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Dong T, Ye H, Wang W, Zhang Y, Han G, Peng F, Lou CW, Chi S, Liu Y, Liu C, Lin JH. A sustainable layered nanofiber/sheet aerogels enabling repeated life cycles for effective oil/water separation. J Hazard Mater 2023; 454:131474. [PMID: 37116327 DOI: 10.1016/j.jhazmat.2023.131474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 04/06/2023] [Accepted: 04/21/2023] [Indexed: 05/19/2023]
Abstract
Discarded oil-containing absorbents, which has been used in handling oil spills, are tricky to deal with and have rose global environmental concerns regarding release of microplastics. Herein, we developed a facile strategy to fabricate sustainable absorbents by a gas-inflating method, through which 2D electrospinning polycaprolactone nanofiber membranes were directly inflated into highly porous 3D nanofiber/sheet aerogels with layered long fiber structure. The membranes were inflated rapidly from a baseline porosity of 81.98% into 97.36-99.42% in 10-60 min. The obtained aerogels were further wrapped with -CH3 ended siloxane structures using CH3SiCl3. This hydrophobic absorbent (CA ≈ 145°) could rapidly trap oils from water with sorption range of 25.60-42.13 g/g and be recycled by simple squeeze due to its mechanical robustness. As-prepared aerogels also showed high separation efficiency to separate oils from both oil/water mixtures and oil-in-water emulsions (>96.4%). Interestingly, the oil-loaded absorbent after cleaning with absolute ethanol could be re-dissolved in selected solvents and promptly reconstituted by re-electrospinning and gas-inflation. The reconstituted aerogels were used as fire-new oil absorbents for repeated life cycles. The novel design, low cost and sustainability of the absorbent provides an efficient and environmentally-friendly solution for handling oil spills.
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Affiliation(s)
- Ting Dong
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China.
| | - Huabiao Ye
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Wenhui Wang
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Yuanming Zhang
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Guangting Han
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Fudi Peng
- Fujian Aton Advanced Materials Science and Technology Co., Ltd, Fujian 350304, PR China
| | - Ching-Wen Lou
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Department of Bioinformatics and Medical Engineering, Asia University, Taichung City 413305, Taiwan; Department of Medical Research, China Medical University Hospital, China Medical University, Taichung City 404333, Taiwan
| | - Shan Chi
- Bestee Material Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Yanming Liu
- Sinotech Academy of Textile Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Cui Liu
- Qingdao Byherb New Material Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Jia-Horng Lin
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Department of Fiber and Composite Materials, Feng Chia University, Taichung City 407102, Taiwan; School of Chinese Medicine, China Medical University, Taichung City 404333, Taiwan.
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Wang W, Lin JH, Guo J, Sun R, Han G, Peng F, Chi S, Dong T. Biomass Chitosan-Based Tubular/Sheet Superhydrophobic Aerogels Enable Efficient Oil/Water Separation. Gels 2023; 9:gels9040346. [PMID: 37102958 PMCID: PMC10137560 DOI: 10.3390/gels9040346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 04/12/2023] [Accepted: 04/15/2023] [Indexed: 04/28/2023] Open
Abstract
Water pollution, which is caused by leakage of oily substances, has been recognized as one of the most serious global environmental pollutions endangering the ecosystem. High-quality porous materials with superwettability, which are typically constructed in the form of aerogels, hold huge potential in the field of adsorption and removal of oily substances form water. Herein, we developed a facile strategy to fabricate a novel biomass absorbent with a layered tubular/sheet structure for efficient oil/water separation. The aerogels were fabricated by assembling hollow poplar catkin fiber into chitosan sheets using a directional freeze-drying method. The obtained aerogels were further wrapped with -CH3-ended siloxane structures using CH3SiCl3. This superhydrophobic aerogel (CA ≈ 154 ± 0.4°) could rapidly trap and remove oils from water with a large sorption range of 33.06-73.22 g/g. The aerogel facilitated stable oil recovery (90.07-92.34%) by squeezing after 10 sorption-desorption cycles because of its mechanical robustness (91.76% strain remaining after 50 compress-release cycles). The novel design, low cost, and sustainability of the aerogel provide an efficient and environmentally friendly solution for handling oil spills.
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Affiliation(s)
- Wenhui Wang
- College of Textile and Clothing, Qingdao University, 308, Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Jia-Horng Lin
- College of Textile and Clothing, Qingdao University, 308, Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Department of Fiber and Composite Materials, Feng Chia University, Taichung City 407102, Taiwan
- School of Chinese Medicine, China Medical University, Taichung City 404333, Taiwan
| | - Jiali Guo
- College of Textile and Clothing, Qingdao University, 308, Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Rui Sun
- College of Textile and Clothing, Qingdao University, 308, Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Guangting Han
- Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
| | - Fudi Peng
- Fujian Aton Advanced Materials Science and Technology Co., Ltd., Fujian 350304, China
| | - Shan Chi
- Bestee Material Co., Ltd., Qingdao 266001, China
| | - Ting Dong
- College of Textile and Clothing, Qingdao University, 308, Ningxia Road, Qingdao 266071, China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
- Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao 266071, China
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Dong T, Liu Y, Tian N, Zhang Y, Han G, Peng F, Lou CW, Chi S, Liu Y, Liu C, Lin JH. Photothermal and Concus Finn capillary assisted superhydrophobic fibrous network enabling instant viscous oil transport for crude oil cleanup. J Hazard Mater 2023; 443:130193. [PMID: 36265385 DOI: 10.1016/j.jhazmat.2022.130193] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/29/2022] [Accepted: 10/12/2022] [Indexed: 06/16/2023]
Abstract
Rapid and effective removal of highly viscous oil spills from the sea remains a great challenge globally. Superhydrophobic materials are attractive candidates for handling oil spills, but they are restrained to recover oils with low viscosity exclusively. Herein, we report a novel polypyrrole wrapped superhydrophobic fibrous network using cross-shaped polyester fibers as starting blocks. The polypyrrole coating enables the absorbent to convert light to heat, ensuring that the viscosity of heavy oils in the proximity can be easily controlled. In the meanwhile, the special structure of the starting fibers initiates Concus Finn (CFin) capillary allowing instant oil transport in the network. When the absorbent is exposed to light oils (0-500 mPa.s), the oils can be transported instantly via CFin capillary. Interestingly, under synergistic effect of light-to-heat conversion and CFin capillary, a drawing-sticking crude oil strip (105 mPa.s) is sucked instantly against gravity by the absorbent. The absorbent is successfully applied to efficiently separate both oil/water mixtures and oil/water emulsions (efficiency > 99%). Such absorbent can absorb 62.99-74.23 g/g light oils on average and up to 123.3 g/g crude oil under 0-2 sun illumination, holding a huge potential in managing oil spills.
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Affiliation(s)
- Ting Dong
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China.
| | - Yanhui Liu
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Na Tian
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Yuanming Zhang
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Guangting Han
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, 308 Ningxia Road, Qingdao, PR China
| | - Fudi Peng
- Fujian Aton Advanced Materials Science and Technology Co., Ltd, Fujian 350304, PR China
| | - Ching-Wen Lou
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Department of Bioinformatics and Medical Engineering, Asia University, Taichung City 413305, Taiwan; College of Material and Chemical Engineering, Minjiang University, Fuzhou 350108, PR China
| | - Shan Chi
- Bestee Material Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Yanming Liu
- Sinotech Academy of Textile Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Cui Liu
- Qingdao Byherb New Material Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Jia-Horng Lin
- College of Textile and Clothing, Qingdao University, 308 Ningxia Road, Qingdao, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, 308 Ningxia Road, Qingdao, PR China; College of Material and Chemical Engineering, Minjiang University, Fuzhou 350108, PR China; Advanced Medical Care and Protection Technology Research Center, Department of Fiber and Composite Materials, Feng Chia University, Taichung City 407102, Taiwan.
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DeRosa PA, Annitsakis D, Chi S, Akselrod H. Meningitis Multiplex-PCR: 3-Year Study of Cost and Correlation With Traditional Cerebrospinal Fluid Analysis. Am J Clin Pathol 2022. [DOI: 10.1093/ajcp/aqac126.284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Abstract
Introduction/Objective
Physicians often rely on Cerebrospinal Fluid (CSF) cytology, chemistry, and culture. While cheap, these methods lack high sensitivity/specificity or have long turnaround times. PCR evaluation of CSF has become more common and is often touted as a way to save money, decrease turnaround times and quickly target antibiotics. PCR systems may cost $200,000, with $150 in disposables per test. As a new, fast, test it may be over ordered.
Methods/Case Report
Case-control study using retrospective chart review. All adults, aged 18 and over, who had undergone both PCR based testing and cytochemical testing between 3/1/2017 and 9/7/2019 were included.
Results (if a Case Study enter NA)
From 3/1/2017-9/7/2019, there were 381 available PCR results for adult GWUH patients. Demographic data showed that the patient sample was majority black (195/320, 60.94%), had an average age of 49.8 ± 17.2, and was majority female (172/320, 53.75%). The PCR results were 85.31% negative (273/320) and the CSF cultures were 94.38% negative. The most common PCR positive organism was Varicella zoster virus (11/47 positive results) and the most common CSF culture organism was Streptococcus pneumoniae (5/18 positive cultures).
Conclusion
In a population with clinical symptoms and at least 1 abnormality on CSF analysis, 6.5 tests were run for every positive PCR test. No single variable was found to significantly predict PCR results. Within a high initial cost, a disposable cost of $150 per test and detection rate of 14.7%, the cost to detect a single positive test by PCR could approach $4,500. PCR should be used judiciously following history, physical exam and standard CSF workup, rather than as a screening tool.
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Affiliation(s)
- P A DeRosa
- Pathology, University of Maryland Medical Center , Baltimore, Maryland , United States
| | - D Annitsakis
- Pathology, George Washington University , DC, District of Columbia , United States
| | - S Chi
- Pathology, George Washington University , DC, District of Columbia , United States
| | - H Akselrod
- Pathology, George Washington University , DC, District of Columbia , United States
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Dong T, Hua Y, Han G, Zhang Y, Chi S, Liu Y, Liu C, Lou CW, Lin JH. Biomimetic Fibrous Leaf-Vein Membrane Enabling Unidirectional Water Penetration and Effective Antibacterial PM Filtration. ACS Appl Mater Interfaces 2022; 14:37192-37203. [PMID: 35916495 DOI: 10.1021/acsami.2c10254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Air pollution induced by pathogenic particulate matter (PM) has posed a serious threat to public health worldwide. Advanced air filters are thus required, not only exhibiting high PM capture efficiency, low breathing resistance, and high internal moisture transferring performance but also isolating and inactivating external pathogenic aerosols. In this study, we demonstrated a facile approach to construct a biomimetic fibrous leaf-vein membrane with unidirectional water penetration and effective antibacterial PM filtration by one-step electrospinning of poly(vinylidene fluoride) (PVDF)-based multilayer nanofibers. With ultrathin fibers penetrating the skeletal framework of bimodal thick fibers, the membranes showed gradient interconnected porous structures and achieved a highly efficient and stable (in an acid and alkali environment) PM0.3 interception (>99.98%) with low air drag (51-71 Pa). In addition, the gradient narrow pores of the membranes contributed to a gradient higher hydrophilicity. The subsequent unidirectional water motion effectively isolates pathogenic aerosols typically generated by external individuals or ultrafast water penetration from the inverse face. Moreover, the membranes demonstrated an antibacterial efficacy (>99.99%) in a 5 min contact, inactivating the intercepted airborne pathogens efficiently. The test results proved that the proposed membranes were promising advanced air filters for respirator applications.
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Affiliation(s)
- Ting Dong
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, P. R. China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
- Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
| | - Yue Hua
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, P. R. China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
| | - Guangting Han
- Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
| | - Yuanming Zhang
- Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
| | - Shan Chi
- Bestee Material Co., Ltd., Qingdao, Shandong 266001, P. R. China
| | - Yanming Liu
- Sinotech Academy of Textile Co., Ltd., Qingdao, Shandong 266001, P. R. China
| | - Cui Liu
- Qingdao Byherb New Material Co., Ltd., Qingdao, Shandong 266001, P. R. China
| | - Ching-Wen Lou
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, P. R. China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
- Department of Bioinformatics and Medical Engineering, Asia University, Taichung City 413305, Taiwan
- Department of Medical Research, China Medical University Hospital, China Medical University, Taichung City 404333, Taiwan
- Innovation Platform of Intelligent and Energy-Saving Textiles, School of Textile Science and Engineering, Tiangong University, Tianjin 300387, P. R. China
- College of Material and Chemical Engineering, Minjiang University, Fuzhou 350108, P. R. China
| | - Jia-Horng Lin
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, P. R. China
- Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, P. R. China
- Advanced Medical Care and Protection Technology Research Center, Department of Fiber and Composite Materials, Feng Chia University, Taichung City 407102, Taiwan
- Department of Medical Research, China Medical University Hospital, China Medical University, Taichung City 404333, Taiwan
- Innovation Platform of Intelligent and Energy-Saving Textiles, School of Textile Science and Engineering, Tiangong University, Tianjin 300387, P. R. China
- College of Material and Chemical Engineering, Minjiang University, Fuzhou 350108, P. R. China
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Dong T, Tian N, Xu B, Huang X, Chi S, Liu Y, Lou CW, Lin JH. Biomass poplar catkin fiber-based superhydrophobic aerogel with tubular-lamellar interweaved neurons-like structure. J Hazard Mater 2022; 429:128290. [PMID: 35066226 DOI: 10.1016/j.jhazmat.2022.128290] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 01/07/2022] [Accepted: 01/14/2022] [Indexed: 06/14/2023]
Abstract
Superhydrophobic aerogels are attractive candidates in controlling oil spills. The major challenges for existing aerogels are the construction of mechanical endurance as well as accessible of building materials. Herein, a newfangled biomass superhydrophobic aerogel (M-PCF/CS) with both superior compressibility and oil caption speed is fabricated by assembling poplar catkin fiber (PCF) hollowed-out shell of 330 nm and chitosan (CS) into tubular-lamellar interweaved neurons-like structure. The resultant aerogels (porosity ~ 96.12%), with flexuous PCF as the elastic buffer and second-pore capillaries, exhibit large longitudinal and transverse compressibility, endurable fatigue tolerance, fast oil sorption rate with a capacity of 28.8-78.1 g/g at 5-25 s. In parallel, the aerogels are tolerant of NaCl, UV radiation, and organic solvents without superhydrophobic variation and a case of oil spill remediation via pump-supported experiment shows that the aerogels facilely achieve continuous oil recycling from seawater by 23052-43956 L·m-2·h-1. Furthermore, the resultant M-PCF/CS, with assistance of an oscillator, can be applied to separate oil/water emulsions with efficiency of 98.07-99.11%. The successful fabrication of this material provides a new design strategy for the construction of mechanically robust aerogels for speedy and economical cleanup of oil pollutants from water.
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Affiliation(s)
- Ting Dong
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, PR China; Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, #308 Ningxia Road, Qingdao 266071, P.R. China.
| | - Na Tian
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, PR China
| | - Bing Xu
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, PR China
| | - Xiaohua Huang
- Bestee Material (Qingdao) Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Shan Chi
- Bestee Material (Qingdao) Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Yanming Liu
- Bestee Material (Qingdao) Co., Ltd., Qingdao, Shandong 266001, PR China
| | - Ching-Wen Lou
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, PR China; Department of Bioinformatics and Medical Engineering, Asia University, Taichung 413305, Taiwan; Department of Medical Research, China Medical University Hospital, China Medical University, Taichung 404332, Taiwan; Innovation Platform of Intelligent and Energy-Saving Textiles, School of Textile Science and Engineering, Tiangong University, Tianjin 300387, PR China.
| | - Jia-Horng Lin
- College of Textile and Clothing, Qingdao University, #308, Ningxia Road, Qingdao 266071, PR China; Advanced Medical Care and Protection Technology Research Center, Qingdao University, #308 Ningxia Road, Qingdao 266071, PR China; Advanced Medical Care and Protection Technology Research Center, Department of Fiber and Composite Materials, Feng Chia University, Taichung 407802, Taiwan; Department of Medical Research, China Medical University Hospital, China Medical University, Taichung 404332, Taiwan; Innovation Platform of Intelligent and Energy-Saving Textiles, School of Textile Science and Engineering, Tiangong University, Tianjin 300387, PR China.
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Dong T, Hua Y, Zhu X, Huang X, Chi S, Liu Y, Lou CW, Lin JH. Highly Efficient and Sustainable PM Filtration Using Piezo Nanofibrous Membrane with Gradient Shrinking Porous Network. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2022.120753] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
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8
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Lanigan-Atkins T, Yang S, Niedziela JL, Bansal D, May AF, Puretzky AA, Lin JYY, Pajerowski DM, Hong T, Chi S, Ehlers G, Delaire O. Extended anharmonic collapse of phonon dispersions in SnS and SnSe. Nat Commun 2020; 11:4430. [PMID: 32887880 PMCID: PMC7474096 DOI: 10.1038/s41467-020-18121-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2020] [Accepted: 08/09/2020] [Indexed: 11/12/2022] Open
Abstract
The lattice dynamics and high-temperature structural transition in SnS and SnSe are investigated via inelastic neutron scattering, high-resolution Raman spectroscopy and anharmonic first-principles simulations. We uncover a spectacular, extreme softening and reconstruction of an entire manifold of low-energy acoustic and optic branches across a structural transition, reflecting strong directionality in bonding strength and anharmonicity. Further, our results solve a prior controversy by revealing the soft-mode mechanism of the phase transition that impacts thermal transport and thermoelectric efficiency. Our simulations of anharmonic phonon renormalization go beyond low-order perturbation theory and capture these striking effects, showing that the large phonon shifts directly affect the thermal conductivity by altering both the phonon scattering phase space and the group velocities. These results provide a detailed microscopic understanding of phase stability and thermal transport in technologically important materials, providing further insights on ways to control phonon propagation in thermoelectrics, photovoltaics, and other materials requiring thermal management.
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Affiliation(s)
- T Lanigan-Atkins
- Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, USA
| | - S Yang
- Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, USA
| | - J L Niedziela
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - D Bansal
- Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, USA
| | - A F May
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - A A Puretzky
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - J Y Y Lin
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - D M Pajerowski
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - T Hong
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - S Chi
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - G Ehlers
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - O Delaire
- Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, USA.
- Department of Physics, Duke University, Durham, NC, USA.
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Chi S, Wang G, Liu T, Wang X, Liu C, Jin Y, Yin H, Xu X, Yu J. Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica. Genomics Proteomics Bioinformatics 2020; 18:415-429. [PMID: 33248278 PMCID: PMC8242268 DOI: 10.1016/j.gpb.2018.12.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Revised: 10/20/2018] [Accepted: 12/14/2018] [Indexed: 11/22/2022]
Abstract
As a carbon-storage compound and osmoprotectant in brown algae, mannitol is synthesized and then accumulated at high levels in Saccharina japonica (Sja); however, the underlying control mechanisms have not been studied. Our analysis of genomic and transcriptomic data from Sja shows that mannitol metabolism is a cyclic pathway composed of four distinct steps. A mannitol-1-phosphate dehydrogenase (M1PDH2) and two mannitol-1-phosphatases (M1Pase1 and MIPase2) work together or in combination to exhibit full enzymatic properties. Based on comprehensive transcriptomic data from different tissues, generations, and sexes as well as under different stress conditions, coupled with droplet digital PCR (ddPCR) and proteomic confirmation, we suggest that SjaM1Pase1 plays a major role in mannitol biosynthesis and that the basic mannitol anabolism and the carbohydrate pool dynamics are responsible for carbon storage and anti-stress mechanism. Our proteomic data indicate that mannitol metabolism remains constant during diurnal cycle in Sja. In addition, we discover that mannitol-metabolism-associated (MMA) genes show differential expression between the multicellular filamentous (gametophyte) and large parenchymal thallus (sporophyte) generations and respond differentially to environmental stresses, such as hyposaline and hyperthermia conditions. Our results indicate that the ecophysiological significance of such differentially expressed genes may be attributable to the evolution of heteromorphic generations (filamentous and thallus) and environmental adaptation of Laminariales.
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Affiliation(s)
- Shan Chi
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China; Qingdao Haida BlueTek Biotechnology Co., Ltd., Qingdao 266003, China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing 100097, China
| | - Tao Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
| | - Xumin Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; College of Life Sciences, Yantai University, Yantai 264005, China.
| | - Cui Liu
- Qingdao Haida BlueTek Biotechnology Co., Ltd., Qingdao 266003, China
| | - Yuemei Jin
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Hongxin Yin
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Xin Xu
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Jun Yu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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10
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Manley ME, Hong K, Yin P, Chi S, Cai Y, Hua C, Daemen LL, Hermann RP, Wang H, May AF, Asta M, Ahmadi M. Giant isotope effect on phonon dispersion and thermal conductivity in methylammonium lead iodide. Sci Adv 2020; 6:eaaz1842. [PMID: 32789169 PMCID: PMC7399528 DOI: 10.1126/sciadv.aaz1842] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 06/19/2020] [Indexed: 05/29/2023]
Abstract
Lead halide perovskites are strong candidates for high-performance low-cost photovoltaics, light emission, and detection applications. A hot-phonon bottleneck effect significantly extends the cooling time of hot charge carriers, which thermalize through carrier-optic phonon scattering, followed by optic phonon decay to acoustic phonons and finally thermal conduction. To understand these processes, we adjust the lattice dynamics independently of electronics by changing isotopes. We show that doubling the mass of hydrogen in methylammonium lead iodide by replacing protons with deuterons causes a large 20 to 50% softening of the longitudinal acoustic phonons near zone boundaries, reduces thermal conductivity by ~50%, and slows carrier relaxation kinetics. Phonon softening is attributed to anticrossing with the slowed libration modes of the deuterated molecules and the reduced thermal conductivity to lowered phonon velocities. Our results reveal how tuning the organic molecule dynamics enables control of phonons important to thermal conductivity and the hot-phonon bottleneck.
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Affiliation(s)
- M. E. Manley
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - K. Hong
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - P. Yin
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - S. Chi
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Y. Cai
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA 94720, USA
| | - C. Hua
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - L. L. Daemen
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - R. P. Hermann
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - H. Wang
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - A. F. May
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - M. Asta
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - M. Ahmadi
- Joint Institute for Advanced Materials, Department of Materials Science and Engineering, University of Tennessee, Knoxville, TN 37996, USA
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11
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Jaimes C, Vajapeyam S, Brown D, Kao PC, Ma C, Greenspan L, Gupta N, Goumnerova L, Bandopahayay P, Dubois F, Greenwald NF, Zack T, Shapira O, Beroukhim R, Ligon KL, Chi S, Kieran MW, Wright KD, Poussaint TY. MR Imaging Correlates for Molecular and Mutational Analyses in Children with Diffuse Intrinsic Pontine Glioma. AJNR Am J Neuroradiol 2020; 41:874-881. [PMID: 32381545 DOI: 10.3174/ajnr.a6546] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Accepted: 03/16/2020] [Indexed: 01/13/2023]
Abstract
BACKGROUND AND PURPOSE Recent advances in molecular techniques have characterized distinct subtypes of diffuse intrinsic pontine gliomas. Our aim was the identification of MR imaging correlates of these subtypes. MATERIALS AND METHODS Initial MRIs from subjects with diffuse intrinsic pontine gliomas recruited for a prospective clinical trial before treatment were analyzed. Retrospective imaging analyses included FLAIR/T2 tumor volume, tumor volume enhancing, the presence of cyst and/or necrosis, median, mean, mode, skewness, kurtosis of ADC tumor volume based on FLAIR, and enhancement at baseline. Molecular subgroups based on EGFR and MGMT mutations were established. Histone mutations were also determined (H3F3A, HIST1H3B, HIST1H3C). Univariate Cox proportional hazards regression was used to test the association of imaging predictors with overall and progression-free survival. Wilcoxon rank sum, Kruskal-Wallis, and Fisher exact tests were used to compare imaging measures among groups. RESULTS Fifty patients had biopsy and MR imaging. The median age at trial registration was 6 years (range, 3.3-17.5 years); 52% were female. On the basis of immunohistochemical results, 48 patients were assigned to 1 of 4 subgroups: 28 in MGMT-/epidermal growth factor receptor (EGFR)-, 14 in MGMT-/EGFR+, 3 in MGMT+/EGFR-, and 3 in MGMT+/EGFR+. Twenty-three patients had histone mutations in H3F3A, 8 in HIST1H3B, and 3 in HIST1H3C. Enhancing tumor volume was near-significantly different across molecular subgroups (P = .04), after accounting for the false discovery rate. Tumor volume enhancing, median, mode, skewness, and kurtosis ADC T2-FLAIR/T2 were significantly different (P ≤ .048) between patients with H3F3A and HIST1H3B/C mutations. CONCLUSIONS MR imaging features including enhancement and ADC histogram parameters are correlated with molecular subgroups and mutations in children with diffuse intrinsic pontine gliomas.
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Affiliation(s)
- C Jaimes
- From the Departments of Radiology (C.J., S.V., T.Y.P.).,Fetal-Neonatal Neuroimaging and Developmental Science Center (C.J.), Division of Newborn Medicine; Boston Children's Hospital, Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - S Vajapeyam
- From the Departments of Radiology (C.J., S.V., T.Y.P.).,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - D Brown
- Tumor Imaging Metrics Core (D.B.), Massachusetts General Hospital, Boston, Massachusetts
| | - P-C Kao
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts
| | - C Ma
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - L Greenspan
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts
| | - N Gupta
- Department of Pediatric Neurosurgery (N.G.), University of California San Francisco Benioff Children's Hospital, San Francisco, California.,University of California San Francisco School of Medicine (N.G., T.Z.), San Francisco, California
| | | | - P Bandopahayay
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - F Dubois
- Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - N F Greenwald
- Stanford University School of Medicine (N.F.G.), Palo Alto, California
| | - T Zack
- University of California San Francisco School of Medicine (N.G., T.Z.), San Francisco, California
| | - O Shapira
- Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Broad Institute of Massachusetts Institute of Technology and Harvard University (O.S.), Cambridge, Massachusetts
| | - R Beroukhim
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - K L Ligon
- Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Department of Pathology (K.L.L.), Brigham and Women's Hospital, Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - S Chi
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - M W Kieran
- Clinical Trials Division (M.W.K.), Bristol-Myers-Squibb, New York, New York
| | - K D Wright
- Pediatrics, Division of Oncology (P.-C.K., C.M., L.G., P.B., R.B., S.C., K.D.W.).,Dana Farber Cancer Institute (P.-C.K., C.M., L.G., P.B., F.D., O.S., R.B., K.L.L., S.C., K.D.W.), Boston, Massachusetts.,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
| | - T Y Poussaint
- From the Departments of Radiology (C.J., S.V., T.Y.P.) .,Harvard Medical School (C.J., S.V., C.M., P.B., F.D., R.B., K.L.L., S.C., K.D.W., T.Y.P.), Boston, Massachusetts
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12
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Sedanza MGC, Meinita MDN, Tang X, Chen W, Yin H, Liu C, Jin Y, Chi S, Li Y, Liu T. Complete sequence of mitochondrial DNA of Gracilaria edulis (Rhodophyta). Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2017.1422413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Mary Grace C. Sedanza
- College of Fisheries and Ocean Sciences, University of the Philippines Visayas Miagao, Iloilo, Philippines
| | - Maria Dyah Nur Meinita
- Faculty of Fisheries and Marine Science, Jenderal Soedirman University, Purwokerto, Indonesia
| | - Xianming Tang
- Hainan Academy of Ocean and Fisheries Sciences, Haikou, China
| | - Weizhou Chen
- Marine Biology Institute, Shantou University, Shantou, China
| | - Hongxin Yin
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Cui Liu
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Yuemei Jin
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Shan Chi
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Qingdao Haida BlueTek Biotechnology Co., Ltd, Qingdao, China
| | - Yue Li
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Tao Liu
- Laboratory of Genetics and Breeding of Marine Organisms, College of Marine Life Sciences, Ocean University of China, Qingdao, China
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13
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Wang G, Liu N, Li Y, Zhang L, Meinita MDN, Chen W, Liu T, Chi S. The complete plastid genome and phylogenetic analysis of Gracilaria chilensis. Mitochondrial DNA B Resour 2020; 5:1282-1283. [PMID: 33366928 PMCID: PMC7510834 DOI: 10.1080/23802359.2018.1431070] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 01/18/2018] [Indexed: 11/15/2022]
Abstract
Gracilaria chilensis is an economically important species of macroalgae. The plastid genome sequence of G. chilensis is 185,640 bp with a GC content of 29.34%. A total of 236 genes were determined, containing 203 protein-encoding genes, three rRNA genes, 30 tRNA genes, and one intron (with intronic ORF) inserted into the trnM gene. The gene content and structure of Gracilariaceae species were relatively well conserved. The phylogenetic analysis, based on the red algal plastid genomes, suggested that G. chilensis had a closer relationship with Gracilaria tenuistipitata var. liui in Gracilaria.
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Affiliation(s)
- Guoliang Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China.,CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Na Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Yue Li
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Lei Zhang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Maria Dyah Nur Meinita
- Faculty of Fisheries and Marine Science, Jenderal Soedirman University, Purwokerto, Indonesia
| | - Weizhou Chen
- Marine Biology Institute, Shantou University, Shantou, China
| | - Tao Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Shan Chi
- College of Marine Life Sciences, Ocean University of China, Qingdao, China.,Qingdao Haida BlueTek Biotechnology Co., Ltd, Qingdao, China
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14
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Kim MG, Winn B, Chi S, Savici AT, Rodriguez-Rivera JA, Chen WC, Xu X, Li Y, Kim JW, Cheong SW, Kiryukhin V. Spin-liquid-like state in pure and Mn-doped TbInO 3 with a nearly triangular lattice. Phys Rev B 2019; 100:10.1103/PhysRevB.100.024405. [PMID: 38712019 PMCID: PMC11071068 DOI: 10.1103/physrevb.100.024405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Inelastic neutron scattering studies in single crystals of TbInO3 and TbIn0.95Mn0.05O3 with nearly triangular antiferromagnetic lattice are reported. At low energies, a broad and apparently gapless continuum of magnetic excitations, located at the triangular lattice (TL) Brillouin zone boundary, is observed. The data are well described by the uncorrelated nearest-neighbor valence bonds model. At higher energies, a broad excitation branch dispersing from the TL zone boundary is observed. No signs of static magnetic order are found down to the temperatures two orders of magnitude smaller than the effective interaction energy. The fluctuating magnetic moment exceeds two-thirds of the Tb3+ free-ion value and is confined to the TL plane. These observations are consistent with a TL-based spin liquid state in TbInO3.
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Affiliation(s)
- M G Kim
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
| | - B Winn
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - S Chi
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - A T Savici
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - J A Rodriguez-Rivera
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, USA
- Department of Materials Science, University of Maryland, College Park, Maryland 20742, USA
| | - W C Chen
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, Maryland 20899, USA
- Department of Materials Science, University of Maryland, College Park, Maryland 20742, USA
| | - X Xu
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Y Li
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
| | - J W Kim
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
| | - S-W Cheong
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
| | - V Kiryukhin
- Department of Physics & Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA
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15
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Liu T, Wang X, Wang G, Jia S, Liu G, Shan G, Chi S, Zhang J, Yu Y, Xue T, Yu J. Evolution of Complex Thallus Alga: Genome Sequencing of Saccharina japonica. Front Genet 2019; 10:378. [PMID: 31118944 PMCID: PMC6507550 DOI: 10.3389/fgene.2019.00378] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 04/09/2019] [Indexed: 01/15/2023] Open
Abstract
Saccharina, as one of the most important brown algae (Phaeophyceae) with multicellular thallus, has a very remarkable evolutionary history, and globally accounts for most of the economic marine aquaculture production worldwide. Here, we present the 580.5 million base pairs of genome sequence of Saccharina japonica, whose current assembly contains 35,725 protein-coding genes. In a comparative analysis with Ectocarpus siliculosus, the integrated virus sequence suggested the genome evolutionary footprints, which derived from their co-ancestry and experienced genomic arrangements. Furthermore, the gene expansion was found to be an important strategy for functional evolution, especially with regard to extracelluar components, stress-related genes, and vanadium-dependent haloperoxidases, and we proposed a hypothesis that gene duplication events were the main driving force for the evolution history from multicellular filamentous algae to thallus algae. The sequenced Saccharina genome paves the way for further molecular studies and is useful for genome-assisted breeding of S. japonica and other related algae species.
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Affiliation(s)
- Tao Liu
- College of Marine Life Science, Ocean University of China, Qingdao, China
- College of Life Sciences, Yantai University, Yantai, China
| | - Xumin Wang
- College of Life Sciences, Yantai University, Yantai, China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shangang Jia
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Guiming Liu
- Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Guangle Shan
- University of Chinese Academy of Sciences, Beijing, China
| | - Shan Chi
- College of Marine Life Science, Ocean University of China, Qingdao, China
- Qingdao Haida Blue Tek Biotechnology Co., Ltd, Qingdao, China
| | - Jing Zhang
- College of Biological Engineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Yahui Yu
- College of Marine Life Science, Ocean University of China, Qingdao, China
| | - Ting Xue
- The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, Fuzhou, China
| | - Jun Yu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
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16
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Chi S, Liu JL, Kang HC, Lv DM. Continuous nursing intervention on recovery of diabetic patients. J BIOL REG HOMEOS AG 2018; 32:1507-1513. [PMID: 30574757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The aim of this study was to probe the influence of continuous nursing intervention on recovery of diabetic patients. From October 2016 to June 2017, 80 diabetic patients who received treatment in our hospital were selected and randomly divided into an intervention group and a control group. The intervention group received continuous nursing care including indirect follow-up, health education and home visit. The self-care ability and blood sugar of the two groups were compared three months later. The score of self-care ability in the intervention group was 89.64±1.64 and that in control group was 72.68±2.47, and a significant difference was observed (P less than 0.001). The fasting blood glucose level in the intervention group was 6.62±0.86 MMOL/L, and the 2-hour post-meal blood glucose level was 8.47±1.32 MMOL/L, which were both lower than those in the control group. Continuous nursing can help monitor the recovery of patients after discharge. It is helpful to improve the self-care ability of patients, control blood sugar level, and promote recovery. It is worth wide promotion.
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Affiliation(s)
- S Chi
- Endocrinology Unit 5, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China
| | - J L Liu
- Endocrinology Unit 5, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China
| | - H C Kang
- Endocrinology Unit 5, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China
| | - D M Lv
- Endocrinology Unit 5, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China
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17
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Day RP, Levy G, Michiardi M, Zwartsenberg B, Zonno M, Ji F, Razzoli E, Boschini F, Chi S, Liang R, Das PK, Vobornik I, Fujii J, Hardy WN, Bonn DA, Elfimov IS, Damascelli A. Influence of Spin-Orbit Coupling in Iron-Based Superconductors. Phys Rev Lett 2018; 121:076401. [PMID: 30169095 DOI: 10.1103/physrevlett.121.076401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2018] [Revised: 06/03/2018] [Indexed: 06/08/2023]
Abstract
We report on the influence of spin-orbit coupling (SOC) in Fe-based superconductors via application of circularly polarized spin and angle-resolved photoemission spectroscopy. We combine this technique in representative members of both the Fe-pnictides (LiFeAs) and Fe-chalcogenides (FeSe) with tight-binding calculations to establish an ubiquitous modification of the electronic structure in these materials imbued by SOC. At low energy, the influence of SOC is found to be concentrated on the hole pockets, where the largest superconducting gaps are typically found. This effect varies substantively with the k_{z} dispersion, and in FeSe we find SOC to be comparable to the energy scale of orbital order. These results contest descriptions of superconductivity in these materials in terms of pure spin-singlet eigenstates, raising questions regarding the possible pairing mechanisms and role of SOC therein.
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Affiliation(s)
- R P Day
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - G Levy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - M Michiardi
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
- Max Planck Institute for Chemical Physics of Solids, Nöthnitzer Straße 40, 01187 Dresden, Germany
| | - B Zwartsenberg
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - M Zonno
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - F Ji
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - E Razzoli
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - F Boschini
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - S Chi
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - R Liang
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - P K Das
- Istituto Officina dei Materiali (IOM)-CNR, Laboratorio TASC, Area Science Park, S.S.14, Km 163.5, I-34149 Trieste, Italy
- International Centre for Theoretical Physics (ICTP), Strada Costiera 11, I-34100 Trieste, Italy
| | - I Vobornik
- Istituto Officina dei Materiali (IOM)-CNR, Laboratorio TASC, Area Science Park, S.S.14, Km 163.5, I-34149 Trieste, Italy
| | - J Fujii
- Istituto Officina dei Materiali (IOM)-CNR, Laboratorio TASC, Area Science Park, S.S.14, Km 163.5, I-34149 Trieste, Italy
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - D A Bonn
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - I S Elfimov
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - A Damascelli
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Quantum Matter Institute, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
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Stonaha PJ, Karaman I, Arroyave R, Salas D, Bruno NM, Wang Y, Chisholm MF, Chi S, Abernathy DL, Chumlyakov YI, Manley ME. Glassy Phonon Heralds a Strain Glass State in a Shape Memory Alloy. Phys Rev Lett 2018; 120:245701. [PMID: 29956961 DOI: 10.1103/physrevlett.120.245701] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Revised: 03/30/2018] [Indexed: 06/08/2023]
Abstract
Shape memory strain glasses are frustrated ferroelastic materials with glasslike slow relaxation and nanodomains. It is possible to change a NiCoMnIn Heusler alloy from a martensitically transforming alloy to a nontransforming strain glass by annealing, but minimal differences are evident in the short- or long-range order above the transition temperature-although there is a structural relaxation and a 0.18% lattice expansion in the annealed sample. Using neutron scattering we find glasslike phonon damping in the strain glass but not the transforming alloy at temperatures well above the transition. Damping occurs in the mode with displacements matching the martensitic transformation. With support from first-principles calculations, we argue that the strain glass originates not with transformation strain pinning but with a disruption of the underlying electronic instability when disorder resonance states cross the Fermi level.
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Affiliation(s)
- P J Stonaha
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, USA
| | - I Karaman
- Department of Material Science and Engineering, Texas A&M University, College Station, Texas 77843, USA
| | - R Arroyave
- Department of Material Science and Engineering, Texas A&M University, College Station, Texas 77843, USA
- Department of Mechanical Engineering, Texas A&M University, College Station, Texas 77843, USA
| | - D Salas
- Department of Material Science and Engineering, Texas A&M University, College Station, Texas 77843, USA
| | - N M Bruno
- Department of Material Science and Engineering, Texas A&M University, College Station, Texas 77843, USA
| | - Y Wang
- Department of Mechanical Engineering, Texas A&M University, College Station, Texas 77843, USA
| | - M F Chisholm
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, USA
| | - S Chi
- Neutron Scattering Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, USA
| | - D L Abernathy
- Neutron Scattering Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, USA
| | - Y I Chumlyakov
- Siberian Physical Technical Institute, Tomsk State University, Tomsk, 634050, Russia
| | - M E Manley
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37831, USA
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19
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Manley ME, Stonaha PJ, Abernathy DL, Chi S, Sahul R, Hermann RP, Budai JD. Supersonic propagation of lattice energy by phasons in fresnoite. Nat Commun 2018; 9:1823. [PMID: 29739934 PMCID: PMC5940883 DOI: 10.1038/s41467-018-04229-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Accepted: 04/13/2018] [Indexed: 11/09/2022] Open
Abstract
Controlling the thermal energy of lattice vibrations separately from electrons is vital to many applications including electronic devices and thermoelectric energy conversion. To remove heat without shorting electrical connections, heat must be carried in the lattice of electrical insulators. Phonons are limited to the speed of sound, which, compared to the speed of electronic processes, puts a fundamental constraint on thermal management. Here we report a supersonic channel for the propagation of lattice energy in the technologically promising piezoelectric mineral fresnoite (Ba2TiSi2O8) using neutron scattering. Lattice energy propagates 2.8−4.3 times the speed of sound in the form of phasons, which are caused by an incommensurate modulation in the flexible framework structure of fresnoite. The phasons enhance the thermal conductivity by 20% at room temperature and carry lattice-energy signals at speeds beyond the limits of phonons. Fresnoite has an incommensurate structure that can be described as a nonlinear soliton lattice. Manley et al. show that the additional phason degrees of freedom associated with the solitonic structure can travel faster than more conventional phonon excitations, enabling supersonic energy transport.
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Affiliation(s)
- M E Manley
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA.
| | - P J Stonaha
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA
| | - D L Abernathy
- Neutron Scattering Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA
| | - S Chi
- Neutron Scattering Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA
| | - R Sahul
- Meggitt Sensing Systems, Irvine, CA, 92606, USA
| | - R P Hermann
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA
| | - J D Budai
- Material Science and Technology Division, Oak Ridge National Lab, Oak Ridge, TN, 37831, USA
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20
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Chi S, Liu T, Wang X, Wang R, Wang S, Wang G, Shan G, Liu C. Functional genomics analysis reveals the biosynthesis pathways of important cellular components (alginate and fucoidan) of Saccharina. Curr Genet 2018; 64:259-273. [PMID: 28825126 PMCID: PMC5778160 DOI: 10.1007/s00294-017-0733-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 08/08/2017] [Accepted: 08/08/2017] [Indexed: 11/26/2022]
Abstract
Although alginate and fucoidan are unique cellular components and have important biological significance in brown algae, and many possible involved genes are present in brown algal genomes, their functions and regulatory mechanisms have not been fully revealed. Both polysaccharides may play important roles in the evolution of multicellular brown algae, but specific and in-depth studies are still limited. In this study, a functional genomics analysis of alginate and fucoidan biosynthesis routes was conducted in Saccharina, and the key events in these pathways in brown algae were identified. First, genes from different sources, including eukaryotic hosts via endosymbiotic gene transfer and bacteria via horizontal gene transfer, were combined to build a complete pathway framework. Then, a critical event occurred to drive these pathways to have real function: one of the mannose-6-phosphate isomerase homologs that arose by gene duplication subsequently adopted the function of the mannose-1-phosphate guanylyltransferase (MGP) gene, which was absent in algal genomes. Further, downstream pathway genes proceeded with gene expansions and complex transcriptional mechanisms, which may be conducive to the synthesis of alginate and fucoidan with diverse structures and contents depending on the developmental stage, tissue structure, and environmental conditions. This study revealed the alginate and fucoidan synthesis pathways and all included genes from separate phylogenetic sources in brown algae. Enzyme assays confirmed the function of key genes and led to the determination of a substitute for the missing MPG. All gene families had constitutively expressed member(s) to maintain the basic synthesis; and the gene function differentiation, enzyme characterization and gene expression regulation differences separated brown algae from other algae lineages and were considered to be the major driving forces for sophisticated system evolution of brown algae.
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Affiliation(s)
- Shan Chi
- Ocean University of China, Qingdao, Shandong Province, People's Republic of China
- Qingdao Haida BlueTek Biotechnology Co., Ltd, Qingdao, Shandong Province, People's Republic of China
| | - Tao Liu
- Ocean University of China, Qingdao, Shandong Province, People's Republic of China.
| | - Xumin Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
| | - Ren Wang
- Ocean University of China, Qingdao, Shandong Province, People's Republic of China
| | - Shanshan Wang
- Ocean University of China, Qingdao, Shandong Province, People's Republic of China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, People's Republic of China
| | - Guangle Shan
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China
| | - Cui Liu
- Qingdao Haida BlueTek Biotechnology Co., Ltd, Qingdao, Shandong Province, People's Republic of China
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21
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Abstract
In this study, we sequenced and analyzed the complete mitogenome of Grateloupia filicina (Lamouroux) C. Agardh. The complete G. filicina mitogenome was 29,274-bp long, containing 51 genes, including 24 protein-coding genes, 1 intron, 2 rRNA genes, 24 tRNA genes, and 1 unidentified open reading frame. Twenty-one of the 24 (87.5%) protein-coding genes ended with the stop codon TAA, whereas 3 (12.5%) ended with TAG. All the protein-coding genes in G. filicina used the start codon ATG. Phylogenetic analysis revealed that G. filicina clustered with G. taiwanensis. The complete mitochondrial genome sequence provided here would be useful for understanding the evolution of Grateloupia further.
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Affiliation(s)
- Yue Li
- College of Marine Life Sciences, Ocean University of China, Qingdao, P. R. China
| | - Maria Dyah Nur Meinita
- Faculty of Fisheries and Marine Science, Jenderal Soedirman University, Purwokerto, Indonesia
| | - Tao Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, P. R. China
| | - Shan Chi
- College of Marine Life Sciences, Ocean University of China, Qingdao, P. R. China.,Qingdao Haida BlueTek Biotechnology Co., Ltd, Qingdao, P. R. China
| | - Hongxin Yin
- College of Marine Life Sciences, Ocean University of China, Qingdao, P. R. China
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22
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Li Y, Liu N, Yin H, Liu C, Zhang L, Jin Y, Wang H, Chi S, Liu T. Complete sequences of the mitochondrial DNA of the Petalonia binghamiae. Mitochondrial DNA B Resour 2018; 3:95-96. [PMID: 33474079 PMCID: PMC7800842 DOI: 10.1080/23802359.2017.1407688] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Here, the complete mitogenome of Petalonia binghamiae (J. Agardh) K. L. Vinogradova was determined and analyzed. The length of the complete P. binghamiae mitogenome was determined to be 37,460 bp. The mitogenome contains a set of 68 genes, including 35 protein-coding genes, 3 rRNA genes, 24 tRNA genes, 1 tRNA pseudogene, and 5 unidentified open reading frames (ORFs). The noncoding sequence constitutes 7.03% of the P. binghamiae mtDNA. Twenty-seven of the 35 (77.14%) protein-coding genes ended with a TAA stop codon, 6 (17.14%) with TAG, and 2 (5.71%) with TGA. All protein-coding genes in P. binghamiae were inferred to use the start codon ATG, except for nad11. The mitogenome phylogenetic analysis, based on 35 protein-coding genes, reveals that P. binghamia showed that P. binghamiae was clustered together with P. fascia. The complete mitochondrial genome sequence provided here would be useful for further understanding the evolution of Petalonia.
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Affiliation(s)
- Yue Li
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Na Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Hongxin Yin
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Cui Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Lei Zhang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Yuemei Jin
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Haiyang Wang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
| | - Shan Chi
- Qingdao Haida BlueTek Biotechnology Co., LTD, Qingdao, People's Republic of China
| | - Tao Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People's Republic of China
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23
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Rong Y, Padron AV, Hagerty KJ, Nelson N, Chi S, Keyhani NO, Katz J, Datta SPA, Gomes C, McLamore ES. Post hoc support vector machine learning for impedimetric biosensors based on weak protein–ligand interactions. Analyst 2018; 143:2066-2075. [DOI: 10.1039/c8an00065d] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
We develop a simple, open source machine learning algorithm for analyzing impedimetric biosensor data using a mobile phone.
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Affiliation(s)
- Y. Rong
- Agricultural & Biological Engineering
- Institute of Food and Agricultural Sciences
- University of Florida
- USA
| | - A. V. Padron
- Agricultural & Biological Engineering
- Institute of Food and Agricultural Sciences
- University of Florida
- USA
| | - K. J. Hagerty
- Agricultural & Biological Engineering
- Institute of Food and Agricultural Sciences
- University of Florida
- USA
| | - N. Nelson
- Biological & Agricultural Engineering
- North Carolina State University
- USA
| | - S. Chi
- Institute of Agricultural Resources and Regional Planning
- Chinese Academy of Agricultural Sciences; Key Laboratory of Microbial Resources
- Ministry of Agriculture
- Beijing
- China
| | - N. O. Keyhani
- Department of Microbiology and Cell Sciences
- Institute of Food and Agricultural Sciences
- University of Florida
- USA
| | - J. Katz
- Department of Oral and Maxillofacial Diagnostic Sciences
- University of Florida
- USA
| | - S. P. A. Datta
- MIT Auto-ID Labs
- Department of Mechanical Engineering
- Massachusetts Institute of Technology
- USA
- Biomedical Engineering Program
| | - C. Gomes
- Department of Mechanical Engineering
- Iowa State University
- USA
| | - E. S. McLamore
- Agricultural & Biological Engineering
- Institute of Food and Agricultural Sciences
- University of Florida
- USA
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24
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Liu N, Wang G, Li Y, Zhang L, Meinita MDN, Chen W, Liu T, Chi S. The complete mitochondrial genome of the economic red alga, Gracilaria chilensis. Mitochondrial DNA B Resour 2017; 2:716-717. [PMID: 33473957 PMCID: PMC7799728 DOI: 10.1080/23802359.2017.1390416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Gracilaria chilensis is an economically important marine alga. In this study, we obtained complete mitogenome of G. chilensis by high-throughput sequencing, which was mapped as a circular molecule of 26,897 bp with 27.56% GC content and was identified 53 genes, including 25 protein-coding genes, 2 rRNA genes, 26 tRNA genes, and 1 group II intron inserted into the trnI gene. In addition, a 162-bp stable stem loop was found in intergenic regions, which was most likely associated with DNA transcription and replication. The Bayesian phylogenetic tree of Gracilariaceae revealed that G. chilensis and G. salicornia and G. changii shared a closer relationship than G. vermiculophylla in the genus Gracilaria.
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Affiliation(s)
- Na Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, PR China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, PR China.,University of Chinese Academy of Sciences, Beijing, PR China
| | - Yue Li
- College of Marine Life Sciences, Ocean University of China, Qingdao, PR China
| | - Lei Zhang
- College of Marine Life Sciences, Ocean University of China, Qingdao, PR China
| | - Maria Dyah Nur Meinita
- Faculty of Fisheries and Marine Science, Jenderal Soedirman University, Purwokerto, Indonesia
| | - Weizhou Chen
- Marine Biology Institute, Shantou University, Shantou, PR China
| | - Tao Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, PR China
| | - Shan Chi
- College of Marine Life Sciences, Ocean University of China, Qingdao, PR China.,Qingdao Haida BlueTek Biotechnology Co., LTD, Qingdao, PR China
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Liu N, Zhang J, Liu C, Li Y, Liu T, Chi S. Complete mitochondrial genome of Saccharina cultivar 'Hainong No.1' ( Saccharina japonica × latissima). Mitochondrial DNA B Resour 2017; 2:672-673. [PMID: 33473942 PMCID: PMC7800615 DOI: 10.1080/23802359.2017.1383197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Accepted: 09/19/2017] [Indexed: 10/25/2022] Open
Abstract
Here, we sequenced the complete mitogenome of 'Hainong No.1', a hybrid Saccharina cultivar produced by crossing the cultivars 'Zaohoucheng' (♂) and 'Pingbancai' (♀). Circular mapping revealed that the mitogenome was 37,657 bp in length and had an overall AT content of 64.66%, including 35 protein-encoding genes, three ribosomal RNA genes (rRNA), 25 transfer RNA genes (tRNA) and three open reading frames (ORF). A phylogenetic tree constructed from the amino acids separated the six cultivars into two groups; 'Hainong No.1' had a closer evolutionary relationship with the cultivars 'Zaohoucheng', 'Pingbancai' and 'Ailunwan', whereas 'Rongfu' and 'Fujian' formed a distinct cluster. Further comparison between the 'Hainong No.1' and the parental mitogenomes displayed that 'Pingbancai' and 'Zaohoucheng' were the female and male parents, respectively.
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Affiliation(s)
- Na Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Jing Zhang
- College of Biology Engineering, Qilu University of Technology, Jinan, China
| | - Cui Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Yue Li
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Tao Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Shan Chi
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Qingdao Haida BlueTek Biotechnology Co., LTD, Qingdao, China
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26
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Chi S, Kapoor A, Katz M, Rabin L. A-09Metamemory in Relation to Objective Episodic Memory Preclinical Dementia. Arch Clin Neuropsychol 2017. [DOI: 10.1093/arclin/acx076.9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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27
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Zhang L, Wang X, Liu T, Wang G, Chi S, Liu C, Wang H. Complete mitochondrial genome of Kjellmaniella crassifolia (Laminariaceae, Phaeophyceae): Laminaria and Saccharina are distinct genus. Mitochondrial DNA A DNA Mapp Seq Anal 2016; 27:4592-4594. [PMID: 27159726 DOI: 10.3109/19401736.2015.1060427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2015] [Revised: 05/18/2015] [Accepted: 06/06/2015] [Indexed: 11/13/2022]
Abstract
The kelp Kjellmaniella crassifolia is one of the most important economic resources, which is widely distributed in Japan and has now been introduced to coastal areas in China's Shandong Province for cultivation. In this study, we present the complete mitochondrial genome of K. crassifolia. The genome is characterized as a circular molecule of 37,627 bp in length with an overall A + T content of 64.81%. The mitogenome contains three ribosomal RNA genes (rRNA), 24 transfer RNA genes (tRNA), 35 protein-coding genes, and three conserved open reading frames (ORFs). Most genes are encoded on the H-strand and 11 pairs of overlapping genes are identified with the overlap size from 1 to 16 bp. The gene content and organization of mitogenome for K. crassifolia is identical to those for Saccharina, Laminaria, Undaria, and Costaria. Phylogenetic analysis based on 35 mitochondrial protein-coding genes clearly proves that Laminaria and Saccharina are distinct genus identified by Kjellmaniella. The present study provides new molecular data for further studies on evolutionary relationship within Phaeophyceae.
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Affiliation(s)
- Lei Zhang
- a Laboratory of Genetics and Breeding of Marine Organism , College of Marine Life Sciences, Ocean University of China , Qingdao , PR China and
| | - Xumin Wang
- b Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing , PR China
| | - Tao Liu
- a Laboratory of Genetics and Breeding of Marine Organism , College of Marine Life Sciences, Ocean University of China , Qingdao , PR China and
| | - Guoliang Wang
- b Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing , PR China
| | - Shan Chi
- a Laboratory of Genetics and Breeding of Marine Organism , College of Marine Life Sciences, Ocean University of China , Qingdao , PR China and
| | - Cui Liu
- a Laboratory of Genetics and Breeding of Marine Organism , College of Marine Life Sciences, Ocean University of China , Qingdao , PR China and
| | - Haiyang Wang
- a Laboratory of Genetics and Breeding of Marine Organism , College of Marine Life Sciences, Ocean University of China , Qingdao , PR China and
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28
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Macdonald AJ, Tremblay-Johnston YS, Grothe S, Chi S, Dosanjh P, Johnston S, Burke SA. Dispersing artifacts in FT-STS: a comparison of set point effects across acquisition modes. Nanotechnology 2016; 27:414004. [PMID: 27607539 DOI: 10.1088/0957-4484/27/41/414004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Fourier-transform scanning tunnelling spectroscopy (FT-STS), or quasiparticle interference, has become an influential tool for the study of a wide range of important materials in condensed matter physics. However, FT-STS in complex materials is often challenging to interpret, requiring significant theoretical input in many cases, making it crucial to understand potential artifacts of the measurement. Here, we compare the most common modes of acquiring FT-STS data and show through both experiment and simulations that artifact features can arise that depend on how the tip height is stabilized throughout the course of the measurement. The most dramatic effect occurs when a series of dI/dV maps at different energies are acquired with simultaneous constant current feedback; here a feature that disperses in energy appears that is not observed in other measurement modes. Such artifact features are similar to those arising from real physical processes in the sample and are susceptible to misinterpretation.
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Affiliation(s)
- A J Macdonald
- Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada V6T 1Z1. Stewart Blusson Quantum Matter Institute, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
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Chi S, Zivanovic S, Penfield MP. Application of Chitosan Films Enriched with Oregano Essential Oil on Bologna – Active Compounds and Sensory Attributes. FOOD SCI TECHNOL INT 2016. [DOI: 10.1177/1082013206063845] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Chitosan films prepared with oregano essential oil were applied on bologna slices. Release of the essential oil compounds during film preparation and application on the meat product and consumer acceptability of bologna enriched with oregano essential oil were tested. Oregano essential oil compounds were quantified by gas chromatography mass spectroscopy (GCMS) after extraction from the filmforming solution, films before and after application on bologna and from bologna slices before and after application of the films. The results indicated that the concentration of components of the essential oil sharply decreased during film preparation, e.g. from 757.7 ppm carvacrol in film-forming solution to 2.1 ppm in dried films. No carvacrol was detected in the films after application on bologna for 5 days at 4°C, mainly due to its diffusion into bologna. It seemed that the moisture and high lipid content of bologna helped the diffusion of the oregano essential oil from the chitosan film matrix into the product. Sensory evaluation suggested that addition of 45 ppm or less of oregano oil to bologna would be acceptable to consumers. Results support the potential use of chitosan–oregano essential oil films as an antimicrobial packaging material for processed meat.
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Affiliation(s)
- S. Chi
- Department of Food Science and Technology, The University of Tennessee, 2509 River Drive, Knoxville, TN 37996–4500, USA
| | - S. Zivanovic
- Department of Food Science and Technology, The University of Tennessee, 2509 River Drive, Knoxville, TN 37996–4500, USA
| | - M. P. Penfield
- Department of Food Science and Technology, The University of Tennessee, 2509 River Drive, Knoxville, TN 37996–4500, USA
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Bourgeois-Hope P, Chi S, Bonn DA, Liang R, Hardy WN, Wolf T, Meingast C, Doiron-Leyraud N, Taillefer L. Thermal Conductivity of the Iron-Based Superconductor FeSe: Nodeless Gap with a Strong Two-Band Character. Phys Rev Lett 2016; 117:097003. [PMID: 27610878 DOI: 10.1103/physrevlett.117.097003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Indexed: 06/06/2023]
Abstract
The thermal conductivity κ of the iron-based superconductor FeSe was measured at temperatures down to 75 mK in magnetic fields up to 17 T. In a zero magnetic field, the electronic residual linear term in the T=0 K limit, κ_{0}/T, is vanishingly small. The application of a magnetic field B causes an exponential increase in κ_{0}/T initially. Those two observations show that there are no zero-energy quasiparticles that carry heat and therefore no nodes in the superconducting gap of FeSe. The full field dependence of κ_{0}/T has the classic two-step shape of a two-band superconductor: a first rise at very low field, with a characteristic field B^{⋆}≪B_{c2}, and then a second rise up to the upper critical field B_{c2}. This shows that the superconducting gap is very small (but finite) on one of the pockets in the Fermi surface of FeSe. We estimate that the minimum value of the gap, Δ_{min}, is an order of magnitude smaller than the maximum value, Δ_{max}.
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Affiliation(s)
- P Bourgeois-Hope
- Département de physique and RQMP, Université de Sherbrooke, Sherbrooke, Québec J1K 2R1, Canada
| | - S Chi
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - D A Bonn
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - R Liang
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
- Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
| | - T Wolf
- Institute of Solid State Physics (IFP), Karlsruhe Institute of Technology, D-76021 Karlsruhe, Germany
| | - C Meingast
- Institute of Solid State Physics (IFP), Karlsruhe Institute of Technology, D-76021 Karlsruhe, Germany
| | - N Doiron-Leyraud
- Département de physique and RQMP, Université de Sherbrooke, Sherbrooke, Québec J1K 2R1, Canada
| | - Louis Taillefer
- Département de physique and RQMP, Université de Sherbrooke, Sherbrooke, Québec J1K 2R1, Canada
- Canadian Institute for Advanced Research, Toronto, Ontario M5G 1Z8, Canada
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Zhang L, Wang X, Liu T, Wang H, Wang G, Chi S, Liu C. Complete Plastid Genome of the Brown Alga Costaria costata (Laminariales, Phaeophyceae). PLoS One 2015; 10:e0140144. [PMID: 26444909 PMCID: PMC4596871 DOI: 10.1371/journal.pone.0140144] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2015] [Accepted: 09/21/2015] [Indexed: 11/19/2022] Open
Abstract
Costaria costata is a commercially and industrially important brown alga. In this study, we used next-generation sequencing to determine the complete plastid genome of C. costata. The genome consists of a 129,947 bp circular DNA molecule with an A+T content of 69.13% encoding a standard set of six ribosomal RNA genes, 27 transfer RNA genes, and 137 protein-coding genes with two conserved open reading frames (ORFs). The overall genome structure of C. costata is nearly the same as those of Saccharina japonica and Undaria pinnatifida. The plastid genomes of these three algal species retain a strong conservation of the GTG start codon while infrequently using TGA as a stop codon. In this regard, they differ substantially from the plastid genomes of Ectocarpus siliculosus and Fucus vesiculosus. Analysis of the nucleic acid substitution rates of the Laminariales plastid genes revealed that the petF gene has the highest substitution rate and the petN gene contains no substitution over its complete length. The variation in plastid genes between C. costata and S. japonica is lower than that between C. costata and U. pinnatifida as well as that between U. pinnatifida and S. japonica. Phylogenetic analyses demonstrated that C. costata and U. pinnatifida have a closer genetic relationship. We also identified two gene length mutations caused by the insertion or deletion of repeated sequences, which suggest a mechanism of gene length mutation that may be one of the key explanations for the genetic variation in plastid genomes.
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Affiliation(s)
- Lei Zhang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Xumin Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Tao Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Haiyang Wang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Shan Chi
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Cui Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
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Zhang L, Wang X, Liu T, Wang G, Chi S, Liu C, Wang H. Complete Plastid Genome Sequence of the Brown Alga Undaria pinnatifida. PLoS One 2015; 10:e0139366. [PMID: 26426800 PMCID: PMC4591262 DOI: 10.1371/journal.pone.0139366] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Accepted: 09/10/2015] [Indexed: 01/13/2023] Open
Abstract
In this study, we fully sequenced the circular plastid genome of a brown alga, Undaria pinnatifida. The genome is 130,383 base pairs (bp) in size; it contains a large single-copy (LSC, 76,598 bp) and a small single-copy region (SSC, 42,977 bp), separated by two inverted repeats (IRa and IRb: 5,404 bp). The genome contains 139 protein-coding, 28 tRNA, and 6 rRNA genes; none of these genes contains introns. Organization and gene contents of the U. pinnatifida plastid genome were similar to those of Saccharina japonica. There is a co-linear relationship between the plastid genome of U. pinnatifida and that of three previously sequenced large brown algal species. Phylogenetic analyses of 43 taxa based on 23 plastid protein-coding genes grouped all plastids into a red or green lineage. In the large brown algae branch, U. pinnatifida and S. japonica formed a sister clade with much closer relationship to Ectocarpus siliculosus than to Fucus vesiculosus. For the first time, the start codon ATT was identified in the plastid genome of large brown algae, in the atpA gene of U. pinnatifida. In addition, we found a gene-length change induced by a 3-bp repetitive DNA in ycf35 and ilvB genes of the U. pinnatifida plastid genome.
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Affiliation(s)
- Lei Zhang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Xumin Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Tao Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Guoliang Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Shan Chi
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Cui Liu
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
| | - Haiyang Wang
- Laboratory of Genetics and Breeding of Marine Organism, College of Marine Life Sciences, Ocean University of China, Qingdao, People’s Republic of China
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Tsai Y, Yu P, Chang H, Chang C, Fu P, Lin C, Chiu Y, Chi S. SU-E-E-09: The Novel Investigation of the Accuracy of Image Position for Liver During Respiration in Helical CT. Med Phys 2015. [DOI: 10.1118/1.4923931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Lafay-Cousin L, Chi S, Smith A, Wells E, Madden J, Margol A, Ramaswamy V, Owen E, Strother D, Dhall G, Foreman N, Packer R, Bouffet E. MB-35 * VERY ENCOURAGING LONG-TERM SURVIVAL AND NEUROCOGNITIVE OUTCOME OF YOUNG CHILDREN TREATED FOR MEDULLOBLASTOMA WITH SEQUENTIAL HIGH DOSE CHEMOTHERAPY. Neuro Oncol 2015. [DOI: 10.1093/neuonc/nov061.111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Durand AM, Belanger DP, Hamil TJ, Ye F, Chi S, Fernandez-Baca JA, Booth CH, Abdollahian Y, Bhat M. The unusual magnetism of nanoparticle LaCoO3. J Phys Condens Matter 2015; 27:176003. [PMID: 25872920 DOI: 10.1088/0953-8984/27/17/176003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Bulk and nanoparticle powders of LaCoO3 (LCO) were synthesized and their magnetic and structural properties were studied using SQUID magnetometry and neutron diffraction. The bulk and large nanoparticles exhibit weak ferromagnetism (FM) below T ≈ 85 K and a crossover from strong to weak antiferromagnetic (AFM) correlations near a transition expressed in the lattice parameters, To≈40 K. This crossover does not occur in the smallest nanoparticles; instead, the magnetic behavior is predominantly ferromagnetic. The amount of FM in the nanoparticles depends on the amount of Co3O4 impurity phase, which induces tensile strain on the LCO lattice. A core-interface model is introduced, with the core region exhibiting the AFM crossover and with FM in the interface region near surfaces and impurity phases.
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Affiliation(s)
- A M Durand
- Department of Physics, University of California, Santa Cruz, CA 95064, USA
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Lafay-Cousin L, Chi S, Smith A, Wells E, Madden J, Margol A, Ramaswamy V, Owen E, Strother D, Dhall G, Foreman N, Packer R, Bouffet E. PT-08 * VERY ENCOURAGING LONG TERM SURVIVAL AND NEUROCOGNITIVE OUTCOME OF YOUNG CHILDREN TREATED FOR MEDULLOBLASTOMA WITH SEQUENTIAL HIGH DOSE CHEMOTHERAPY. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou266.8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Chi S, Wu S, Yu J, Wang X, Tang X, Liu T. Phylogeny of C4-photosynthesis enzymes based on algal transcriptomic and genomic data supports an archaeal/proteobacterial origin and multiple duplication for most C4-related genes. PLoS One 2014; 9:e110154. [PMID: 25313828 PMCID: PMC4196954 DOI: 10.1371/journal.pone.0110154] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Accepted: 09/15/2014] [Indexed: 12/02/2022] Open
Abstract
Both Calvin-Benson-Bassham (C3) and Hatch-Slack (C4) cycles are most important autotrophic CO2 fixation pathways on today’s Earth. C3 cycle is believed to be originated from cyanobacterial endosymbiosis. However, studies on evolution of different biochemical variants of C4 photosynthesis are limited to tracheophytes and origins of C4-cycle genes are not clear till now. Our comprehensive analyses on bioinformatics and phylogenetics of novel transcriptomic sequencing data of 21 rhodophytes and 19 Phaeophyceae marine species and public genomic data of more algae, tracheophytes, cyanobacteria, proteobacteria and archaea revealed the origin and evolution of C4 cycle-related genes. Almost all of C4-related genes were annotated in extensive algal lineages with proteobacterial or archaeal origins, except for phosphoenolpyruvate carboxykinase (PCK) and aspartate aminotransferase (AST) with both cyanobacterial and archaeal/proteobacterial origin. Notably, cyanobacteria may not possess complete C4 pathway because of the flawed annotation of pyruvate orthophosphate dikinase (PPDK) genes in public data. Most C4 cycle-related genes endured duplication and gave rise to functional differentiation and adaptation in different algal lineages. C4-related genes of NAD-ME (NAD-malic enzyme) and PCK subtypes exist in most algae and may be primitive ones, while NADP-ME (NADP-malic enzyme) subtype genes might evolve from NAD-ME subtype by gene duplication in chlorophytes and tracheophytes.
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Affiliation(s)
- Shan Chi
- Ocean University of China, Qingdao, Shandong Province, People’s Republic of China
| | - Shuangxiu Wu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, P. R. China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
| | - Jun Yu
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, P. R. China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
| | - Xumin Wang
- CAS Key Laboratory of Genome Sciences and Information, Beijing Key Laboratory of Genome and Precision Medicine Technologies, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, P. R. China
- Beijing Key Laboratory of Functional Genomics for Dao-di Herbs, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
- * E-mail: (XW); (TL)
| | - Xuexi Tang
- Ocean University of China, Qingdao, Shandong Province, People’s Republic of China
| | - Tao Liu
- Ocean University of China, Qingdao, Shandong Province, People’s Republic of China
- * E-mail: (XW); (TL)
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Mitamura H, Watanuki R, Kaneko K, Onozaki N, Amou Y, Kittaka S, Kobayashi R, Shimura Y, Yamamoto I, Suzuki K, Chi S, Sakakibara T. Spin-chirality-driven ferroelectricity on a perfect triangular lattice antiferromagnet. Phys Rev Lett 2014; 113:147202. [PMID: 25325654 DOI: 10.1103/physrevlett.113.147202] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Indexed: 06/04/2023]
Abstract
Magnetic field (B) variation of the electrical polarization P(c) (∥c) of the perfect triangular lattice antiferromagnet RbFe(MoO(4))(2) is examined up to the saturation point of the magnetization for B⊥c. P(c) is observed only in phases for which chirality is predicted in the in-plane magnetic structures. No strong anomaly is observed in P(c) at the field at which the spin modulation along the c axis, and hence the spin helicity, exhibits a discontinuity to the commensurate state. These results indicate that the ferroelectricity in this compound originates predominantly from the spin chirality, the explanation of which would require a new mechanism for magnetoferroelectricity. The obtained field-temperature phase diagram of ferroelectricity agree well with those theoretically predicted for the spin chirality of a Heisenberg spin triangular lattice antiferromagnet.
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Affiliation(s)
- H Mitamura
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
| | - R Watanuki
- Faculty of Engineering, Yokohama National University, Yokohama 240-8501, Japan
| | - K Kaneko
- Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Naka, Ibaraki 319-1195, Japan
| | - N Onozaki
- Faculty of Engineering, Yokohama National University, Yokohama 240-8501, Japan
| | - Y Amou
- Faculty of Engineering, Yokohama National University, Yokohama 240-8501, Japan
| | - S Kittaka
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
| | - R Kobayashi
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan and Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Y Shimura
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
| | - I Yamamoto
- Faculty of Engineering, Yokohama National University, Yokohama 240-8501, Japan
| | - K Suzuki
- Faculty of Engineering, Yokohama National University, Yokohama 240-8501, Japan
| | - S Chi
- Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - T Sakakibara
- Institute for Solid State Physics, The University of Tokyo, Kashiwa, Chiba 277-8581, Japan
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Kieran MW, Yao X, Macy M, Leary S, Cohen K, MacDonald T, Allen J, Boklan J, Smith A, Nazemi K, Gore L, Trippett T, DiRenzo J, Narendran A, Perentesis J, Prabhu S, Pinches N, Robison N, Manley P, Chi S. FINAL RESULTS OF A PROSPECTIVE MULTI-INSTITUTIONAL PHASE II STUDY OF EVEROLIMUS (RAD001), AN MTOR INHIBITOR, IN PEDIATRIC PATIENTS WITH RECURRENT OR PROGRESSIVE LOW-GRADE GLIOMA. A POETIC CONSORTIUM TRIAL. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou208.15] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Jiang CY, Tong X, Brown DR, Chi S, Christianson AD, Kadron BJ, Robertson JL, Winn BL. Development of a compact in situ polarized ³He neutron spin filter at Oak Ridge National Laboratory. Rev Sci Instrum 2014; 85:075112. [PMID: 25085178 DOI: 10.1063/1.4890391] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We constructed a compact in situ polarized (3)He neutron spin filter based on spin-exchange optical pumping which is capable of continuous pumping of the (3)He gas while the system is in place in the neutron beam on an instrument. The compact size and light weight of the system simplifies its utilization on various neutron instruments. The system has been successfully tested as a neutron polarizer on the triple-axis spectrometer (HB3) and the hybrid spectrometer (HYSPEC) at Oak Ridge National Laboratory. Over 70% (3)He polarization was achieved and maintained during the test experiments. Over 90% neutron polarization and an average of 25% transmission for neutrons of 14.7 meV and 15 meV was also obtained.
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Affiliation(s)
- C Y Jiang
- Instrument and Source Design Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - X Tong
- Instrument and Source Design Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - D R Brown
- Instrument and Source Design Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - S Chi
- Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - A D Christianson
- Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - B J Kadron
- Instrument and Source Design Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - J L Robertson
- Instrument and Source Design Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - B L Winn
- Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
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Goldman S, Fangusaro J, Lulla R, Chi S, Manley P, Robison N, Kroon HA, Kieran M. PHASE I INDIVIDUAL DOSE TITRATION TRIAL OF THE HUMAN CORTICOTROPIN-RELEASING FACTOR (HCRF), CORTICORELIN ACETATE INJECTION (XERECEPT) IN PEDIATRIC PATIENTS WITH PERITUMORAL EDEMA OF THE BRAIN. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou208.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Shofty B, Bokstein F, Ram Z, Ben-Sira L, Freedman S, Kesler A, Constantini S, Shofty B, Mauda-Havakuk M, Ben-Bashat D, Dvir R, Pratt LT, Weizman L, Joskowicz L, Tal M, Ravid L, Ben-Sira L, Constantini S, Dodgshun A, Maixner W, Sullivan M, Hansford J, Ma J, Wang B, Toledano H, Muhsinoglu O, Luckman J, Michowiz S, Goldenberg-Cohen N, Schroeder K, Rosenfeld A, Grant G, McLendon R, Cummings T, Becher O, Gururangan S, Aguilera D, Mazewski C, Janss A, Castellino RC, Schniederjan M, Hayes L, Brahma B, MacDonald T, Osugi Y, Kiyotani C, Sakamoto H, Yanagisawa T, Kanno M, Kamimura S, Kosaka Y, Hirado J, Takimoto T, Nakazawa A, Hara J, Hwang E, Mun A, Kilburn L, Chi S, Knipstein J, Oren M, Dvir R, Hardy K, Rood B, Packer R, Kandels D, Schmidt R, Geh M, Breitmoser-Greiner S, Gnekow AK, Bergthold G, Bandopadhayay P, Rich B, Chan J, Santagata S, Hoshida Y, Ramkissoon S, Ramkissoon L, Golub T, Tabak B, Ferrer-Luna R, Weng PY, Stiles C, Grill J, Kieran MW, Ligon KL, Beroukhim R, Fisher MJ, Levin MH, Armstrong GT, Broad JH, Zimmerman R, Bilaniuk LT, Feygin T, Liu GT, Gan HW, Phipps K, Spoudeas HA, Kohorst M, Warad D, Keating G, Childs S, Giannini C, Wetjen N, Rao; AN, Nakamura H, Makino K, Hide T, Kuroda JI, Shinojima N, Yano S, Kuratsu JI, Rush S, Madden J, Hemenway M, Foreman N, Sie M, den Dunnen WFA, Lourens HJ, Meeuwsen-de Boer TGJ, Scherpen FJG, Kampen KR, Hoving EW, de Bont ESJM, Gnekow AK, Kandels D, Walker DA, Perilongo G, Grill J, Stokland T, Sehested AM, van Schouten AYN, de Paoli A, de Salvo GL, Pache-Leschhorn S, Geh M, Schmidt R, Gnekow AK, Gass D, Rupani K, Tsankova N, Stark E, Anderson R, Feldstein N, Garvin J, Deel M, McLendon R, Becher O, Karajannis M, Wisoff J, Muh C, Schroeder K, Gururangan S, del Bufalo F, Carai A, Macchiaiolo M, Messina R, Cacchione A, Palmiero M, Cambiaso P, Mastronuzzi A, Anderson M, Leary S, Sun Y, Buhrlage S, Pilarz C, Alberta J, Stiles C, Gray N, Mason G, Packer R, Hwang E, Biassoni V, Schiavello E, Bergamaschi L, Chiaravalli S, Spreafico F, Massimino M, Krishnatry R, Kroupnik T, Zhukova N, Mistry M, Zhang C, Bartels U, Huang A, Adamski J, Dirks P, Laperriere N, Silber J, Hawkins C, Bouffet E, Tabori U, Riccardi R, Rizzo D, Chiaretti A, Piccardi M, Dickmann A, Lazzareschi I, Ruggiero A, Guglielmi G, Salerni A, Manni L, Colosimo C, Falsini B, Rosenfeld A, Etzl M, Miller J, Carpenteri D, Kaplan A, Sieow N, Hoe R, Tan AM, Chan MY, Soh SY, Orphanidou-Vlachou E, MacPherson L, English M, Auer D, Jaspan T, Arvanitis T, Grundy R, Peet A, Bandopadhayay P, Bergthold G, Sauer N, Green A, Malkin H, Dabscheck G, Marcus K, Ullrich N, Goumnerova L, Chi S, Beroukhim R, Kieran M, Manley P, Donson A, Kleinschmidt-DeMasters B, Aisner D, Bemis L, Birks D, Mulcahy-Levy J, Smith A, Handler M, Rush S, Foreman N, Davidson A, Figaji A, Pillay K, Kilborn T, Padayachy L, Hendricks M, van Eyssen A, Parkes J, Gass D, Dewire M, Chow L, Rose SR, Lawson S, Stevenson C, Jones B, Pai A, Sutton M, Pruitt D, Fouladi M, Hummel T, Cruz O, de Torres C, Sunol M, Morales A, Santiago C, Alamar M, Rebollo M, Mora J, Sauer N, Dodgshun A, Malkin H, Bergthold G, Manley P, Chi S, Ramkissoon S, MacGregor D, Beroukhim R, Kieran M, Sullivan M, Ligon K, Bandopadhayay P, Hansford J, Messina R, De Benedictis A, Carai A, Mastronuzzi A, Rebessi E, Palma P, Procaccini E, Marras CE, Aguilera D, Castellino RC, Janss A, Schniederjan M, McNall R, Kim S, MacDOnald T, Mazewski C, Zhukova N, Pole J, Mistry M, Fried I, Krishnatry R, Stucklin AG, Bartels U, Huang A, Laperriere N, Dirks P, Zelcer S, Sylva M, Johnston D, Scheinemann K, An J, Hawkins C, Nathan P, Greenberg M, Bouffet E, Malkin D, Tabori U, Kiehna E, Da Silva S, Margol A, Robison N, Finlay J, McComb JG, Krieger M, Wong K, Bluml S, Dhall G, Ayyanar K, Moriarty T, Moeller K, Farber D. LOW GRADE GLIOMAS. Neuro Oncol 2014; 16:i60-i70. [PMCID: PMC4046289 DOI: 10.1093/neuonc/nou073] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2023] Open
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Classen CF, William D, Linnebacher M, Farhod A, Kedr W, Elsabe B, Fadel S, Van Gool S, De Vleeschouwer S, Koks C, Garg A, Ehrhardt M, Riva M, De Vleeschouwer S, Agostinis P, Graf N, Van Gool S, Yao TW, Yoshida Y, Zhang J, Ozawa T, James D, Nicolaides T, Kebudi R, Cakir FB, Gorgun O, Agaoglu FY, Darendeliler E, Van Gool S, De Vleeschouwer S, Al-Kofide A, Al-Shail E, Khafaga Y, Al-Hindi H, Dababo M, Haq AU, Anas M, Barria MG, Siddiqui K, Hassounah M, Ayas M, van Zanten SV, Jansen M, van Vuurden D, Huisman M, Vugts D, Hoekstra O, van Dongen G, Kaspers G, Cockle J, Ilett E, Scott K, Bruning-Richardson A, Picton S, Short S, Melcher A, Benesch M, Warmuth-Metz M, von Bueren AO, Hoffmann M, Pietsch T, Kortmann RD, Eyrich M, Graf N, Rutkowski S, Fruhwald MC, Faber J, Kramm C, Porkholm M, Valanne L, Lonnqvist T, Holm S, Lannering B, Riikonen P, Wojcik D, Sehested A, Clausen N, Harila-Saari A, Schomerus E, Thorarinsdottir HK, Lahteenmaki P, Arola M, Thomassen H, Saarinen-Pihkala UM, Kivivuori SM, Buczkowicz P, Hoeman C, Rakopoulos P, Pajovic S, Morrison A, Bouffet E, Bartels U, Becher O, Hawkins C, Gould TWA, Rahman CV, Smith SJ, Barrett DA, Shakesheff KM, Grundy RG, Rahman R, Barua N, Cronin D, Gill S, Lowisl S, Hochart A, Maurage CA, Rocourt N, Vinchon M, Kerdraon O, Escande F, Grill J, Pick VK, Leblond P, Burzynski G, Janicki T, Burzynski S, Marszalek A, Ramani N, Zaky W, Kannan G, Morani A, Sandberg D, Ketonen L, Maher O, Corrales-Medina F, Meador H, Khatua S, Brassesco M, Delsin L, Roberto G, Silva C, Ana L, Rego E, Scrideli C, Umezawa K, Tone L, Kim SJ, Kim CY, Kim IA, Han JH, Choi BS, Ahn HS, Choi HS, Haque F, Rahman R, Layfield R, Grundy R, Gandola L, Pecori E, Biassoni V, Schiavello E, Chiruzzi C, Spreafico F, Modena P, Bach F, Pignoli E, Massimino M, Drogosiewicz M, Dembowska-Baginska B, Jurkiewicz E, Filipek I, Perek-Polnik M, Swieszkowska E, Perek D, Bender S, Jones DT, Warnatz HJ, Hutter B, Zichner T, Gronych J, Korshunov A, Eils R, Korbel JO, Yaspo ML, Lichter P, Pfister SM, Yadavilli S, Becher OJ, Kambhampati M, Packer RJ, Nazarian J, Lechon FC, Fowkes L, Khabra K, Martin-Retortillo LM, Marshall LV, Vaidya S, Koh DM, Leach MO, Pearson AD, Zacharoulis S, Lechon FC, Fowkes L, Khabra K, Martin-Retortillo LM, Marshall LV, Schrey D, Barone G, Vaidya S, Koh DM, Pearson AD, Zacharoulis S, Panditharatna E, Stampar M, Siu A, Gordish-Dressman H, Devaney J, Kambhampati M, Hwang EI, Packer RJ, Nazarian J, Chung AH, Mittapalli RK, Elmquist WF, Becher OJ, Castel D, Debily MA, Philippe C, Truffaux N, Taylor K, Calmon R, Boddaert N, Le Dret L, Saulnier P, Lacroix L, Mackay A, Jones C, Puget S, Sainte-Rose C, Blauwblomme T, Varlet P, Grill J, Entz-Werle N, Maugard C, Bougeard G, Nguyen A, Chenard MP, Schneider A, Gaub MP, Tsoli M, Vanniasinghe A, Luk P, Dilda P, Haber M, Hogg P, Ziegler D, Simon S, Tsoli M, Vanniasinghe A, Monje M, Gurova K, Gudkov A, Haber M, Ziegler D, Zapotocky M, Churackova M, Malinova B, Zamecnik J, Kyncl M, Tichy M, Puchmajerova A, Stary J, Sumerauer D, Boult J, Vinci M, Taylor K, Perryman L, Box G, Jury A, Popov S, Ingram W, Monje M, Eccles S, Jones C, Robinson S, Emir S, Demir HA, Bayram C, Cetindag F, Kabacam GB, Fettah A, Boult J, Li J, Vinci M, Jury A, Popov S, Jamin Y, Cummings C, Eccles S, Bamber J, Sinkus R, Jones C, Robinson S, Nandhabalan M, Bjerke L, Vinci M, Burford A, Ingram W, Mackay A, von Bueren A, Baudis M, Clarke P, Collins I, Workman P, Jones C, Taylor K, Mackay A, Vinci M, Popov S, Ingram W, Entz-Werle N, Monje M, Olaciregui N, Mora J, Carcaboso A, Bullock A, Jones C, Vinci M, Mackay A, Burford A, Taylor K, Popov S, Ingram W, Monje M, Alonso M, Olaciregui N, de Torres C, Cruz O, Mora J, Carcaboso A, Jones C, Filipek I, Drogosiewicz M, Perek-Polnik M, Swieszkowska E, Dembowska-Baginska B, Jurkiewicz E, Perek D, Nguyen A, Pencreach E, Mackay A, Moussalieh FM, Guenot D, Namer I, Chenard MP, Jones C, Entz-Werle N, Pollack I, Jakacki R, Butterfield L, Hamilton R, Panigrahy A, Potter D, Connelly A, Dibridge S, Whiteside T, Okada H, Ahsan S, Raabe E, Haffner M, Warren K, Quezado M, Ballester L, Nazarian J, Eberhart C, Rodriguez F, Ramachandran C, Nair S, Quirrin KW, Khatib Z, Escalon E, Melnick S, Classen CF, Hofmann M, Schmid I, Simon T, Maass E, Russo A, Fleischhack G, Becker M, Hauch H, Sander A, Kramm C, Grasso C, Truffaux N, Berlow N, Liu L, Debily MA, Davis L, Huang E, Woo P, Tang Y, Ponnuswami A, Chen S, Huang Y, Hutt-Cabezas M, Warren K, Dret L, Meltzer P, Mao H, Quezado M, van Vuurden D, Abraham J, Fouladi M, Svalina MN, Wang N, Hawkins C, Raabe E, Hulleman E, Li XN, Keller C, Spellman PT, Pal R, Grill J, Monje M, Jansen MHA, Sewing ACP, Lagerweij T, Vuchts DJ, van Vuurden DG, Caretti V, Wesseling P, Kaspers GJL, Hulleman E, Cohen K, Raabe E, Pearl M, Kogiso M, Zhang L, Qi L, Lindsay H, Lin F, Berg S, Li XN, Muscal J, Amayiri N, Tabori U, Campbel B, Bakry D, Aronson M, Durno C, Gallinger S, Malkin D, Qaddumi I, Musharbash A, Swaidan M, Bouffet E, Hawkins C, Al-Hussaini M, Rakopoulos P, Shandilya S, McCully C, Murphy R, Akshintala S, Cole D, Macallister RP, Cruz R, Widemann B, Warren K, Salloum R, Smith A, Glaunert M, Ramkissoon A, Peterson S, Baker S, Chow L, Sandgren J, Pfeifer S, Popova S, Alafuzoff I, de Stahl TD, Pietschmann S, Kerber MJ, Zwiener I, Henke G, Kortmann RD, Muller K, von Bueren A, Sieow NYF, Hoe RHM, Tan AM, Chan MY, Soh SY, Hawkins C, Burrell K, Chornenkyy Y, Remke M, Golbourn B, Buczkowicz P, Barzczyk M, Taylor M, Rutka J, Dirks P, Zadeh G, Agnihotri S, Hashizume R, Ihara Y, Andor N, Chen X, Lerner R, Huang X, Tom M, Solomon D, Mueller S, Petritsch C, Zhang Z, Gupta N, Waldman T, James D, Dujua A, Co J, Hernandez F, Doromal D, Hegde M, Wakefield A, Brawley V, Grada Z, Byrd T, Chow K, Krebs S, Heslop H, Gottschalk S, Yvon E, Ahmed N, Truffaux N, Philippe C, Cornilleau G, Paulsson J, Andreiuolo F, Guerrini-Rousseau L, Puget S, Geoerger B, Vassal G, Ostman A, Grill J, Parsons DW, Lin F, Trevino LR, Gao F, Shen X, Hampton O, Lindsay H, Kosigo M, Qi L, Baxter PA, Su JM, Chintagumpala M, Dauser R, Adesina A, Plon SE, Li XN, Wheeler DA, Lau CC, Pietsch T, Gielen G, Muehlen AZ, Kwiecien R, Wolff J, Kramm C, Lulla RR, Laskowski J, Goldman S, Gopalakrishnan V, Fangusaro J, Mackay A, Taylor K, Vinci M, Jones C, Kieran M, Fontebasso A, Papillon-Cavanagh S, Schwartzentruber J, Nikbakht H, Gerges N, Fiset PO, Bechet D, Faury D, De Jay N, Ramkissoon L, Corcoran A, Jones D, Sturm D, Johann P, Tomita T, Goldman S, Nagib M, Bendel A, Goumnerova L, Bowers DC, Leonard JR, Rubin JB, Alden T, DiPatri A, Browd S, Leary S, Jallo G, Cohen K, Prados MD, Banerjee A, Carret AS, Ellezam B, Crevier L, Klekner A, Bognar L, Hauser P, Garami M, Myseros J, Dong Z, Siegel PM, Gump W, Ayyanar K, Ragheb J, Khatib Z, Krieger M, Kiehna E, Robison N, Harter D, Gardner S, Handler M, Foreman N, Brahma B, MacDonald T, Malkin H, Chi S, Manley P, Bandopadhayay P, Greenspan L, Ligon A, Albrecht S, Pfister SM, Ligon KL, Majewski J, Gupta N, Jabado N, Hoeman C, Cordero F, Halvorson K, Hawkins C, Becher O, Taylor I, Hutt M, Weingart M, Price A, Nazarian J, Eberhart C, Raabe E, Kantar M, Onen S, Kamer S, Turhan T, Kitis O, Ertan Y, Cetingul N, Anacak Y, Akalin T, Ersahin Y, Mason G, Nazarian J, Ho C, Devaney J, Stampar M, Kambhampati M, Crozier F, Vezina G, Packer R, Hwang E, Gilheeney S, Millard N, DeBraganca K, Khakoo Y, Kramer K, Wolden S, Donzelli M, Fischer C, Petriccione M, Dunkel I, Afzal S, Carret AS, Fleming A, Larouche V, Zelcer S, Johnston DL, Kostova M, Mpofu C, Decarie JC, Strother D, Lafay-Cousin L, Eisenstat D, Fryer C, Hukin J, Bartels U, Bouffet E, Hsu M, Lasky J, Moore T, Liau L, Davidson T, Prins R, Fouladi M, Bartels U, Warren K, Hassal T, Baugh J, Kirkendall J, Doughman R, Leach J, Jones B, Miles L, Hawkins C, Bouffet E, Hargrave D, Grill J, Jones C, Jacques T, Savage S, Goldman S, Leary S, Packer R, Saunders D, Wesseling P, Varlet P, van Vuurden D, Wallace R, Flutter B, Morgenestern D, Hargrave D, Blanco E, Howe K, Lowdell M, Samuel E, Michalski A, Anderson J, Arakawa Y, Umeda K, Watanabe KI, Mizowaki T, Hiraoka M, Hiramatsu H, Adachi S, Kunieda T, Takagi Y, Miyamoto S, Venneti S, Santi M, Felicella MM, Sullivan LM, Dolgalev I, Martinez D, Perry A, Lewis PW, Allis DC, Thompson CB, Judkins AR. HIGH GRADE GLIOMAS AND DIPG. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Bertozzi AI, Munzer C, Fouyssac F, Andre N, Boetto S, Leblond P, Bourdeaut F, Dufour C, Deshpande RK, Bhat KG, Mahalingam S, Muscat A, Cain J, Ferguson M, Popovski D, Algar E, Rossello FJ, Jayasekara S, Watkins DN, Hodge J, Ashley D, Hishii M, Saito M, Arai H, Han ZY, Richer W, Lucchesi C, Freneaux P, Nicolas A, Grison C, Pierron G, Delattre O, Bourdeaut F, Epari S, TS N, Gupta T, Chinnaswamy G, Sastri JG, Shetty P, Moiyadi A, Jalali R, Fay-McClymont T, Johnston D, Janzen L, Guger S, Scheinemann K, Fleming A, Fryer C, Hukin J, Mabbott D, Huang A, Bouffet E, Lafay-Cousin L, Kawamura A, Yamamoto K, Nagashima T, Bartelheim K, Benesch M, Buchner J, Gerss J, Hasselblatt M, Kortmann RD, Fleischack G, Quiroga E, Reinhard H, Schneppenheim R, Seeringer A, Siebert R, Timmermann B, Warmuth-Metz M, Schmid I, Fruhwald MC, Fruhwald MC, Bartelheim K, Seeringer A, Kerl K, Kortmann RD, Warmuth-Metz M, Hasselblatt M, Schneppenheim R, Siebert R, Klingebiel T, Al-Kofide A, Khafaga Y, Al-Hindi H, Dababo M, Ul-Haq A, Anas M, Barria MG, Siddiqui K, Hassounah M, Ayas M, Al-Shail E, Hasselblatt M, Jeibmann A, Eikmeier K, Linge A, Johann P, Koos B, Bartelheim K, Kool M, Pfister SM, Fruhwald MC, Paulus W, Hasselblatt M, Schuller U, Junckerstorff R, Rosenblum MK, Alassiri AH, Rossi S, Bartelheim K, Schmid I, Gottardo N, Toledano H, Viscardi E, Witkowski L, Nagel I, Oyen F, Foulkes WD, Paulus W, Siebert R, Schneppenheim R, Fruhwald MC, Schrey D, Malietzis G, Chi S, Dufour C, Lafay-Cousin L, Marshall L, Carceller F, Moreno L, Zacharoulis S, Bhardwaj R, Chakravadhanula M, Ozals V, Hampton C, Metpally R, Grillner P, Asmundsson J, Gustavsson B, Holm S, Johann PD, Korshunov A, Ryzhova M, Kerl K, Milde T, Witt O, Jones DTW, Hovestadt V, Gajjar A, Hasselblatt M, Fruhwald M, Pfister S, Kool M, Finetti M, Pons ADC, Selby M, Smith A, Crosier S, Wood J, Skalkoyannis B, Bailey S, Clifford S, Williamson D, Seeringer A, Bartelheim K, Kerl K, Hasselblatt M, Rutkowski S, Timmermann B, Kortmann RD, Schneppenheim R, Warmuth-Metz M, Gerss J, Siebert R, Graf N, Boos J, Nysom K, Fruhwald MC, Kerl K, Moreno N, Holsten T, Ahlfeld J, Mertins J, Hotfilder M, Kool M, Bartelheim K, Schleicher S, Handgretinger R, Fruhwald M, Meisterernst M, Kerl K, Schmidt C, Ahlfeld J, Moreno N, Dittmar S, Pfister S, Fruhwald M, Kool M, Meisterernst M, Schuller U, Chan GCF, Shing MMK, Yuen HL, Li RCH, Ling SL, Slavc I, Peyrl A, Chocholous M, Azizi A, Czech T, Dieckmann K, Haberler C, Leiss U, Gotti G, Biassoni V, Schiavello E, Spreafico F, Pecori E, Gandola L, Massimino M, Mertins J, Kornelius K, Moreno N, Holsten T, Fruhwald M, Kool M, Meisterernst M, Yano H, Nakayama N, Ohe N, Ozeki M, Kanda K, Kimura T, Hori T, Fukao T, Iwama T, Weil AG, Diaz A, Gernsback J, Bhatia S, Ragheb J, Niazi T, Khatib Z, Kerl K, Holsten T, Moreno N, Zoghbi A, Meisterernst AM, Birks D, Griesinger A, Amani V, Donson A, Posner R, Dunham C, Kleinschmidt-DeMasters BK, Handler M, Vibhakar R, Foreman N, Bhardwaj R, Ozals V, Hampton C, Zhou L, Catchpoole D, Chakravadhanula M, Kakkar A, Biswas A, Suri V, Sharma M, Kale S, Mahapatra A, Sarkar C, Torchia J, Picard D, Ho KC, Khuong-Quang DA, Louterneau L, Bourgey M, Chan T, Golbourn B, Cousin LL, Taylor MD, Dirks P, Rutka JT, Bouffet E, Hawkins C, Majewski J, Kim SK, Jabado N, Huang A, Chang JHC, Confer M, Chang A, Goldman S, Dunn M, Hartsell W. ATYPICAL TERATOID RHABDOID TUMOUR. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Vaidyanathan G, Gururangan S, Bigner D, Zalutsky M, Morfouace M, Shelat A, Megan J, Freeman BB, Robinson S, Throm S, Olson JM, Li XN, Guy KR, Robinson G, Stewart C, Gajjar A, Roussel M, Sirachainan N, Pakakasama S, Anurathapan U, Hansasuta A, Dhanachai M, Khongkhatithum C, Hongeng S, Feroze A, Lee KS, Gholamin S, Wu Z, Lu B, Mitra S, Cheshier S, Northcott P, Lee C, Zichner T, Lichter P, Korbel J, Wechsler-Reya R, Pfister S, Project IPT, Li KKW, Xia T, Ma FMT, Zhang R, Zhou L, Lau KM, Ng HK, Lafay-Cousin L, Chi S, Madden J, Smith A, Wells E, Owens E, Strother D, Foreman N, Packer R, Bouffet E, Wataya T, Peacock J, Taylor MD, Ivanov D, Garnett M, Parker T, Alexander C, Meijer L, Grundy R, Gellert P, Ashford M, Walker D, Brent J, Cader FZ, Ford D, Kay A, Walsh R, Solanki G, Peet A, English M, Shalaby T, Fiaschetti G, Baulande S, Gerber N, Baumgartner M, Grotzer M, Hayase T, Kawahara Y, Yagi M, Minami T, Kanai N, Yamaguchi T, Gomi A, Morimoto A, Hill R, Kuijper S, Lindsey J, Schwalbe E, Barker K, Boult J, Williamson D, Ahmad Z, Hallsworth A, Ryan S, Poon E, Robinson S, Ruddle R, Raynaud F, Howell L, Kwok C, Joshi A, Nicholson SL, Crosier S, Wharton S, Robson K, Michalski A, Hargrave D, Jacques T, Pizer B, Bailey S, Swartling F, Petrie K, Weiss W, Chesler L, Clifford S, Kitanovski L, Prelog T, Kotnik BF, Debeljak M, Fiaschetti G, Shalaby T, Baumgartner M, Grotzer MA, Gevorgian A, Morozova E, Kazantsev I, Iukhta T, Safonova S, Kumirova E, Punanov Y, Afanasyev B, Zheludkova O, Grajkowska W, Pronicki M, Cukrowska B, Dembowska-Baginska B, Lastowska M, Murase A, Nobusawa S, Gemma Y, Yamazaki F, Masuzawa A, Uno T, Osumi T, Shioda Y, Kiyotani C, Mori T, Matsumoto K, Ogiwara H, Morota N, Hirato J, Nakazawa A, Terashima K, Fay-McClymont T, Walsh K, Mabbott D, Smith A, Wells E, Madden J, Chi S, Owens E, Strother D, Packer R, Foreman N, Bouffet E, Lafay-Cousin L, Sturm D, Northcott PA, Jones DTW, Korshunov A, Lichter P, Pfister SM, Kool M, Hooper C, Hawes S, Kees U, Gottardo N, Dallas P, Siegfried A, Bertozzi AI, Sevely A, Loukh N, Munzer C, Miquel C, Bourdeaut F, Pietsch T, Dufour C, Delisle MB, Kawauchi D, Rehg J, Finkelstein D, Zindy F, Phoenix T, Gilbertson R, Pfister S, Roussel M, Trubicka J, Borucka-Mankiewicz M, Ciara E, Chrzanowska K, Perek-Polnik M, Abramczuk-Piekutowska D, Grajkowska W, Jurkiewicz D, Luczak S, Kowalski P, Krajewska-Walasek M, Lastowska M, Sheila C, Lee S, Foster C, Manoranjan B, Pambit M, Berns R, Fotovati A, Venugopal C, O'Halloran K, Narendran A, Hawkins C, Ramaswamy V, Bouffet E, Taylor M, Singhal A, Hukin J, Rassekh R, Yip S, Northcott P, Singh S, Duhman C, Dunn S, Chen T, Rush S, Fuji H, Ishida Y, Onoe T, Kanda T, Kase Y, Yamashita H, Murayama S, Nakasu Y, Kurimoto T, Kondo A, Sakaguchi S, Fujimura J, Saito M, Arakawa T, Arai H, Shimizu T, Lastowska M, Jurkiewicz E, Daszkiewicz P, Drogosiewicz M, Trubicka J, Grajkowska W, Pronicki M, Kool M, Sturm D, Jones DTW, Hovestadt V, Buchhalter I, Jager NN, Stuetz A, Johann P, Schmidt C, Ryzhova M, Landgraf P, Hasselblatt M, Schuller U, Yaspo ML, von Deimling A, Korbel J, Eils R, Lichter P, Korshunov A, Pfister S, Modi A, Patel M, Berk M, Wang LX, Plautz G, Camara-Costa H, Resch A, Lalande C, Kieffer V, Poggi G, Kennedy C, Bull K, Calaminus G, Grill J, Doz F, Rutkowski S, Massimino M, Kortmann RD, Lannering B, Dellatolas G, Chevignard M, Lindsey J, Kawauchi D, Schwalbe E, Solecki D, McKinnon P, Olson J, Hayden J, Grundy R, Ellison D, Williamson D, Bailey S, Roussel M, Clifford S, Buss M, Remke M, Lee J, Caspary T, Taylor M, Castellino R, Lannering B, Sabel M, Gustafsson G, Fleischhack G, Benesch M, Doz F, Kortmann RD, Massimino M, Navajas A, Reddingius R, Rutkowski S, Miquel C, Delisle MB, Dufour C, Lafon D, Sevenet N, Pierron G, Delattre O, Bourdeaut F, Ecker J, Oehme I, Mazitschek R, Korshunov A, Kool M, Lodrini M, Deubzer HE, von Deimling A, Kulozik AE, Pfister SM, Witt O, Milde T, Phoenix T, Patmore D, Boulos N, Wright K, Boop S, Gilbertson R, Janicki T, Burzynski S, Burzynski G, Marszalek A, Triscott J, Green M, Foster C, Fotovati A, Berns R, O'Halloran K, Singhal A, Hukin J, Rassekh SR, Yip S, Toyota B, Dunham C, Dunn SE, Liu KW, Pei Y, Wechsler-Reya R, Genovesi L, Ji P, Davis M, Ng CG, Remke M, Taylor M, Cho YJ, Jenkins N, Copeland N, Wainwright B, Tang Y, Schubert S, Nguyen B, Masoud S, Gholamin S, Lee A, Willardson M, Bandopadhayay P, Bergthold G, Atwood S, Whitson R, Cheshier S, Qi J, Beroukhim R, Tang J, Wechsler-Reya R, Oro A, Link B, Bradner J, Cho YJ, Vallero SG, Bertin D, Basso ME, Milanaccio C, Peretta P, Cama A, Mussano A, Barra S, Morana G, Morra I, Nozza P, Fagioli F, Garre ML, Darabi A, Sanden E, Visse E, Stahl N, Siesjo P, Cho YJ, Vaka D, Schubert S, Vasquez F, Weir B, Cowley G, Keller C, Hahn W, Gibbs IC, Partap S, Yeom K, Martinez M, Vogel H, Donaldson SS, Fisher P, Perreault S, Cho YJ, Guerrini-Rousseau L, Dufour C, Pujet S, Kieffer-Renaux V, Raquin MA, Varlet P, Longaud A, Sainte-Rose C, Valteau-Couanet D, Grill J, Staal J, Lau LS, Zhang H, Ingram WJ, Cho YJ, Hathout Y, Brown K, Rood BR, Sanden E, Visse E, Stahl N, Siesjo P, Darabi A, Handler M, Hankinson T, Madden J, Kleinschmidt-Demasters BK, Foreman N, Hutter S, Northcott PA, Kool M, Pfister S, Kawauchi D, Jones DT, Kagawa N, Hirayama R, Kijima N, Chiba Y, Kinoshita M, Takano K, Eino D, Fukuya S, Yamamoto F, Nakanishi K, Hashimoto N, Hashii Y, Hara J, Taylor MD, Yoshimine T, Wang J, Guo C, Yang Q, Chen Z, Perek-Polnik M, Lastowska M, Drogosiewicz M, Dembowska-Baginska B, Grajkowska W, Filipek I, Swieszkowska E, Tarasinska M, Perek D, Kebudi R, Koc B, Gorgun O, Agaoglu FY, Wolff J, Darendeliler E, Schmidt C, Kerl K, Gronych J, Kawauchi D, Lichter P, Schuller U, Pfister S, Kool M, McGlade J, Endersby R, Hii H, Johns T, Gottardo N, Sastry J, Murphy D, Ronghe M, Cunningham C, Cowie F, Jones R, Sastry J, Calisto A, Sangra M, Mathieson C, Brown J, Phuakpet K, Larouche V, Hawkins C, Bartels U, Bouffet E, Ishida T, Hasegawa D, Miyata K, Ochi S, Saito A, Kozaki A, Yanai T, Kawasaki K, Yamamoto K, Kawamura A, Nagashima T, Akasaka Y, Soejima T, Yoshida M, Kosaka Y, Rutkowski S, von Bueren A, Goschzik T, Kortmann R, von Hoff K, Friedrich C, Muehlen AZ, Gerber N, Warmuth-Metz M, Soerensen N, Deinlein F, Benesch M, Zwiener I, Faldum A, Kuehl J, Pietsch T, KRAMER K, -Taskar NP, Zanzonico P, Humm JL, Wolden SL, Cheung NKV, Venkataraman S, Alimova I, Harris P, Birks D, Balakrishnan I, Griesinger A, Remke M, Taylor MD, Handler M, Foreman NK, Vibhakar R, Margol A, Robison N, Gnanachandran J, Hung L, Kennedy R, Vali M, Dhall G, Finlay J, Erdrich-Epstein A, Krieger M, Drissi R, Fouladi M, Gilles F, Judkins A, Sposto R, Asgharzadeh S, Peyrl A, Chocholous M, Holm S, Grillner P, Blomgren K, Azizi A, Czech T, Gustafsson B, Dieckmann K, Leiss U, Slavc I, Babelyan S, Dolgopolov I, Pimenov R, Mentkevich G, Gorelishev S, Laskov M, Friedrich C, Warmuth-Metz M, von Bueren AO, Nowak J, von Hoff K, Pietsch T, Kortmann RD, Rutkowski S, Mynarek M, von Hoff K, Muller K, Friedrich C, von Bueren AO, Gerber NU, Benesch M, Pietsch T, Warmuth-Metz M, Ottensmeier H, Kwiecien R, Faldum A, Kuehl J, Kortmann RD, Rutkowski S, Mynarek M, von Hoff K, Muller K, Friedrich C, von Bueren AO, Gerber NU, Benesch M, Pietsch T, Warmuth-Metz M, Ottensmeier H, Kwiecien R, Faldum A, Kuehl J, Kortmann RD, Rutkowski S, Yankelevich M, Laskov M, Boyarshinov V, Glekov I, Pimenov R, Ozerov S, Gorelyshev S, Popa A, Dolgopolov I, Subbotina N, Mentkevich G, Martin AM, Nirschl C, Polanczyk M, Bell R, Martinez D, Sullivan LM, Santi M, Burger PC, Taube JM, Drake CG, Pardoll DM, Lim M, Li L, Wang WG, Pu JX, Sun HD, Remke M, Taylor MD, Ruggieri R, Symons MH, Vanan MI, Bandopadhayay P, Bergthold G, Nguyen B, Schubert S, Gholamin S, Tang Y, Bolin S, Schumacher S, Zeid R, Masoud S, Yu F, Vue N, Gibson W, Paolella B, Mitra S, Cheshier S, Qi J, Liu KW, Wechsler-Reya R, Weiss W, Swartling FJ, Kieran MW, Bradner JE, Beroukhim R, Cho YJ, Maher O, Khatua S, Tarek N, Zaky W, Gupta T, Mohanty S, Kannan S, Jalali R, Kapitza E, Denkhaus D, Muhlen AZ, Rutkowski S, Pietsch T, von Hoff K, Pizer B, Dufour C, van Vuurden DG, Garami M, Massimino M, Fangusaro J, Davidson TB, da Costa MJG, Sterba J, Benesch M, Gerber NU, Mynarek M, Kwiecien R, Clifford SC, Kool M, Pietsch T, Finlay JL, Rutkowski S, Pietsch T, Schmidt R, Remke M, Korshunov A, Hovestadt V, Jones DT, Felsberg J, Goschzik T, Kool M, Northcott PA, von Hoff K, von Bueren A, Skladny H, Taylor M, Cremer F, Lichter P, Faldum A, Reifenberger G, Rutkowski S, Pfister S, Kunder R, Jalali R, Sridhar E, Moiyadi AA, Goel A, Goel N, Shirsat N, Othman R, Storer L, Korshunov A, Pfister SM, Kerr I, Coyle B, Law N, Smith ML, Greenberg M, Bouffet E, Taylor MD, Laughlin S, Malkin D, Liu F, Moxon-Emre I, Scantlebury N, Mabbott D, Nasir A, Othman R, Storer L, Onion D, Lourdusamy A, Grabowska A, Coyle B, Cai Y, Othman R, Bradshaw T, Coyle B, de Medeiros RSS, Beaugrand A, Soares S, Epelman S, Jones DTW, Hovestadt V, Wang W, Northcott PA, Kool M, Sultan M, Landgraf P, Reifenberger G, Eils R, Yaspo ML, Wechsler-Reya RJ, Korshunov A, Zapatka M, Radlwimmer B, Pfister SM, Lichter P, Alderete D, Baroni L, Lubinieki F, Auad F, Gonzalez ML, Puya W, Pacheco P, Aurtenetxe O, Gaffar A, Gros L, Cruz O, Calvo C, Navajas A, Shinojima N, Nakamura H, Kuratsu JI, Hanaford A, Eberhart C, Archer T, Tamayo P, Pomeroy S, Raabe E, De Braganca K, Gilheeney S, Khakoo Y, Kramer K, Wolden S, Dunkel I, Lulla RR, Laskowski J, Fangusaro J, Goldman S, Gopalakrishnan V, Ramaswamy V, Remke M, Shih D, Wang X, Northcott P, Faria C, Raybaud C, Tabori U, Hawkins C, Rutka J, Taylor M, Bouffet E, Jacobs S, De Vathaire F, Diallo I, Llanas D, Verez C, Diop F, Kahlouche A, Grill J, Puget S, Valteau-Couanet D, Dufour C, Ramaswamy V, Thompson E, Taylor M, Pomeroy S, Archer T, Northcott P, Tamayo P, Prince E, Amani V, Griesinger A, Foreman N, Vibhakar R, Sin-Chan P, Lu M, Kleinman C, Spence T, Picard D, Ho KC, Chan J, Hawkins C, Majewski J, Jabado N, Dirks P, Huang A, Madden JR, Foreman NK, Donson AM, Mirsky DM, Wang X, Dubuc A, Korshunov A, Ramaswamy V, Remke M, Mack S, Gendoo D, Peacock J, Luu B, Cho YJ, Eberhart C, MacDonald T, Li XN, Van Meter T, Northcott P, Croul S, Bouffet E, Pfister S, Taylor M, Laureano A, Brugmann W, Denman C, Singh H, Huls H, Moyes J, Khatua S, Sandberg D, Silla L, Cooper L, Lee D, Gopalakrishnan V. MEDULLOBLASTOMA. Neuro Oncol 2014. [DOI: 10.1093/neuonc/nou074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Liao S, Mei J, Song W, Liu Y, Tan YD, Chi S, Li P, Chen X, Deng S. The impact of the International Association of Diabetes and Pregnancy Study Groups (IADPSG) fasting glucose diagnostic criterion on the prevalence and outcomes of gestational diabetes mellitus in Han Chinese women. Diabet Med 2014; 31:341-51. [PMID: 24152069 DOI: 10.1111/dme.12349] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Revised: 09/26/2013] [Accepted: 09/27/2013] [Indexed: 02/04/2023]
Abstract
AIMS The International Association of Diabetes and Pregnancy Study Groups (IADPSG) proposed that a one-time value of fasting plasma glucose of 5.1 mmol/l or over at any time of the pregnancy is sufficient to diagnose gestational diabetes. We evaluated the repercussions of the application of this threshold in pregnant Han Chinese women. METHODS This is a retrospective study of 5360 (72.3% of total) consecutively recruited pregnant Han Chinese women in one centre from 2008 to 2011. These women underwent a two-step gestational diabetes diagnostic protocol according to the previous American Diabetes Association criteria. The IADPSG fasting plasma glucose criterion was used to reclassify these 5360 women. The prevalence, clinical characteristics and obstetric outcomes were compared among the women classified as having gestational diabetes by the previous American Diabetes Association criteria (approximately 90% were treated), those reclassified as having gestational diabetes by the single IADPSG fasting plasma glucose criterion (untreated), but not as having gestational diabetes by the previous American Diabetes Association criteria, and those with normal glucose tolerance. RESULTS There were 626 cases of gestational diabetes defined by the previous American Diabetes Association criteria (11.7%) and these cases were associated with increased risks of maternal and neonatal outcomes when compared with the women with normal glucose tolerance. With the IADPSG fasting plasma glucose criterion, another 1314 (24.5%) women were reclassified as having gestational diabetes. Gestational diabetes classified by the IADPSG fasting plasma glucose criterion was associated with gestational hypertension (P = 0.0094) and neonatal admission to nursery (P = 0.035) prior to adjustment for maternal age and BMI, but was no longer a predictor for adverse pregnancy outcomes after adjustment. CONCLUSION The simple IADPSG fasting plasma glucose criterion increased the Chinese population with gestational diabetes by 200%. The increased population with gestational diabetes was not significantly associated with excess obstetric and neonatal morbidity.
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Affiliation(s)
- S Liao
- Diabetes Center, Sichuan Provincial People's Hospital, Sichuan University, Chengdu, China
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Li TY, Qu JQ, Feng YJ, Liu C, Chi S, Liu T. Complete mitochondrial genome of Undaria pinnatifida (Alariaceae, Laminariales, Phaeophyceae). Mitochondrial DNA 2014; 26:953-4. [PMID: 24409911 DOI: 10.3109/19401736.2013.865172] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Undaria pinnatifida is one of the most important economic marine algae and key components of coastal ecosystems. Undaria pinnatifida owns a typical heteromorphic, diplohaplontic life cycle. We present the complete sequence of mitochondrial genome of U. pinnatifida, focusing on genome organization and phylogenetic relationship between different brown algae lineages. The size of U. pinnatifida mitochondrial DNA is 37,402 bp, including 3 rRNAs, 25 tRNAs, 35 proteins, as well as 3 ORFs. No intron is found and most genes are encoded on the H-strand. The phylogenetic trees (BI) constructed on 35 protein-coding genes from 17 species proved that Saccharina has a closer relationship with Laminaria than that with Undaria. The results supported the conclusion that Alariaceae is sister genus to the Laminariaceae. Above researches will facilitate the understanding of evolutionary relationship within brown algae.
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Affiliation(s)
- Tian-Yong Li
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Jie-Qiong Qu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Yan-Jing Feng
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Cui Liu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Shan Chi
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Tao Liu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
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Qu JQ, Liu C, Wang XM, Zhang ZB, Chi S, Liu T. Complete mitochondrial genome of Costaria costata shows conservative evolution in Laminariales. Mitochondrial DNA 2014; 26:919-20. [PMID: 24409887 DOI: 10.3109/19401736.2013.863290] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Costaria costata, with great commercial and industrial value, typically grows in low intertidal and subtidal retgions in East Asia. The complete mitochondrial genome of C. costata is determined as circular-mapping and AT-rich (65%). The 37,461 bp mitochondrial genome consists of 25 tRNAs, 38 genes (including ORFs) and 3 ribosome genes. The gene arrangement and component are identical to those of Laminaria mitochondrial genomes, which show highly conservative evolution in mitochondrial genomes within the Laminariales. Moreover, the C. costata mitogenome makes full use of nucleotide and genetic information by large amounts of gene overlappings for better adapting the evolution of small genomes.
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Affiliation(s)
- Jie-Qiong Qu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Cui Liu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Xu-Min Wang
- b CAS Key Laboratory of Genome Sciences and Information , Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing , People's Republic of China , and
| | - Zhao-Bao Zhang
- c College of Pharmacy, Shandong University of Traditional Chinese Medicine , Jinan , Shandong , People's Republic of China
| | - Shan Chi
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
| | - Tao Liu
- a College of Marine Life Sciences, Ocean University of China , Qingdao , Shandong , People's Republic of China
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Retuerto M, Li MR, Ignatov A, Croft M, Ramanujachary KV, Chi S, Hodges JP, Dachraoui W, Hadermann J, Tran TT, Halasyamani PS, Grams CP, Hemberger J, Greenblatt M. Polar and magnetic layered A-site and rock salt B-site-ordered NaLnFeWO6 (Ln = La, Nd) perovskites. Inorg Chem 2013; 52:12482-91. [PMID: 24138134 DOI: 10.1021/ic401491y] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have expanded the double perovskite family of materials with the unusual combination of layered order in the A sublattice and rock salt order over the B sublattice to compounds NaLaFeWO6 and NaNdFeWO6. The materials have been synthesized and studied by powder X-ray diffraction, neutron diffraction, electron diffraction, magnetic measurements, X-ray absorption spectroscopy, dielectric measurements, and second harmonic generation. At room temperature, the crystal structures of both compounds can be defined in the noncentrosymmetric monoclinic P2(1) space group resulting from the combination of ordering both in the A and B sublattices, the distortion of the cell due to tilting of the octahedra, and the displacement of certain cations. The magnetic studies show that both compounds are ordered antiferromagnetically below T(N) ≈ 25 K for NaLaFeWO6 and at ∼21 K for NaNdFeWO6. The magnetic structure of NaNdFeWO6 has been solved with a propagation vector k = ((1/2) 0 (1/2)) as an antiferromagnetic arrangement of Fe and Nd moments. Although the samples are potential multiferroics, the dielectric measurements do not show a ferroelectric response.
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Affiliation(s)
- M Retuerto
- Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey , 610 Taylor Road, Piscataway, New Jersey 08854, United States
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Ambady P, Holdhoff M, Ferrigno C, Grossman S, Anderson MD, Liu D, Conrad C, Penas-Prado M, Gilbert MR, Yung AWK, de Groot J, Aoki T, Nishikawa R, Sugiyama K, Nonoguchi N, Kawabata N, Mishima K, Adachi JI, Kurisu K, Yamasaki F, Tominaga T, Kumabe T, Ueki K, Higuchi F, Yamamoto T, Ishikawa E, Takeshima H, Yamashita S, Arita K, Hirano H, Yamada S, Matsutani M, Apok V, Mills S, Soh C, Karabatsou K, Arimappamagan A, Arya S, Majaid M, Somanna S, Santosh V, Schaff L, Armentano F, Harrison C, Lassman A, McKhann G, Iwamoto F, Armstrong T, Yuan Y, Liu D, Acquaye A, Vera-Bolanos E, Diefes K, Heathcock L, Cahill D, Gilbert M, Aldape K, Arrillaga-Romany I, Ruddy K, Greenberg S, Nayak L, Avgeropoulos N, Avgeropoulos G, Riggs G, Reilly C, Banerji N, Bruns P, Hoag M, Gilliland K, Trusheim J, Bekaert L, Borha A, Emery E, Busson A, Guillamo JS, Bell M, Harrison C, Armentano F, Lassman A, Connolly ES, Khandji A, Iwamoto F, Blakeley J, Ye X, Bergner A, Dombi E, Zalewski C, Follmer K, Halpin C, Fayad L, Jacobs M, Baldwin A, Langmead S, Whitcomb T, Jennings D, Widemann B, Plotkin S, Brandes AA, Mason W, Pichler J, Nowak AK, Gil M, Saran F, Revil C, Lutiger B, Carpentier AF, Milojkovic-Kerklaan B, Aftimos P, Altintas S, Jager A, Gladdines W, Lonnqvist F, Soetekouw P, van Linde M, Awada A, Schellens J, Brandsma D, Brenner A, Sun J, Floyd J, Hart C, Eng C, Fichtel L, Gruslova A, Lodi A, Tiziani S, Bridge CA, Baldock A, Kumthekar P, Dilfer P, Johnston SK, Jacobs J, Corwin D, Guyman L, Rockne R, Sonabend A, Cloney M, Canoll P, Swanson KR, Bromberg J, Schouten H, Schaafsma R, Baars J, Brandsma D, Lugtenburg P, van Montfort C, van den Bent M, Doorduijn J, Spalding A, LaRocca R, Haninger D, Saaraswat T, Coombs L, Rai S, Burton E, Burzynski G, Burzynski S, Janicki T, Marszalek A, Burzynski S, Janicki T, Burzynski G, Marszalek A, Cachia D, Smith T, Cardona AF, Mayor LC, Jimenez E, Hakim F, Yepes C, Bermudez S, Useche N, Asencio JL, Mejia JA, Vargas C, Otero JM, Carranza H, Ortiz LD, Cardona AF, Ortiz LD, Jimenez E, Hakim F, Yepes C, Useche N, Bermudez S, Asencio JL, Carranza H, Vargas C, Otero JM, Bartels C, Quintero A, Restrepo CE, Gomez S, Bernal-Vaca L, Lema M, Cardona AF, Ortiz LD, Useche N, Bermudez S, Jimenez E, Hakim F, Yepes C, Mejia JA, Bernal-Vaca L, Restrepo CE, Gomez S, Quintero A, Bartels C, Carranza H, Vargas C, Otero JM, Carlo M, Omuro A, Grommes C, Kris M, Nolan C, Pentsova E, Pietanza M, Kaley T, Carrabba G, Giammattei L, Draghi R, Conte V, Martinelli I, Caroli M, Bertani G, Locatelli M, Rampini P, Artoni A, Carrabba G, Bertani G, Cogiamanian F, Ardolino G, Zarino B, Locatelli M, Caroli M, Rampini P, Chamberlain M, Raizer J, Soffetti R, Ruda R, Brandsma D, Boogerd W, Taillibert S, Le Rhun E, Jaeckle K, van den Bent M, Wen P, Chamberlain M, Chinot OL, Wick W, Mason W, Henriksson R, Saran F, Nishikawa R, Carpentier AF, Hoang-Xuan K, Kavan P, Cernea D, Brandes AA, Hilton M, Kerloeguen Y, Guijarro A, Cloughsey T, Choi JH, Hong YK, Conrad C, Yung WKA, deGroot J, Gilbert M, Loghin M, Penas-Prado M, Tremont I, Silberman S, Picker D, Costa R, Lycette J, Gancher S, Cullen J, Winer E, Hochberg F, Sachs G, Jeyapalan S, Dahiya S, Stevens G, Peereboom D, Ahluwalia M, Daras M, Hsu M, Kaley T, Panageas K, Curry R, Avila E, Fuente MDL, Omuro A, DeAngelis L, Desjardins A, Sampson J, Peters K, Ranjan T, Vlahovic G, Threatt S, Herndon J, Boulton S, Lally-Goss D, McSherry F, Friedman A, Friedman H, Bigner D, Gromeier M, Prust M, Kalpathy-Cramer J, Poloskova P, Jafari-Khouzani K, Gerstner E, Dietrich J, Fabi A, Villani V, Vaccaro V, Vidiri A, Giannarelli D, Piludu F, Anelli V, Carapella C, Cognetti F, Pace A, Flowers A, Flowers A, Killory B, Furuse M, Miyatake SI, Kawabata S, Kuroiwa T, Garciarena P, Anderson MD, Hamilton J, Schellingerhout D, Fuller GN, Sawaya R, Gilbert MR, Gilbert M, Pugh S, Won M, Blumenthal D, Vogelbaum M, Aldape K, Colman H, Chakravarti A, Jeraj R, Dignam J, Armstrong T, Wefel J, Brown P, Jaeckle K, Schiff D, Brachman D, Werner-Wasik M, 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NEURO/MEDICAL ONCOLOGY. Neuro Oncol 2013; 15:iii98-iii135. [PMCID: PMC3823897 DOI: 10.1093/neuonc/not182] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/14/2023] Open
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