microbiota's view. Our results showed the difference of diversity and abundance of the gut bacteria of three co-occurring lepidopteran pests at the ear stage. Proteobacteria and Firmicutes were the dominant phyla, and the Enterobacteriaceae and Enterococcaceae were the dominant families in the three pests. Compared with the other two pests, Bacteroidetes was found much more in C. punctiferalis. In addition, C. punctiferalis showed more correlation and similarity in bacteria composition with corn endophytic bacteria, as well as had obvious advantages in metabolic, environmental information processing, cellular processes and organic systems function pathways. Our findings may provide insight into the prevalence of corn earworm larvae from the perspective of gut microbiota and function prediction.
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16
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Siddiqui JA, Khan MM, Bamisile BS, Hafeez M, Qasim M, Rasheed MT, Rasheed MA, Ahmad S, Shahid MI, Xu Y. Role of Insect Gut Microbiota in Pesticide Degradation: A Review. Front Microbiol 2022; 13:870462. [PMID: 35591988 PMCID: PMC9111541 DOI: 10.3389/fmicb.2022.870462] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Accepted: 02/25/2022] [Indexed: 01/09/2023] Open
Abstract
Insect pests cause significant agricultural and economic losses to crops worldwide due to their destructive activities. Pesticides are designed to be poisonous and are intentionally released into the environment to combat the menace caused by these noxious pests. To survive, these insects can resist toxic substances introduced by humans in the form of pesticides. According to recent findings, microbes that live in insect as symbionts have recently been found to protect their hosts against toxins. Symbioses that have been formed are between the pests and various microbes, a defensive mechanism against pathogens and pesticides. Insects' guts provide unique conditions for microbial colonization, and resident bacteria can deliver numerous benefits to their hosts. Insects vary significantly in their reliance on gut microbes for basic functions. Insect digestive tracts are very different in shape and chemical properties, which have a big impact on the structure and composition of the microbial community. Insect gut microbiota has been found to contribute to feeding, parasite and pathogen protection, immune response modulation, and pesticide breakdown. The current review will examine the roles of gut microbiota in pesticide detoxification and the mechanisms behind the development of resistance in insects to various pesticides. To better understand the detoxifying microbiota in agriculturally significant pest insects, we provided comprehensive information regarding the role of gut microbiota in the detoxification of pesticides.
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Affiliation(s)
- Junaid Ali Siddiqui
- Department of Entomology, South China Agricultural University, Guangzhou, China
| | - Muhammad Musa Khan
- Department of Entomology, South China Agricultural University, Guangzhou, China
| | | | - Muhammad Hafeez
- State Key Laboratory of Rice Biology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Muhammad Qasim
- Department of Agriculture and Forestry, Kohsar University Murree, Punjab, Pakistan
| | - Muhammad Tariq Rasheed
- Department of Life Sciences, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Muhammad Atif Rasheed
- Department of Entomology, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
| | - Sajjad Ahmad
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture and Rural Affairs, Guangzhou, China
- Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou, China
| | | | - Yijuan Xu
- Department of Entomology, South China Agricultural University, Guangzhou, China
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Similar Bacterial Communities among Different Populations of a Newly Emerging Invasive Species, Tuta absoluta (Meyrick). INSECTS 2022; 13:insects13030252. [PMID: 35323550 PMCID: PMC8951508 DOI: 10.3390/insects13030252] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 02/24/2022] [Accepted: 02/28/2022] [Indexed: 12/04/2022]
Abstract
Simple Summary As an invasive pest in China, the moth Tuta absoluta has spread extremely quickly, and now causes serious harm to the Chinese tomato industry. Understanding gut microbial diversity and composition can potentially identify the adaptive potential of introduced species. In this study, we found there were no significant differences in microbial diversity among three geographical populations, and the gut microbial compositions were similar among the Spanish, Xinjiang and Yunnan geographical populations. Abstract Microorganisms in the guts of insects enhance the adaptability of their hosts with different lifestyles, or those that live in different habitats. Tuta absoluta is an invasive pest that is a serious threat to tomato production in China. It has quickly spread and colonized Xinjiang, Yunnan and other provinces and regions. We used Illumina HiSeq next generation sequencing of the 16S rRNA gene to study and analyze the composition and diversity of the gut microbiota of three geographical populations of T. absoluta. At the phylum level, the most common bacteria in T. absoluta across all three geographical populations were Proteobacteria and Firmicutes. An uncultured bacterium in the Enterobacteriaceae was the dominant bacterial genus in the T. absoluta gut microbiotas. There were no significant differences in alpha diversity metrics among the Spanish, Yunnan and Xinjiang populations. The structures of the gut microbiota of the three populations were similar based on PCoA and NMDS results. The results confirmed that the microbial structures of T. absoluta from different regions were similar.
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Marín-Miret J, González-Serrano F, Rosas T, Baixeras J, Latorre A, Pérez-Cobas AE, Moya A. Temporal variations shape the gut microbiome ecology of the moth Brithys crini. Environ Microbiol 2022; 24:3939-3953. [PMID: 35243736 DOI: 10.1111/1462-2920.15952] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 02/18/2022] [Accepted: 02/22/2022] [Indexed: 11/30/2022]
Affiliation(s)
- Jesús Marín-Miret
- Institute for Integrative Systems Biology (I2SysBio), University of Valencia and CSIC, Valencia, Spain
| | - Francisco González-Serrano
- Institute for Integrative Systems Biology (I2SysBio), University of Valencia and CSIC, Valencia, Spain.,Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
| | - Tania Rosas
- Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain
| | - Joaquín Baixeras
- Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain
| | - Amparo Latorre
- Institute for Integrative Systems Biology (I2SysBio), University of Valencia and CSIC, Valencia, Spain.,Genomics and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research (FISABIO), Valencia, Spain.,Biomedical Research Center Network of Epidemiology and Public Health (CIBEResp), Madrid, Spain
| | - Ana Elena Pérez-Cobas
- Department of Microbiology, Ramón y Cajal Institute for Health Research (IRYCIS), Ramón y Cajal University Hospital, Madrid, Spain
| | - Andrés Moya
- Institute for Integrative Systems Biology (I2SysBio), University of Valencia and CSIC, Valencia, Spain.,Genomics and Health Area, Foundation for the Promotion of Sanitary and Biomedical Research (FISABIO), Valencia, Spain.,Biomedical Research Center Network of Epidemiology and Public Health (CIBEResp), Madrid, Spain
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Gallus M, Vogel RF, Ehrmann MA. Optimization of a cultivation procedure to selectively isolate lactic acid bacteria from insects. J Appl Microbiol 2021; 132:3001-3016. [PMID: 34957661 DOI: 10.1111/jam.15427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 12/17/2021] [Accepted: 12/21/2021] [Indexed: 11/26/2022]
Abstract
AIMS Natural niches and transmission routes of lactic acid bacteria (LAB) are highly versatile. Proposed routes of transmission to food fermentations are from plant material via insects or vice versa. This study aimed to establish a method for the selective isolation of LAB from insects. METHODS AND RESULTS Varied parameters that influence growth and selectivity are temperature, type of carbohydrate and atmosphere. Additionally, effects of antibiotics to suppress non-LAB species were evaluated. A model consortium consisting of 12 species representing different lifestyles was inoculated in growth medium to identify conditions for highest diversity and recovery rate. The method was applied to isolate LAB from Drosophila melanogaster, Sitotroga cerealella, Tribolium castaneum and Tenebrio molitor. Isolated species were Leuconostoc mesenteroides, Paucilactobacillus vaccinostercus and Lactiplantibacillus plantarum from D. melanogaster and L. mesenteroides, Pediococcus pentosaceus and Latilactobacillus curvatus from T. molitor. No LAB could be isolated from T. castaneum and S. cerealella. 16S rDNA amplicon sequencing of DNA obtained from insects corroborated part of our results. CONCLUSION A combination of different enrichment conditions ensures a high probability to isolate LAB species from insects and can be helpful above already known non-cultivation methods. SIGNIFICANCE AND IMPACT OF THE STUDY The novel method allows to selectively isolate LAB from insects and the strategy of the method is of interest to study other niches.
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Affiliation(s)
- Marion Gallus
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Gregor-Mendel-Str. 4, 85354, Freising, Germany
| | - Rudi F Vogel
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Gregor-Mendel-Str. 4, 85354, Freising, Germany
| | - Matthias A Ehrmann
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Gregor-Mendel-Str. 4, 85354, Freising, Germany
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Singh S, Singh A, Baweja V, Roy A, Chakraborty A, Singh IK. Molecular Rationale of Insect-Microbes Symbiosis-From Insect Behaviour to Mechanism. Microorganisms 2021; 9:microorganisms9122422. [PMID: 34946024 PMCID: PMC8707026 DOI: 10.3390/microorganisms9122422] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 11/18/2021] [Accepted: 11/21/2021] [Indexed: 12/27/2022] Open
Abstract
Insects nurture a panoply of microbial populations that are often obligatory and exist mutually with their hosts. Symbionts not only impact their host fitness but also shape the trajectory of their phenotype. This co-constructed niche successfully evolved long in the past to mark advanced ecological specialization. The resident microbes regulate insect nutrition by controlling their host plant specialization and immunity. It enhances the host fitness and performance by detoxifying toxins secreted by the predators and abstains them. The profound effect of a microbial population on insect physiology and behaviour is exploited to understand the host–microbial system in diverse taxa. Emergent research of insect-associated microbes has revealed their potential to modulate insect brain functions and, ultimately, control their behaviours, including social interactions. The revelation of the gut microbiota–brain axis has now unravelled insects as a cost-effective potential model to study neurodegenerative disorders and behavioural dysfunctions in humans. This article reviewed our knowledge about the insect–microbial system, an exquisite network of interactions operating between insects and microbes, its mechanistic insight that holds intricate multi-organismal systems in harmony, and its future perspectives. The demystification of molecular networks governing insect–microbial symbiosis will reveal the perplexing behaviours of insects that could be utilized in managing insect pests.
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Affiliation(s)
- Sujata Singh
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, New Delhi 110019, India; (S.S.); (V.B.)
- Department of Botany, Hansraj College, University of Delhi, New Delhi 110007, India;
| | - Archana Singh
- Department of Botany, Hansraj College, University of Delhi, New Delhi 110007, India;
| | - Varsha Baweja
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, New Delhi 110019, India; (S.S.); (V.B.)
- DBC i4 Center, Deshbandhu College, University of Delhi, Kalkaji, New Delhi 110019, India
| | - Amit Roy
- EVA 4.0 Unit, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, Suchdol, 16521 Prague 6, Czech Republic;
- Excelentní Tým pro Mitigaci (ETM), Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, Suchdol, 16521 Prague 6, Czech Republic
| | - Amrita Chakraborty
- EVA 4.0 Unit, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, Suchdol, 16521 Prague 6, Czech Republic;
- Correspondence: (A.C.); (I.K.S.)
| | - Indrakant Kumar Singh
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, New Delhi 110019, India; (S.S.); (V.B.)
- DBC i4 Center, Deshbandhu College, University of Delhi, Kalkaji, New Delhi 110019, India
- Correspondence: (A.C.); (I.K.S.)
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Bozorov TA, Toshmatov ZO, Kahar G, Zhang D, Shao H, Gafforov Y. Wild Apple-Associated Fungi and Bacteria Compete to Colonize the Larval Gut of an Invasive Wood-Borer Agrilus mali in Tianshan Forests. Front Microbiol 2021; 12:743831. [PMID: 34721341 PMCID: PMC8554297 DOI: 10.3389/fmicb.2021.743831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 09/13/2021] [Indexed: 11/13/2022] Open
Abstract
The gut microflora of insects plays important roles throughout their lives. Different foods and geographic locations change gut bacterial communities. The invasive wood-borer Agrilus mali causes extensive mortality of wild apple, Malus sieversii, which is considered a progenitor of all cultivated apples, in Tianshan forests. Recent analysis showed that the gut microbiota of larvae collected from Tianshan forests showed rich bacterial diversity but the absence of fungal species. In this study, we explored the antagonistic ability of the gut bacteria to address this absence of fungi in the larval gut. The results demonstrated that the gut bacteria were able to selectively inhibit wild apple tree-associated fungi. Among them, Pseudomonas synxantha showed strong antagonistic ability, producing antifungal compounds. Using different analytical methods, such as column chromatography, mass spectrometry, HPLC, and NMR, an antifungal compound, phenazine-1-carboxylic acid (PCA), was identified. Activity of the compound was determined by the minimum inhibitory concentration method and electron microscopy. Moreover, our study showed that the gut bacteria could originate from noninfested apple microflora during infestation. Overall, the results showed that in newly invaded locations, A. mali larvae changed their gut microbiota and adopted new gut bacteria that prevented fungal colonization in the gut.
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Affiliation(s)
- Tohir A Bozorov
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.,Laboratory of Molecular Biochemistry and Genetics, Institute of Genetics and Plants Experimental Biology, Academy of Sciences of the Republic of Uzbekistan, Tashkent, Uzbekistan
| | - Zokir O Toshmatov
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.,Laboratory of Molecular Biochemistry and Genetics, Institute of Genetics and Plants Experimental Biology, Academy of Sciences of the Republic of Uzbekistan, Tashkent, Uzbekistan
| | - Gulnaz Kahar
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Daoyuan Zhang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Hua Shao
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Yusufjon Gafforov
- Laboratory of Mycology, Institute of Botany, Academy of Sciences of the Republic of Uzbekistan, Tashkent, Uzbekistan
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22
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Pei B, Wang C, Yu B, Xia D, Li T, Zhou Z. The First Report on the Transovarial Transmission of Microsporidian Nosema bombycis in Lepidopteran Crop Pests Spodoptera litura and Helicoverpa armigera. Microorganisms 2021; 9:microorganisms9071442. [PMID: 34361877 PMCID: PMC8303212 DOI: 10.3390/microorganisms9071442] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/01/2021] [Accepted: 07/02/2021] [Indexed: 11/16/2022] Open
Abstract
Microsporidia are ubiquitous fungi-related parasites infecting nearly all vertebrates and invertebrates. Microsporidian Nosema bombycis is a natural pathogen of multiple insects, including the silkworm and many agricultural and forest pests. N. bombycis can transovarially transmit in silkworm and cause huge economic losses to the sericulture. However, it remains unclear whether N. bombycis vertically transmits in the crop pests Spodoptera litura and Helicoverpa armigera. Here, we investigated the infection of N. bombycis in S. litura and H. armigera to illuminate its infectivity and transovarial transmission. In result, tissue examination with light microscopy revealed that the fat body, midgut, malpighian tubules, hemolymph, testis, and ovary were all infected in both pest pupae. Immunohistochemical analysis (IHA) of the ovariole showed that a large number of parasites in maturation and proliferation presented in follicle cell, nurse cell, and oocyte, suggesting that N. bombycis can infect and multiply in these cells and probably transovarially transmit to the next generations in both pests. Microscopic examination on the egg infection rate demonstrated that 50% and 38% of the S. litura and H. armigera eggs were congenitally infected, respectively. IHA of both eggs manifested numerous spores and proliferative pathogens in the oocyte, confirming that N. bombycis can invade into the female germ cell from the parent body. After hatching of the infected eggs, we detected the infection in offspring larvae and found large quantities of proliferative pathogens, confirming that N. bombycis can transovarially transmit in S. litura and H. armigera, and probably persists in both pest populations via congenital infection. In summary, our work, for the first time, proved that N. bombycis is able to vertically transmit in S. litura and H. armigera via infecting the oocyte in the parent, suggesting that N. bombycis could be a biological insecticide for controlling the population of crop pests.
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Affiliation(s)
- Boyan Pei
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
| | - Chunxia Wang
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
| | - Bin Yu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
| | - Dan Xia
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
| | - Tian Li
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
- Correspondence: (T.L.); (Z.Z.)
| | - Zeyang Zhou
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, China; (B.P.); (C.W.); (B.Y.); (D.X.)
- Chongqing Key Laboratory of Microsporidia Infection and Control, Southwest University, Chongqing 400715, China
- College of Life Science, Chongqing Normal University, Chongqing 400047, China
- Correspondence: (T.L.); (Z.Z.)
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23
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Jiang D, Wu S, Tan M, Wang Q, Zheng L, Yan SC. The high adaptability of Hyphantria cunea larvae to cinnamic acid involves in detoxification, antioxidation and gut microbiota response. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2021; 174:104805. [PMID: 33838706 DOI: 10.1016/j.pestbp.2021.104805] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 12/03/2020] [Accepted: 02/21/2021] [Indexed: 06/12/2023]
Abstract
Hyphantria cunea is one of the most destructive invasive agricultural and forest pests worldwide. In order to better understand the adaptation mechanism of H. cunea larvae to secondary metabolites of their highly diversified host plants, the physiological function and detoxification ability of midgut, as well as the gut microbial community were investigated in H. cunea larvae fed with cinnamic acid-treated artificial diets. Our results showed that cinnamic acid treatment could not affect the growth and food utilization of H. cunea larvae, as evidenced by a non-significantly altered larval body weight and efficiency of conversion of ingested food. Evaluation of oxidative stress-related parameters (e.g. malondialdehyde and hydrogen peroxide) and midgut histopathology also clearly confirmed that cinnamic acid treatment caused no significant oxidative damage and pathological changes in the larval midgut. Variance analysis showed that cinnamic acid treatment significantly increased the content of non-enzymatic antioxidants (ascorbic acid and glutathione), the activity of antioxidant enzymes (superoxide dismutase and peroxidase) and detoxification enzyme (carboxylate esterase), as well as the abundance of several gut microbiota at the genus level (Hydrogenophaga and Acinetobacter) involved in the organic substance degradation in larval midgut. Further Pearson's correlation analysis revealed that these strongly altered gut microbiota at the genus level appeared to be significantly correlated with the detoxification and antioxidation parameters. These findings demonstrate the high adaptability of H. cunea larvae to cinnamic acid involves in detoxification, antioxidation and gut microbiota response, and indicate the existence of an extremely effective counter-defense mechanism for H. cunea larvae against the secondary metabolites of host plants.
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Affiliation(s)
- Dun Jiang
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China
| | - Shuai Wu
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China
| | - Mingtao Tan
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China
| | - Qing Wang
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China
| | - Lin Zheng
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China
| | - Shan-Chun Yan
- School of Forestry, Northeast Forestry University, Harbin 150040, PR China; Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, PR China.
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Abstract
In nature, insects face a constant threat of infection by numerous exogeneous viruses, and their intestinal tracts are the predominant ports of entry. Insects can acquire these viruses orally during either blood feeding by hematophagous insects or sap sucking and foliage feeding by insect herbivores. However, the insect intestinal tract forms several physical and immunological barriers to defend against viral invasion, including cell intrinsic antiviral immunity, the peritrophic matrix and the mucin layer, and local symbiotic microorganisms. Whether an infection can be successfully established in the intestinal tract depends on the complex interactions between viruses and those barriers. In this review, we summarize recent progress on virus-intestinal tract interplay in insects, in which various underlying mechanisms derived from nutritional status, dynamics of symbiotic microorganisms, and virus-encoded components play intricate roles in the regulation of virus invasion in the intestinal tract, either directly or indirectly. Expected final online publication date for the Annual Review of Virology, Volume 8 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Enhao Ma
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China;
| | - Yibin Zhu
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China; .,Institute of Infectious Diseases, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518000, China.,Institute of Pathogenic Organisms, Shenzhen Center for Disease Control and Prevention, Shenzhen, Guangdong 518055, China
| | - Ziwen Liu
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China;
| | - Taiyun Wei
- Vector-Borne Virus Research Center, Fujian Province Key Laboratory of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Penghua Wang
- Department of Immunology, School of Medicine, University of Connecticut Health Center, Farmington, Connecticut 06030, USA
| | - Gong Cheng
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing 100084, China; .,Institute of Infectious Diseases, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518000, China.,Institute of Pathogenic Organisms, Shenzhen Center for Disease Control and Prevention, Shenzhen, Guangdong 518055, China
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25
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Gong Q, Cao LJ, Sun LN, Chen JC, Gong YJ, Pu DQ, Huang Q, Hoffmann AA, Wei SJ. Similar Gut Bacterial Microbiota in Two Fruit-Feeding Moth Pests Collected from Different Host Species and Locations. INSECTS 2020; 11:insects11120840. [PMID: 33260684 PMCID: PMC7759971 DOI: 10.3390/insects11120840] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 11/20/2020] [Accepted: 11/26/2020] [Indexed: 02/06/2023]
Abstract
Simple Summary The peach fruit moth, Carposina sasakii, and the oriental fruit moth, Grapholita molesta are two co-occurring pests in orchards. Larvae of both species bore into fruits and cause damage to fruit production. Understanding the gut microbes, as well as the influencing factors between these co-occurring pests, may provide insight into their occurrence and control. In this study, we found that the two pests shared many bacteria in their gut from the genera Pseudomonas, Gluconobacter, Acetobacter, and Pantoea. The composition of the gut microbiota is similar between the two species collected from the same host plant and orchard; however, the gut microbiota of individuals collected from different orchards of the same host plant can be different within pest species. These results show that the two fruit moth pests have similar gut bacteria and varied environment in orchards can influence their gut microbiota. Abstract Numerous gut microbes are associated with insects, but their composition remains largely unknown for many insect groups, along with factors influencing their composition. Here, we compared gut bacterial microbiota of two co-occurring agricultural pests, the peach fruit moth (PFM), Carposina sasakii, and the oriental fruit moth (OFM), Grapholita molesta, collected from different orchards and host plant species. Gut microbiota of both species was mainly composed of bacteria from Proteobacteria, followed by Firmicutes. The two species shared bacteria from the genera Pseudomonas, Gluconobacter, Acetobacter, and Pantoea. When we compared two pairs of PFM and OFM populations collected from the same host species and the same orchard, there is no difference in alpha and beta diversity in gut microbiota. When we compared gut microbiota of the same species and host plant from different orchards, alpha and beta diversity was different in populations of PFM collected from two pear orchards but not in other comparisons. Our study suggests that the two pests share many features of gut microbiota and environment in orchards is a main factor influencing their gut microbiota.
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Affiliation(s)
- Qiang Gong
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China;
- College of Forestry, Sichuan Agricultural University, Wenjiang 611130, China;
| | - Li-Jun Cao
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
| | - Li-Na Sun
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
- Department of Forestry Protection, Beijing Forestry University, Beijing 100083, China
| | - Jin-Cui Chen
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
| | - Ya-Jun Gong
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
| | - De-Qiang Pu
- Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China;
| | - Qiong Huang
- College of Forestry, Sichuan Agricultural University, Wenjiang 611130, China;
| | - Ary Anthony Hoffmann
- Pest and Environmental Adaptation Research Group, School of BioSciences, Bio21 Institute, University of Melbourne, Parkville, Victoria 3052, Australia;
| | - Shu-Jun Wei
- Institute of Plant and Environmental Protection, Beijing Academy of Agricultural and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing 100097, China; (Q.G.); (L.-J.C.); (L.-N.S.); (J.-C.C.); (Y.-J.G.)
- Correspondence: ; Tel.: +86-1051503439
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26
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Insects' potential: Understanding the functional role of their gut microbiome. J Pharm Biomed Anal 2020; 194:113787. [PMID: 33272789 DOI: 10.1016/j.jpba.2020.113787] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 11/13/2020] [Accepted: 11/17/2020] [Indexed: 12/17/2022]
Abstract
The study of insect-associated microbial communities is a field of great importance in agriculture, principally because of the role insects play as pests. In addition, there is a recent focus on the potential of the insect gut microbiome in areas such as biotechnology, given some microorganisms produce molecules with biotechnological and industrial applications, and also in biomedicine, since some bacteria and fungi are a reservoir of antibiotic resistance genes (ARGs). To date, most studies aiming to characterize the role of the gut microbiome of insects have been based on high-throughput sequencing of the 16S rRNA gene and/or metagenomics. However, recently functional approaches such as metatranscriptomics, metaproteomics and metabolomics have also been employed. Besides providing knowledge about the taxonomic distribution of microbial populations, these techniques also reveal their functional and metabolic capabilities. This information is essential to gain a better understanding of the role played by microbes comprising the microbial communities in their hosts, as well as to indicate their possible exploitation. This review provides an overview of how far we have come in characterizing insect gut functionality through omics, as well as the challenges and future perspectives in this field.
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27
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Shelomi M, Chen MJ. Culturing-Enriched Metabarcoding Analysis of the Oryctes rhinoceros Gut Microbiome. INSECTS 2020; 11:insects11110782. [PMID: 33187223 PMCID: PMC7696363 DOI: 10.3390/insects11110782] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 11/05/2020] [Accepted: 11/09/2020] [Indexed: 11/16/2022]
Abstract
Simple Summary The coconut rhinoceros beetle is a pest of palm trees, which may have symbiotic gut microbes that help it digest its food. These microbes may produce enzymes like cellulase, which have uses in human industry. If the microbes are essential for the beetle’s survival, then finding ways to attack the microbes could help fight the pest. We sampled microbes from the guts of larval beetles collected in coconut trees in southern Taiwan, and identified the microbes both by culturing and with molecular biology methods. We found several species of bacteria and a yeast, Candida xylanolytica, with potential digestive functions for the beetle. Some of these microbes had been reported in these beetles before while others are new. Broader surveys of the beetle microbiome are needed to determine whether or not they have a conserved microbiome. Abstract Wood-feeding insects should have a source of enzymes like cellulases to digest their food. These enzymes can be produced by the insect, or by microbes living in the wood and/or inside the insect gut. The coconut rhinoceros beetle, Oryctes rhinoceros, is a pest whose digestive microbes are of considerable interest. This study describes the compartments of the O. rhinoceros gut and compares their microbiomes using culturing-enriched metabarcoding. Beetle larvae were collected from a coconut grove in southern Taiwan. Gut contents from the midgut and hindgut were plated on nutrient agar and selective carboxymethylcellulose agar plates. DNA was extracted from gut and fat body samples and 16S rDNA metabarcoding performed to identify unculturable bacteria. Cellulase activity tests were performed on gut fluids and microbe isolates. The midgut and hindgut both showed cellulolytic activity. Bacillus cereus, Citrobacter koseri, and the cellulolytic fungus Candida xylanilytica were cultured from both gut sections in most larvae. Metabarcoding did not find Bacillus cereus, and found that either Citrobacter koseri or Paracoccus sp. were the dominant gut microbes in any given larva. No significant differences were found between midgut and hindgut microbiomes. Bacillus cereus and Citrobacter koseri are common animal gut microbes frequently found in Oryctes rhinoceros studies while Candida xylanilytica and the uncultured Paracoccus sp. had not been identified in this insect before. Some or all of these may well have digestive functions for the beetle, and are most likely acquired from the diet, meaning they may be transient commensalists rather than obligate mutualists. Broader collection efforts and tests with antibiotics will resolve ambiguities in the beetle–microbe interactions.
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Affiliation(s)
- Matan Shelomi
- Department of Entomology, National Taiwan University; Taipei City 10617, Taiwan
- Correspondence: ; Tel.: +886-02-3366-5588
| | - Ming-Ju Chen
- Department of Animal Science and Technology, National Taiwan University, Taipei City 10673, Taiwan;
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28
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Chen B, Zhang N, Xie S, Zhang X, He J, Muhammad A, Sun C, Lu X, Shao Y. Gut bacteria of the silkworm Bombyx mori facilitate host resistance against the toxic effects of organophosphate insecticides. ENVIRONMENT INTERNATIONAL 2020; 143:105886. [PMID: 32623217 DOI: 10.1016/j.envint.2020.105886] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 05/27/2020] [Accepted: 06/09/2020] [Indexed: 05/26/2023]
Abstract
Organophosphate insecticides that are heavily used in agriculture for pest control have caused growing environmental problems and public health concerns worldwide. Ironically, insecticide resistance develops quickly in major lepidopteran pests, partially via their microbial symbionts. To investigate the possible mechanisms by which the microbiota confers insecticide resistance to Lepidoptera, the model organism silkworm Bombyx mori (Lepidoptera: Bombycidae) was fed different antibiotics to induce gut dysbiosis (microbiota imbalance). Larvae treated with polymyxin showed a significantly lower survival rate when exposed to chlorpyrifos. Through high-throughput sequencing, we found that the abundances of Stenotrophomonas and Enterococcus spp. changed substantially after treatment. To assess the roles played by these two groups of bacteria in chlorpyrifos resistance, a germ-free (GF) silkworm rearing protocol was established to avoid the influence of natural microbiota and antibiotics. Monoassociation of GF silkworms with Stenotrophomonas enhanced host resistance to chlorpyrifos, but not in Enterococcus-fed larvae, consistent with larval detoxification activity. GC-μECD detection of chlorpyrifos residues in feces indicated that neither Stenotrophomonas nor Enterococcus degraded chlorpyrifos directly in the gut. However, gut metabolomics analysis revealed a highly species-specific pattern, with higher levels of essential amino acid produced in the gut of silkworm larvae monoassociated with Stenotrophomonas. This critical nutrient provisioning significantly increased host fitness and thereby allowed larvae to circumvent the deleterious effects of these toxic chemicals more efficiently. Altogether, our study not only suggests a new mechanism for insecticide resistance in notorious lepidopteran pests but also provides a useful template for investigating the interplay between host and gut bacteria in complex environmental systems.
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Affiliation(s)
- Bosheng Chen
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Nan Zhang
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Sen Xie
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Xiancui Zhang
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Jintao He
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Abrar Muhammad
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Chao Sun
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Xingmeng Lu
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Yongqi Shao
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China; Key Laboratory for Molecular Animal Nutrition, Ministry of Education, China.
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Larvae of the Clothing Moth Tineola bisselliella Maintain Gut Bacteria that Secrete Enzyme Cocktails to Facilitate the Digestion of Keratin. Microorganisms 2020; 8:microorganisms8091415. [PMID: 32937935 PMCID: PMC7563610 DOI: 10.3390/microorganisms8091415] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 09/05/2020] [Accepted: 09/10/2020] [Indexed: 11/16/2022] Open
Abstract
The evolutionary success of insects is promoted by their association with beneficial microbes that enable the utilization of unusual diets. The synanthropic clothing moth Tineola bisselliella provides an intriguing example of this phenomenon. The caterpillars of this species have adapted to feed on keratin-rich diets such as feathers and wool, which cannot be digested by most other animals and are resistant to common digestive enzymes. Inspired by the hypothesis that this ability may be conferred by symbiotic microbes, we utilized a simple assay to detect keratinase activity and a method to screen gut bacteria for candidate enzymes, which were isolated from feather-fed larvae. The isolation of DNA from keratin-degrading bacterial strains followed by de novo genome sequencing resulted in the identification of a novel bacterial strain related to Bacillus sp. FDAARGOS_235. Genome annotation identified 20 genes with keratinase domains. Proteomic analysis of the culture supernatant from this gut bacterium grown in non-nutrient buffer supplemented with feathers revealed several candidate enzymes potentially responsible for keratin degradation, including a thiol-disulfide oxidoreductase and multiple proteases. Our results suggest that the unusual diet of T. bisselliella larvae promotes their association with keratinolytic microorganisms and that the ability of larvae to feed on keratin can at least partially be attributed to bacteria that produce a cocktail of keratin-degrading enzymes.
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30
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Zhang ZY, Ali MW, Saqib HSA, Liu SX, Yang X, Li Q, Zhang H. A Shift Pattern of Bacterial Communities Across the Life Stages of the Citrus Red Mite, Panonychus citri. Front Microbiol 2020; 11:1620. [PMID: 32754145 PMCID: PMC7366552 DOI: 10.3389/fmicb.2020.01620] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 06/22/2020] [Indexed: 02/01/2023] Open
Abstract
As one of the most detrimental citrus pests worldwide, the citrus red mite, Panonychus citri (McGregor), shows extraordinary fecundity, polyphagia, and acaricide resistance, which may be influenced by microbes as other arthropod pests. However, the community structure and physiological function of microbes in P. citri are still largely unknown. Here, the high-throughput sequencing of 16S rDNA amplicons was employed to identify and compare the profile of bacterial communities across the larva, protonymph, deutonymph, and adult stages of P. citri. We observed a dominance of phylums Proteobacteria and Firmicutes, and classes α-, γ-, β-Proteobacteria and Bacilli in the bacterial communities across the host lifespan. Based on the dynamic analysis of the bacterial community structure, a significant shift pattern between the immature (larva, protonymph, and deutonymph) and adult stages was observed. Accordingly, among the major families (and corresponding genera), although the relative abundances of Pseudomonadaceae (Pseudomonas), Moraxellaceae (Acinetobacter), and Sphingobacteriaceae (Sphingobacterium) were consistent in larva to deutonymph stages, they were significantly increased to 30.18 ± 8.76% (30.16 ± 8.75%), 20.78 ± 10.86% (18.80 ± 10.84%), and 11.71 ± 5.49% (11.68 ± 5.48%), respectively, in adult stage, which implied the important function of these bacteria on the adults' physiology. Actually, the functional prediction of bacterial communities and Spearman correlation analysis further confirm that these bacteria had positively correlations with the pathway of "lipid metabolism" (including eight sublevel pathways) and "metabolism of cofactors and vitamins" (including five sublevel pathways), which all only increased in adult stages. In addition, the bacterial communities were eliminated by using broad-spectrum antibiotics, streptomycin, which significantly suppressed the survival and oviposition of P. citri. Overall, we not only confirmed the physiological effects of bacteria community on the vitality and fecundity of adult hosts, but also revealed the shift pattern of bacterial community structures across the life stages and demonstrated the co-enhancements of specific bacterial groups and bacterial functions in nutritional metabolism in P. citri. This study sheds light on basic information about the mutualism between spider mites and bacteria, which may be useful in shaping the next generation of control strategies for spider mite pests, especially P. citri.
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Affiliation(s)
- Zhen-Yu Zhang
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Horticultural Plant Biology (MOE), Institute of Urban and Horticultural Entomology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Muhammad Waqar Ali
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Hafiz Sohaib Ahmed Saqib
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Sheng-Xuan Liu
- College of Life Science, Yangtze University, Jingzhou, China
| | - Xin Yang
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Horticultural Plant Biology (MOE), Institute of Urban and Horticultural Entomology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Qin Li
- College of Life Science, Yangtze University, Jingzhou, China
| | - Hongyu Zhang
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Horticultural Plant Biology (MOE), Institute of Urban and Horticultural Entomology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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Martínez-Solís M, Collado MC, Herrero S. Influence of Diet, Sex, and Viral Infections on the Gut Microbiota Composition of Spodoptera exigua Caterpillars. Front Microbiol 2020; 11:753. [PMID: 32435237 PMCID: PMC7218101 DOI: 10.3389/fmicb.2020.00753] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Accepted: 03/30/2020] [Indexed: 11/25/2022] Open
Abstract
The gut microbiota plays essential roles in processes related with metabolism, physiology, and immunity in all organisms, including insects. In the present work, we performed a broad analysis of the Spodoptera exigua gut microbiota, a major agricultural pest. We analyzed the influence of multiple parameters such as diet, geographic location, sex, or viral infections on S. exigua caterpillar gut microbiota composition. Our study revealed a high variability in bacterial composition among individuals, and a major influence of environmental bacteria (including those acquired through diet) on the gut microbiota composition, supporting previous studies that claim resident microbiota are lacking in caterpillars. Previous studies with laboratory-reared insects showed that changes in caterpillar gut bacterial composition affect the insecticidal properties of entomopathogenic viruses and bacteria. Our study revealed different microbiota composition in field insects carrying a natural viral infection with Spodoptera exigua nucleopolyhedrovirus (SeMNPV) and/or Spodoptera exigua iflavirus 1 (SeIV1). Few taxa can be specifically associated with the infection, suggesting microbiota influence the infective process of these natural pathogens, and providing new strategies for insect pest management.
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Affiliation(s)
- María Martínez-Solís
- Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI BIOTECMED), Departamento de Genética, Universitat de València, Valencia, Spain
| | - María Carmen Collado
- Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas (IATA-CSIC), Valencia, Spain
| | - Salvador Herrero
- Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI BIOTECMED), Departamento de Genética, Universitat de València, Valencia, Spain
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Yin C, Sun P, Yu X, Wang P, Cheng G. Roles of Symbiotic Microorganisms in Arboviral Infection of Arthropod Vectors. Trends Parasitol 2020; 36:607-615. [PMID: 32386795 DOI: 10.1016/j.pt.2020.04.009] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 04/10/2020] [Accepted: 04/10/2020] [Indexed: 12/30/2022]
Abstract
Arthropod vectors serve as native reservoirs and transmitters of hundreds of arboviruses. In arthropod vectors, symbiotic microorganisms residing in the gut lumen and/or hemocoelic tissues maintain complicated relationships with their host and influence multiple aspects of vector physiology. Recently, accumulating evidence has established an important role for symbiotic microorganisms in vector-virus interactions which could potentially be used to control viral transmission. Herein, we review recent progress on symbiotic microbe-arbovirus interactions and summarize the molecular mechanisms by which commensal microbes act on hosts and arboviruses. Understanding the sophisticated interactions among arthropod vectors, microbiota, and arboviruses may offer new strategies for the prevention of arboviral diseases in the future.
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Affiliation(s)
- Chunhong Yin
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing, China, 100084; Institute of Pathogenic Organisms, Shenzhen Center for Disease Control and Prevention, Shenzhen, Guangdong, China, 518055
| | - Peng Sun
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing, China, 100084; Institute of Pathogenic Organisms, Shenzhen Center for Disease Control and Prevention, Shenzhen, Guangdong, China, 518055
| | - Xi Yu
- School of Life Sciences, Tsinghua University, Beijing, China, 100084
| | - Penghua Wang
- Department of Immunology, School of Medicine, the University of Connecticut Health Center, Farmington, CT, USA, 06030
| | - Gong Cheng
- Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing, China, 100084; Institute of Pathogenic Organisms, Shenzhen Center for Disease Control and Prevention, Shenzhen, Guangdong, China, 518055.
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González-Serrano F, Pérez-Cobas AE, Rosas T, Baixeras J, Latorre A, Moya A. The Gut Microbiota Composition of the Moth Brithys crini Reflects Insect Metamorphosis. MICROBIAL ECOLOGY 2020; 79:960-970. [PMID: 31796995 DOI: 10.1007/s00248-019-01460-1] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 11/04/2019] [Indexed: 02/07/2023]
Abstract
Lepidoptera is a highly diverse insect order with major importance in agriculture as many species are considered pests. The role of the gut microbiota in insect physiology is still poorly understood, despite the research undertaken in recent years. Furthermore, Lepidoptera are holometabolous insects and few studies have addressed the influence of the changes taking place on the gut microbiome composition and diversity during metamorphosis, especially in monophagous species. The V3-V4 region of the 16S rRNA gene was sequenced to investigate the microbiota composition and diversity of the monophagous moth Brithys crini during three different life stages: egg, larvae (midgut and hindgut), and adult (gut). Our results showed that the microbiota composition of B. crini was stage specific, indicating that the developmental stage is a main factor affecting the gut microbiome in composition and potential functions. Moreover, the diversity of the gut microbiome reflected the developmental process, since a drop in diversity occurred between the larval and the adult phase, when the intestine is completely renewed. In spite of the changes in the gut microbiota during metamorphosis, 29 genera were conserved throughout the three developmental stages, mainly belonging to the Proteobacteria phylum, which define the core microbiome of B. crini. These genera seem to contribute to host physiology by participating in food digestion, nutrition, and detoxification mechanisms.
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Affiliation(s)
- Francisco González-Serrano
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
- Institute for Integrative Systems Biology, University of València and Consejo Superior de Investigaciones Científicas, València, Spain
| | - Ana Elena Pérez-Cobas
- Institut Pasteur and Biologie des Bactéries Intracellulaires, Paris, France
- CNRS UMR 3525, 75724, Paris, France
| | - Tania Rosas
- Institute for Integrative Systems Biology, University of València and Consejo Superior de Investigaciones Científicas, València, Spain
| | - Joaquín Baixeras
- Instituto Cavanilles de Biodiversidad y Biología Evolutiva, University of València, València, Spain
| | - Amparo Latorre
- Institute for Integrative Systems Biology, University of València and Consejo Superior de Investigaciones Científicas, València, Spain
- Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad València, (FISABIO), València, Spain
- CIBER en Epidemiología y Salud Pública (CIBEResp), Madrid, Spain
| | - Andrés Moya
- Institute for Integrative Systems Biology, University of València and Consejo Superior de Investigaciones Científicas, València, Spain.
- Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad València, (FISABIO), València, Spain.
- CIBER en Epidemiología y Salud Pública (CIBEResp), Madrid, Spain.
- Integrative Systems Biology Institute (I2Sysbio) University of València and Spanish Research Council (CSIC). c/ Catedrático Agustín Escardino Benlloch 9, 46980, Paterna, València, Spain.
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Chen B, Xie S, Zhang X, Zhang N, Feng H, Sun C, Lu X, Shao Y. Gut microbiota metabolic potential correlates with body size between mulberry-feeding lepidopteran pest species. PEST MANAGEMENT SCIENCE 2020; 76:1313-1323. [PMID: 31603616 DOI: 10.1002/ps.5642] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 09/25/2019] [Accepted: 10/05/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND Many insect pests rely on microbial symbionts to obtain nutrients or for defence, thereby allowing them to exploit novel food sources and degrade environmental xenobiotics, including pesticides. Although Lepidoptera is one of the most diverse insect taxa and includes important agricultural pests, lepidopteran microbiotas, particularly functional traits, have not been studied widely. Here, we provide a comprehensive characterization of the gut microbiota across multiple mulberry-feeding lepidopteran species, resolving both community structure and metabolic potential. RESULTS Our results indicate abundant bacteria inside the gut of larval Lepidoptera. However, even though they were fed the same diet, the structures of the bacterial communities differed in four major mulberry pest species, suggesting host-specific effects on microbial associations. Community-level metabolic reconstructions further showed that although taxonomic composition varied greatly, carbohydrate and amino acid metabolism and membrane transporter were key functional capabilities of the gut bacteria in all samples, which may play basic roles in the larval gut. In addition, principal coordinate analysis (PCoA) of gut bacterial-predicted gene ontologies revealed specialized features of the microbiota associated with these mulberry pests, which were divided into two distinct clusters (macrolepidopterans and microlepidopterans). This pattern became even more prominent when further Lepidoptera species were involved. CONCLUSIONS A suite of gut microbiota metabolic functions significantly correlated with larval size; the metabolism of terpenoids and polyketides, xenobiotics biodegradation and metabolism were specifically enriched in large species, while small larvae had enhanced nucleotide metabolism. Our report paves the way for uncovering the correlation between host phenotype and microbial symbiosis in this notorious insect pest group. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Bosheng Chen
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Sen Xie
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Xiancui Zhang
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Nan Zhang
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Huihui Feng
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Chao Sun
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Xingmeng Lu
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Yongqi Shao
- Max Planck Partner Group, Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
- Key Laboratory for Molecular Animal Nutrition, Ministry of Education, Hangzhou, China
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Liu Y, Shen Z, Yu J, Li Z, Liu X, Xu H. Comparison of gut bacterial communities and their associations with host diets in four fruit borers. PEST MANAGEMENT SCIENCE 2020; 76:1353-1362. [PMID: 31605420 DOI: 10.1002/ps.5646] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 10/03/2019] [Accepted: 10/09/2019] [Indexed: 05/26/2023]
Abstract
BACKGROUND Microbiota that live in the gut of insects have a wide range of effects on host nutrition, physiology, and behavior. They may shape the adaptation of their hosts to different habitats and lifestyles. To characterize the gut microbiota of fruit borers comprehensively, we compared bacterial communities among Grapholita molesta, Conogethes punctiferalis, Carposina sasakii, and Cydia pomonella, which are serious lepidopteran pests. We selected G. molesta as a representative pest to more explicitly test the influence of host dietary niche on the insect gut microbiome, and compared the bacterial microbial communities of G. molesta fed different diets (peach shoots and apple) using Illumina high-throughput sequencing technology. RESULTS The results show that Proteobacteria and Firmicutes are dominant in their gut microbiota. The C. sasakii had the highest richness values and G. molesta (shoot-feeding) had the highest diversity, whereas C. pomonella and G. molesta (fruit-feeding) had the lowest bacterial richness and diversity, respectively. The ANOSIM analysis revealed significant differences in the structure of gut microbiota among different insects. In addition, G. molesta with a different feeding diet had significant differences in gut microbiota composition. PICRUSt analysis indicated that most functional prediction categories were related to metabolism. CONCLUSION Our results show that gut microbiota composition is affected significantly not only by host species but also host diets. An enhanced understanding of these herbivore-associated microbial symbionts is essential for understanding the biology and ecology of the host insect, and may offer new possibilities to improve integrated pest-management strategies for efficient control of fruit borers. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Yanjun Liu
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
| | - Zhongjian Shen
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
| | - Jianmei Yu
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
| | - Zhen Li
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
| | - Xiaoxia Liu
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
| | - Huanli Xu
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China
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Affiliation(s)
- Letian Xu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Yipeng Liu
- Institute of Physical Science and Information Technology, Anhui University, Hefei, China.,State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Shijing Xu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Min Lu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.,State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
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Analysis of the bacterial communities and endosymbionts of natural populations of Bemisia tabaci in several crop fields from Mexico semi-arid zone. ANN MICROBIOL 2019. [DOI: 10.1007/s13213-019-01483-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
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38
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Chen B, Yu T, Xie S, Du K, Liang X, Lan Y, Sun C, Lu X, Shao Y. Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome. Sci Data 2018; 5:180285. [PMID: 30532085 PMCID: PMC6289112 DOI: 10.1038/sdata.2018.285] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 10/25/2018] [Indexed: 11/09/2022] Open
Abstract
Lepidoptera (butterflies and moths) is a major insect order including important pollinators and agricultural pests, however their microbiomes are little studied. Here, using next-generation sequencing (NGS)-based shotgun metagenomics, we characterize both the biodiversity and functional potential of gut microbiota of a lepidopteran model insect, the silkworm Bombyx mori. Two metagenomes, including the standard inbred strain Dazao (P50) and an improved hybrid strain Qiufeng × Baiyu (QB) widely used in commercial silk production, were generated, containing 45,505,084 and 69,127,002 raw reads, respectively. Taxonomic analysis revealed that a total of 663 bacterial species were identified in P50 silkworms, while 322 unique species in QB silkworms. Notably, Enterobacter, Acinetobacter and Enterococcus were dominated in both strains. The further functional annotation was performed by both BlastP and MG-RAST against various databases including Nr, COG, KEGG, CAZy and SignalP, which revealed >5 × 106 protein-coding genes. These datasets not only provide first insights into all bacterial genes in silkworm guts, but also help to generate hypotheses for subsequently testing functional traits of gut microbiota in an important insect group.
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Affiliation(s)
- Bosheng Chen
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Ting Yu
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Sen Xie
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Kaiqian Du
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Xili Liang
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Yahua Lan
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Chao Sun
- Analysis Centre of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Xingmeng Lu
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China
| | - Yongqi Shao
- Institute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.,Key Laboratory for Molecular Animal Nutrition, Ministry of Education, Beijing, China
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Kaczmarczyk A, Kucharczyk H, Kucharczyk M, Kapusta P, Sell J, Zielińska S. First insight into microbiome profile of fungivorous thrips Hoplothrips carpathicus (Insecta: Thysanoptera) at different developmental stages: molecular evidence of Wolbachia endosymbiosis. Sci Rep 2018; 8:14376. [PMID: 30258200 PMCID: PMC6158184 DOI: 10.1038/s41598-018-32747-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2018] [Accepted: 09/12/2018] [Indexed: 12/26/2022] Open
Abstract
Insects' exoskeleton, gut, hemocoel, and cells are colonized by various microorganisms that often play important roles in their host life. Moreover, insects are frequently infected by vertically transmitted symbionts that can manipulate their reproduction. The aims of this study were the characterization of bacterial communities of four developmental stages of the fungivorous species Hoplothrips carpathicus (Thysanoptera: Phlaeothripidae), verification of the presence of Wolbachia, in silico prediction of metabolic potentials of the microorganisms, and sequencing its mitochondrial COI barcode. Taxonomy-based analysis indicated that the bacterial community of H. carpathicus contained 21 bacterial phyla. The most abundant phyla were Proteobacteria, Actinobacteria, Bacterioidetes and Firmicutes, and the most abundant classes were Alphaproteobacteria, Actinobacteria, Gammaproteobacteria and Betaproteobacteria, with different proportions in the total share. For pupa and imago (adult) the most abundant genus was Wolbachia, which comprised 69.95% and 56.11% of total bacterial population respectively. Moreover, similarity analysis of bacterial communities showed that changes in microbiome composition are congruent with the successive stages of H. carpathicus development. PICRUSt analysis predicted that each bacterial community should be rich in genes involved in membrane transport, amino acid metabolism, carbohydrate metabolism, replication and repair processes.
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Affiliation(s)
- Agnieszka Kaczmarczyk
- Department of Genetics and Biosystematics, Faculty of Biology, University of Gdansk, Wita Stwosza 59, 80-308, Gdansk, Poland.
| | - Halina Kucharczyk
- Department of Zoology, Maria Curie-Sklodowska University, Akademicka 19, 20-033, Lublin, Poland
| | - Marek Kucharczyk
- Department of Nature Protection, Maria Curie-Sklodowska University, Akademicka 19, 20-033, Lublin, Poland
| | - Przemysław Kapusta
- Center for Medical Genomics - OMICRON, Jagiellonian University Medical College, Kopernika 7c, 31-034, Kraków, Poland
| | - Jerzy Sell
- Department of Genetics and Biosystematics, Faculty of Biology, University of Gdansk, Wita Stwosza 59, 80-308, Gdansk, Poland
| | - Sylwia Zielińska
- Department of Bacterial Molecular Genetics, Faculty of Biology, University of Gdansk, Wita Stwosza 59, 80-308, Gdansk, Poland
- Phage Consultants, Partyzantow 10/18, 80-254, Gdansk, Poland
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