Is the Hyporheic Zone Relevant beyond the Scientific Community?

Untargeted, tandem mass spectrometry metaproteome of Columbia River sediments

Rivers are critical ecosystems that impact global biogeochemical cycles. Nonetheless, a mechanistic understanding of river microbial metabolisms and their influences on geochemistry is lacking. Here, we announce metaproteomes of river sediments that are paired with metagenomes and metabolites, enabling an understanding of the microbial underpinnings of river respiration.

Different intensities and directions of hyporheic water exchange in habitats of aquatic Ranunculus species in rivers-a case study in Poland

Hyporheic water exchange driven by groundwater-surface water interactions constitutes habitat conditions for aquatic biota. In our study, we conducted a field-research-based analysis of hyporheic water exchange to reveal whether the hyporheic water exchange differentiates particular Ranunculus sp. habitats. We measured the density of the stream of upwelling and hydraulic gradients of water residing in the hyporheic zone in 19 Polish rivers. We revealed that R. peltatus and R. penicillatus persist in habitats of considerably higher hyporheic water exchange upwelling flux (respectively 0.0852 m3∙d-1∙m-2 and 0.0952 m3∙d-1∙m-2) than R. circinatus, R. fluitans, and a hybrid of R. circinatus × R. fluitans (respectively m3∙d-1∙m-2; 0.0222 m3∙d-1∙m-2 and 0.0717 m3∙d-1∙m-2). The presented results can be used to indicate aquatic habitat suitability in the case of protection and management of ecosystems settled by Ranunculus sp.

Dual stable isotopes to rethink the watershed-scale spatiotemporal interaction between surface water and groundwater

The interaction between groundwater and surface water, including their recharge relationship and ratio, is crucial for water cycling, management, and pollution control. However, accurately estimating their spatiotemporal interaction at the watershed scale remains challenging. In this study, we used dual stable isotopes (δ18O, δ2H, d-excess, and lc-excess) and hydrochemistry methods to rethink spatiotemporal interaction at the Yiluo River watershed in central China. We collected 20 groundwater and 40 surface water samples over four periods in two seasons (dry and wet). Our results showed that in the downstream region, groundwater recharged surface water in the dry season while surface water recharged groundwater in the wet season, with average recharge ratios of 89.82% and 90.02%, respectively. In the midstream region, surface water recharged groundwater in both seasons with average ratios of 93.79% and 91.35%. In contrast, in the upstream region, groundwater recharged surface water in both seasons with ratios of 67.35% and 76.89%. Seasonal changes in the recharge relationship between surface water and groundwater in the downstream region also been found. Our findings provide valuable insights for watershed-scale water resource and pollution management.

Effects of near-bed turbulence on microplastics fate and transport in streams

Quantifying the impact of hyporheic exchange is crucial for understanding the transport and fate of microplastics in streams. In this study, we conducted several Computational Fluid Dynamics (CFD) simulations to investigate near-bed turbulence and analyze vertical hyporheic exchange. Different arranged spheres were used to represent rough and permeable sediment beds in natural rivers. The velocities associated with vertical hyporheic flux and the gravitational force were compared to quantify the susceptibility of microplastics to hyporheic exchange. Four scenario cases representing different channel characteristics were studied and their effects on microplastics movements through hyporheic exchange were quantitatively studied. Results show that hyporheic exchange flow can significantly influence the fate and transport of microplastics of small and light-weighted microplastics. Under certain conditions, hyporheic exchange flow can dominate the behavior of microplastics with sizes up to around 800 μm. This dominance is particularly evident near the sediment-water interface, especially at the top layer of sediments. Higher bed porosity enhances the exchange of microplastics between water and sediment, while increased flow conditions extend the vertical exchange zone into deeper layers of the bed. Changes in the bedform lead to the most pronounced vertical hyporheic exchange, emphasizing the control of morphological features on microplastics transport. Furthermore, it is found that sweep-ejection events are prevailing near the bed surface, serving as a mechanism for microplastics transport in rivers. As moving from the water column to deeper layers in the sediment bed, there's a shift from sweeps dominance to ejections dominance, indicating changes of direction in microplastics movement at different locations.

Effects of 66 years of water management and hydroclimatic change on the urban hydrology and water quality of the Panke catchment, Berlin, Germany

Long-term records of combined stream flow and water chemistry can be an invaluable source of information on changes in the quantity and quality of water resources. To understand the effect of hydroclimate and water management on the heavily urbanized Panke catchment in Berlin, Germany, an extensive search, collation and digitization of historic data from various sources was undertaken. This integrated a unique 66-year spatially distributed record of stream water quality, a 21-year record of groundwater quality and a 31-year stream flow record. These data were analysed in the context of hydroclimatic variability, as well as the history and technological evolution of water resource management in the catchment. To contextualize the effect of droughts, "average" and wet years the Standard Precipitation Index (SPI) was applied. As upstream sites have been less regulated by human impacts, the flow regime is most sensitive to changes in hydroclimatic conditions, while downstream sites are more influenced by wastewater effluents, urban storm drains and inter-basin transfers for flood alleviation. However, at all sites, a general increase in maximum event discharge was observed until a recent drought, starting in 2018. In general, water quality in the catchment has gradually improved as a result of management change and increasingly effective wastewater treatment, though in some places legacy and/or contemporary urban and rural groundwater contamination may be affecting the stream. Hydroclimatic changes, particularly drought years can affect water quality classes, and alter the chemostatic/dynamic behaviour of catchment export patterns. These insights from the Panke catchment underline the importance of strategic adaptation and improvement of water treatment and water resource management in order to enhance the quality of urban water courses. It also demonstrates the importance of long-term integrated data sets.

Benthic sediment as stores and sources of bacteria and viruses in streams: A comparison of baseflow vs. stormflow longitudinal transport and residence times

The presence of bacteria and viruses in freshwater represents a global health risk. The substantial spatial and temporal variability of microbes leads to difficulties in quantifying the risks associated with their presence in freshwater. Fine particles, including bacteria and viruses are transported and accumulated into shallow streambed (i.e., benthic) sediment, delaying the downstream transmission during baseflow conditions but contributing to their resuspension and transport downstream during stormflow events. Direct measurements of pathogen accumulation in benthic sediments are rare. Until now, the dynamic role of benthic sediment as both a store and source of microbes, has not been quantified. In this study, we analyze microbial abundance in benthic sediment along a 1 km reach of an intermittent Mediterranean stream receiving inputs from the effluent of a wastewater treatment plant, a known point source of microbes in streams. We sampled benthic sediment during a summer drought when the wastewater effluent constituted 100 % of the stream flow, and thus, large accumulation and persistence of pathogens along the streambed was expected. We measured the abundance of total bacteria, Escherichia coli (as a fecal indicator), and presence of enteric rotavirus (RoV) and norovirus (NoV). The abundance of E. coli, based on qPCR detection, was high (4.99∙102 gc /cm2) along the first 100 m downstream of the wastewater effluent input and in general decreased with distance from the source, with presence of RoV and NoV along the study reach. A particle tracking model was applied, that uses stream water velocity as an input, and accounts for microbial exchange into, immobilization, degradation, and resuspension out of benthic sediment during baseflow and stormflow. Rates of exchange into benthic sediment were 3 orders of magnitude higher during stormflow, but residence times were proportionately lower, resulting in increased longitudinal connectivity from up to downstream during stormflow. Model simulations demonstrated mechanistically how the rates of exchange into and out of the benthic sediment resulted in benthic sediment to act as a store during baseflow and a source during stormflow.

Flow and Transport Modeling in Heterogeneous Sediments Using an Integral Approach

An integral approach which can simultaneously model turbulent flow and transport at the sediment-water interface has been recently developed and validated for homogeneous sediment which was achieved by comparing numerical results to flume experiments on flow and transport over a rippled streambed and through the sediment for neutral, gaining, and losing conditions. In the present study, we validated the approach for heterogeneous conditions by comparing numerical simulations of flow and transport in heterogeneous sediment to analytical solutions as well as flume experiments on flow and transport through rippled streambed consisting of heterogeneous sediment. For this complex setup, simulation and experimental results agree well showing that flow and tracer transport prefer paths through areas with bigger grain diameters and higher porosities. The effect of flow redirections under losing and gaining conditions on hyporheic flow and residence times is discussed.

Linking denitrification and pesticide transformation potentials with community ecology and groundwater discharge in hyporheic sediments in a lowland stream

Contamination of rivers by nitrate and pesticides poses a risk for aquatic ecosystems in lowland catchments that are often intensively used for agriculture. Here, the hyporheic zone, the streambed underneath the stream, plays a vital role due to its efficient self-purification capacity. The present study aims to evaluate the denitrification and transformation potential of 14 pesticides and three transformation products in the hyporheic sediment from a lowland stream with a high N load and by comparing an agricultural straightened section to a natural meandering part of the stream influenced by different groundwater discharges. Batch experiments were set up to evaluate the denitrification and pesticide transformation potentials in hyporheic sediment from two depths (5-15 cm (a) and 15-25 cm (b)). Our results revealed that (i) differences between the agricultural and natural sections of the river did not influence pollutant attenuation, (ii) both the nitrate and pesticide attenuation processes were more rapid in the upper "a" layer compared to the "b" layer due to higher microbial abundance, (iii) high groundwater discharge reduced the denitrification potential while pesticide transformation was unaffected, (iv) denitrification correlated with denitrifier abundance (nirK) in the "b" layer, while this correlation was not seen in the "a" layer, and (v) a microbial community with low diversity can explain limited transformation for the majority of tested pesticides. Overall, our results suggest that high groundwater discharge zones with reduced residence time in the hyporheic zone can be an important source of pesticides and nitrate to surface water.

South America stygobiont crustaceans: a new species of Hyalellidae (Amphipoda) and new reports of Stygocarididae (Anaspidacea) and Protojaniridae (Isopoda) from Calingasta Valley, Pre-Andean region, San Juan, Argentina

We describe one new eyeless Hyalella species, H. cuyana n. sp., from the hyporheic zone of Calingasta River, San Juan Province, Argentina. Hyalella cuyana n. sp. differs morphologically from its stygobiont congeners by characters of antennae (both antennae subequal in size; aesthetascs elongated); coxal plate 4 (posteriorly without excavation); epimeral plates 1-3 (rounded posterodistally); male gnathopod 2 propodus (almond-shaped, ovate, palm slope strongly oblique); and pleopods (inner ramus reduced to 2-3 articles). We provide a detailed morphological comparison between stygobiont and stygophile Hyalella species. We comment on the sympatry and new report of stygobiont Malacostraca species Parastygocaris andina and Cuyojanira sp. Severe environmental changes and significant decline of habitat quality recorded along the Calingasta River increase the risk of extinction for this vulnerable and endemic fauna. We recommend that the new Hyalella species should be listed as Critically Endangered (CR) in the IUCN categorization according to criteria B1a as it is only known from the type locality; and criteria B1b iii (continuing decline, observed, inferred in the quality of habitat).

Clogging modulates the copper effects on microbial communities of streambed sediments

The hyporheic zone, i.e. the water-saturated sediment beneath and alongside the riverbed, is exposed to multiple stressors. Agricultural-watershed rivers are frequently exposed to two concomitant stressors: clogging and copper contamination. However, one stressor exposure can increase sensitivity to a second stressor. The aim of this study was to experimentally test the cumulative effects of these two stressors on copper distribution and structural and functional microbial communities responses in the hyporheic zone. A slow filtration column experiment was conducted to compare the effects of 3 treatments of increasing complexity: 'Reference', 'Copper-contaminated' (dissolved copper added at 191 µg L^-1), and 'Clogging+Copper' (dissolved copper + addition of 2 cm of fine sediment). Microbial community structure and activities were studied at 4 column sediment depths. The results showed that clogging did not modify the distribution of copper, which remained fixed in the first few centimetres. In the first few centimetres, clogging had a stimulating effect on microbial activities whereas copper had limited effects mainly on leucine aminopeptidase activity and microbial community tolerance to copper. The subsurface zone thus hosts significant different microbial communities from the communities in the deeper zones that were protected from surface stressors. This experiment confirms the valuable filtering role played by the hyporheic zone and shows that microbial responses are strongly correlated to microhabitat-scale physicochemical conditions in sediment.

Metal bioaccumulation in stygophilous amphipod Synurella ambulans in the hyporheic zone: The influence of environmental factors

Given the increasing need to protect vulnerable freshwater ecosystems and make them more resilient to human use and climate change, biomonitoring of the hyporheic zone (HZ), which plays a critical role in pollution attenuation, is essential. The aim of the present study was to assess the potential of the amphipod species Synurella ambulans as a bioindicator of metal contamination in the HZ of the Sava River (Croatia). Amphipods were collected during the four seasons at two sampling sites (average sampling depth 55 cm) differing in type (agricultural and urban) and intensity (diffuse and point source contamination) of anthropogenic influence, one located upstream (Medsave), and the other downstream (Jarun) of the wastewater treatment plant discharge. Concentrations of Al, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Rb, Sn, Zn, Ca, K, Mg and Na were measured in the interstitial water, sediments and specimens of S. ambulans by HR ICP-MS. Physicochemical parameters (temperature, DO, O₂ saturation, pH, conductivity, alkalinity, total water hardness, COD_KMnO4, nutrients) were measured in the interstitial water, while organic carbon was measured in the interstitial water and sediments. Metal concentrations in interstitial water and sediments were below thresholds set by environmental quality standards. Metal concentrations in S. ambulans were classified as follows: higher at the Jarun site (Al, Cr, Fe, Ni, Pb, Sn), higher at the Medsave site (Cd, Cu, Rb) and mostly comparable at both sites (Co, Mn, Zn). Bioaccumulation factors were generally higher at Jarun, with average values ranging from 322 to 143,278 L kg^-1. Bioaccumulation of metals in S. ambulans depended on various environmental factors, with metal exposure level and dissolved macro elements showing the strongest association with metals accumulated in S. ambulans. The findings provided the first evidence on the suitability of S. ambulans as a good bioindicator of chronic metal contamination in the HZ.

Combined Surface-Subsurface Stream Restoration Structures Can Optimize Hyporheic Attenuation of Stream Water Contaminants

There is a design-to-function knowledge gap regarding how engineered stream restoration structures can maximize hyporheic contaminant attenuation. Surface and subsurface structures have each been studied in isolation as techniques to restore hyporheic exchange, but surface-subsurface structures have not been investigated or optimized in an integrated manner. Here, we used a numerical model to systematically evaluate key design variables for combined surface (i.e., weir height and length) and subsurface (i.e., upstream and downstream baffle plate spacing) structures. We also compared performance metrics that place differing emphasis on hyporheic flux versus transit times. We found that surface structures tended to create higher flux, shorter transit time flowpaths, whereas subsurface structures promoted moderate-flux, longer transit time flowpaths. Optimal combined surface-subsurface structures could increase fluxes and transit times simultaneously, thus providing conditions for contaminant attenuation that were many times more effective than surface or subsurface structures alone. All performance metrics were improved by the presence of an upstream plate and the absence of a downstream plate. Increasing the weir length tended to improve all metrics, whereas the optimal weir height varied based on metrics. These findings may improve stream restoration by better aligning specific restoration goals with appropriate performance metrics and hyporheic structure designs.

Environmental and land use controls of microplastic pollution along the gravel-bed Ain River (France) and its "Plastic Valley"

Understanding microplastic particles (MPs) accumulation and transport along rivers represents a major task due to the complexity and heterogeneity of rivers, and their interactions with their wider corridor. The identification of MPs hotspots and their potential sources is especially challenging in coarse-bed rivers transporting a wide range of particle sizes with a high degree of variability in time and space. This research focuses on the gravel-bed Ain River (Rhône River tributary, France) which is managed by means of various dams and also hosts one of the major plastic production centres in Europe (Oyonnax and Bienne Plastic Valleys). In this research, (i) Geographical Information Systems (GIS) were used to locate plastic factories and to characterise the land use of the Ain River watershed. (ii) On the field, sediment samples were extracted from the hyporheic zone (HZ) of mobile gravel bar heads, while hydro-sedimentary settings were measured in order to describe site conditions. Sampling sites were especially established in downwelling areas (i.e. where the surface water entered the hyporheic zone), upstream and downstream of dams and plastic factories. (iii) After density separation and organic matter digestion of sediment, MPs were characterised with a µFTIR device followed by data processing via the siMPle software. This work highlighted the trapping efficiency of alluvial bars for MPs. The highest MPs concentrations were found along the Plastic Valleys (up to 4400 MPs/kg), while the lower river was less contaminated by MPs. After grain-size correction, a significant breakpoint was identified in the area of the main dams, revealing their major influence on MPs distribution. The variability in MPs concentrations and types suggested a local origin for most of MPs. A particular feature was the dominance of polypropylene (PP) which appears as a critical industrial heritage as the studied region is specialised in the manufacturing of hard plastics. Indeed, multivariate analyses also revealed that MPs concentrations and types were mostly driven by the vicinity of plastic factories and urban areas. This relationship between the land use, the presence of dams and MPs characteristics provides key results for the MPs assessment and the improvement of management issues along coarse-bed rivers.

Drivers of functional diversity in the hyporheic zone of a large river

The effects of regional (hydrogeology and geomorphology) and local (sediment and hydrology) characteristics on hyporheic assemblages were studied along a 40-km reach of a large gravel-bed river. Hyporheic water and fauna were sampled at the upstream and downstream positions of 15 large gravel bars. The resulting 30 stations varied in their sediment grain size, stability and direction of river-aquifer exchanges. The study concludes that at the 40-km (sector) scale, the longitudinal distribution of hyporheic fauna was controlled by 1) the hydrogeology of the valley (i.e. gaining vs loosing sectors) that modifies abundance and taxonomic richness of stygobites 2) current channel morphometry of the river (i.e. shape and location of meanders), and 3) historical changes (i.e. river incision) which modify abundance and richness of assemblages. At the local scale, we found that surface grain size and stability of the sediment evaluated by visual observation were poor predictors of hyporheos composition. In contrast, the local hydrology (i.e. downwellings, upwellings, low vertical exchanges) explained a large part of the abundance, taxonomic richness and composition of the hyporheic assemblages. Stations with low vertical exchanges were found poorly colonized, while the upwelling zones were rich in stygobites and downwelling areas harbor abundant and species-rich temporary hyporheos. It was also observed that functional diversity was controlled by the same parameters, with high relative abundances of stygobites in upwelling zones and POM feeders in downwelling zones. The heterogeneity of hydrological patterns, with alternation of upwellings and downwellings may represent the optimal spatial structure for hyporheic biodiversity conservation and resilience in rivers.

Fate of trace organic compounds in the hyporheic zone: Influence of microbial metabolism

The hyporheic zone (HZ) is considered a hydrodynamically-driven bioreactor with significant pollutant removal capacities and can therefore not only improve wholestream water quality but also preserve human and ecosystem health. Microbial metabolism is hypothesized to play a key role in pollutant transformation in hyporheic sediments of natural streams. However, previous work investigating the influence of microbial metabolism on pollutant transformation has been predominantly laboratory studies. The key challenge for field studies is the appropriate determination of net microbial metabolism, i.e. information on the actual exposure times to specific microbial processes in the investigated system. The present study uses reactive fluorescent tracers to determine microbial metabolism and ultimately its influence on pollutant transformation, e.g. for trace organic compounds, in hyporheic sediments under natural conditions. In particular, the reactive fluorescent tracers resazurin and its main transformation product resorufin were used to determine the microbial metabolism of facultative or obligate aerobes. The influence of the derived microbial metabolism on the transformation of 20 trace organic compounds, such as pharmaceuticals, including 3 parent-daughter pairs, was examined. The present findings validate laboratory results on the microbially-mediated transformation of the anticonvulsant gabapentin to its main transformation product gabapentin lactam under natural conditions. All other TrOCs investigated did not show a clear link between TrOC reactivity to the microbial metabolism informed by the resazurin-resorufin-system. Overall, the present study not only demonstrates the use of the fluorescent tracer-system resazurin and resorufin for determining microbial metabolism of facultative or obligate aerobes but also generally highlights the potential of reactive fluorescent tracers to disentangle specific reactive properties and ultimately their influence on the fate of pollutants in natural HZs.

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments

Rivers have a significant role in global carbon and nitrogen cycles, serving as a nexus for nutrient transport between terrestrial and marine ecosystems. Although rivers have a small global surface area, they contribute substantially to worldwide greenhouse gas emissions through microbially mediated processes within the river hyporheic zone. Despite this importance, research linking microbial and viral communities to specific biogeochemical reactions is still nascent in these sediment environments. To survey the metabolic potential and gene expression underpinning carbon and nitrogen biogeochemical cycling in river sediments, we collected an integrated data set of 33 metagenomes, metaproteomes, and paired metabolomes. We reconstructed over 500 microbial metagenome-assembled genomes (MAGs), which we dereplicated into 55 unique, nearly complete medium- and high-quality MAGs spanning 12 bacterial and archaeal phyla. We also reconstructed 2,482 viral genomic contigs, which were dereplicated into 111 viral MAGs (vMAGs) of >10 kb in size. As a result of integrating gene expression data with geochemical and metabolite data, we created a conceptual model that uncovered new roles for microorganisms in organic matter decomposition, carbon sequestration, nitrogen mineralization, nitrification, and denitrification. We show how these metabolic pathways, integrated through shared resource pools of ammonium, carbon dioxide, and inorganic nitrogen, could ultimately contribute to carbon dioxide and nitrous oxide fluxes from hyporheic sediments. Further, by linking viral MAGs to these active microbial hosts, we provide some of the first insights into viral modulation of river sediment carbon and nitrogen cycling. IMPORTANCE Here we created HUM-V (hyporheic uncultured microbial and viral), an annotated microbial and viral MAG catalog that captures strain and functional diversity encoded in these Columbia River sediment samples. Demonstrating its utility, this genomic inventory encompasses multiple representatives of dominant microbial and archaeal phyla reported in other river sediments and provides novel viral MAGs that can putatively infect these. Furthermore, we used HUM-V to recruit gene expression data to decipher the functional activities of these MAGs and reconstruct their active roles in Columbia River sediment biogeochemical cycling. Ultimately, we show the power of MAG-resolved multi-omics to uncover interactions and chemical handoffs in river sediments that shape an intertwined carbon and nitrogen metabolic network. The accessible microbial and viral MAGs in HUM-V will serve as a community resource to further advance more untargeted, activity-based measurements in these, and related, freshwater terrestrial-aquatic ecosystems.

Degradation potential of MCPA, metolachlor and propiconazole in the hyporheic sediments of an agriculturally impacted river

Hyporheic sediments are influenced by physical, biological, and chemical processes due to the interactions with river water and has been shown to play an important role in the environmental fate of pesticides. Therefore, this study evaluated the bacterial degradation potential of MCPA, metolachlor and propiconazole in hyporheic sediments sampled along a 20 km long stretch of an agriculturally impacted river dominated primarily by water losing conditions. Water physicochemical parameters in the river and nearby groundwater wells were assessed along with pesticide sorption to sediments and bacterial community composition. Degradation and mineralisation batch experiments were set up from six locations (five water losing, one water gaining) using environmentally relevant concentrations of pesticides (10 μg kg^-1). Highly variable DT₅₀ values from 11 to 44 days for MCPA, 11-27 days for metolachlor (MTC) and 60-147 days for propiconazole were calculated based on ~140 day studies. Degradation of MTC led to accumulation of the transformation products MOA and MESA in batch experiments. Noteworthy, MESA was detected in the groundwater wells adjacent to the part of the river impacted by losing conditions suggesting that degradation processes in hyporheic sediments may lead to the formation of transformation products (TP) leaching towards groundwater. Further, from propiconazole was identified a persistent transformation product being different from 1,2,4-triazole. Specific calculated DT₅₀ values could not the linked to bacterial diversity. However, generally all sediment samples were characterised by high bacterial diversity, where approximately 80% of the relative sequence abundances were < 1%, which may increase the likelihood of finding contaminant-degrading genes, thereby explaining the general high contaminant-degrading activity. The studied sediments revealed a high potential to degrade pesticides despite only being exposed to low diffuse pollutant concentrations that is similar to calculated DT₅₀ values in agricultural soils.

Towards evidence-based conservation of subterranean ecosystems

Subterranean ecosystems are among the most widespread environments on Earth, yet we still have poor knowledge of their biodiversity. To raise awareness of subterranean ecosystems, the essential services they provide, and their unique conservation challenges, 2021 and 2022 were designated International Years of Caves and Karst. As these ecosystems have traditionally been overlooked in global conservation agendas and multilateral agreements, a quantitative assessment of solution-based approaches to safeguard subterranean biota and associated habitats is timely. This assessment allows researchers and practitioners to understand the progress made and research needs in subterranean ecology and management. We conducted a systematic review of peer-reviewed and grey literature focused on subterranean ecosystems globally (terrestrial, freshwater, and saltwater systems), to quantify the available evidence-base for the effectiveness of conservation interventions. We selected 708 publications from the years 1964 to 2021 that discussed, recommended, or implemented 1,954 conservation interventions in subterranean ecosystems. We noted a steep increase in the number of studies from the 2000s while, surprisingly, the proportion of studies quantifying the impact of conservation interventions has steadily and significantly decreased in recent years. The effectiveness of 31% of conservation interventions has been tested statistically. We further highlight that 64% of the reported research occurred in the Palearctic and Nearctic biogeographic regions. Assessments of the effectiveness of conservation interventions were heavily biased towards indirect measures (monitoring and risk assessment), a limited sample of organisms (mostly arthropods and bats), and more accessible systems (terrestrial caves). Our results indicate that most conservation science in the field of subterranean biology does not apply a rigorous quantitative approach, resulting in sparse evidence for the effectiveness of interventions. This raises the important question of how to make conservation efforts more feasible to implement, cost-effective, and long-lasting. Although there is no single remedy, we propose a suite of potential solutions to focus our efforts better towards increasing statistical testing and stress the importance of standardising study reporting to facilitate meta-analytical exercises. We also provide a database summarising the available literature, which will help to build quantitative knowledge about interventions likely to yield the greatest impacts depending upon the subterranean species and habitats of interest. We view this as a starting point to shift away from the widespread tendency of recommending conservation interventions based on anecdotal and expert-based information rather than scientific evidence, without quantitatively testing their effectiveness.

Reclaimed Water Reuse for Groundwater Recharge: A Review of Hot Spots and Hot Moments in the Hyporheic Zone

As an alternative resource, reclaimed water is rich in the various nutrients and organic matter that may irreparably endanger groundwater quality through the recharging process. During groundwater recharge with reclaimed water, hot spots and hot moments (HSHMs) in the hyporheic zones, located at the groundwater–reclaimed water interface, play vital roles in cycling and processing energy, carbon, and nutrients, drawing increasing concern in the fields of biogeochemistry, environmental chemistry, and pollution treatment and prevention engineering. This paper aims to review these recent advances and the current state of knowledge of HSHMs in the hyporheic zone with regard to groundwater recharge using reclaimed water, including the generation mechanisms, temporal and spatial characteristics, influencing factors, and identification indicators and methods of HSHMs in the materials cycle. Finally, the development prospects of HSHMs are discussed. It is hoped that this review will lead to a clearer understanding of the processes controlling water flow and pollutant flux, and that further management and control of HSHMs can be achieved, resulting in the development of a more accurate and safer approach to groundwater recharge with reclaimed water.

The biogeochemical responses of hyporheic groundwater to the long-run managed aquifer recharge: Linking microbial communities to hydrochemistry and micropollutants

Interactions of surface water and groundwater (SW-GW) in hyporheic zones produce biogeochemical hotspots. However, response patterns of hyporheic groundwater to external influences remain unclear. In this study, three datasets (hydrochemistry, antibiotics, and microbiome) were collected over a hydrological year to explore the influence of a 12-year managed aquifer recharge (MAR) project. We observed that the long-term MAR practice elevated nutrient and antibiotic levels while reduced redox potential in hyporheic groundwater, and these impacts depended on decreasing SW-GW interaction intensity with aquifer depth. In contrast, the long-term MAR practice increased community dissimilarity of 30-m groundwater but had little impact on 50-m or 80-m groundwater. Moreover, hyporheic community assembly was dominated by dispersal limitation, and thereby co-varied hydrochemistry and antibiotics only attributed to small community variability. The long-term MAR practice decreased species-interaction intensity and changed the abundance of metabolic functions in hyporheic groundwater. Furthermore, predicted community functions involving carbon, nitrogen, sulfur, and manganese cycles for 30-m groundwater showed higher abundances than those for 50- and 80-m groundwater. Collectively, we showed that hyporheic groundwater was sensitive to the SW-GW interaction and human activities, with the interactions of hydrochemistry, contaminants, and microbiome linking to hyporheic groundwater quality and ecosystem functioning.

Influence of the In-Stream Structure on Solute Transport in the Hyporheic Zone

The hyporheic zone (HZ) plays an important role in the river ecosystem, and hyporheic exchange and solute transport in the HZ are important ecological functions. However, the relationship between the design parameters of river structure and solute transport is still poorly understood. In this study, we combined flume experiments and numerical simulations to systematically evaluate how in-stream structures impact the solute transport depth (D_P), hyporheic vertical exchange flux (Q), and solute flux (Qs). The results showed that the in-stream structure had a significant influence on solute transport in the HZ and could obviously increase the intensity of hyporheic exchange and promote solute transport. Model results indicated that D_P, Q, and Qs increased with the ratio of ground height to underground height of structure (H/D) and structure number (N), while Q, D_P, and Qs increased with the structural spacing (S) to begin with; then, Q remained constant, and D_P and Qs decreased as S continued to increase. This study deepened our understanding of the influence of in-stream structural design parameters on HZ solute transport, which is helpful to provide a theoretical basis for ecological restoration projects in the river HZ.

Modeling Contaminant Microbes in Rivers During Both Baseflow and Stormflow

Rivers transport contaminant microorganisms (including fecal indicator bacteria and human pathogens) long distances downstream of diffuse and point sources, posing a human health risk. We present a mobile-immobile model that incorporates transport as well as immobilization and remobilization of contaminant microbes and other fine particles during baseflow and stormflow. During baseflow conditions, hyporheic exchange flow causes particles to accumulate in streambed sediments. Remobilization of stored particles from streambed sediments occurs slowly during baseflow via hyporheic exchange flow, while remobilization is vastly increased during stormflow. Model predictions are compared to observations over a range of artificial and natural flood events in the dairy contaminated Topehaehae Stream, New Zealand. The model outputs closely matched timing and magnitude of E. coli and turbidity observations through multiple high-flow events. By accounting for both state-of-flow and hyporheic exchange processes, the model provides a valuable framework for predicting particle and contaminant microbe behavior in streams.

Reconceptualizing the hyporheic zone for nonperennial rivers and streams

Nonperennial streams dominate global river networks and are increasing in occurrence across space and time. When surface flow ceases or the surface water dries, flow or moisture can be retained in the subsurface sediments of the hyporheic zone, supporting aquatic communities and ecosystem processes. However, hydrological and ecological definitions of the hyporheic zone have been developed in perennial rivers and emphasize the mixing of water and organisms, respectively, from both the surface stream and groundwater. The adaptation of such definitions to include both humid and dry unsaturated conditions could promote characterization of how hydrological and biogeochemical variability shape ecological communities within nonperennial hyporheic zones, advancing our understanding of both ecosystem structure and function in these habitats. To conceptualize hyporheic zones for nonperennial streams, we review how water sources and surface and subsurface structure influence hydrological and physicochemical conditions. We consider the extent of this zone and how biogeochemistry and ecology might vary with surface states. We then link these components to the composition of nonperennial stream communities. Next, we examine literature to identify priorities for hydrological and ecological research exploring nonperennial hyporheic zones. Lastly, by integrating hydrology, biogeochemistry, and ecology, we recommend a multidisciplinary conceptualization of the nonperennial hyporheic zone as the porous subsurface streambed sediments that shift between lotic, lentic, humid, and dry conditions in space and time to support aquatic-terrestrial biodiversity. As river drying increases in extent because of global change, we call for holistic, interdisciplinary research across the terrestrial and aquatic sciences to apply this conceptualization to characterize hyporheic zone structure and function across the full spectrum of hydrological states.

Hyporheic hydraulic geometry: Conceptualizing relationships among hyporheic exchange, storage, and water age

Hyporheic exchange is now widely acknowledged as a key driver of ecosystem processes in many streams. Yet stream ecologists have been slow to adopt nuanced hydrologic frameworks developed and applied by engineers and hydrologists to describe the relationship between water storage, water age, and water balance in finite hydrosystems such as hyporheic zones. Here, in the context of hyporheic hydrology, we summarize a well-established mathematical framework useful for describing hyporheic hydrology, while also applying the framework heuristically to visualize the relationships between water age, rates of hyporheic exchange, and water volume within hyporheic zones. Building on this heuristic application, we discuss how improved accuracy in the conceptualization of hyporheic exchange can yield a deeper understanding of the role of the hyporheic zone in stream ecosystems. Although the equations presented here have been well-described for decades, our aim is to make the mathematical basis as accessible as possible and to encourage broader understanding among aquatic ecologists of the implications of tailed age distributions commonly observed in water discharged from and stored within hyporheic zones. Our quantitative description of “hyporheic hydraulic geometry,” associated visualizations, and discussion offer a nuanced and realistic understanding of hyporheic hydrology to aid in considering hyporheic exchange in the context of river and stream ecosystem science and management.

Role of River–Lake System Sediments and Microbial Activity in the Hyporheic Zone

The effect of river–lake systems on the surface water self-purification process is a significant and not fully recognised scientific issue. The conditions prevailing in the hyporheic zone of these ecosystems are of great importance in the process of component exchange between water and sediments. The aim of this study was to investigate the influence of the type of sediments located at the bottom of the riverbed being part of a river–lake system on microbial activity in the hyporheic zone. An ex situ experiment was used to study the microbiological activity and the transformation of components in the collected river sediments. It was found that the specific properties of sediments varied depending on their location in the riverbed between the lakes comprising the system and that the prevailing meteorological conditions can also have an effect on microbial activity in the hyporheic zone, e.g., aerobic conditions. These conditions determined the intensity of component conversion in the sediments due to microbial metabolism. A closer understanding of the processes occurring in the hyporheic zone may allow the processes of water self-purification within river–lake systems to be supported in the future, which will contribute to the improvement of surface water quality.

Determining hyporheic removal rates of trace organic compounds using non-parametric conservative transport with multiple sorption models

Assessing the transport and reactive processes of contaminants in freshwater streams is crucial in managing water resources sustainably. Particularly the hyporheic zone, the sediment-water interface where surface water and groundwater mix, may possess significant contaminant removal capacities due to its myriad physical, chemical, and microbiological processes. However, modelling approaches aiming at assessing the hyporheic zone's reactivity are either based on simple assumptions, such as, predefining the shape of the residence times distribution (RTD) function, or are computationally not feasible due to a too detailed system characterisation. In addition, parent-daughter reactions of contaminants are barely investigated. The present study introduces a numerical modelling framework for assessing hyporheic reactions of contaminant transformation reactions based on a non-parametric residence time approach combined with multiple sorption models and first-order removal reactions. The proposed framework uses natural electrical conductivity fluctuations to determine conservative transport properties and is demonstrated by interpreting time series of hyporheic point measurements of trace organic compounds, such as pharmaceuticals, and their transformation products using two commonly-used sorption models, namely the simple retardation and the first-order kinetic sorption model. The developed approach gives similar reaction rate coefficient estimates for all contaminants considered for both sorption models tested. The findings highlight that (i) the accurate shape of the RTD is most certainly important for reactive parameter determination and (ii) the daughter reaction rate coefficient may be underestimated if its parent transformation is ignored. The model provides reactive parameter estimates of contaminant transformation reactions with high parameter identifiability and informs which specific parent-daughter-pathway has occurred.

High-Resolution Integrated Transport Model for Studying Surface Water-Groundwater Interaction

Transport processes that lead to exchange of mass between surface water and groundwater play a significant role for the ecological functioning of aquatic systems, for hydrological processes and for biogeochemical transformations. In this study, we present a novel integral modeling approach for flow and transport at the sediment-water interface. The model allows us to simultaneously simulate turbulent surface and subsurface flow and transport with the same conceptual approach. For this purpose, a conservative transport equation was implemented to an existing approach that uses an extended version of the Navier-Stokes equations. Based on previous flume studies which investigated the spreading of a dye tracer under neutral, losing and gaining flow conditions the new solver is validated. Tracer distributions of the experiments are in close agreement with the simulations. The simulated flow paths are significantly affected by in- and outflowing groundwater flow. The highest velocities within the sediment are found for losing condition, which leads to shorter residence times compared to neutral and gaining conditions. The largest extent of the hyporheic exchange flow is observed under neutral condition. The new solver can be used for further examinations of cases that are not suitable for the conventional coupled models, for example, if Reynolds numbers are larger than 10. Moreover, results gained with the integral solver provide high-resolution information on pressure and velocity distributions at the rippled streambed, which can be used to improve flow predictions. This includes the extent of hyporheic exchange under varying ambient groundwater flow conditions.

Transformation of organic micropollutants along hyporheic flow in bedforms of river-simulating flumes

Urban streams receive increasing loads of organic micropollutants from treated wastewaters. A comprehensive understanding of the in-stream fate of micropollutants is thus of high interest for water quality management. Bedforms induce pumping effects considerably contributing to whole stream hyporheic exchange and are hotspots of biogeochemical turnover processes. However, little is known about the transformation of micropollutants in such structures. In the present study, we set up recirculating flumes to examine the transformation of a set of micropollutants along single flowpaths in two triangular bedforms. We sampled porewater from four locations in the bedforms over 78 days and analysed the resulting concentration curves using the results of a hydrodynamic model in combination with a reactive transport model accounting for advection, dispersion, first-order removal and retardation. The four porewater sampling locations were positioned on individual flowpaths with median solute travel times ranging from 11.5 to 43.3 h as shown in a hydrodynamic model previously. Highest stability was estimated for hydrochlorothiazide on all flowpaths. Lowest detectable half-lives were estimated for sotalol (0.7 h) and sitagliptin (0.2 h) along the shortest flowpath. Also, venlafaxine, acesulfame, bezafibrate, irbesartan, valsartan, ibuprofen and naproxen displayed lower half-lives at shorter flowpaths in the first bedform. However, the behavior of many compounds in the second bedform deviated from expectations, where particularly transformation products, e.g. valsartan acid, showed high concentrations. Flowpath-specific behavior as observed for metformin or flume-specific behavior as observed for metoprolol acid, for instance, was attributed to potential small-scale or flume-scale heterogeneity of microbial community compositions, respectively. The results of the study indicate that the shallow hyporheic flow field and the small-scale heterogeneity of the microbial community are major controlling factors for the transformation of relevant micropollutants in river sediments.

Macrophyte Controls on Urban Stream Microbial Metabolic Activity

Urban rivers worldwide are affected directly by macrophyte growth, causing reduced flow velocity and risks of flooding. Therefore, cutting macrophytes is a common management practice to ensure free drainage. The impacts of macrophyte removal on transient storage dynamics and microbial metabolic activity of wastewater-fed urban streams are unknown, preventing any assessment of the hydrodynamic and biogeochemical consequences of this management practice. Slug tracer injections were performed with the conservative tracer uranine and the reactive tracer resazurin to quantify the implications of macrophyte cutting on stream flow dynamics and metabolism. Macrophyte cutting reduced mean tracer arrival times in managed stream reaches but did not significantly decrease whole-stream microbial metabolic activity. In fact, transient storage indices were found to have increased after cutting, suggesting that macrophyte removal and the resulting increase in flow velocity may have enhanced hyporheic exchange flow through streambed sediments. Our results evidence that macrophyte cutting in nutrient-rich urban streams does not necessarily lead to lower in-stream storage and metabolism but that the gain in hyporheic exchange and streambed microbial metabolic activity can compensate for reduced in-stream storage. Increased stream flow resulting from macrophyte removal may therefore even enhance nutrient and pollutant attenuation capacity of streambed sediments.

Invertebrate and Microbial Response to Hyporheic Restoration of an Urban Stream

All cities face complex challenges managing urban stormwater while also protecting urban water bodies. Green stormwater infrastructure and process-based restoration offer alternative strategies that prioritize watershed connectivity. We report on a new urban floodplain restoration technique being tested in the City of Seattle, USA: an engineered hyporheic zone. The hyporheic zone has long been an overlooked component in floodplain restoration. Yet this subsurface area offers enormous potential for stormwater amelioration and is a critical component of healthy streams. From 2014 to 2017, we measured hyporheic temperature, nutrients, and microbial and invertebrate communities at three paired stream reaches with and without hyporheic restoration. At two of the three pairs, water temperature was significantly lower at the restored reach, while dissolved organic carbon and microbial metabolism were higher. Hyporheic invertebrate density and taxa richness were significantly higher across all three restored reaches. These are some of the first quantified responses of hyporheic biological communities to restoration. Our results complement earlier reports of enhanced hydrologic and chemical functioning of the engineered hyporheic zone. Together, this research demonstrates that incorporation of hyporheic design elements in floodplain restoration can enhance temperature moderation, habitat diversity, contaminant filtration, and the biological health of urban streams.

Microbial community compositions and sulfate-reducing bacterial profiles in malodorous urban canal sediments

Anthropogenically impacted urban canals represent distinct freshwater ecosystems that could shape microbial communities in underlying sediments; however, knowledge of the relationships between environmental factors and microbial community compositions and their functions in such an environment is limited. This study characterized the microbial community compositions of malodorous canal sediments at six locations along the Saen Saep Canal in Thailand. 16S rRNA gene amplicon sequencing (MiSeq, Illumina) revealed dominant genera classified as fermentative bacteria, methanogens, and sulfate-reducing bacteria (SRB), all of which emphasized anaerobic environments. SRB, as the primary producers of malodorous hydrogen sulfide, accounted for 8.2-30.4% of the total sequences. dsrB gene clone libraries further identified the SRB species. A constrained correspondence analysis demonstrated a spatial pattern of SRB that correlated with physicochemical parameters in which nitrate and sulfate in sediments were the most influencing factors. Overall, a better understanding of the SRB and other related microorganisms in canal sediments can assist in the future implementation of appropriate olfactory abatement and management methodologies in urban canals.

Responses of resources and consumers to experimental flow pulses in a temporary Mediterranean stream

Determining the resistance and resilience of resources and benthic invertebrates connected to instream refuges and species re-colonization in post-flood periods may help to elucidate mechanisms behind community recovery. This experiment simulated flow pulses in a small temporary stream in an extremely wet year, using upstream control and downstream flooded reaches at three sites in order to assess community resistance and resilience (benthos and drift), and analyse resources (periphyton and benthic organic matter) and invertebrates at pre- and post-flood time periods. The hyporheos was sampled in order to explore species exchanges with benthos. Fewer resources and benthic invertebrates at the beginning of the experiment were found than in previous studies when base flow conditions prevailed. Resource stocks and benthic invertebrates showed high resistance to the flow pulse. Interestingly, there was low resilience of benthic organic matter to natural seasonal flooding. Chlorophyll a did not recover after experimental floods; instead, it was reduced after floods, despite the more benign flow conditions and non-limiting irradiance levels, pointing to top-down control by consumers. Additionally, the experimental flood significantly disturbed only the invertebrate composition in the groundwater-fed stream, which was inhabited by the fewest adapted-to-flood-disturbances macroinvertebrates. Despite the low resilience observed, richness and densities of benthos increased during the study, evidencing progressive colonization. Around 50-60% of macroinvertebrates were present in both benthos and hyporheos. Richness increased after flooding, suggesting that the hyporheic zone could be the main source of colonizers. Three species traits characterized the hyporheos: small size, cocoons and feeders of microorganisms within the fine sediment matrix. The main results indicate that longer-than-normal flood periods in early spring may constrain invertebrate succession before the next summer drought in temporary streams. This study underscores the importance of hyporheic fauna as a significance source of colonizers, highlighting the importance of connectivity to the groundwater.

Bedform characteristics and biofilm community development interact to modify hyporheic exchange

The physical and biological attributes of riverine ecosystems interact in a complex manner which can affect the hydrodynamic behaviour of the system. This can alter the mixing characteristics of a river at the sediment-water interface. Research on hyporheic exchange has increased in recent years driven by a greater appreciation for the importance of this dynamic ecotone in connecting and regulating river systems. An understanding of process-based interactions driving hyporheic exchange is still limited, specifically the feedbacks between the physical and biological controlling factors. The interplay between bed morphology and sediment size on biofilm community development and the impact on hyporheic exchange mechanisms, was experimentally considered. Purpose built recirculating flume systems were constructed and three profiles of bedform investigated: i) flat, ii) undulating λ = 1 m, ii) undulating λ = 0.2 m, across two different sized sediments (0.5 mm and 5 mm). The influence of biofilm growth and bedform interaction on hyporheic exchange was explored, over time, using discrete repeat injections of fluorescent dye into the flumes. Hyporheic exchange rates were greatest in systems with larger sediment sizes (5 mm) and with more bedforms (undulating λ = 0.2). Sediment size was a dominant control in governing biofilm growth and hyporheic exchange in systems with limited bedform. In systems where bedform was prevalent, sediment size and biofilm appeared to no longer be a control on exchange due to the physical influence of advective pumping. Here, exchange rates within these environments were more consistent overtime, despite greater microbial growth. As such, bedform has the potential to overcome the rate limiting effects of biotic factors on hyporheic exchange and sediment size on microbial penetration. This has implications for pollutant and nutrient penetration; bedforms increase hydrological connectivity, generating the opportunity to support microbial communities at depth and as such, improve the self-purification ability of river systems.

Fate of Trace Organic Compounds in Hyporheic Zone Sediments of Contrasting Organic Carbon Content and Impact on the Microbiome

The organic carbon in streambed sediments drives multiple biogeochemical reactions, including the attenuation of organic micropollutants. An attenuation assay using sediment microcosms differing in the initial total organic carbon (TOC) revealed higher microbiome and sorption associated removal efficiencies of trace organic compounds (TrOCs) in the high-TOC compared to the low-TOC sediments. Overall, the combined microbial and sorption associated removal efficiencies of the micropollutants were generally higher than by sorption alone for all compounds tested except propranolol whose removal efficiency was similar via both mechanisms. Quantitative real-time PCR and time-resolved 16S rRNA gene amplicon sequencing revealed that higher bacterial abundance and diversity in the high-TOC sediments correlated with higher microbial removal efficiencies of most TrOCs. The bacterial community in the high-TOC sediment samples remained relatively stable against the stressor effects of TrOC amendment compared to the low-TOC sediment community that was characterized by a decline in the relative abundance of most phyla except Proteobacteria. Bacterial genera that were significantly more abundant in amended relative to unamended sediment samples and thus associated with biodegradation of the TrOCs included Xanthobacter, Hyphomicrobium, Novosphingobium, Reyranella and Terrimonas. The collective results indicated that the TOC content influences the microbial community dynamics and associated biotransformation of TrOCs as well as the sorption potential of the hyporheic zone sediments.

Association between Aquatic Micropollutant Dissipation and River Sediment Bacterial Communities

Assessment of micropollutant biodegradation is essential to determine the persistence of potentially hazardous chemicals in aquatic ecosystems. We studied the dissipation half-lives of 10 micropollutants in sediment-water incubations (based on the OECD 308 standard) with sediment from two European rivers sampled upstream and downstream of wastewater treatment plant (WWTP) discharge. Dissipation half-lives (DT50s) were highly variable between the tested compounds, ranging from 1.5 to 772 days. Sediment from one river sampled downstream from the WWTP showed the fastest dissipation of all micropollutants after sediment RNA normalization. By characterizing sediment bacteria using 16S rRNA sequences, bacterial community composition of a sediment was associated with its capacity for dissipating micropollutants. Bacterial amplicon sequence variants of the genera Ralstonia, Pseudomonas, Hyphomicrobium, and Novosphingobium, which are known degraders of contaminants, were significantly more abundant in the sediment incubations where fast dissipation was observed. Our study illuminates the limitations of the OECD 308 standard to account for variation of dissipation rates of micropollutants due to differences in bacterial community composition. This limitation is problematic particularly for those compounds with DT50s close to regulatory persistence criteria. Thus, it is essential to consider bacterial community composition as a source of variability in regulatory biodegradation and persistence assessments.

Ibuprofen Degradation and Associated Bacterial Communities in Hyporheic Zone Sediments

Ibuprofen, a non-steroidal anti-inflammatory pain reliever, is among pharmaceutical residues of environmental concern ubiquitously detected in wastewater effluents and receiving rivers. Thus, ibuprofen removal potentials and associated bacteria in the hyporheic zone sediments of an impacted river were investigated. Microbially mediated ibuprofen degradation was determined in oxic sediment microcosms amended with ibuprofen (5, 40, 200, and 400 µM), or ibuprofen and acetate, relative to an un-amended control. Ibuprofen was removed by the original sediment microbial community as well as in ibuprofen-enrichments obtained by re-feeding of ibuprofen. Here, 1-, 2-, 3-hydroxy- and carboxy-ibuprofen were the primary transformation products. Quantitative real-time PCR analysis revealed a significantly higher 16S rRNA abundance in ibuprofen-amended relative to un-amended incubations. Time-resolved microbial community dynamics evaluated by 16S rRNA gene and 16S rRNA analyses revealed many new ibuprofen responsive taxa of the Acidobacteria, Actinobacteria, Bacteroidetes, Gemmatimonadetes, Latescibacteria, and Proteobacteria. Two ibuprofen-degrading strains belonging to the genera Novosphingobium and Pseudomonas were isolated from the ibuprofen-enriched sediments, consuming 400 and 300 µM ibuprofen within three and eight days, respectively. The collective results indicated that the hyporheic zone sediments sustain an efficient biotic (micro-)pollutant degradation potential, and hitherto unknown microbial diversity associated with such (micro)pollutant removal.

Correction: Lewandowski, J., et al. Groundwater–Surface Water Interactions: Recent Advances and Interdisciplinary Challenges. Water 2020, 12, 296

The authors wish to make the following correction to this paper [...]

Groundwater–Surface Water Interactions: Recent Advances and Interdisciplinary Challenges

The interactions of groundwater with surface waters such as streams, lakes, wetlands, or oceans are relevant for a wide range of reasons—for example, drinking water resources may rely on hydrologic fluxes between groundwater and surface water. However, nutrients and pollutants can also be transported across the interface and experience transformation, enrichment, or retention along the flow paths and cause impacts on the interconnected receptor systems. To maintain drinking water resources and ecosystem health, a mechanistic understanding of the underlying processes controlling the spatial patterns and temporal dynamics of groundwater–surface water interactions is crucial. This Special Issue provides an overview of current research advances and innovative approaches in the broad field of groundwater–surface water interactions. The 20 research articles and 1 communication of this Special Issue cover a wide range of thematic scopes, scales, and experimental and modelling methods across different disciplines (hydrology, aquatic ecology, biogeochemistry, environmental pollution) collaborating in research on groundwater–surface water interactions. The collection of research papers in this Special Issue also allows the identification of current knowledge gaps and reveals the challenges in establishing standardized measurement, observation, and assessment approaches. With regards to its relevance for environmental and water management and protection, the impact of groundwater–surface water interactions is still not fully understood and is often underestimated, which is not only due to a lack of awareness but also a lack of knowledge and experience regarding appropriate measurement and analysis approaches. This lack of knowledge exchange from research into management practice suggests that more efforts are needed to disseminate scientific results and methods to practitioners and policy makers.

Impact of Bed Form Celerity on Oxygen Dynamics in the Hyporheic Zone

Oxygen distribution and uptake in the hyporheic zone regulate various redox-sensitive reactions and influence habitat conditions. Despite the fact that fine-grain sediments in streams and rivers are commonly in motion, most studies on biogeochemistry have focused on stagnant sediments. In order to evaluate the effect of bed form celerity on oxygen dynamics and uptake in sandy beds, we conducted experiments in a recirculating indoor flume. Oxygen distribution in the bed was measured under various celerities using 2D planar optodes. Bed morphodynamics were measured by a surface elevation sensor and time-lapse photography. Oxygenated zones in stationary beds had a conchoidal shape due to influx through the stoss side of the bed form, and upwelling anoxic water at the lee side. Increasing bed celerity resulted in the gradual disappearance of the upwelling anoxic zone and flattening of the interface between the oxic (moving fraction of the bed) and the anoxic zone (stationary fraction of the bed), as well as in a reduction of the volumetric oxygen uptake rates due shortened residence times in the hyporheic zone. These results suggest that including processes related to bed form migration are important for understanding the biogeochemistry of hyporheic zones.

Mapping Micro-Pollutants and Their Impacts on the Size Structure of Streambed Communities

Recently there has been increasing concern over the vast array of emerging organic contaminants (EOCs) detected in streams and rivers worldwide. Understanding of the ecological implications of these compounds is limited to local scale case studies, partly as a result of technical limitations and a lack of integrative analyses. Here, we apply state-of-the-art instrumentation to analyze a complex suite of EOCs in the streambed of 30 UK streams and their effect on streambed communities. We apply the abundance–body mass (N–M) relationship approach as an integrative metric of the deviation of natural communities from reference status as a result of EOC pollution. Our analysis includes information regarding the N and M for individual prokaryotes, unicellular flagellates and ciliates, meiofauna, and macroinvertebrates. We detect a strong significant dependence of the N–M relationship coefficients with the presence of EOCs in the system, to the point of shielding the effect of other important environmental factors such as temperature, pH, and productivity. However, contrary to other stressors, EOC pollution showed a positive effect on the N–M coefficient in our work. This phenomenon can be largely explained by the increase in large-size tolerant taxa under polluted conditions. We discuss the potential implications of these results in relation to bioaccumulation and biomagnification processes. Our findings shed light on the impact of EOCs on the organization and ecology of the whole streambed community for the first time.