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Schweizer P, Vogl L, Spiecker E, Ophus C, Minor A. Structure and Dynamics of Graphite Intercalation Compounds Analyzed using in situ 4D-STEM. Microsc Microanal 2023; 29:1279-1280. [PMID: 37613685 DOI: 10.1093/micmic/ozad067.654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Affiliation(s)
- P Schweizer
- National Center for Electron Microscopy, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - L Vogl
- National Center for Electron Microscopy, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - E Spiecker
- Institute for Micro- and Nanoanalysis, FAU Erlangen-Nuremberg, Erlangen, Germany
| | - C Ophus
- National Center for Electron Microscopy, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - A Minor
- National Center for Electron Microscopy, Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
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Zylla MM, Leiner J, Rahm AK, Hoffmann T, Lugenbiel P, Schweizer P, Scholz E, Mereles D, Kronsteiner D, Kieser M, Katus HA, Frey N, Thomas D. Catheter Ablation of Atrial Fibrillation in Patients With Heart Failure and Preserved Ejection Fraction. Circ Heart Fail 2022; 15:e009281. [PMID: 36126143 DOI: 10.1161/circheartfailure.121.009281] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
BACKGROUND Coexistence of atrial fibrillation (AF) and heart failure with preserved ejection fraction (HFpEF) is common, affecting morbidity and prognosis. This study evaluates outcome after cryoballoon ablation for AF in HFpEF compared with patients without heart failure. METHODS A total of 102 AF patients with left ventricular ejection fraction ≥50% undergoing cryoballoon ablation were prospectively enrolled. Baseline evaluation included echocardiography, stress echocardiography, 6-minute walk test, biomarkers, and quality of life assessment (Short-Form-36). Procedural parameters and clinical, functional and echocardiographic end points at follow-up ≥12 months after AF ablation were compared between patients with and without HFpEF. RESULTS Patients with HFpEF (n=24) were older (median, 74 years versus 65 years; P=0.001) more often female (83% versus 28%; P<0.001) and characterized by more pronounced AF-related symptoms (median European Heart Rhythm Association score 3 versus 2; P<0.001), higher left atrial pressures (median, 14 mm Hg versus 10 mm Hg; P=0.008), reduced left atrial-appendage velocity (median, 36 cm/s versus 59 cm/s; P<0.001), and reduced distance in the 6-minute walk test (median, 488 m versus 539 m; P<0.001). Patients with HFpEF more often experienced AF recurrence (57% versus 23%; P=0.003), repeat AF ablation (39% versus 14%; P=0.01) and AF-related rehospitalization (26% versus 7%; P=0.016). Heart failure symptoms and elevated cardiac biomarkers persisted, even in patients with HFpEF with successful rhythm control at follow-up. Echocardiographic follow-up showed progression of adverse left atrial remodeling and no relevant improvement in diastolic function in HFpEF. Quality of life improved in patients without HFpEF, whereas patients with HFpEF still exhibited a lower physical component summary score (median, 41.5 versus 53.4; P<0.004). CONCLUSIONS Patients with HFpEF constitute a distinct subgroup with elevated risk for AF recurrence after cryoballon ablation. Functional hallmarks of HFpEF persist, irrespective of rhythm status at follow-up. Future research is needed to optimize treatment strategies in patients with HFpEF. REGISTRATION URL: https://www. CLINICALTRIALS gov; Unique identifier: NCT04317911.
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Affiliation(s)
- Maura M Zylla
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Johannes Leiner
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Ann-Kathrin Rahm
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Tobias Hoffmann
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Patrick Lugenbiel
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Patrick Schweizer
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Eberhard Scholz
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,Now with GRN Klinikum Schwetzingen, Department of Cardiology and Angiology, Bodelschwinghstr' Germany (E.S.)
| | - Derliz Mereles
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | | | - Meinhard Kieser
- Institute of Medical Biometry, Heidelberg, Germany (D.K., M.K.)
| | - Hugo A Katus
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Norbert Frey
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
| | - Dierk Thomas
- Department of Cardiology, Medical University Hospital, Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,HCR (Heidelberg Center for Heart Rhythm Disorders), Medical University Hospital Heidelberg, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.).,DZHK (German Center for Cardiovascular Research), partner site Heidelberg/Mannheim, Germany (M.M.Z., J.L., A.-K.R., T.H., P.L., P.S., E.S., D.M., H.A.K., N.F., D.T.)
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Zylla MM, Leiner J, Rahm AK, Hoffmann T, Lugenbiel P, Schweizer P, Scholz E, Mereles D, Kronsteiner D, Kieser M, Katus H, Frey N, Thomas D. Cryoballoon-ablation of atrial fibrillation in patients with heart failure and preserved ejection fraction. Europace 2022. [DOI: 10.1093/europace/euac053.210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Funding Acknowledgements
Type of funding sources: Public Institution(s). Main funding source(s): Deutsches Zentrum für Herz-Kreislauf-Forschung (DZHK)
Background
Co-existence of atrial fibrillation (AF) and heart failure with preserved ejection fraction (HFpEF) is common and severely affects morbidity and prognosis.
Purpose
This study evaluates outcome after cryoballoon-ablation for AF in HFpEF compared to patients without heart failure employing multiple diagnostic modalities.
Methods
A total of 102 patients scheduled for cryoablation of AF with LVEF≥50% were prospectively enrolled. Baseline evaluation included echocardiography, stress echocardiography, six-minute-walk-test, biomarker measurements and quality of life assessment (SF-36). HFpEF was diagnosed according to current guidelines and confirmed applying the HFA-PEFF-Score. Procedural parameters as well as clinical, functional and echocardiographic endpoints at follow-up ≥12 months after AF-ablation were compared between patients with and without HFpEF.
Results
Patients with HFpEF (n=24) were older (median: 73.5 years [Q25: 66.5 years; Q75: 75.8 years] vs. 64.5 years [Q25: 55.0 years; Q75: 71.3 years], P<0.001) and more often female (83.3% vs. 28.2%). They were characterized by more pronounced AF-related symptoms (median EHRA-score: 3.0 [Q25:3.0; Q75:3.0] vs. 2.0 [Q25: 2.0; Q75: 3.0], P<0.001), reduced distance in six-minute-walk-test (median 487.5m [Q25: 378.1m; Q75: 517.8m] vs. 539.0m [Q25: 489.3m; Q75:589.1 m], P<0.001), and higher mean left atrial (LA)-pressure measured at the needle tip at transseptal puncture (14.0mmHg [Q25: 10.3mmHg; Q75: 21.5mmHg] vs. 10.0 mmHg [Q25: 8.0mmHg; Q75: 13.3mmHg], P=0.008). Procedural parameters were comparable between the two subgroups. Rates of AF-recurrence, repeat AF-ablation and AF-related re-hospitalization were increased in HFpEF (Figure 1A-C), which was confirmed after adjusting for intergroup differences in sex and age distribution by multiple regression analysis. There was no improvement of heart failure-related symptoms and persistent elevation of cardiac biomarkers, even in HFpEF-patients with successful restoration of sinus rhythm at follow-up (Figure 2A-C). Echocardiographic follow-up showed progression of adverse LA-remodeling (LA-volume index at baseline: 35.8ml/m2 [Q25: 32.2ml/m2; Q75: 41.9ml/m2] vs. 12-month follow-up: 40.5ml/m2 [Q25: 36.0ml/m2; Q75: 51.4ml/m2], P=0.017) and no improvement in diastolic function in HFpEF (E/e’ at baseline: 9.7 [Q25: 7.8; Q75: 12.1] vs 12-month follow-up: 10.2 [Q25: 8.4; Q75: 11.8], P=0.874), in particular in patients with HFpEF and AF-recurrence. Quality of life improved in patients without HFpEF in both physical and mental summary scales, however, no beneficial effect was seen in HFpEF.
Conclusion
Patients with HFpEF constitute a distinct subgroup with an elevated risk for arrhythmia recurrence after cryoablation of AF. Functional hallmarks and heart-failure related symptoms of HFpEF persisted in our cohort, irrespective of rhythm-status at follow-up. Future research is needed to optimize tailored treatment strategies in HFpEF.
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Affiliation(s)
- MM Zylla
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - J Leiner
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - AK Rahm
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - T Hoffmann
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - P Lugenbiel
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - P Schweizer
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - E Scholz
- GRN-Clinic Schwetzingen, Department of Cardiology, Schwetzingen, Germany
| | - D Mereles
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - D Kronsteiner
- University Hospital Heidelberg, Institute of Medical Biometry, Heidelberg, Germany
| | - M Kieser
- University Hospital Heidelberg, Institute of Medical Biometry, Heidelberg, Germany
| | - H Katus
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - N Frey
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
| | - D Thomas
- University Hospital Heidelberg, Department of Cardiology, Heidelberg, Germany
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Karki SJ, Reilly A, Zhou B, Mascarello M, Burke J, Doohan F, Douchkov D, Schweizer P, Feechan A. A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease. J Exp Bot 2021. [PMID: 33095257 DOI: 10.5061/dryad.9w0vt4bcx] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Septoria tritici blotch (STB), caused by the ascomycete fungus Zymoseptoria tritici, is a major threat to wheat production worldwide. The Z. tritici genome encodes many small secreted proteins (ZtSSPs) that are likely to play a key role in the successful colonization of host tissues. However, few of these ZtSSPs have been functionally characterized for their role during infection. In this study, we identified and characterized a small, conserved cysteine-rich secreted effector from Z. tritici which has homologues in other plant pathogens in the Dothideomycetes. ZtSSP2 was expressed throughout Z. tritici infection in wheat, with the highest levels observed early during infection. A yeast two-hybrid assay revealed an interaction between ZtSSP2 and wheat E3 ubiquitin ligase (TaE3UBQ) in yeast, and this was further confirmed in planta using bimolecular fluorescence complementation and co-immunoprecipitation. Down-regulation of this wheat E3 ligase using virus-induced gene silencing increased the susceptibility of wheat to STB. Together, these results suggest that TaE3UBQ is likely to play a role in plant immunity to defend against Z. tritici.
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Affiliation(s)
- Sujit Jung Karki
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Aisling Reilly
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Binbin Zhou
- School of Biology and Environmental Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Maurizio Mascarello
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
- Ecology, Evolution and Biodiversity Conservation, Charles Deberiotstraat 8 32, 3000 Leuven, Belgium
| | - James Burke
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Fiona Doohan
- School of Biology and Environmental Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Dimitar Douchkov
- Institute of Plant Genetics and Crop Plant Research (IPK), Cytogenetics, Gatersleben, Germany
| | - Patrick Schweizer
- Institute of Plant Genetics and Crop Plant Research (IPK), Cytogenetics, Gatersleben, Germany
| | - Angela Feechan
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
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Karki SJ, Reilly A, Zhou B, Mascarello M, Burke J, Doohan F, Douchkov D, Schweizer P, Feechan A. A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease. J Exp Bot 2021; 72:733-746. [PMID: 33095257 PMCID: PMC7853600 DOI: 10.1093/jxb/eraa489] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Accepted: 10/15/2020] [Indexed: 05/05/2023]
Abstract
Septoria tritici blotch (STB), caused by the ascomycete fungus Zymoseptoria tritici, is a major threat to wheat production worldwide. The Z. tritici genome encodes many small secreted proteins (ZtSSPs) that are likely to play a key role in the successful colonization of host tissues. However, few of these ZtSSPs have been functionally characterized for their role during infection. In this study, we identified and characterized a small, conserved cysteine-rich secreted effector from Z. tritici which has homologues in other plant pathogens in the Dothideomycetes. ZtSSP2 was expressed throughout Z. tritici infection in wheat, with the highest levels observed early during infection. A yeast two-hybrid assay revealed an interaction between ZtSSP2 and wheat E3 ubiquitin ligase (TaE3UBQ) in yeast, and this was further confirmed in planta using bimolecular fluorescence complementation and co-immunoprecipitation. Down-regulation of this wheat E3 ligase using virus-induced gene silencing increased the susceptibility of wheat to STB. Together, these results suggest that TaE3UBQ is likely to play a role in plant immunity to defend against Z. tritici.
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Affiliation(s)
- Sujit Jung Karki
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Aisling Reilly
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Binbin Zhou
- School of Biology and Environmental Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Maurizio Mascarello
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
- Ecology, Evolution and Biodiversity Conservation, Charles Deberiotstraat 8 32, 3000 Leuven, Belgium
| | - James Burke
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Fiona Doohan
- School of Biology and Environmental Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
| | - Dimitar Douchkov
- Institute of Plant Genetics and Crop Plant Research (IPK), Cytogenetics, Gatersleben, Germany
| | - Patrick Schweizer
- Institute of Plant Genetics and Crop Plant Research (IPK), Cytogenetics, Gatersleben, Germany
| | - Angela Feechan
- School of Agriculture & Food Science and UCD Earth Institute, University College Dublin, Belfield, Dublin 4, Ireland
- Correspondence:
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Youssef HM, Koppolu R, Rutten T, Korzun V, Schweizer P, Schnurbusch T. Correction to: Genetic mapping of the labile (lab) gene: a recessive locus causing irregular spikelet fertility in labile-barley (Hordeum vulgare convar. labile). Theor Appl Genet 2020; 133:2759. [PMID: 32696169 DOI: 10.1007/s00122-020-03646-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
While continuing our quest towards the identification of the labile (lab) locus in barley, we discovered that the previously assigned map location on the long arm of chromosome 5H was wrong.
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Affiliation(s)
- Helmy M Youssef
- Institute of Agricultural and Nutritional Sciences, Faculty of Natural Sciences III, Martin Luther University Halle-Wittenberg, 06120, Halle, Germany
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3 OT Gatersleben, 06466, Seeland, Germany
- Faculty of Agriculture, Cairo University, Giza, Egypt
| | - Ravi Koppolu
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3 OT Gatersleben, 06466, Seeland, Germany
| | - Twan Rutten
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3 OT Gatersleben, 06466, Seeland, Germany
| | - Viktor Korzun
- Cereals Biotechnology, KWS LOCHOW GMBH, 37574, Einbeck, Germany
| | - Patrick Schweizer
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3 OT Gatersleben, 06466, Seeland, Germany
| | - Thorsten Schnurbusch
- Institute of Agricultural and Nutritional Sciences, Faculty of Natural Sciences III, Martin Luther University Halle-Wittenberg, 06120, Halle, Germany.
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3 OT Gatersleben, 06466, Seeland, Germany.
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Pogoda M, Liu F, Douchkov D, Djamei A, Reif JC, Schweizer P, Schulthess AW. Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei). PLoS One 2020; 15:e0235565. [PMID: 32614894 PMCID: PMC7332009 DOI: 10.1371/journal.pone.0235565] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 06/18/2020] [Indexed: 12/12/2022] Open
Abstract
Powdery mildew is an important foliar disease of barley (Hordeum vulgare L.) caused by the biotrophic fungus Blumeria graminis f. sp. hordei (Bgh). The understanding of the resistance mechanism is essential for future resistance breeding. In particular, the identification of race-nonspecific resistance genes is important because of their regarded durability and broad-spectrum activity. We assessed the severity of powdery mildew infection on detached seedling leaves of 267 barley accessions using two poly-virulent isolates and performed a genome-wide association study exploiting 201 of these accessions. Two-hundred and fourteen markers, located on six barley chromosomes are associated with potential race-nonspecific Bgh resistance or susceptibility. Initial steps for the functional validation of four promising candidates were performed based on phenotype and transcription data. Specific candidate alleles were analyzed via transient gene silencing as well as transient overexpression. Microarray data of the four selected candidates indicate differential regulation of the transcription in response to Bgh infection. Based on our results, all four candidate genes seem to be involved in the responses to powdery mildew attack. In particular, the transient overexpression of specific alleles of two candidate genes, a potential arabinogalactan protein and the barley homolog of Arabidopsis thaliana’s Light-Response Bric-a-Brac/-Tramtrack/-Broad Complex/-POxvirus and Zinc finger (AtLRB1) or AtLRB2, were top candidates of novel powdery mildew susceptibility genes.
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Affiliation(s)
- Maria Pogoda
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Fang Liu
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Dimitar Douchkov
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Armin Djamei
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Jochen C. Reif
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Patrick Schweizer
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Albert W. Schulthess
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
- * E-mail:
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8
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Robinson CT, Schweizer P, Larsen A, Schubert CJ, Siebers AR. Beaver effects on macroinvertebrate assemblages in two streams with contrasting morphology. Sci Total Environ 2020; 722:137899. [PMID: 32197166 DOI: 10.1016/j.scitotenv.2020.137899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 03/09/2020] [Accepted: 03/11/2020] [Indexed: 06/10/2023]
Abstract
Beaver populations are increasing throughout Europe and especially in Switzerland. Beaver are major ecological engineers of fluvial systems, dramatically influencing river morphology, ecohydrology and, consequently, aquatic and terrestrial biota. This study compared macroinvertebrate assemblages and trophic structure at two beaver complexes with contrasting topography in Switzerland over an annual cycle. One complex (Marthalen) was in a low gradient open basin, whereas the other complex (Flaach) flowed through a higher gradient ravine-like basin. Both complexes were embedded in an overall agricultural landscape matrix. Water physico-chemistry differed between the two complexes with nitrogen, phosphorus, and DOC being higher at Marthalen than at Flaach. Both complexes showed strong seasonality in physico-chemistry, but retention of nutrients (N, P) was highest in summer and only at Marthalen. Both complexes also showed strong seasonality in macroinvertebrate assemblages, although assemblages differed substantially between complexes. At Marthalen, macroinvertebrate assemblages were predominantly lentic in character at 'pool' sites within the complex. At Flaach, lotic macroinvertebrate assemblages were common at most sites with some lentic taxa also being present. Dietary shifts based on carbon/nitrogen stable isotopes occurred in spring and summer among sites at both complexes (autochthonous resource use increasing over allochthonous resource use downstream), although being most pronounced at Marthalen. In contrast, similar resource use across sites occurred in winter within both complexes. Although beaver significantly influenced fluvial dynamics and macroinvertebrate assemblage structure at both complexes, this influence was most pronounced at Marthalen where beaver caused the system to become more wetland in character, e.g., via higher hydraulic residence time, than at Flaach. We conclude that topography can shape beaver effects on fluvial systems and resident biota.
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Affiliation(s)
- C T Robinson
- Aquatic Ecology, Eawag, 8600 Dübendorf, Switzerland; Institute of Integrative Biology, ETH-Zürich, 8092 Zürich, Switzerland.
| | - P Schweizer
- Aquatic Ecology, Eawag, 8600 Dübendorf, Switzerland
| | - A Larsen
- Soil Geography and Landscape group, Wageningen University, Droevendaalsesteeg 3, 6708 PB Wageningen, The Netherlands
| | - C J Schubert
- Surface Waters, Eawag, 6047 Kastanienbaum, Switzerland
| | - A R Siebers
- Aquatic Ecology, Eawag, 8600 Dübendorf, Switzerland
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9
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Hoseinzadeh P, Ruge-Wehling B, Schweizer P, Stein N, Pidon H. High Resolution Mapping of a Hordeum bulbosum-Derived Powdery Mildew Resistance Locus in Barley Using Distinct Homologous Introgression Lines. Front Plant Sci 2020; 11:225. [PMID: 32194602 PMCID: PMC7063055 DOI: 10.3389/fpls.2020.00225] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 02/13/2020] [Indexed: 05/17/2023]
Abstract
Powdery mildew caused by Blumeria graminis f. sp. hordei (Bgh) is one of the main foliar diseases in barley (Hordeum vulgare L.; Hv). Naturally occurring resistance genes used in barley breeding are a cost effective and environmentally sustainable strategy to minimize the impact of pathogens, however, the primary gene pool of H. vulgare contains limited diversity owing to recent domestication bottlenecks. To ensure durable resistance against this pathogen, more genes are required that could be unraveled by investigation of secondary barley gene-pool. A large set of Hordeum bulbosum (Hb) introgression lines (ILs) harboring a diverse set of desirable resistance traits have been developed and are being routinely used as source of novel diversity in gene mapping studies. Nevertheless, this strategy is often compromised by a lack of recombination between the introgressed fragment and the orthologous chromosome of the barley genome. In this study, we fine-mapped a Hb gene conferring resistance to barley powdery mildew. The initial genotyping of two Hb ILs mapping populations with differently sized 2HS introgressions revealed severely reduced interspecific recombination in the region of the introgressed segment, preventing precise localization of the gene. To overcome this difficulty, we developed an alternative strategy, exploiting intraspecific recombination by crossing two Hv/Hb ILs with collinear Hb introgressions, one of which carries a powdery mildew resistance gene, while the other doesn't. The intraspecific recombination rate in the Hb-introgressed fragment of 2HS was approximately 20 times higher than it was in the initial simple ILs mapping populations. Using high-throughput genotyping-by-sequencing (GBS), we allocated the resistance gene to a 1.4 Mb interval, based on an estimate using the Hv genome as reference, in populations of only 103 and 146 individuals, respectively, similar to what is expected at this locus in barley. The most likely candidate resistance gene within this interval is part of the coiled-coil nucleotide-binding-site leucine-rich-repeat (CC-NBS-LLR) gene family, which is over-represented among genes conferring strong dominant resistance to pathogens. The reported strategy can be applied as a general strategic approach for identifying genes underlying traits of interest in crop wild relatives.
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Affiliation(s)
- Parastoo Hoseinzadeh
- Genomics of Genetic Resources, Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Brigitte Ruge-Wehling
- Institute for Breeding Research on Agricultural Crops, Julius Kühn Institute (JKI), Sanitz, Germany
| | - Patrick Schweizer
- Pathogen-Stress Genomics, Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Nils Stein
- Genomics of Genetic Resources, Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
- Department of Crop Sciences, Center for Integrated Breeding Research (CiBreed), Georg-August-University, Göttingen, Germany
| | - Hélène Pidon
- Genomics of Genetic Resources, Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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10
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Słomińska-Durdasiak KM, Kollers S, Korzun V, Nowara D, Schweizer P, Djamei A, Reif JC. Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population. Theor Appl Genet 2020; 133:341-351. [PMID: 31646363 DOI: 10.1007/s00122-019-03463-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 10/17/2019] [Indexed: 06/10/2023]
Abstract
Markers, located in Dicer1 and Ara6 genes, which are likely involved in cross-kingdom RNA trafficking, are associated with FHB resistance in GABI wheat population and were validated in biparental population. Association studies are a common approach to detect marker-trait associations for Fusarium head blight (FHB) resistance in wheat (Triticum aestivum), although verification of detected associations is exceptional. In the present study, candidate-gene association mapping (CG) of genes from silencing and secretory pathways, which may be involved in wheat resistance against FHB and cross-kingdom RNA trafficking, was performed. Fourteen markers, located in nine genes, were tested for association with FHB resistance in 356 lines from the GABI (genome analysis of the biological system of plants) wheat population. Three markers located in the genes Dicer1 and Ara6 were shown to be significantly associated with the studied trait. Verification of this finding was performed using the recombinant inbred lines (RILs) population 'Apache × Biscay', segregating for four of our 14 selected markers. We could show association of the Ara6 marker with plant height as well as association with FHB resistance for three markers located in Rab5-like GTPase gene Ara6 and Dicer1. These results confirmed the trait-marker associations detected also in the CG approach. Gene products of the associated genes are involved in response of the plant to pathogens, plant metabolism and may be involved in cross-kingdom RNA trafficking efficiency. The markers detected in the GABI wheat population, which were also validated in the biparental population, can potentially be used in wheat breeding.
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Affiliation(s)
- Karolina Maria Słomińska-Durdasiak
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany.
| | - Sonja Kollers
- KWS LOCHOW GmbH, Ferdinand-von-Lochow-Straße 5, 29303, Bergen, Germany
| | - Viktor Korzun
- KWS LOCHOW GmbH, Ferdinand-von-Lochow-Straße 5, 29303, Bergen, Germany
| | - Daniela Nowara
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany
| | - Patrick Schweizer
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany
| | - Armin Djamei
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany
| | - Jochen Christoph Reif
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Gatersleben, Germany
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11
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Hoseinzadeh P, Zhou R, Mascher M, Himmelbach A, Niks RE, Schweizer P, Stein N. High Resolution Genetic and Physical Mapping of a Major Powdery Mildew Resistance Locus in Barley. Front Plant Sci 2019; 10:146. [PMID: 30838011 PMCID: PMC6382739 DOI: 10.3389/fpls.2019.00146] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 01/28/2019] [Indexed: 05/02/2023]
Abstract
Powdery mildew caused by Blumeria graminis f. sp. hordei is a foliar disease with highly negative impact on yield and grain quality in barley. Thus, breeding for powdery mildew resistance is an important goal and requires constantly the discovery of new sources of natural resistance. Here, we report the high resolution genetic and physical mapping of a dominant race-specific powdery mildew resistance locus, originating from an Ethiopian spring barley accession 'HOR2573,' conferring resistance to several modern mildew isolates. High-resolution genetic mapping narrowed down the interval containing the resistance locus to a physical span of 850 kb. Four candidate genes with homology to known disease resistance gene families were identified. The mapped resistance locus coincides with a previously reported resistance locus from Hordeum laevigatum, suggesting allelism at the same locus in two different barley lines. Therefore, we named the newly mapped resistance locus from HOR2573 as MlLa-H. The reported co-segregating and flanking markers may provide new tools for marker-assisted selection of this resistance locus in barley breeding.
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Affiliation(s)
- Parastoo Hoseinzadeh
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Ruonan Zhou
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Martin Mascher
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Axel Himmelbach
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Rients E. Niks
- Department of Plant Science, Plant Breeding, Wageningen University & Research, Wageningen, Netherlands
| | - Patrick Schweizer
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Nils Stein
- Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
- Department of Crop Sciences, Center for Integrated Breeding Research, University of Göttingen, Göttingen, Germany
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12
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Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D. siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction. Front Plant Sci 2019; 10:1023. [PMID: 31475020 PMCID: PMC6704232 DOI: 10.3389/fpls.2019.01023] [Citation(s) in RCA: 54] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 07/22/2019] [Indexed: 05/18/2023]
Abstract
RNA interference (RNAi) is a technique used for transgene-mediated gene silencing based on the mechanism of posttranscriptional gene silencing (PTGS). PTGS is an ubiquitous basic biological phenomenon involved in the regulation of transcript abundance and plants' immune response to viruses. PTGS also mediates genomic stability by silencing of retroelements. RNAi has become an important research tool for studying gene function by strong and selective suppression of target genes. Here, we present si-Fi, a software tool for design optimization of RNAi constructs necessary for specific target gene knock-down. It offers efficiency prediction of RNAi sequences and off-target search, required for the practical application of RNAi. si-Fi is an open-source (CC BY-SA license) desktop software that works in Microsoft Windows environment and can use custom sequence databases in standard FASTA format.
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Affiliation(s)
- Stefanie Lück
- Leibniz Institute of Plant Genetics and Crop Plant Research, Seeland, Germany
| | - Tino Kreszies
- Institute of Cellular and Molecular Botany, University of Bonn, Bonn, Germany
| | - Marc Strickert
- Physics II Institute, University of Giessen, Giessen, Germany
| | - Patrick Schweizer
- Leibniz Institute of Plant Genetics and Crop Plant Research, Seeland, Germany
| | - Markus Kuhlmann
- Leibniz Institute of Plant Genetics and Crop Plant Research, Seeland, Germany
| | - Dimitar Douchkov
- Leibniz Institute of Plant Genetics and Crop Plant Research, Seeland, Germany
- *Correspondence: Dimitar Douchkov,
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13
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Wang H, Chen W, Eggert K, Charnikhova T, Bouwmeester H, Schweizer P, Hajirezaei MR, Seiler C, Sreenivasulu N, von Wirén N, Kuhlmann M. Corrigendum to: Abscisic acid influences tillering by modulation of strigolactones in barley. J Exp Bot 2018; 69:5307. [PMID: 30165677 PMCID: PMC6184540 DOI: 10.1093/jxb/ery306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Affiliation(s)
- Hongwen Wang
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Wanxin Chen
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Kai Eggert
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Tatsiana Charnikhova
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg, Wageningen, The Netherlands
| | - Harro Bouwmeester
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, XH Amsterdam, The Netherlands
| | - Patrick Schweizer
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Mohammad R Hajirezaei
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Christiane Seiler
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Nese Sreenivasulu
- International Rice Research Institute (IRRI), Grain Quality and Nutrition Center, Metro Manila, Philippines
| | - Nicolaus von Wirén
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
| | - Markus Kuhlmann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse, Stadt Seeland, Germany
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14
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Rajaraman J, Douchkov D, Lück S, Hensel G, Nowara D, Pogoda M, Rutten T, Meitzel T, Brassac J, Höfle C, Hückelhoven R, Klinkenberg J, Trujillo M, Bauer E, Schmutzer T, Himmelbach A, Mascher M, Lazzari B, Stein N, Kumlehn J, Schweizer P. Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance. Genome Biol 2018; 19:116. [PMID: 30111359 PMCID: PMC6092874 DOI: 10.1186/s13059-018-1472-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 07/04/2018] [Indexed: 11/11/2022] Open
Abstract
Background The large and highly repetitive genomes of the cultivated species Hordeum vulgare (barley), Triticum aestivum (wheat), and Secale cereale (rye) belonging to the Triticeae tribe of grasses appear to be particularly rich in gene-like sequences including partial duplicates. Most of them have been classified as putative pseudogenes. In this study we employ transient and stable gene silencing- and over-expression systems in barley to study the function of HvARM1 (for H. vulgare Armadillo 1), a partial gene duplicate of the U-box/armadillo-repeat E3 ligase HvPUB15 (for H. vulgare Plant U-Box 15). Results The partial ARM1 gene is derived from a gene-duplication event in a common ancestor of the Triticeae and contributes to quantitative host as well as nonhost resistance to the biotrophic powdery mildew fungus Blumeria graminis. In barley, allelic variants of HvARM1 but not of HvPUB15 are significantly associated with levels of powdery mildew infection. Both HvPUB15 and HvARM1 proteins interact in yeast and plant cells with the susceptibility-related, plastid-localized barley homologs of THF1 (for Thylakoid formation 1) and of ClpS1 (for Clp-protease adaptor S1) of Arabidopsis thaliana. A genome-wide scan for partial gene duplicates reveals further events in barley resulting in stress-regulated, potentially neo-functionalized, genes. Conclusion The results suggest neo-functionalization of the partial gene copy HvARM1 increases resistance against powdery mildew infection. It further links plastid function with susceptibility to biotrophic pathogen attack. These findings shed new light on a novel mechanism to employ partial duplication of protein-protein interaction domains to facilitate the expansion of immune signaling networks. Electronic supplementary material The online version of this article (10.1186/s13059-018-1472-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Jeyaraman Rajaraman
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany.
| | - Dimitar Douchkov
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany.
| | - Stefanie Lück
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Götz Hensel
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Daniela Nowara
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Maria Pogoda
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Twan Rutten
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Tobias Meitzel
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Jonathan Brassac
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Caroline Höfle
- Technische Universität München, Emil-Ramann-Straße 2, D-85354, Freising, Germany
| | - Ralph Hückelhoven
- Technische Universität München, Emil-Ramann-Straße 2, D-85354, Freising, Germany
| | - Jörn Klinkenberg
- Leibniz Institut für Pflanzenbiochemie, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Marco Trujillo
- Leibniz Institut für Pflanzenbiochemie, Weinberg 3, D-06120, Halle (Saale), Germany.,Albert-Ludwigs-Universität Freiburg, Institut für Biologie II, Zellbiologie, D-79104, Freiburg, Germany
| | - Eva Bauer
- Technische Universität München, Liesel-Beckmann-Straße 2, D-85354, Freising, Germany
| | - Thomas Schmutzer
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Axel Himmelbach
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Martin Mascher
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Barbara Lazzari
- Parco Technologico Padano, Via Einstein, Loc. Cascina Codazza, 26900, Lodi, Italy
| | - Nils Stein
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Jochen Kumlehn
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
| | - Patrick Schweizer
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK Gatersleben), Corrensstrasse 3, D-06466, Stadt Seeland, Germany
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15
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Wang H, Chen W, Eggert K, Charnikhova T, Bouwmeester H, Schweizer P, Hajirezaei MR, Seiler C, Sreenivasulu N, von Wirén N, Kuhlmann M. Abscisic acid influences tillering by modulation of strigolactones in barley. J Exp Bot 2018; 69:3883-3898. [PMID: 29982677 PMCID: PMC6054196 DOI: 10.1093/jxb/ery200] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 06/15/2018] [Indexed: 05/05/2023]
Abstract
Strigolactones (SLs) represent a class of plant hormones that are involved in inhibiting shoot branching and in promoting abiotic stress responses. There is evidence that the biosynthetic pathways of SLs and abscisic acid (ABA) are functionally connected. However, little is known about the mechanisms underlying the interaction of SLs and ABA, and the relevance of this interaction for shoot architecture. Based on sequence homology, four genes (HvD27, HvMAX1, HvCCD7, and HvCCD8) involved in SL biosynthesis were identified in barley and functionally verified by complementation of Arabidopsis mutants or by virus-induced gene silencing. To investigate the influence of ABA on SLs, two transgenic lines accumulating ABA as a result of RNAi-mediated down-regulation of HvABA 8'-hydroxylase 1 and 3 were employed. LC-MS/MS analysis confirmed higher ABA levels in root and stem base tissues in these transgenic lines. Both lines showed enhanced tiller formation and lower concentrations of 5-deoxystrigol in root exudates, which was detected for the first time as a naturally occurring SL in barley. Lower expression levels of HvD27, HvMAX1, HvCCD7, and HvCCD8 indicated that ABA suppresses SL biosynthesis, leading to enhanced tiller formation in barley.
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Affiliation(s)
- Hongwen Wang
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Wanxin Chen
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Kai Eggert
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Tatsiana Charnikhova
- Laboratory of Plant Physiology, Wageningen University, Wageningen, The Netherlands
| | - Harro Bouwmeester
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, XH Amsterdam, The Netherlands
| | - Patrick Schweizer
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Mohammad R Hajirezaei
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Christiane Seiler
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
| | - Nese Sreenivasulu
- International Rice Research Institute (IRRI), Grain Quality and Nutrition Center, Metro Manila, Philippines
| | - Nicolaus von Wirén
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
- Correspondence: or
| | - Markus Kuhlmann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany
- Correspondence: or
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16
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Lugenbiel P, Xynogalos P, Schweizer P, Katus HA, Thomas D, Scholz EP. Successful localization and ablation of a Mahaim potential using a high-resolution mapping catheter after a failed conventional ablation attempt. Clin Res Cardiol 2018. [PMID: 29532157 DOI: 10.1007/s00392-018-1231-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Patrick Lugenbiel
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany.,Department of Cardiology, University of Heidelberg, Heidelberg, Germany
| | - Panagiotis Xynogalos
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany.,Department of Cardiology, University of Heidelberg, Heidelberg, Germany
| | - Patrick Schweizer
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany.,Department of Cardiology, University of Heidelberg, Heidelberg, Germany
| | - Hugo A Katus
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany.,Department of Cardiology, University of Heidelberg, Heidelberg, Germany.,DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, Heidelberg, Germany
| | - Dierk Thomas
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany.,Department of Cardiology, University of Heidelberg, Heidelberg, Germany.,DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, Heidelberg, Germany
| | - Eberhard P Scholz
- Heidelberg Center for Heart Rhythm Disorders (HCR) & Department of Cardiology, Angiology, and Pneumology, University Hospital Heidelberg, Im Neuenheimer Feld 410, 69120, Heidelberg, Germany. .,Department of Cardiology, University of Heidelberg, Heidelberg, Germany. .,DZHK (German Centre for Cardiovascular Research), Partner Site Heidelberg/Mannheim, Heidelberg, Germany.
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17
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Delventhal R, Rajaraman J, Stefanato FL, Rehman S, Aghnoum R, McGrann GRD, Bolger M, Usadel B, Hedley PE, Boyd L, Niks RE, Schweizer P, Schaffrath U. A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley. BMC Plant Biol 2017; 17:232. [PMID: 29202692 PMCID: PMC5715502 DOI: 10.1186/s12870-017-1178-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 11/15/2017] [Indexed: 05/23/2023]
Abstract
BACKGROUND Nonhost resistance (NHR) protects plants against a vast number of non-adapted pathogens which implicates a potential exploitation as source for novel disease resistance strategies. Aiming at a fundamental understanding of NHR a global analysis of transcriptome reprogramming in the economically important Triticeae cereals wheat and barley, comparing host and nonhost interactions in three major fungal pathosystems responsible for powdery mildew (Blumeria graminis ff. ssp.), cereal blast (Magnaporthe sp.) and leaf rust (Puccinia sp.) diseases, was performed. RESULTS In each pathosystem a significant transcriptome reprogramming by adapted- or non-adapted pathogen isolates was observed, with considerable overlap between Blumeria, Magnaporthe and Puccinia. Small subsets of these general pathogen-regulated genes were identified as differentially regulated between host and corresponding nonhost interactions, indicating a fine-tuning of the general pathogen response during the course of co-evolution. Additionally, the host- or nonhost-related responses were rather specific for each pair of adapted and non-adapted isolates, indicating that the nonhost resistance-related responses were to a great extent pathosystem-specific. This pathosystem-specific reprogramming may reflect different resistance mechanisms operating against non-adapted pathogens with different lifestyles, or equally, different co-option of the hosts by the adapted isolates to create an optimal environment for infection. To compare the transcriptional reprogramming between wheat and barley, putative orthologues were identified. Within the wheat and barley general pathogen-regulated genes, temporal expression profiles of orthologues looked similar, indicating conserved general responses in Triticeae against fungal attack. However, the comparison of orthologues differentially expressed between host and nonhost interactions revealed fewer commonalities between wheat and barley, but rather suggested different host or nonhost responses in the two cereal species. CONCLUSIONS Taken together, our results suggest independent co-evolutionary forces acting on host pathosystems mirrored by barley- or wheat-specific nonhost responses. As a result of evolutionary processes, at least for the pathosystems investigated, NHR appears to rely on rather specific plant responses.
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Affiliation(s)
- Rhoda Delventhal
- Department of Plant Physiology, RWTH Aachen University, 52056 Aachen, Germany
| | - Jeyaraman Rajaraman
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany
| | - Francesca L. Stefanato
- Department of Disease and Stress Biology, John Innes Centre, Norwich Research Park, Colney Lane, Colney, Norwich, Norfolk, NR4 7UH UK
- Present address: Molecular microbiology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK
| | - Sajid Rehman
- Plant Breeding, Graduate School for Experimental Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands
- Present address: Biodiversity and Integrated Gene Management Program (BIGM), International Center for Agriculture Research in the Dry Areas, Rabat, Morocco
| | - Reza Aghnoum
- Plant Breeding, Graduate School for Experimental Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands
- Present address: Seed and Plant Improvement Research Department, Khorasan Razavi Agricultural and Natural Resources Research and Education Center, AREEO, Mashhad, Iran
| | - Graham R. D. McGrann
- Department of Disease and Stress Biology, John Innes Centre, Norwich Research Park, Colney Lane, Colney, Norwich, Norfolk, NR4 7UH UK
| | - Marie Bolger
- Institute of Botany and Molecular Genetics, BioSC, RWTH Aachen University, 52056 Aachen, Germany
| | - Björn Usadel
- Institute of Botany and Molecular Genetics, BioSC, RWTH Aachen University, 52056 Aachen, Germany
| | - Pete E. Hedley
- The James Hutton Institute, Invergowrie, Dundee, Scotland DD2 5DA UK
| | - Lesley Boyd
- NIAB, Huntingdon Road, Cambridge, CB3 0LE UK
| | - Rients E. Niks
- Plant Breeding, Graduate School for Experimental Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands
| | - Patrick Schweizer
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany
| | - Ulrich Schaffrath
- Department of Plant Physiology, RWTH Aachen University, 52056 Aachen, Germany
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18
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Chowdhury J, Lück S, Rajaraman J, Douchkov D, Shirley NJ, Schwerdt JG, Schweizer P, Fincher GB, Burton RA, Little A. Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew. Front Plant Sci 2017; 8:445. [PMID: 28408913 PMCID: PMC5374208 DOI: 10.3389/fpls.2017.00445] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Accepted: 03/14/2017] [Indexed: 05/27/2023]
Abstract
Heteroxylan has recently been identified as an important component of papillae, which are formed during powdery mildew infection of barley leaves. Deposition of heteroxylan near the sites of attempted fungal penetration in the epidermal cell wall is believed to enhance the physical resistance to the fungal penetration peg and hence to improve pre-invasion resistance. Several glycosyltransferase (GT) families are implicated in the assembly of heteroxylan in the plant cell wall, and are likely to work together in a multi-enzyme complex. Members of key GT families reported to be involved in heteroxylan biosynthesis are up-regulated in the epidermal layer of barley leaves during powdery mildew infection. Modulation of their expression leads to altered susceptibility levels, suggesting that these genes are important for penetration resistance. The highest level of resistance was achieved when a GT43 gene was co-expressed with a GT47 candidate gene, both of which have been predicted to be involved in xylan backbone biosynthesis. Altering the expression level of several candidate heteroxylan synthesis genes can significantly alter disease susceptibility. This is predicted to occur through changes in the amount and structure of heteroxylan in barley papillae.
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Affiliation(s)
- Jamil Chowdhury
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
| | - Stefanie Lück
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Jeyaraman Rajaraman
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Dimitar Douchkov
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Neil J. Shirley
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
| | - Julian G. Schwerdt
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
| | - Patrick Schweizer
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Geoffrey B. Fincher
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
| | - Rachel A. Burton
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
| | - Alan Little
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of AdelaideGlen Osmond, SA, Australia
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19
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Douchkov D, Lueck S, Hensel G, Kumlehn J, Rajaraman J, Johrde A, Doblin MS, Beahan CT, Kopischke M, Fuchs R, Lipka V, Niks RE, Bulone V, Chowdhury J, Little A, Burton RA, Bacic A, Fincher GB, Schweizer P. The barley (Hordeum vulgare) cellulose synthase-like D2 gene (HvCslD2) mediates penetration resistance to host-adapted and nonhost isolates of the powdery mildew fungus. New Phytol 2016; 212:421-33. [PMID: 27352228 DOI: 10.1111/nph.14065] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 05/10/2016] [Indexed: 05/20/2023]
Abstract
Cell walls and cellular turgor pressure shape and suspend the bodies of all vascular plants. In response to attack by fungal and oomycete pathogens, which usually breach their host's cell walls by mechanical force or by secreting lytic enzymes, plants often form local cell wall appositions (papillae) as an important first line of defence. The involvement of cell wall biosynthetic enzymes in the formation of these papillae is still poorly understood, especially in cereal crops. To investigate the role in plant defence of a candidate gene from barley (Hordeum vulgare) encoding cellulose synthase-like D2 (HvCslD2), we generated transgenic barley plants in which HvCslD2 was silenced through RNA interference (RNAi). The transgenic plants showed no growth defects but their papillae were more successfully penetrated by host-adapted, virulent as well as avirulent nonhost isolates of the powdery mildew fungus Blumeria graminis. Papilla penetration was associated with lower contents of cellulose in epidermal cell walls and increased digestion by fungal cell wall degrading enzymes. The results suggest that HvCslD2-mediated cell wall changes in the epidermal layer represent an important defence reaction both for nonhost and for quantitative host resistance against nonadapted wheat and host-adapted barley powdery mildew pathogens, respectively.
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Affiliation(s)
- Dimitar Douchkov
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Stefanie Lueck
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Goetz Hensel
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Jochen Kumlehn
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Jeyaraman Rajaraman
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Annika Johrde
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany
| | - Monika S Doblin
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Vic., 3010, Australia
| | - Cherie T Beahan
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Vic., 3010, Australia
| | - Michaela Kopischke
- Department of Plant Cell Biology, Albrecht-von-Haller-Institute, Georg-August-University Göttingen, Julia-Lermontowa-Weg 3, Göttingen, D-37077, Germany
| | - René Fuchs
- Department of Plant Cell Biology, Albrecht-von-Haller-Institute, Georg-August-University Göttingen, Julia-Lermontowa-Weg 3, Göttingen, D-37077, Germany
| | - Volker Lipka
- Department of Plant Cell Biology, Albrecht-von-Haller-Institute, Georg-August-University Göttingen, Julia-Lermontowa-Weg 3, Göttingen, D-37077, Germany
| | - Rients E Niks
- Plant Sciences, Wageningen University, PO Box 386, Wageningen, 6700AJ, the Netherlands
| | - Vincent Bulone
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- Division of Glycocience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Center, Stockholm, SE-106 91, Sweden
| | - Jamil Chowdhury
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Alan Little
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Rachel A Burton
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Antony Bacic
- ARC Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Vic., 3010, Australia
| | - Geoffrey B Fincher
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Patrick Schweizer
- Leibniz Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, Stadt Seeland, 06466, Germany.
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20
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Chowdhury J, Schober MS, Shirley NJ, Singh RR, Jacobs AK, Douchkov D, Schweizer P, Fincher GB, Burton RA, Little A. Down-regulation of the glucan synthase-like 6 gene (HvGsl6) in barley leads to decreased callose accumulation and increased cell wall penetration by Blumeria graminis f. sp. hordei. New Phytol 2016; 212:434-43. [PMID: 27364233 DOI: 10.1111/nph.14086] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Accepted: 06/01/2016] [Indexed: 05/18/2023]
Abstract
The recent characterization of the polysaccharide composition of papillae deposited at the barley cell wall during infection by the powdery mildew pathogen, Blumeria graminis f. sp. hordei (Bgh), has provided new targets for the generation of enhanced disease resistance. The role of callose in papilla-based penetration resistance of crop species is largely unknown because the genes involved in the observed callose accumulation have not been identified unequivocally. We have employed both comparative and functional genomics approaches to identify the functional orthologue of AtGsl5 in the barley genome. HvGsl6 (the barley glucan synthase-like 6 gene), which has the highest sequence identity to AtGsl5, is the only Bgh-induced gene among the HvGsls examined in this study. Through double-stranded RNA interference (dsRNAi)-mediated silencing of HvGsl6, we have shown that the down-regulation of HvGsl6 is associated with a lower accumulation of papillary and wound callose and a higher susceptibility to penetration of the papillae by Bgh, compared with control lines. The results indicate that the HvGsl6 gene is a functional orthologue of AtGsl5 and is involved in papillary callose accumulation in barley. The increased susceptibility of HvGsl6 dsRNAi transgenic lines to infection indicates that callose positively contributes to the barley fungal penetration resistance mechanism.
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Affiliation(s)
- Jamil Chowdhury
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Michael S Schober
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Neil J Shirley
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Rohan R Singh
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Andrew K Jacobs
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Dimitar Douchkov
- Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, OT Gatersleben, Stadt Seeland, 06466, Germany
| | - Patrick Schweizer
- Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, OT Gatersleben, Stadt Seeland, 06466, Germany
| | - Geoffrey B Fincher
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Rachel A Burton
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Alan Little
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
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21
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Chen W, Kastner C, Nowara D, Oliveira-Garcia E, Rutten T, Zhao Y, Deising HB, Kumlehn J, Schweizer P. Host-induced silencing of Fusarium culmorum genes protects wheat from infection. J Exp Bot 2016; 67:4979-91. [PMID: 27540093 PMCID: PMC5014151 DOI: 10.1093/jxb/erw263] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Plants producing antisense or double-stranded RNA molecules that target specific genes of eukaryotic pests or pathogens can become protected from their attack. This beneficial effect was also reported for plant-fungus interactions and is believed to reflect uptake of the RNAs by the fungus via an as yet unknown mechanism, followed by target gene silencing. Here we report that wheat plants pre-infected with Barley stripe mosaic virus (BSMV) strains containing antisense sequences against target genes of the Fusarium head blight (FHB) fungus F. culmorum caused a reduction of corresponding transcript levels in the pathogen and reduced disease symptoms. Stable transgenic wheat plants carrying an RNAi hairpin construct against the β-1, 3-glucan synthase gene FcGls1 of F. culmorum or a triple combination of FcGls1 with two additional, pre-tested target genes also showed enhanced FHB resistance in leaf and spike inoculation assays under greenhouse and near-field conditions, respectively. Microscopic evaluation of F. culmorum development in plants transiently or stably expressing FcGls1 silencing constructs revealed aberrant, swollen fungal hyphae, indicating severe hyphal cell wall defects. The results lead us to propose host-induced gene silencing (HIGS) as a plant protection approach that may also be applicable to highly FHB-susceptible wheat genotypes.
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Affiliation(s)
- Wanxin Chen
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Christine Kastner
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Daniela Nowara
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Ely Oliveira-Garcia
- Martin-Luther Universität Halle-Wittenberg, Phytopathologie und Pflanzenschutz, Betty Heimann Straße 3, D-06120 Halle, Germany
| | - Twan Rutten
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Yusheng Zhao
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Holger B Deising
- Martin-Luther Universität Halle-Wittenberg, Phytopathologie und Pflanzenschutz, Betty Heimann Straße 3, D-06120 Halle, Germany
| | - Jochen Kumlehn
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
| | - Patrick Schweizer
- Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) Gatersleben, Corrensstrasse 3, D-06466 Stadt Seeland, Germany
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22
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Ghaffari MR, Ghabooli M, Khatabi B, Hajirezaei MR, Schweizer P, Salekdeh GH. Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley. Plant Mol Biol 2016; 90:699-717. [PMID: 26951140 DOI: 10.1007/s11103-016-0461-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Accepted: 02/25/2016] [Indexed: 05/23/2023]
Abstract
The root endophytic fungus Piriformospora indica enhances plant adaptation to environmental stress based on general and non-specific plant species mechanisms. In the present study, we integrated the ionomics, metabolomics, and transcriptomics data to identify the genes and metabolic regulatory networks conferring salt tolerance in P. indica-colonized barley plants. To this end, leaf samples were harvested at control (0 mM NaCl) and severe salt stress (300 mM NaCl) in P. indica-colonized and non-inoculated barley plants 4 weeks after fungal inoculation. The metabolome analysis resulted in an identification of a signature containing 14 metabolites and ions conferring tolerance to salt stress. Gene expression analysis has led to the identification of 254 differentially expressed genes at 0 mM NaCl and 391 genes at 300 mM NaCl in P. indica-colonized compared to non-inoculated samples. The integration of metabolome and transcriptome analysis indicated that the major and minor carbohydrate metabolism, nitrogen metabolism, and ethylene biosynthesis pathway might play a role in systemic salt-tolerance in leaf tissue induced by the root-colonized fungus.
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Affiliation(s)
- Mohammad Reza Ghaffari
- Department of Systems Biology, Agricultural Biotechnology Research Institute, Karaj, Iran
| | - Mehdi Ghabooli
- Department of Agronomy, Faculty of Agriculture, Malayer University, Malayer, Iran
| | - Behnam Khatabi
- Department of Biological Sciences, Delaware State University, Dover, DE, USA
| | - Mohammad Reza Hajirezaei
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Patrick Schweizer
- Department of Breeding Research, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
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23
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Rajaraman J, Douchkov D, Hensel G, Stefanato FL, Gordon A, Ereful N, Caldararu OF, Petrescu AJ, Kumlehn J, Boyd LA, Schweizer P. An LRR/Malectin Receptor-Like Kinase Mediates Resistance to Non-adapted and Adapted Powdery Mildew Fungi in Barley and Wheat. Front Plant Sci 2016; 7:1836. [PMID: 28018377 PMCID: PMC5156707 DOI: 10.3389/fpls.2016.01836] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 11/21/2016] [Indexed: 05/04/2023]
Abstract
Pattern recognition receptors (PRRs) belonging to the multigene family of receptor-like kinases (RLKs) are the sensing devices of plants for microbe- or pathogen-associated molecular patterns released from microbial organisms. Here we describe Rnr8 (for Required for non-host resistance 8) encoding HvLEMK1, a LRR-malectin domain-containing transmembrane RLK that mediates non-host resistance of barley to the non-adapted wheat powdery mildew fungus Blumeria graminis f.sp. tritici. Transgenic barley lines with silenced HvLEMK1 allow entry and colony growth of the non-adapted pathogen, although sporulation was reduced and final colony size did not reach that of the adapted barley powdery mildew fungus B. graminis f.sp. hordei. Transient expression of the barley or wheat LEMK1 genes enhanced resistance in wheat to the adapted wheat powdery mildew fungus while expression of the same genes did not protect barley from attack by the barley powdery mildew fungus. The results suggest that HvLEMK1 is a factor mediating non-host resistance in barley and quantitative host resistance in wheat to the wheat powdery mildew fungus.
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Affiliation(s)
- Jeyaraman Rajaraman
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Dimitar Douchkov
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | - Götz Hensel
- Plant Reproductive Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | | | - Anna Gordon
- National Institute of Agricultural BotanyCambridge, UK
| | - Nelzo Ereful
- National Institute of Agricultural BotanyCambridge, UK
| | - Octav F. Caldararu
- Department of Bioinformatics and Structural Biochemistry, Institute of Biochemistry of the Romanian AcademyBucharest, Romania
| | - Andrei-Jose Petrescu
- Department of Bioinformatics and Structural Biochemistry, Institute of Biochemistry of the Romanian AcademyBucharest, Romania
| | - Jochen Kumlehn
- Plant Reproductive Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
| | | | - Patrick Schweizer
- Pathogen-Stress Genomics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)Stadt Seeland, Germany
- *Correspondence: Patrick Schweizer,
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24
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Douchkov D, Lück S, Johrde A, Nowara D, Himmelbach A, Rajaraman J, Stein N, Sharma R, Kilian B, Schweizer P. Discovery of genes affecting resistance of barley to adapted and non-adapted powdery mildew fungi. Genome Biol 2015; 15:518. [PMID: 25476012 PMCID: PMC4302706 DOI: 10.1186/s13059-014-0518-8] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Indexed: 01/01/2023] Open
Abstract
Background Non-host resistance, NHR, to non-adapted pathogens and quantitative host resistance, QR, confer durable protection to plants and are important for securing yield in a longer perspective. However, a more targeted exploitation of the trait usually possessing a complex mode of inheritance by many quantitative trait loci, QTLs, will require a better understanding of the most important genes and alleles. Results Here we present results from a transient-induced gene silencing, TIGS, approach of candidate genes for NHR and QR in barley against the powdery mildew fungus Blumeria graminis. Genes were selected based on transcript regulation, multigene-family membership or genetic map position. Out of 1,144 tested RNAi-target genes, 96 significantly affected resistance to the non-adapted wheat- or the compatible barley powdery mildew fungus, with an overlap of four genes. TIGS results for QR were combined with transcript regulation data, allele-trait associations, QTL co-localization and copy number variation resulting in a meta-dataset of 51 strong candidate genes with convergent evidence for a role in QR. Conclusions This study represents an initial, functional inventory of approximately 3% of the barley transcriptome for a role in NHR or QR against the powdery mildew pathogen. The discovered candidate genes support the idea that QR in this Triticeae host is primarily based on pathogen-associated molecular pattern-triggered immunity, which is compromised by effector molecules produced by the compatible pathogen. The overlap of four genes with significant TIGS effects both in the NHR and QR screens also indicates shared components for both forms of durable pathogen resistance. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0518-8) contains supplementary material, which is available to authorized users.
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Chowdhury J, Henderson M, Schweizer P, Burton RA, Fincher GB, Little A. Differential accumulation of callose, arabinoxylan and cellulose in nonpenetrated versus penetrated papillae on leaves of barley infected with Blumeria graminis f. sp. hordei. New Phytol 2014; 204:650-660. [PMID: 25138067 DOI: 10.1111/nph.12974] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2014] [Accepted: 07/07/2014] [Indexed: 05/21/2023]
Abstract
In plants, cell walls are one of the first lines of defence for protecting cells from successful invasion by fungal pathogens and are a major factor in basal host resistance. For the plant cell to block penetration attempts, it must adapt its cell wall to withstand the physical and chemical forces applied by the fungus. Papillae that have been effective in preventing penetration by pathogens are traditionally believed to contain callose as the main polysaccharide component. Here, we have re-examined the composition of papillae of barley (Hordeum vulgare) attacked by the powdery mildew fungus Blumeria graminis f. sp. hordei (Bgh) using a range of antibodies and carbohydrate-binding modules that are targeted to cell wall polysaccharides. The data show that barley papillae induced during infection with Bgh contain, in addition to callose, significant concentrations of cellulose and arabinoxylan. Higher concentrations of callose, arabinoxylan and cellulose are found in effective papillae, compared with ineffective papillae. The papillae have a layered structure, with the inner core consisting of callose and arabinoxylan and the outer layer containing arabinoxylan and cellulose. The association of arabinoxylan and cellulose with penetration resistance suggests new targets for the improvement of papilla composition and enhanced disease resistance.
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Affiliation(s)
- Jamil Chowdhury
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Marilyn Henderson
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Patrick Schweizer
- Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, D-06466, Gatersleben, Germany
| | - Rachel A Burton
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Geoffrey B Fincher
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Alan Little
- ARC Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
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Youssef HM, Koppolu R, Rutten T, Korzun V, Schweizer P, Schnurbusch T. Genetic mapping of the labile (lab) gene: a recessive locus causing irregular spikelet fertility in labile-barley (Hordeum vulgare convar. labile). Theor Appl Genet 2014; 127:1123-1131. [PMID: 24563243 DOI: 10.1007/s00122-014-2284-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2013] [Accepted: 02/03/2014] [Indexed: 06/03/2023]
Abstract
The recessive labile locus mapped on chromosome 5HL causes irregular spikelet fertility and controls floret development as well as row-type in barley. The labile-barley displays a variable number of fertile spikelets at each rachis internode (0-3 fertile spikelets/rachis internode) which is intermediate between that observed in two- or six-rowed types. Previous re-sequencing of Vrs1 in 219 labile-barley (Hordeum vulgare L. convar. labile) accessions showed that all carried a six-rowed specific allele. We therefore hypothesized that this seemingly random reduction in spikelet fertility is most likely caused by the labile (lab) locus, which we aimed to phenotypically and genetically define. Here, we report a detailed phenotypic analysis of spikelet fertility in labile-barleys in comparison to two- and six-rowed genotypes using scanning electron microscopy analysis. We found that the first visible morphological deviation occurred during the stamen primordium stage, when we regularly observed the appearance of arrested central floral primordia in labile but not in two- or six-rowed barleys. At late stamen and early awn primordium stages, lateral florets in two-rowed and only some in labile-barley showed retarded development and reduction in size compared with fully fertile lateral florets in six-rowed barley. We used two F2 mapping populations to generate whole genome genetic linkage maps and ultimately locate the lab locus as a recessive Mendelian trait to a 4.5-5.8 cM interval at approximately 80 cM on chromosome 5HL. Our results will help identifying the role of the lab gene in relation to other spikelet fertility factors in barley.
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Affiliation(s)
- Helmy M Youssef
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466, Gatersleben, Germany
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27
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Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis MM, Graner A, Schweizer P, Scholz U, Mayer K, Stein N. Conserved synteny-based anchoring of the barley genome physical map. Funct Integr Genomics 2013. [PMID: 23812960 DOI: 10.1007/s10142‐013‐0327‐2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Gene order is largely collinear in the small-grained cereals, a feature which has proved helpful in both marker development and positional cloning. The accuracy of a virtual gene order map ("genome zipper") for barley (Hordeum vulgare), developed by combining a genetic map of this species with a large number of gene locations obtained from the maps constructed in other grass species, was evaluated here both at the genome-wide level and at the fine scale in a representative segment of the genome. Comparing the whole genome "genome zipper" maps with a genetic map developed by using transcript-derived markers, yielded an accuracy of >94 %. The fine-scale comparison involved a 14 cM segment of chromosome arm 2HL. One hundred twenty-eight genes of the "genome zipper" interval were analysed. Over 95 % (45/47) of the polymorphic markers were genetically mapped and allocated to the expected region of 2HL, following the predicted order. A further 80 of the 128 genes were assigned to the correct chromosome arm 2HL by analysis of wheat-barley addition lines. All 128 gene-based markers developed were used to probe a barley bacterial artificial chromosome (BAC) library, delivering 26 BAC contigs from which all except two were anchored to the targeted zipper interval. The results demonstrate that the gene order predicted by the "genome zipper" is remarkably accurate and that the "genome zipper" represents a highly efficient informational resource for the systematic identification of gene-based markers and subsequent physical map anchoring of the barley genome.
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Affiliation(s)
- Naser Poursarebani
- Leibniz Institute of Plant Genetics and Crop Plant Research-IPK, Corrensstr. 3, 06466 Seeland, OT, Gatersleben, Germany
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28
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Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis MM, Graner A, Schweizer P, Scholz U, Mayer K, Stein N. Conserved synteny-based anchoring of the barley genome physical map. Funct Integr Genomics 2013; 13:339-50. [PMID: 23812960 DOI: 10.1007/s10142-013-0327-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2013] [Revised: 05/17/2013] [Accepted: 05/28/2013] [Indexed: 10/26/2022]
Abstract
Gene order is largely collinear in the small-grained cereals, a feature which has proved helpful in both marker development and positional cloning. The accuracy of a virtual gene order map ("genome zipper") for barley (Hordeum vulgare), developed by combining a genetic map of this species with a large number of gene locations obtained from the maps constructed in other grass species, was evaluated here both at the genome-wide level and at the fine scale in a representative segment of the genome. Comparing the whole genome "genome zipper" maps with a genetic map developed by using transcript-derived markers, yielded an accuracy of >94 %. The fine-scale comparison involved a 14 cM segment of chromosome arm 2HL. One hundred twenty-eight genes of the "genome zipper" interval were analysed. Over 95 % (45/47) of the polymorphic markers were genetically mapped and allocated to the expected region of 2HL, following the predicted order. A further 80 of the 128 genes were assigned to the correct chromosome arm 2HL by analysis of wheat-barley addition lines. All 128 gene-based markers developed were used to probe a barley bacterial artificial chromosome (BAC) library, delivering 26 BAC contigs from which all except two were anchored to the targeted zipper interval. The results demonstrate that the gene order predicted by the "genome zipper" is remarkably accurate and that the "genome zipper" represents a highly efficient informational resource for the systematic identification of gene-based markers and subsequent physical map anchoring of the barley genome.
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Affiliation(s)
- Naser Poursarebani
- Leibniz Institute of Plant Genetics and Crop Plant Research-IPK, Corrensstr. 3, 06466 Seeland, OT, Gatersleben, Germany
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29
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Pliego C, Nowara D, Bonciani G, Gheorghe DM, Xu R, Surana P, Whigham E, Nettleton D, Bogdanove AJ, Wise RP, Schweizer P, Bindschedler LV, Spanu PD. Host-induced gene silencing in barley powdery mildew reveals a class of ribonuclease-like effectors. Mol Plant Microbe Interact 2013; 26:633-42. [PMID: 23441578 DOI: 10.1094/mpmi-01-13-0005-r] [Citation(s) in RCA: 82] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Obligate biotrophic pathogens of plants must circumvent or counteract defenses to guarantee accommodation inside the host. To do so, they secrete a variety of effectors that regulate host immunity and facilitate the establishment of pathogen feeding structures called haustoria. The barley powdery mildew fungus Blumeria graminis f. sp. hordei produces a large number of proteins predicted to be secreted from haustoria. Fifty of these Blumeria effector candidates (BEC) were screened by host-induced gene silencing (HIGS), and eight were identified that contribute to infection. One shows similarity to β-1,3 glucosyltransferases, one to metallo-proteases, and two to microbial secreted ribonucleases; the remainder have no similarity to proteins of known function. Transcript abundance of all eight BEC increases dramatically in the early stages of infection and establishment of haustoria, consistent with a role in that process. Complementation analysis using silencing-insensitive synthetic cDNAs demonstrated that the ribonuclease-like BEC 1011 and 1054 are bona fide effectors that function within the plant cell. BEC1011 specifically interferes with pathogen-induced host cell death. Both are part of a gene superfamily unique to the powdery mildew fungi. Structural modeling was consistent, with BEC1054 adopting a ribonuclease-like fold, a scaffold not previously associated with effector function.
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Affiliation(s)
- Clara Pliego
- Department of Life Science, Imperial College, London, UK
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Florschütz K, Schröter A, Schmieder S, Chen W, Schweizer P, Sonntag F, Danz N, Baronian K, Kunze G. 'Phytochip': on-chip detection of phytopathogenic RNA viruses by a new surface plasmon resonance platform. J Virol Methods 2013; 189:80-6. [PMID: 23391824 DOI: 10.1016/j.jviromet.2013.01.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2012] [Revised: 12/21/2012] [Accepted: 01/14/2013] [Indexed: 10/27/2022]
Abstract
The surface plasmon resonance (SPR) based 'Phytochip' was developed to distinguish virus-infected plants from non-infected plants. The system detects DNA-RNA hybridization to show the presence of phytopathogenic viruses such as the RNA virus barley stripe mosaic virus (BSMV) in wheat leaves. To achieve this BSMV and wheat specific oligonucleotides, and a negative control yeast oligonucleotide, were immobilized on a SPR gold surface chip. After optimization of the hybridization parameters with purified wheat samples, wheat infected with BSMV resulted in detectable signals with both the BSMV and the wheat probes. In contrast, a hybridization reaction was not be detected with the negative probe. The method is fast and sensitive with a detection time of 3000s (50min), a detection limit of 14.7pgμl(-1) BSMV RNA and a measuring range of 14.7-84pgμl(-1) BSMV RNA (1.323-7.56ng BSMV RNA per 90μl sample). These characteristics, combined with the high throughput design, make it suitable for application in plant breeding and virus control.
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Affiliation(s)
- Kristina Florschütz
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, D-06466 Gatersleben, Germany
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Rayapuram C, Jensen MK, Maiser F, Shanir JV, Hornshøj H, Rung JH, Gregersen PL, Schweizer P, Collinge DB, Lyngkjær MF. Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley. Mol Plant Pathol 2012; 13:135-47. [PMID: 21819533 PMCID: PMC6638725 DOI: 10.1111/j.1364-3703.2011.00736.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The receptor-like protein kinases (RLKs) constitute a large and diverse group of proteins controlling numerous plant physiological processes, including development, hormone perception and stress responses. The cysteine-rich RLKs (CRKs) represent a prominent subfamily of transmembrane-anchored RLKs. We have identified a putative barley (Hordeum vulgare) CRK gene family member, designated HvCRK1. The mature putative protein comprises 645 amino acids, and includes a putative receptor domain containing two characteristic 'domain 26 of unknown function' (duf26) domains in the N-terminal region, followed by a rather short 17-amino-acid transmembrane domain, which includes an AAA motif, two features characteristic of endoplasmic reticulum (ER)-targeted proteins and, finally, a characteristic putative protein kinase domain in the C-terminus. The HvCRK1 transcript was isolated from leaves inoculated with the biotrophic fungal pathogen Blumeria graminis f.sp. hordei (Bgh). HvCRK1 transcripts were observed to accumulate transiently following Bgh inoculation of susceptible barley. Transient silencing of HvCRK1 expression in bombarded epidermal cells led to enhanced resistance to Bgh, but did not affect R-gene-mediated resistance. Silencing of HvCRK1 phenocopied the effective penetration resistance found in mlo-resistant barley plants, and the possible link between HvCRK1 and MLO was substantiated by the fact that HvCRK1 induction on Bgh inoculation was dependent on Mlo. Finally, using both experimental and in silico approaches, we demonstrated that HvCRK1 localizes to the ER of barley cells. The negative effect on basal resistance against Bgh and the functional aspects of MLO- and ER-localized HvCRK1 signalling on Bgh inoculation are discussed.
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Affiliation(s)
- Cbgowda Rayapuram
- Department of Plant Biology and Biotechnology, University of Copenhagen, 1871 Frederiksberg, Denmark
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Guerra D, Mastrangelo AM, Lopez-Torrejon G, Marzin S, Schweizer P, Stanca AM, del Pozo JC, Cattivelli L, Mazzucotelli E. Identification of a protein network interacting with TdRF1, a wheat RING ubiquitin ligase with a protective role against cellular dehydration. Plant Physiol 2012; 158:777-89. [PMID: 22167118 PMCID: PMC3271766 DOI: 10.1104/pp.111.183988] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Plants exploit ubiquitination to modulate the proteome with the final aim to ensure environmental adaptation and developmental plasticity. Ubiquitination targets are specifically driven to degradation through the action of E3 ubiquitin ligases. Genetic analyses have indicated wide functions of ubiquitination in plant life; nevertheless, despite the large number of predicted E3s, only a few of them have been characterized so far, and only a few ubiquitination targets are known. In this work, we characterized durum wheat (Triticum durum) RING Finger1 (TdRF1) as a durum wheat nuclear ubiquitin ligase. Moreover, its barley (Hordeum vulgare) homolog was shown to protect cells from dehydration stress. A protein network interacting with TdRF1 has been defined. The transcription factor WHEAT BEL1-TYPE HOMEODOMAIN1 (WBLH1) was degraded in a TdRF1-dependent manner through the 26S proteasome in vivo, the mitogen-activated protein kinase TdWNK5 [for Triticum durum WITH NO LYSINE (K)5] was able to phosphorylate TdRF1 in vitro, and the RING-finger protein WHEAT VIVIPAROUS-INTERACTING PROTEIN2 (WVIP2) was shown to have a strong E3 ligase activity. The genes coding for the TdRF1 interactors were all responsive to cold and/or dehydration stress, and a negative regulative function in dehydration tolerance was observed for the barley homolog of WVIP2. A role in the control of plant development was previously known, or predictable based on homology, for wheat BEL1-type homeodomain1(WBLH1). Thus, TdRF1 E3 ligase might act regulating the response to abiotic stress and remodeling plant development in response to environmental constraints.
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Schweizer P, Stein N. Large-scale data integration reveals colocalization of gene functional groups with meta-QTL for multiple disease resistance in barley. Mol Plant Microbe Interact 2011; 24:1492-501. [PMID: 21770767 DOI: 10.1094/mpmi-05-11-0107] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Race-nonspecific and durable resistance of plant genotypes to major pathogens is highly relevant for yield stability and sustainable crop production but difficult to handle in practice due to its polygenic inheritance by quantitative trait loci (QTL). As far as the underlying genes are concerned, very little is currently known in the most important crop plants such as the cereals. Here, we integrated publicly available data for barley (Hordeum vulgare subsp. vulgare) in order to detect the most important genomic regions for QTL-mediated resistance to a number of fungal pathogens and localize specific functional groups of genes within these regions. This identified 20 meta-QTL, including eight hot spots for resistance to multiple diseases that were distributed over all chromosomes. At least one meta-QTL region for resistance to the powdery mildew fungus Blumeria graminis was found to be co-linear between barley and wheat, suggesting partial evolutionary conservation. Large-scale genetic mapping revealed that functional groups of barley genes involved in secretory processes and cell-wall reinforcement were significantly over-represented within QTL for resistance to powdery mildew. Overall, the results demonstrate added value resulting from large-scale genetic and genomic data integration and may inform genomic-selection procedures for race-nonspecific and durable disease resistance in barley.
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Affiliation(s)
- Patrick Schweizer
- Leibniz-Institut fur Pflanzengenetik und Kulturpflanzenforschung, Germany.
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Schweizer P, Duhme N, Thomas D, Becker R, Zehelein J, Draguhn A, Bruehl C, Katus HA, Koenen M. The Novel cAMP-Insensitive HCN4-695X Mutation is Associated with Marked Sinus Bradycardia but Regular Autonomic Rate Control. Biophys J 2011. [DOI: 10.1016/j.bpj.2010.12.779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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Spies A, Korzun V, Bayles R, Rajaraman J, Himmelbach A, Hedley PE, Schweizer P. Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Front Plant Sci 2011; 2:113. [PMID: 22629270 PMCID: PMC3355509 DOI: 10.3389/fpls.2011.00113] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2011] [Accepted: 12/22/2011] [Indexed: 05/18/2023]
Abstract
Race-non-specific, or quantitative, pathogen resistance is of high importance to plant breeders due to its expected durability. However, it is usually controlled by multiple quantitative trait loci (QTL) and therefore difficult to handle in practice. Knowing the genes that underlie race-non-specific resistance (NR) would allow its exploitation in a more targeted manner. Here, we performed an association-genetic study in a customized worldwide collection of spring barley accessions for candidate genes of race-NR to the powdery mildew fungus Blumeria graminis f. sp. hordei (Bgh) and combined data with results from QTL mapping as well as functional-genomics approaches. This led to the identification of 11 associated genes with converging evidence for an important role in race-NR in the presence of the Mlo gene for basal susceptibility. Outstanding in this respect was the gene encoding the transcription factor WRKY2. The results suggest that unlocking plant genetic resources and integrating functional-genomic with genetic approaches can accelerate the discovery of genes underlying race-NR in barley and other crop plants.
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Affiliation(s)
- Annika Spies
- Leibniz-Institute of Plant Genetics and Crop Plant ResearchGatersleben, Germany
| | | | | | - Jeyaraman Rajaraman
- Leibniz-Institute of Plant Genetics and Crop Plant ResearchGatersleben, Germany
| | - Axel Himmelbach
- Leibniz-Institute of Plant Genetics and Crop Plant ResearchGatersleben, Germany
| | | | - Patrick Schweizer
- Leibniz-Institute of Plant Genetics and Crop Plant ResearchGatersleben, Germany
- *Correspondence: Patrick Schweizer, Leibniz-Institute of Plant Genetics and Crop Plant Research, Corrensstrasse 3, 06466 Gatersleben, Germany. e-mail:
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Baum T, Navarro-Quezada A, Knogge W, Douchkov D, Schweizer P, Seiffert U. HyphArea--automated analysis of spatiotemporal fungal patterns. J Plant Physiol 2011; 168:72-8. [PMID: 20863593 DOI: 10.1016/j.jplph.2010.08.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2010] [Revised: 08/20/2010] [Accepted: 08/20/2010] [Indexed: 05/20/2023]
Abstract
In phytopathology quantitative measurements are rarely used to assess crop plant disease symptoms. Instead, a qualitative valuation by eye is often the method of choice. In order to close the gap between subjective human inspection and objective quantitative results, the development of an automated analysis system that is capable of recognizing and characterizing the growth patterns of fungal hyphae in micrograph images was developed. This system should enable the efficient screening of different host-pathogen combinations (e.g., barley-Blumeria graminis, barley-Rhynchosporium secalis) using different microscopy technologies (e.g., bright field, fluorescence). An image segmentation algorithm was developed for gray-scale image data that achieved good results with several microscope imaging protocols. Furthermore, adaptability towards different host-pathogen systems was obtained by using a classification that is based on a genetic algorithm. The developed software system was named HyphArea, since the quantification of the area covered by a hyphal colony is the basic task and prerequisite for all further morphological and statistical analyses in this context. By means of a typical use case the utilization and basic properties of HyphArea could be demonstrated. It was possible to detect statistically significant differences between the growth of an R. secalis wild-type strain and a virulence mutant.
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Affiliation(s)
- Tobias Baum
- Fraunhofer-Institute for Factory Operation and Automation (IFF), Biosystems Engineering, Sandtorstrasse 22, Magdeburg, Germany.
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Douchkov D, Johrde A, Nowara D, Himmelbach A, Lueck S, Niks R, Schweizer P. Convergent evidence for a role of WIR1 proteins during the interaction of barley with the powdery mildew fungus Blumeria graminis. J Plant Physiol 2011; 168:20-29. [PMID: 20709427 DOI: 10.1016/j.jplph.2010.07.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2010] [Revised: 06/17/2010] [Accepted: 07/15/2010] [Indexed: 05/29/2023]
Abstract
Pathogen attack triggers a multifaceted defence response in plants that includes the accumulation of pathogenesis-related proteins and their corresponding transcripts. One of these transcripts encodes for WIR1, a small glycine- and proline-rich protein of unknown function that appears to be specific to grass species. Here we describe members of the HvWIR1 multigene family of barley with respect to phylogenetic relationship, transcript regulation, co-localization with quantitative trait loci for resistance to the barley powdery mildew fungus Blumeria graminis (DC.) E.O. Speer f.sp. hordei, the association of single nucleotide polymorphisms or gene haplotypes with resistance, as well as phenotypic effects of gene silencing by RNAi. HvWIR1 is encoded by a multigene family of moderate complexity that splits up into two major clades, one of those being also represented by previously described cDNA sequences from wheat. All analysed WIR1 transcripts accumulated in response to powdery mildew attack in leaves and all mapped WIR1 genes were associated with quantitative trait loci for resistance to B. graminis. Moreover, single nucleotide polymorphisms or haplotypes of WIR1 members were associated with quantitative resistance of barley to B. graminis, and transient WIR1 gene silencing affected the interaction of epidermal cells with the pathogen. The presented data provide convergent evidence for a role of the HvWIR1a gene and possibly other family members, during the interaction of barley with B. graminis.
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Affiliation(s)
- Dimitar Douchkov
- Leibniz-Institute of Plant Genetics and Crop Plant Research, Corrensstrasse 3, Gatersleben, Germany
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Hückelhoven R, Schweizer P. Quantitative disease resistance and fungal pathogenicity in Triticeae. J Plant Physiol 2011; 168:1-2. [PMID: 20943286 DOI: 10.1016/j.jplph.2010.09.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2010] [Accepted: 09/13/2010] [Indexed: 05/30/2023]
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Sečenji M, Lendvai Á, Miskolczi P, Kocsy G, Gallé Á, Szucs A, Hoffmann B, Sárvári É, Schweizer P, Stein N, Dudits D, Györgyey J. Differences in root functions during long-term drought adaptation: comparison of active gene sets of two wheat genotypes. Plant Biol (Stuttg) 2010; 12:871-82. [PMID: 21040302 DOI: 10.1111/j.1438-8677.2009.00295.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
In an attempt to shed light on the role of root systems in differential responses of wheat genotypes to long-term water limitation, transcriptional differences between two wheat genotypes (Triticum aestivum L., cv. Plainsman V and landrace Kobomugi) were identified during adaptation to moderate water stress at the tillering stage. Differences in organ sizes, water-use efficiency and seed production were detected in plants grown in soil, and root functions were characterised by expression profiling. The molecular genetic background of the behaviour of the two genotypes during this stress was revealed using a cDNA macroarray for transcript profiling of the roots. During a 4-week period of moderate water deficit, a set of up-regulated genes displaying transiently increased expression was identified in young plantlets, mostly in the second week in the roots of Kobomugi, while transcript levels remained constantly high in roots of Plainsman V. These genes encode proteins with various functions, such as transport, protein metabolism, osmoprotectant biosynthesis, cell wall biogenesis and detoxification, and also regulatory proteins. Oxidoreductases, peroxidases and cell wall-related genes were induced significantly only in Plainsman V, while induction of stress- and defence-related genes was more pronounced in Kobomugi. Real-time qPCR analysis of selected members of the glutathione S-transferase gene family revealed differences in regulation of family members in the two genotypes and confirmed the macroarray results. The TaGSTZ gene was stress-activated only in the roots of Kobomugi.
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Affiliation(s)
- M Sečenji
- Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary
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Eichmann R, Bischof M, Weis C, Shaw J, Lacomme C, Schweizer P, Duchkov D, Hensel G, Kumlehn J, Hückelhoven R. BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Mol Plant Microbe Interact 2010; 23:1217-27. [PMID: 20687811 DOI: 10.1094/mpmi-23-9-1217] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
BAX INHIBITOR-1 (BI-1) is one of the few proteins known to have cross-kingdom conserved functions in negative control of programmed cell death. Additionally, barley BI-1 (HvBI-1) suppresses defense responses and basal resistance to the powdery mildew fungus Blumeria graminis f. sp. hordei and enhances resistance to cell death-provoking fungi when overexpressed in barley. Downregulation of HvBI-1 by transient-induced gene silencing or virus-induced gene silencing limited susceptibility to B. graminis f. sp. hordei, suggesting that HvBI-1 is a susceptibility factor toward powdery mildew. Transient silencing of BI-1 did not limit supersusceptibility induced by overexpression of MLO. Transgenic barley plants harboring an HvBI-1 RNA interference (RNAi) construct displayed lower levels of HvBI-1 transcripts and were less susceptible to powdery mildew than wild-type plants. At the cellular level, HvBI-1 RNAi plants had enhanced resistance to penetration by B. graminis f. sp. hordei. These data support a function of BI-1 in modulating cell-wall-associated defense and in establishing full compatibility of B. graminis f. sp. hordei with barley.
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Affiliation(s)
- Ruth Eichmann
- Lehrstuhl für Phytopathologie, Technische Universität München, Emil-Ramann-Strasse 2, D-85350 Freising-Weihenstephan, Germany.
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Nowara D, Gay A, Lacomme C, Shaw J, Ridout C, Douchkov D, Hensel G, Kumlehn J, Schweizer P. HIGS: host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell 2010; 22:3130-41. [PMID: 20884801 PMCID: PMC2965548 DOI: 10.1105/tpc.110.077040] [Citation(s) in RCA: 401] [Impact Index Per Article: 28.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Powdery mildew fungi are obligate biotrophic pathogens that only grow on living hosts and cause damage in thousands of plant species. Despite their agronomical importance, little direct functional evidence for genes of pathogenicity and virulence is currently available because mutagenesis and transformation protocols are lacking. Here, we show that the accumulation in barley (Hordeum vulgare) and wheat (Triticum aestivum) of double-stranded or antisense RNA targeting fungal transcripts affects the development of the powdery mildew fungus Blumeria graminis. Proof of concept for host-induced gene silencing was obtained by silencing the effector gene Avra10, which resulted in reduced fungal development in the absence, but not in the presence, of the matching resistance gene Mla10. The fungus could be rescued from the silencing of Avra10 by the transient expression of a synthetic gene that was resistant to RNA interference (RNAi) due to silent point mutations. The results suggest traffic of RNA molecules from host plants into B. graminis and may lead to an RNAi-based crop protection strategy against fungal pathogens.
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Affiliation(s)
- Daniela Nowara
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Alexandra Gay
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | | | - Jane Shaw
- Scottish Crop Research Institute, Invergowrie, DD2 5DA Dundee, Scotland
| | | | - Dimitar Douchkov
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Götz Hensel
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Jochen Kumlehn
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Patrick Schweizer
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
- Address correspondence to
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Zellerhoff N, Himmelbach A, Dong W, Bieri S, Schaffrath U, Schweizer P. Nonhost resistance of barley to different fungal pathogens is associated with largely distinct, quantitative transcriptional responses. Plant Physiol 2010; 152:2053-66. [PMID: 20172964 PMCID: PMC2850024 DOI: 10.1104/pp.109.151829] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2009] [Accepted: 02/11/2010] [Indexed: 05/19/2023]
Abstract
Nonhost resistance protects plants against attack by the vast majority of potential pathogens, including phytopathogenic fungi. Despite its high biological importance, the molecular architecture of nonhost resistance has remained largely unexplored. Here, we describe the transcriptional responses of one particular genotype of barley (Hordeum vulgare subsp. vulgare 'Ingrid') to three different pairs of adapted (host) and nonadapted (nonhost) isolates of fungal pathogens, which belong to the genera Blumeria (powdery mildew), Puccinia (rust), and Magnaporthe (blast). Nonhost resistance against each of these pathogens was associated with changes in transcript abundance of distinct sets of nonhost-specific genes, although general (not nonhost-associated) transcriptional responses to the different pathogens overlapped considerably. The powdery mildew- and blast-induced differences in transcript abundance between host and nonhost interactions were significantly correlated with differences between a near-isogenic pair of barley lines that carry either the Mlo wild-type allele or the mutated mlo5 allele, which mediates basal resistance to powdery mildew. Moreover, during the interactions of barley with the different host or nonhost pathogens, similar patterns of overrepresented and underrepresented functional categories of genes were found. The results suggest that nonhost resistance and basal host defense of barley are functionally related and that nonhost resistance to different fungal pathogens is associated with more robust regulation of complex but largely nonoverlapping sets of pathogen-responsive genes involved in similar metabolic or signaling pathways.
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Himmelbach A, Liu L, Zierold U, Altschmied L, Maucher H, Beier F, Müller D, Hensel G, Heise A, Schützendübel A, Kumlehn J, Schweizer P. Promoters of the barley germin-like GER4 gene cluster enable strong transgene expression in response to pathogen attack. Plant Cell 2010; 22:937-52. [PMID: 20305123 PMCID: PMC2861458 DOI: 10.1105/tpc.109.067934] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Immunity of plants triggered by pathogen-associated molecular patterns (PAMPs) is based on the execution of an evolutionarily conserved defense response that includes the accumulation of pathogenesis-related (PR) proteins as well as multiple other defenses. The most abundant PR transcript of barley (Hordeum vulgare) leaf epidermis attacked by the powdery mildew fungus Blumeria graminis f. sp hordei encodes the germin-like protein GER4, which has superoxide dismutase activity and functions in PAMP-triggered immunity. Here, we show that barley GER4 is encoded by a dense cluster of tandemly duplicated genes (GER4a-h) that underwent several cycles of duplication. The genomic organization of the GER4 locus also provides evidence for repeated gene birth and death cycles. The GER4 promoters contain multiple WRKY factor binding sites (W-boxes) preferentially located in promoter fragments that were exchanged between subfamily members by gene conversion. Mutational analysis of TATA-box proximal W-boxes used GER4c promoter-beta-glucuronidase fusions to reveal their enhancing effects and functional redundancy on pathogen-induced promoter activity. The data suggest enhanced transcript dosage as an evolutionary driving force for the local expansion and functional redundancy of the GER4 locus. In addition, the GER4c promoter provides a tool to study signal transduction of PAMP-triggered immunity and to engineer strictly localized and pathogen-regulated disease resistance in transgenic cereal crops.
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Affiliation(s)
- Axel Himmelbach
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Luo Liu
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Uwe Zierold
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Lothar Altschmied
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Helmut Maucher
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Franziska Beier
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Doreen Müller
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Götz Hensel
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Andreas Heise
- BASF Plant Science Company, D-67117 Limburgerhof, Germany
| | - Andres Schützendübel
- Division of Plant Pathology and Crop Protection, Department of Crop Sciences, University of Göttingen, D-37077 Göttingen, Germany
| | - Jochen Kumlehn
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
| | - Patrick Schweizer
- Leibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany
- Address correspondence to
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Aghnoum R, Marcel TC, Johrde A, Pecchioni N, Schweizer P, Niks RE. Basal host resistance of barley to powdery mildew: connecting quantitative trait Loci and candidate genes. Mol Plant Microbe Interact 2010; 23:91-102. [PMID: 19958142 DOI: 10.1094/mpmi-23-1-0091] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The basal resistance of barley to powdery mildew (Blumeria graminis f. sp. hordei) is a quantitatively inherited trait that is based on nonhypersensitive mechanisms of defense. A functional genomic approach indicates that many plant candidate genes are involved in the defense against formation of fungal haustoria. It is not known which of these candidate genes have allelic variation that contributes to the natural variation in powdery mildew resistance, because many of them may be highly conserved within the barley species and may act downstream of the basal resistance reaction. Twenty-two expressed sequence tag or cDNA clone sequences that are likely to play a role in the barley-Blumeria interaction based on transcriptional profiling, gene silencing, or overexpression data, as well as mlo, Ror1, and Ror2, were mapped and considered candidate genes for contribution to basal resistance. We mapped the quantitative trait loci (QTL) for powdery mildew resistance in six mapping populations of barley at seedling and adult plant stages and developed an improved high-density integrated genetic map containing 6,990 markers for comparing QTL and candidate gene positions over mapping populations. We mapped 12 QTL at seedling stage and 13 QTL at adult plant stage, of which four were in common between the two developmental stages. Six of the candidate genes showed coincidence in their map positions with the QTL identified for basal resistance to powdery mildew. This co-localization justifies giving priority to those six candidate genes to validate them as being responsible for the phenotypic effects of the QTL for basal resistance.
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Affiliation(s)
- Reza Aghnoum
- Laboratory of Plant Breeding, Graduate School for Experimental Plant Sciences, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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Erbel R, Meyer J, Schweizer P, Lambertz H, Voelker W, Effert S. Haemodynamic effects of prenalterol in patients with severe congestive heart failure--NYHA III-IV. Acta Med Scand Suppl 2009; 659:169-80. [PMID: 6127887 DOI: 10.1111/j.0954-6820.1982.tb00845.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
In 12 patients with severe congestive heart failure due to ischaemic heart disease (n = 6) and due to congestive cardiomyopathy (n = 6) the haemodynamic effects of a new beta 1-agonist, prenalterol, were studied. Left ventricular (LV) function was studied before and 20 min after infusion of 12 mg prenalterol. Heart rate was kept constant by atrial pacing at a rate of 100 min-1 unless intrinsic heart rate exceeded it. As a sign of positive inotropic support, prenalterol enhanced peak rate of LV pressure development (dP/dt) from 1160 +/- 100 mm Hg/s to 1590 +/- 190 mm Hg/s (p less than 0.005). In the mean LV end-diastolic and end-systolic volume determined by cineventriculography and two-dimensional echocardiography decreased. LV stroke work index measured with both methods increased with 4 ml/m and 5 ml/m, respectively (p less than 0.02). LV ejection fraction was improved by 6% and 8% (p less than 0.005). Increase of peak fall of left ventricular pressure (dP/dt) (1050 +/- 60 mm Hg/s to 1270 +/- 100 mm Hg/s, p less than 0.005) and shortening of time constant (T) of pressure fall from 64.5 +/- 5.0 ms to 44.5 +/- 6.0 ms (p less than 0.005) demonstrated the improved LV relaxation. Analysis of LV volume and myocardial compliance revealed decrease of left ventricular stiffness. Thus, LV filling pressure was reduced from 22.1 +/- 4 mm Hg to 14 +/- 3.5 mm Hg (p less than 0.001). Pressure volume analysis showed a significant increase of LV power and work, as well as a slight decrease of wall stress. Our study could demonstrate, even in patients with severe heart failure, a sustained positive inotropic effect of prenalterol leading to an improved left ventricular contractility, relaxation and compliance. LV power and work was enhanced. The increase of oxygen demand seemed to be counterbalanced by an improved perfusion of particularly subendocardial layers indicated by an increased transmyocardial pressure gradient.
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Krijger JJ, Horbach R, Behr M, Schweizer P, Deising HB, Wirsel SGR. The yeast signal sequence trap identifies secreted proteins of the hemibiotrophic corn pathogen Colletotrichum graminicola. Mol Plant Microbe Interact 2008; 21:1325-1336. [PMID: 18785828 DOI: 10.1094/mpmi-21-10-1325] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The hemibiotroph Colletotrichum graminicola is the causal agent of stem rot and leaf anthracnose on Zea mays. Following penetration of epidermal cells, the fungus enters a short biotrophic phase, followed by a destructive necrotrophic phase of pathogenesis. During both phases, secreted fungal proteins are supposed to determine progress and success of the infection. To identify genes encoding such proteins, we constructed a yeast signal sequence trap (YSST) cDNA-library from RNA extracted from mycelium grown in vitro on corn cell walls and leaf extract. Of the 103 identified unigenes, 50 showed significant similarities to genes with a reported function, 25 sequences were similar to genes without a known function, and 28 sequences showed no similarity to entries in the databases. Macroarray hybridization and quantitative reverse-transcriptase polymerase chain reaction confirmed that most genes identified by the YSST screen are expressed in planta. Other than some genes that were constantly expressed, a larger set showed peaks of transcript abundances at specific phases of pathogenesis. Another set exhibited biphasic expression with peaks at the biotrophic and necrotrophic phase. Transcript analyses of in vitro-grown cultures revealed that several of the genes identified by the YSST screen were induced by the addition of corn leaf components, indicating that host-derived factors may have mimicked the host milieu.
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Affiliation(s)
- Jorrit-Jan Krijger
- Institut fur Agrar-und Ernahrungswissenschaften, Martin-Luther-Universitat Halle-Wittenberg, Halle, Germany
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Johrde A, Schweizer P. A class III peroxidase specifically expressed in pathogen-attacked barley epidermis contributes to basal resistance. Mol Plant Pathol 2008; 9:687-96. [PMID: 19018997 PMCID: PMC6640314 DOI: 10.1111/j.1364-3703.2008.00494.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Higher plants possess large multigene families encoding secreted class III peroxidase (Prx) proteins. In barley, two Prx cDNAs encoding HvPrx07 and HvPrx08 have been isolated and characterized to some extent with respect to a resistance-mediating function upon attack by the powdery-mildew fungus Blumeria graminis f.sp. hordei (Bgh). Here we present evidence for the tissue-specific accumulation of a new Prx mRNA, HvPrx40, in Bgh-attacked epidermis of barley (Hordeum vulgare). The encoded protein is predicted to be secreted into the apoplastic space of epidermal cells due to the absence of a C-terminal extension, which distinguishes it from other Prx proteins reported to accumulate in leaf epidermis. Transient overexpression of HvPrx40 enhanced the resistance of wheat (Triticum aestivum) and barley against Blumeria graminis f.sp. tritici (wheat powdery mildew) and Bgh, respectively. These findings were complemented by transient-induced gene silencing showing hypersusceptibility of barley leaf epidermal cells to Bgh. The local accumulation of oxidized 3,3-diaminobenzidine that reflects H2O2 production at sites of attempted fungal penetration was not reduced in HvPrx40-silenced cells, suggesting a role of this peroxidase other than the production of reactive oxygen species.
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Affiliation(s)
- Annika Johrde
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, D-06466 Gatersleben, Germany
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Busch C, Oppitz M, Wehrmann M, Schweizer P, Drews U. Immunohistochemical localization of nanog and Oct4 in stem cell compartments of human sacrococcygeal teratomas. Histopathology 2008; 52:717-30. [PMID: 18439155 DOI: 10.1111/j.1365-2559.2008.03017.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
AIMS To study the range of differentiation and presence of cells positive for stem cell markers in 20 sacrococcygeal teratomas (SCTs) which were consecutively operated on between 1990 and 2000 in the Department of Paediatric Surgery in Tübingen, Germany. METHODS AND RESULTS Preserved paraffin-embedded material was re-evaluated. In addition to tissues of various organs, caudal organ structures not described before were identified, such as colon with pancreas originating from colonic crypts, Fallopian tube and vaginal epithelia. The derivation of the latter was confirmed by Müllerian duct specific CA125 and CA19-9 antibodies. The expression of stem cell markers was studied with antibodies against nanog, Oct4, SSEA-4, nestin and subtype M3 muscarinic receptors. Cells positive for these markers were encountered in immature end buds and capillary sprouts, and as single cells in neural tissue, gonadal structures, hairs and in the stem cell niches of differentiated epithelia. CONCLUSIONS Our data indicate that SCTs of the newborn arise from remnants of the epiblast-like tail bud blastema and demonstrate that they contain cells positive for embryonic stem cell markers and may represent a novel source for human embryonic stem cells.
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Affiliation(s)
- C Busch
- Department of Dermatology, University of Tübingen, Tübingen, Germany
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Essen RV, Uebis R, Schmidt W, Dörr R, Merx W, Meyer J, Effert S, Schweizer P, Erbel R, Bardos P, Minale C, Messmer BJ. Intrakoronare Streptokinase beim akuten Herzinfarkt: Erfahrungen bei 461 Patienten*. Dtsch Med Wochenschr 2008. [DOI: 10.1055/s-2008-1068866] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ihlow A, Schweizer P, Seiffert U. A high-throughput screening system for barley/powdery mildew interactions based on automated analysis of light micrographs. BMC Plant Biol 2008; 8:6. [PMID: 18215267 PMCID: PMC2262080 DOI: 10.1186/1471-2229-8-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2007] [Accepted: 01/23/2008] [Indexed: 05/03/2023]
Abstract
BACKGROUND To find candidate genes that potentially influence the susceptibility or resistance of crop plants to powdery mildew fungi, an assay system based on transient-induced gene silencing (TIGS) as well as transient over-expression in single epidermal cells of barley has been developed. However, this system relies on quantitative microscopic analysis of the barley/powdery mildew interaction and will only become a high-throughput tool of phenomics upon automation of the most time-consuming steps. RESULTS We have developed a high-throughput screening system based on a motorized microscope which evaluates the specimens fully automatically. A large-scale double-blind verification of the system showed an excellent agreement of manual and automated analysis and proved the system to work dependably. Furthermore, in a series of bombardment experiments an RNAi construct targeting the Mlo gene was included, which is expected to phenocopy resistance mediated by recessive loss-of-function alleles such as mlo5. In most cases, the automated analysis system recorded a shift towards resistance upon RNAi of Mlo, thus providing proof of concept for its usefulness in detecting gene-target effects. CONCLUSION Besides saving labor and enabling a screening of thousands of candidate genes, this system offers continuous operation of expensive laboratory equipment and provides a less subjective analysis as well as a complete and enduring documentation of the experimental raw data in terms of digital images. In general, it proves the concept of enabling available microscope hardware to handle challenging screening tasks fully automatically.
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Affiliation(s)
- Alexander Ihlow
- Pattern Recognition Group, IPK Gatersleben, Corrensstr. 3, D-06466 Gatersleben, Germany
- Transcriptome Analysis Group, IPK Gatersleben, Corrensstr. 3, D-06466 Gatersleben, Germany
| | - Patrick Schweizer
- Transcriptome Analysis Group, IPK Gatersleben, Corrensstr. 3, D-06466 Gatersleben, Germany
| | - Udo Seiffert
- Pattern Recognition Group, IPK Gatersleben, Corrensstr. 3, D-06466 Gatersleben, Germany
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