701
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Chiu WA, Fischer R, Ndeffo-Mbah ML. State-level needs for social distancing and contact tracing to contain COVID-19 in the United States. Nat Hum Behav 2020; 4:1080-1090. [PMID: 33024280 PMCID: PMC7572893 DOI: 10.1038/s41562-020-00969-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 09/17/2020] [Indexed: 01/07/2023]
Abstract
Starting in mid-May 2020, many US states began relaxing social-distancing measures that were put in place to mitigate the spread of COVID-19. To evaluate the impact of relaxation of restrictions on COVID-19 dynamics and control, we developed a transmission dynamic model and calibrated it to US state-level COVID-19 cases and deaths. We used this model to evaluate the impact of social distancing, testing and contact tracing on the COVID-19 epidemic in each state. As of 22 July 2020, we found that only three states were on track to curtail their epidemic curve. Thirty-nine states and the District of Columbia may have to double their testing and/or tracing rates and/or rolling back reopening by 25%, while eight states require an even greater measure of combined testing, tracing and distancing. Increased testing and contact-tracing capacity is paramount for mitigating the recent large-scale increases in US cases and deaths.
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Affiliation(s)
- Weihsueh A Chiu
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA.
| | - Rebecca Fischer
- Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX, USA
| | - Martial L Ndeffo-Mbah
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA.
- Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX, USA.
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702
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Zhao D, Lin H, Zhang Z. <p>Evidence-Based Framework and Implementation of China’s Strategy in Combating COVID-19</p>. Healthc Policy 2020; 13:1989-1998. [PMID: 33116979 PMCID: PMC7549023 DOI: 10.2147/rmhp.s269573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Accepted: 09/09/2020] [Indexed: 12/28/2022] Open
Abstract
Introduction In less than two months, the COVID-19 outbreak in China was controlled through the stringent strategies of screening and isolation. This article aims to use empirical data from all cases from a prefecture-level city of China to introduce and examine the feasibility and efficiency of the screening and isolation strategies and how these were essential in combatting the COVID-19 outbreak. Methods For this retrospective study, all confirmed COVID-19 patients were recruited from the Taizhou prefecture-level city of Zhejiang province, China. Results Of the city’s total population, 24% were screened for COVID-19 and isolated at home or designated locations for two weeks. From these, a total of 146 confirmed cases of COVID-19 were analysed. Of all cases, 51% were traced from Wuhan, and 21% of patients were in close contact with confirmed cases from outside of the city. Initially, 13% of all patients reported having no clear symptoms, while 42% of patients presented with fever and/or other symptoms. Compared with local patients, new arrivals to the city had fewer days between their exposure and the development of symptoms of COVID-19 (P<0.001), and fewer days from the time they developed symptoms to the confirmation of COVID-19 (P<0.001), respectively. Conclusion This study has fully confirmed that controlling the COVID-19 outbreak through screening and isolation is effective, efficient, and essential. The evidence-based framework and implementation of China’s strategy to combat COVID-19 can explain how China contained the COVID-19 outbreak in a short time period. This study offers important references and implications for containing the COVID-19 pandemic in the global community.
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Affiliation(s)
- Dahai Zhao
- School of International and Public Affairs, Shanghai Jiao Tong University, Shanghai, People’s Republic of China
- Shanghai Jiao Tong University-Yale University Joint Center for Health Policy, Shanghai, People’s Republic of China
- Correspondence: Dahai Zhao School of International and Public Affairs, Shanghai Jiao Tong University, Xinjian Building, No. 1954 Huashan Road, Shanghai200030, People’s Republic of ChinaTel +86-139-1896-8766 Email
| | - Haijiang Lin
- Taizhou City Center for Disease Control and Prevention, Taizhou, Zhejiang Province, People’s Republic of China
| | - Zhiruo Zhang
- School of Public Health, Shanghai Jiao Tong University, Shanghai, People’s Republic of China
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703
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Cooper I, Mondal A, Antonopoulos CG. A SIR model assumption for the spread of COVID-19 in different communities. CHAOS, SOLITONS, AND FRACTALS 2020; 139:110057. [PMID: 32834610 PMCID: PMC7321055 DOI: 10.1016/j.chaos.2020.110057] [Citation(s) in RCA: 240] [Impact Index Per Article: 60.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 06/23/2020] [Indexed: 05/17/2023]
Abstract
In this paper, we study the effectiveness of the modelling approach on the pandemic due to the spreading of the novel COVID-19 disease and develop a susceptible-infected-removed (SIR) model that provides a theoretical framework to investigate its spread within a community. Here, the model is based upon the well-known susceptible-infected-removed (SIR) model with the difference that a total population is not defined or kept constant per se and the number of susceptible individuals does not decline monotonically. To the contrary, as we show herein, it can be increased in surge periods! In particular, we investigate the time evolution of different populations and monitor diverse significant parameters for the spread of the disease in various communities, represented by China, South Korea, India, Australia, USA, Italy and the state of Texas in the USA. The SIR model can provide us with insights and predictions of the spread of the virus in communities that the recorded data alone cannot. Our work shows the importance of modelling the spread of COVID-19 by the SIR model that we propose here, as it can help to assess the impact of the disease by offering valuable predictions. Our analysis takes into account data from January to June, 2020, the period that contains the data before and during the implementation of strict and control measures. We propose predictions on various parameters related to the spread of COVID-19 and on the number of susceptible, infected and removed populations until September 2020. By comparing the recorded data with the data from our modelling approaches, we deduce that the spread of COVID-19 can be under control in all communities considered, if proper restrictions and strong policies are implemented to control the infection rates early from the spread of the disease.
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Affiliation(s)
- Ian Cooper
- School of Physics, The University of Sydney, Sydney, Australia
| | - Argha Mondal
- Department of Mathematical Sciences, University of Essex, Wivenhoe Park, UK
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704
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Ronchi E, Lovreglio R. EXPOSED: An occupant exposure model for confined spaces to retrofit crowd models during a pandemic. SAFETY SCIENCE 2020; 130:104834. [PMID: 32834509 PMCID: PMC7373681 DOI: 10.1016/j.ssci.2020.104834] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 05/11/2020] [Indexed: 05/03/2023]
Abstract
Crowd models can be used for the simulation of people movement in the built environment. Crowd model outputs have been used for evaluating safety and comfort of pedestrians, inform crowd management and perform forensic investigations. Microscopic crowd models allow the representation of each person and the obtainment of information concerning their location over time and interactions with the physical space/other people. Pandemics such as COVID-19 have posed several questions on safe building usage, given the risk of disease transmission among building occupants. Here we show how crowd modelling can be used to assess occupant exposure in confined spaces. The policies adopted concerning building usage and social distancing during a pandemic can vary greatly, and they are mostly based on the macroscopic analysis of the spread of disease rather than a safety assessment performed at a building level. The proposed model allows the investigation of occupant exposure in buildings based on the analysis of microscopic people movement. Risk assessment is performed by retrofitting crowd models with a universal model for exposure assessment which can account for different types of disease transmissions. This work allows policy makers to perform informed decisions concerning building usage during a pandemic.
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Affiliation(s)
- Enrico Ronchi
- Department of Fire Safety Engineering, Lund University, Lund, Sweden
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705
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Cadoni M, Gaeta G. Size and timescale of epidemics in the SIR framework. PHYSICA D. NONLINEAR PHENOMENA 2020; 411:132626. [PMID: 32834247 PMCID: PMC7305940 DOI: 10.1016/j.physd.2020.132626] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Revised: 06/10/2020] [Accepted: 06/14/2020] [Indexed: 05/08/2023]
Abstract
The most important features to assess the severity of an epidemic are its size and its timescale. We discuss these features in a systematic way in the context of SIR and SIR-type models. We investigate in detail how the size and timescale of the epidemic can be changed by acting on the parameters characterizing the model. Using these results and having as guideline the COVID-19 epidemic in Italy, we compare the efficiency of different containment strategies for contrasting an epidemic diffusion such as social distancing, lockdown, tracing, early detection and isolation.
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Affiliation(s)
- Mariano Cadoni
- Dipartimento di Fisica, Università di Cagliari, Cittadella Universitaria, 09042 Monserrato, Italy
- INFN, Sezione di Cagliari, 09042 Monserrato, Italy
| | - Giuseppe Gaeta
- Dipartimento di Matematica, Università degli Studi di Milano, via Saldini 50, 20133 Milano, Italy
- SMRI, 00058 Santa Marinella, Italy
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706
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Taghizadeh L, Karimi A, Heitzinger C. Uncertainty quantification in epidemiological models for the COVID-19 pandemic. Comput Biol Med 2020; 125:104011. [PMID: 33091766 PMCID: PMC7518858 DOI: 10.1016/j.compbiomed.2020.104011] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 09/11/2020] [Accepted: 09/17/2020] [Indexed: 12/16/2022]
Abstract
Mathematical modeling of epidemiological diseases using differential equations are of great importance in order to recognize the characteristics of the diseases and their outbreak. The procedure of modeling consists of two essential components: the first component is to solve the mathematical model numerically, the so-called forward modeling. The second component is to identify the unknown parameter values in the model, which is known as inverse modeling and leads to identifying the epidemiological model more precisely. The main goal of this paper is to develop the forward and inverse modeling of the coronavirus (COVID-19) pandemic using novel computational methodologies in order to accurately estimate and predict the pandemic. This leads to governmental decisions support in implementing effective protective measures and prevention of new outbreaks. To this end, we use the logistic equation and the SIR (susceptible-infected-removed) system of ordinary differential equations to model the spread of the COVID-19 pandemic. For the inverse modeling, we propose Bayesian inversion techniques, which are robust and reliable approaches, in order to estimate the unknown parameters of the epidemiological models. We deploy an adaptive Markov-chain Monte-Carlo (MCMC) algorithm for the estimation of a posteriori probability distribution and confidence intervals for the unknown model parameters as well as for the reproduction number. We perform our analyses on the publicly available data for Austria to estimate the main epidemiological model parameters and to study the effectiveness of the protective measures by the Austrian government. The estimated parameters and the analysis of fatalities provide useful information for decision-makers and makes it possible to perform more realistic forecasts of future outbreaks. According to our Bayesian analysis for the logistic model, the growth rate and the carrying capacity are estimated respectively as 0.28 and 14974. Moreover for the parameters of the SIR model, namely the transmission rate and recovery rate, we estimate 0.36 and 0.06, respectively. Additionally, we obtained an average infectious period of 17 days and a transmission period of 3 days for COVID-19 in Austria. We also estimate the reproduction number over time for Austria. This quantity is estimated around 3 on March 26, when the first recovery was reported. Then it decays to 1 at the beginning of April. Furthermore, we present a fatality analysis for COVID-19 in Austria, which is also of importance for governmental protective decision-making. According to our analysis, the case fatality rate (CFR) is estimated as 4% and a prediction of the number of fatalities for the coming 10 days is also presented. Additionally, the ICU bed usage in Austria indicates that around 2% of the active infected individuals are critical cases and require ICU beds. Therefore, if Austrian governmental protective measures would not have taken place and for instance if the number of active infected cases would have been around five times larger, the ICU bed capacity could have been exceeded.
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Affiliation(s)
- Leila Taghizadeh
- Institute of Analysis and Scientific Computing, TU Wien, Wiedner Hauptstraße 8–10, 1040, Vienna, Austria,Corresponding author
| | - Ahmad Karimi
- Institute of Analysis and Scientific Computing, TU Wien, Wiedner Hauptstraße 8–10, 1040, Vienna, Austria
| | - Clemens Heitzinger
- Institute of Analysis and Scientific Computing, TU Wien, Wiedner Hauptstraße 8–10, 1040, Vienna, Austria,School of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ, 85287, USA
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707
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Kotwal A, Yadav AK, Yadav J, Kotwal J, Khune S. Predictive models of COVID-19 in India: A rapid review. Med J Armed Forces India 2020; 76:377-386. [PMID: 32836710 PMCID: PMC7298493 DOI: 10.1016/j.mjafi.2020.06.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Accepted: 06/02/2020] [Indexed: 01/01/2023] Open
Abstract
BACKGROUND The mathematical modelling of coronavirus disease-19 (COVID-19) pandemic has been attempted by a wide range of researchers from the very beginning of cases in India. Initial analysis of available models revealed large variations in scope, assumptions, predictions, course, effect of interventions, effect on health-care services, and so on. Thus, a rapid review was conducted for narrative synthesis and to assess correlation between predicted and actual values of cases in India. METHODS A comprehensive, two-step search strategy was adopted, wherein the databases such as Medline, google scholar, MedRxiv, and BioRxiv were searched. Later, hand searching for the articles and contacting known modelers for unpublished models was resorted. The data from the included studies were extracted by the two investigators independently and checked by third researcher. RESULTS Based on the literature search, 30 articles were included in this review. As narrative synthesis, data from the studies were summarized in terms of assumptions, model used, predictions, main recommendations, and findings. The Pearson's correlation coefficient (r) between predicted and actual values (n = 20) was 0.7 (p = 0.002) with R2 = 0.49. For Susceptible, Infected, Recovered (SIR) and its variant models (n = 16) 'r' was 0.65 (p = 0.02). The correlation for long-term predictions could not be assessed due to paucity of information. CONCLUSION Review has shown the importance of assumptions and strong correlation between short-term projections but uncertainties for long-term predictions. Thus, short-term predictions may be revised as more and more data become available. The assumptions too need to expand and firm up as the pandemic evolves.
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Affiliation(s)
- Atul Kotwal
- MG (Med), South Western Command, C/o 56 APO, India
| | - Arun Kumar Yadav
- Associate Professor, Department of Community Medicine, Armed Forces Medical College, Pune, India
| | - Jyoti Yadav
- Independent Researcher, 1006, Sandalwood Building, Green Valley, Wanowarie, Pune, India
| | - Jyoti Kotwal
- Professor, (Pathology), Sir Ganga Ram Hospital, New Delhi, India
| | - Sudhir Khune
- Resident, Department of Community Medicine, Armed Forces Medical College, Pune, India
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708
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Cooper I, Mondal A, Antonopoulos CG. Dynamic tracking with model-based forecasting for the spread of the COVID-19 pandemic. CHAOS, SOLITONS, AND FRACTALS 2020; 139:110298. [PMID: 32982084 PMCID: PMC7500945 DOI: 10.1016/j.chaos.2020.110298] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/07/2020] [Accepted: 09/12/2020] [Indexed: 05/05/2023]
Abstract
In this paper, a susceptible-infected-removed (SIR) model has been used to track the evolution of the spread of COVID-19 in four countries of interest. In particular, the epidemic model, that depends on some basic characteristics, has been applied to model the evolution of the disease in Italy, India, South Korea and Iran. The economic, social and health consequences of the spread of the virus have been cataclysmic. Hence, it is imperative that mathematical models can be developed and used to compare published datasets with model predictions. The predictions estimated from the presented methodology can be used in both the qualitative and quantitative analysis of the spread. They give an insight into the spread of the virus that the published data alone cannot, by updating them and the model on a daily basis. We show that by doing so, it is possible to detect the early onset of secondary spikes in infections or the development of secondary waves. We considered data from March to August, 2020, when different communities were affected severely and demonstrate predictions depending on the model's parameters related to the spread of COVID-19 until the end of December, 2020. By comparing the published data with model results, we conclude that in this way, it may be possible to reflect better the success or failure of the adequate measures implemented by governments and authorities to mitigate and control the current pandemic.
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Affiliation(s)
- Ian Cooper
- School of Physics, The University of Sydney, Sydney, Australia
| | - Argha Mondal
- Department of Mathematical Sciences, University of Essex, Wivenhoe Park, UK
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709
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Buonomo B, Della Marca R. Effects of information-induced behavioural changes during the COVID-19 lockdowns: the case of Italy. ROYAL SOCIETY OPEN SCIENCE 2020; 7:201635. [PMID: 33204488 PMCID: PMC7657925 DOI: 10.1098/rsos.201635] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 09/18/2020] [Indexed: 05/03/2023]
Abstract
The COVID-19 pandemic that started in China in December 2019 has not only threatened world public health, but severely impacted almost every facet of life, including behavioural and psychological aspects. In this paper, we focus on the 'human element' and propose a mathematical model to investigate the effects on the COVID-19 epidemic of social behavioural changes in response to lockdowns. We consider an SEIR-like epidemic model where the contact and quarantine rates depend on the available information and rumours about the disease status in the community. The model is applied to the case of the COVID-19 epidemic in Italy. We consider the period that stretches between 24 February 2020, when the first bulletin by the Italian Civil Protection was reported and 18 May 2020, when the lockdown restrictions were mostly removed. The role played by the information-related parameters is determined by evaluating how they affect suitable outbreak-severity indicators. We estimate that citizen compliance with mitigation measures played a decisive role in curbing the epidemic curve by preventing a duplication of deaths and about 46% more infections.
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Affiliation(s)
- Bruno Buonomo
- Department of Mathematics and Applications, University of Naples Federico II, via Cintia, 80126 Naples, Italy
| | - Rossella Della Marca
- Department of Mathematical, Physical and Computer Sciences, University of Parma, Parco Area delle Scienze 53/A, 43124 Parma, Italy
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710
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Giani P, Castruccio S, Anav A, Howard D, Hu W, Crippa P. Short-term and long-term health impacts of air pollution reductions from COVID-19 lockdowns in China and Europe: a modelling study. Lancet Planet Health 2020; 4:e474-e482. [PMID: 32976757 PMCID: PMC7508534 DOI: 10.1016/s2542-5196(20)30224-2] [Citation(s) in RCA: 98] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 08/25/2020] [Accepted: 08/26/2020] [Indexed: 05/19/2023]
Abstract
BACKGROUND Exposure to poor air quality leads to increased premature mortality from cardiovascular and respiratory diseases. Among the far-reaching implications of the ongoing COVID-19 pandemic, a substantial improvement in air quality was observed worldwide after the lockdowns imposed by many countries. We aimed to assess the implications of different lockdown measures on air pollution levels in Europe and China, as well as the short-term and long-term health impact. METHODS For this modelling study, observations of fine particulate matter (PM2·5) concentrations from more than 2500 stations in Europe and China during 2016-20 were integrated with chemical transport model simulations to reconstruct PM2·5 fields at high spatiotemporal resolution. The health benefits, expressed as short-term and long-term avoided mortality from PM2·5 exposure associated with the interventions imposed to control the COVID-19 pandemic, were quantified on the basis of the latest epidemiological studies. To explore the long-term variability in air quality and associated premature mortality, we built different scenarios of economic recovery (immediate or gradual resumption of activities, a second outbreak in autumn, and permanent lockdown for the whole of 2020). FINDINGS The lockdown interventions led to a reduction in population-weighted PM2·5 of 14·5 μg m-3 across China (-29·7%) and 2·2 μg m-3 across Europe (-17·1%), with unprecedented reductions of 40 μg m-3 in bimonthly mean PM2·5 in the areas most affected by COVID-19 in China. In the short term, an estimated 24 200 (95% CI 22 380-26 010) premature deaths were averted throughout China between Feb 1 and March 31, and an estimated 2190 (1960-2420) deaths were averted in Europe between Feb 21 and May 17. We also estimated a positive number of long-term avoided premature fatalities due to reduced PM2·5 concentrations, ranging from 76 400 (95% CI 62 600-86 900) to 287 000 (233 700-328 300) for China, and from 13 600 (11 900-15 300) to 29 500 (25 800-33 300) for Europe, depending on the future scenarios of economic recovery adopted. INTERPRETATION These results indicate that lockdown interventions led to substantial reductions in PM2·5 concentrations in China and Europe. We estimated that tens of thousands of premature deaths from air pollution were avoided, although with significant differences observed in Europe and China. Our findings suggest that considerable improvements in air quality are achievable in both China and Europe when stringent emission control policies are adopted. FUNDING None.
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Affiliation(s)
- Paolo Giani
- Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, Notre Dame, IN, USA
| | - Stefano Castruccio
- Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN, USA
| | - Alessandro Anav
- Climate Modeling Laboratory, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Centro Ricerche Casaccia, Rome, Italy
| | - Don Howard
- Department of Philosophy, University of Notre Dame, Notre Dame, IN, USA
| | - Wenjing Hu
- Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN, USA
| | - Paola Crippa
- Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, Notre Dame, IN, USA.
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711
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Zhou T, Ji Y. Semiparametric Bayesian inference for the transmission dynamics of COVID-19 with a state-space model. Contemp Clin Trials 2020; 97:106146. [PMID: 32947047 PMCID: PMC7491370 DOI: 10.1016/j.cct.2020.106146] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/03/2020] [Accepted: 09/07/2020] [Indexed: 01/12/2023]
Abstract
The outbreak of Coronavirus Disease 2019 (COVID-19) is an ongoing pandemic affecting over 200 countries and regions. Inference about the transmission dynamics of COVID-19 can provide important insights into the speed of disease spread and the effects of mitigation policies. We develop a novel Bayesian approach to such inference based on a probabilistic compartmental model using data of daily confirmed COVID-19 cases. In particular, we consider a probabilistic extension of the classical susceptible-infectious-recovered model, which takes into account undocumented infections and allows the epidemiological parameters to vary over time. We estimate the disease transmission rate via a Gaussian process prior, which captures nonlinear changes over time without the need of specific parametric assumptions. We utilize a parallel-tempering Markov chain Monte Carlo algorithm to efficiently sample from the highly correlated posterior space. Predictions for future observations are done by sampling from their posterior predictive distributions. Performance of the proposed approach is assessed using simulated datasets. Finally, our approach is applied to COVID-19 data from six states of the United States: Washington, New York, California, Florida, Texas, and Illinois. An R package BaySIR is made available at https://github.com/tianjianzhou/BaySIR for the public to conduct independent analysis or reproduce the results in this paper.
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Affiliation(s)
- Tianjian Zhou
- Department of Statistics, Colorado State University, 851 Oval Dr, Fort Collins, CO 80523-1877, USA.
| | - Yuan Ji
- Department of Public Health Sciences, University of Chicago, Chicago, IL, USA
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712
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Jawad AJ. Effectiveness of population density as natural social distancing in COVID19 spreading. ETHICS, MEDICINE, AND PUBLIC HEALTH 2020; 15:100556. [PMID: 32844108 PMCID: PMC7440090 DOI: 10.1016/j.jemep.2020.100556] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 06/11/2020] [Indexed: 11/30/2022]
Abstract
Recently, many countries have decided to reopen gradually and some of them have thought that social distancing has not had a significant effect. In our study, a new view of the importance of social distancing to prevent the spread of coronavirus has been presented in terms of the relationship between peak day and peak period and population density of nine countries. Data for nine different countries in different coronavirus situations have been analyzed. The analysis process was applied by using three programs, namely; WebPlotDigitizer, WSxM and Origin. The results provide evidence of the effectiveness of social distancing by calculation of the effect of population density on coronavirus infection. That was applied by two stages, the first one by determination of two different groups of countries depending on the rate and range of coronavirus spread. These two groups were countries with developed and developing COVID19 which lead to calculate the peak day and the period times of developed groups. Then, analysis of that data with population density was evaluated to indicate there are significant effects of population density on peak day and peak period times which explain the importance of social distancing between people to manage and control that. The results showed that there are increasing in peak day and peak period times with increasing the population density.
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Affiliation(s)
- A J Jawad
- Queen Mary University of London, School of Engineering and Materials Science, London, UK
- University of Babylon, College of Materials Engineering, Department of Polymers and Petrochemicals Industrial, Al Hillah, Iraq
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713
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Garcia LP, Traebert J, Boing AC, Santos GFZ, Pedebôs LA, d'Orsi E, Prado PI, Veras MADSM, Boava G, Boing AF. The potential spread of Covid-19 and government decision-making: a retrospective analysis in Florianópolis, Brazil. REVISTA BRASILEIRA DE EPIDEMIOLOGIA 2020; 23:e200091. [PMID: 33027433 DOI: 10.1590/1980-549720200091] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 08/04/2020] [Indexed: 11/21/2022] Open
Abstract
OBJECTIVE To analyze the association between the transmission potential of SARS-CoV-2 and the decisions made by the municipal government of Florianópolis (Brazil) regarding social distancing. METHODS We analyzed new cases of COVID-19 identified in Florianópolis residents between February 1 and July 14, 2020, using a nowcasting approach. Decrees related to COVID-19 published in the Official Gazette of the Municipality between February 1 and July 14, 2020 were also analyzed. Based on the actions proposed in the decrees, whether they loosened social distancing measures, or increased or maintained existing restrictions, was analyzed, thus creating a Social Distancing Index. Time-dependent reproduction numbers (Rt) for a period of 14 days prior to each decree were calculated. A matrix was constructed associating the classification of each decree and the Rt values, analyzing the consonance or dissonance between the potential dissemination of SARS-CoV-2 and the actions of the decrees. RESULTS A total of 5,374 cases of COVID-19 and 26 decrees were analyzed. Nine decrees increased social distancing measures, nine maintained them, and eight loosened them. Of the 26 actions, 9 were consonant and 17 dissonant with the tendency indicated by the Rt. Dissonance was observed in all of the decrees that maintained the distance measures or loosened them. The fastest expansion in the number of new cases and the greatest amount of dissonant decrees was found in the last two months analyzed. CONCLUSION There was an important divergence between municipal measures of social distancing with epidemiological indicators at the time of each political decision.
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Affiliation(s)
- Leandro Pereira Garcia
- Gerência de Inteligência e Informação, Secretaria Municipal de Saúde de Florianópolis - Florianópolis (SC), Brasil
| | - Jefferson Traebert
- Programa de Pós-Graduação em Ciências da Saúde, Universidade do Sul de Santa Catarina - Florianópolis (SC), Brasil
| | - Alexandra Crispim Boing
- Programa de Pós-Graduação em Saúde Coletiva, Universidade Federal de Santa Catarina - Florianópolis (SC), Brasil.,Observatório COVID-19 Brasil - São Paulo (SP), Brasil
| | - Grazielli Faria Zimmer Santos
- Grupo de Pesquisa em Coprodução do Bem Público: Accountability e Gestão, Universidade do Estado de Santa Catarina - Florianópolis (SC), Brasil
| | - Lucas Alexandre Pedebôs
- Gerência de Inteligência e Informação, Secretaria Municipal de Saúde de Florianópolis - Florianópolis (SC), Brasil
| | - Eleonora d'Orsi
- Programa de Pós-Graduação em Saúde Coletiva, Universidade Federal de Santa Catarina - Florianópolis (SC), Brasil
| | - Paulo Inacio Prado
- Observatório COVID-19 Brasil - São Paulo (SP), Brasil.,Instituto de Biologia, Universidade de São Paulo - São Paulo (SP), Brasil
| | | | - Giuliano Boava
- Departamento de Matemática, Universidade Federal de Santa Catarina - Florianópolis (SC), Brasil
| | - Antonio Fernando Boing
- Programa de Pós-Graduação em Saúde Coletiva, Universidade Federal de Santa Catarina - Florianópolis (SC), Brasil.,Observatório COVID-19 Brasil - São Paulo (SP), Brasil
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714
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Trigilio AD, Marien YW, Van Steenberge PHM, D’hooge DR. Gillespie-Driven kinetic Monte Carlo Algorithms to Model Events for Bulk or Solution (Bio)Chemical Systems Containing Elemental and Distributed Species. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c03888] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alessandro D. Trigilio
- Laboratory for Chemical Technology, Ghent University, Technologiepark 125, 9052 Gent, Belgium
| | - Yoshi W. Marien
- Laboratory for Chemical Technology, Ghent University, Technologiepark 125, 9052 Gent, Belgium
| | | | - Dagmar R. D’hooge
- Laboratory for Chemical Technology, Ghent University, Technologiepark 125, 9052 Gent, Belgium
- Centre for Textile Science and Engineering, Ghent University, Technologiepark 70a, 9052 Gent, Belgium
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715
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Radha M, Balamuralitharan S. A study on COVID-19 transmission dynamics: stability analysis of SEIR model with Hopf bifurcation for effect of time delay. ADVANCES IN DIFFERENCE EQUATIONS 2020; 2020:523. [PMID: 32989381 PMCID: PMC7513461 DOI: 10.1186/s13662-020-02958-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 09/09/2020] [Indexed: 05/03/2023]
Abstract
This paper deals with a general SEIR model for the coronavirus disease 2019 (COVID-19) with the effect of time delay proposed. We get the stability theorems for the disease-free equilibrium and provide adequate situations of the COVID-19 transmission dynamics equilibrium of present and absent cases. A Hopf bifurcation parameter τ concerns the effects of time delay and we demonstrate that the locally asymptotic stability holds for the present equilibrium. The reproduction number is brief in less than or greater than one, and it effectively is controlling the COVID-19 infection outbreak and subsequently reveals insight into understanding the patterns of the flare-up. We have included eight parameters and the least square method allows us to estimate the initial values for the Indian COVID-19 pandemic from real-life data. It is one of India's current pandemic models that have been studied for the time being. This Covid19 SEIR model can apply with or without delay to all country's current pandemic region, after estimating parameter values from their data. The sensitivity of seven parameters has also been explored. The paper also examines the impact of immune response time delay and the importance of determining essential parameters such as the transmission rate using sensitivity indices analysis. The numerical experiment is calculated to illustrate the theoretical results.
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Affiliation(s)
- M. Radha
- Department of Mathematics, College of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, 603203 Kanchipuram, Chennai TN India
| | - S. Balamuralitharan
- Department of Mathematics, College of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Kattankulathur, 603203 Kanchipuram, Chennai TN India
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716
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Oehmke JF, Oehmke TB, Singh LN, Post LA. Dynamic Panel Estimate-Based Health Surveillance of SARS-CoV-2 Infection Rates to Inform Public Health Policy: Model Development and Validation. J Med Internet Res 2020; 22:e20924. [PMID: 32915762 PMCID: PMC7511227 DOI: 10.2196/20924] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/19/2020] [Accepted: 09/09/2020] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND SARS-CoV-2, the novel coronavirus that causes COVID-19, is a global pandemic with higher mortality and morbidity than any other virus in the last 100 years. Without public health surveillance, policy makers cannot know where and how the disease is accelerating, decelerating, and shifting. Unfortunately, existing models of COVID-19 contagion rely on parameters such as the basic reproduction number and use static statistical methods that do not capture all the relevant dynamics needed for surveillance. Existing surveillance methods use data that are subject to significant measurement error and other contaminants. OBJECTIVE The aim of this study is to provide a proof of concept of the creation of surveillance metrics that correct for measurement error and data contamination to determine when it is safe to ease pandemic restrictions. We applied state-of-the-art statistical modeling to existing internet data to derive the best available estimates of the state-level dynamics of COVID-19 infection in the United States. METHODS Dynamic panel data (DPD) models were estimated with the Arellano-Bond estimator using the generalized method of moments. This statistical technique enables control of various deficiencies in a data set. The validity of the model and statistical technique was tested. RESULTS A Wald chi-square test of the explanatory power of the statistical approach indicated that it is valid (χ210=1489.84, P<.001), and a Sargan chi-square test indicated that the model identification is valid (χ2946=935.52, P=.59). The 7-day persistence rate for the week of June 27 to July 3 was 0.5188 (P<.001), meaning that every 10,000 new cases in the prior week were associated with 5188 cases 7 days later. For the week of July 4 to 10, the 7-day persistence rate increased by 0.2691 (P=.003), indicating that every 10,000 new cases in the prior week were associated with 7879 new cases 7 days later. Applied to the reported number of cases, these results indicate an increase of almost 100 additional new cases per day per state for the week of July 4-10. This signifies an increase in the reproduction parameter in the contagion models and corroborates the hypothesis that economic reopening without applying best public health practices is associated with a resurgence of the pandemic. CONCLUSIONS DPD models successfully correct for measurement error and data contamination and are useful to derive surveillance metrics. The opening of America involves two certainties: the country will be COVID-19-free only when there is an effective vaccine, and the "social" end of the pandemic will occur before the "medical" end. Therefore, improved surveillance metrics are needed to inform leaders of how to open sections of the United States more safely. DPD models can inform this reopening in combination with the extraction of COVID-19 data from existing websites.
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Affiliation(s)
- James Francis Oehmke
- Department of Emergency Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States
| | - Theresa B Oehmke
- Department of Civil Engineering, University of California at Berkeley, Berkeley, CA, United States
| | - Lauren Nadya Singh
- Department of Emergency Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States
| | - Lori Ann Post
- Department of Emergency Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States
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717
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Traoré A, Konané FV. Modeling the effects of contact tracing on COVID-19 transmission. ADVANCES IN DIFFERENCE EQUATIONS 2020; 2020:509. [PMID: 32983238 PMCID: PMC7503445 DOI: 10.1186/s13662-020-02972-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 09/13/2020] [Indexed: 06/11/2023]
Abstract
In this paper, a mathematical model for COVID-19 that involves contact tracing is studied. The contact tracing-induced reproduction number R q and equilibrium for the model are determined and stabilities are examined. The global stabilities results are achieved by constructing Lyapunov functions. The contact tracing-induced reproduction number R q is compared with the basic reproduction number R 0 for the model in the absence of any intervention to assess the possible benefits of the contact tracing strategy.
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Affiliation(s)
- Ali Traoré
- Laboratoire de Mathématiques et Informatique (LAMI), Département de Mathématiques, Université Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03 Ouagadougou, Burkina Faso
| | - Fourtoua Victorien Konané
- Laboratoire de Mathématiques et Informatique (LAMI), Département de Mathématiques, Université Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03 Ouagadougou, Burkina Faso
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718
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Zimba R, Kulkarni S, Berry A, You W, Mirzayi C, Westmoreland D, Parcesepe A, Waldron L, Rane M, Kochhar S, Robertson M, Maroko AR, Grov C, Nash D. Testing, Testing: What SARS-CoV-2 testing services do adults in the United States actually want? MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2020:2020.09.15.20195180. [PMID: 32995800 PMCID: PMC7523137 DOI: 10.1101/2020.09.15.20195180] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Importance: Ascertaining preferences for SARS-CoV-2 testing and incorporating findings into the design and implementation of strategies for delivering testing services may enhance testing uptake and engagement, a prerequisite to reducing onward transmission. Objective: To determine important drivers of decisions to obtain a SARS-CoV-2 test in the context of increasing community transmission. Design : A discrete choice experiment (DCE) was used to assess the relative importance of type of SARS-CoV-2 test, specimen type, testing venue, and results turnaround time. Uptake of an optimized testing scenario was simulated relative to the current typical testing scenario of polymerase chain reaction (PCR) via nasopharyngeal (NP) swab in a provider office or urgent care clinic with results in >5 days. Setting: Online survey, embedded in an existing cohort study, conducted during July 30 - September 8, 2020. Participants: Participants (n=4,793) were enrolled in the CHASING COVID Cohort Study, a national longitudinal cohort of adults >18 years residing in the 50 US states, Washington, DC, Puerto Rico, or Guam. Main Outcome(s) and Measure(s): Relative importance of SARS-CoV-2 testing method attributes, utilities of specific attribute levels, and probability of choosing a testing scenario based on preferences estimated from the DCE, the current typical testing option, or choosing not to test. Results: Turnaround time for test results had the highest relative importance (30.4%), followed by test type (28.3%), specimen type (26.2%), and venue (15.0%). Participants preferred fast results on both past and current infection and using a noninvasive specimen, preferably collected at home. Simulations suggested that providing immediate or same day test results, providing both PCR and serology, or collecting oral specimens would substantially increase testing uptake over the current typical testing option. Simulated uptake of a hypothetical testing scenario of PCR and serology via a saliva sample at a pharmacy with same day results was 97.7%, compared to 0.6% for the current typical testing scenario, with 1.8% opting for no test. Conclusions and Relevance: Testing strategies that offer both PCR and serology with non-invasive methods and rapid turnaround time would likely have the most uptake and engagement among residents in communities with increasing community transmission of SARS-CoV-2.
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Affiliation(s)
- Rebecca Zimba
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Sarah Kulkarni
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Amanda Berry
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - William You
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Chloe Mirzayi
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Drew Westmoreland
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Angela Parcesepe
- Department of Maternal and Child Health, Gillings School of Public Health, University of North Carolina, Chapel Hill, NC, USA
- Carolina Population Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Levi Waldron
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
- Department of Epidemiology and Biostatistics, Graduate School of Public Health and Health Policy, City University of New York (CUNY); New York City, New York USA
| | - Madhura Rane
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Shivani Kochhar
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - McKaylee Robertson
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
| | - Andrew R Maroko
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
- Department of Environmental, Occupational, and Geospatial Health Sciences, Graduate School of Public Health and Health Policy, City University of New York (CUNY); New York City, New York USA
| | - Christian Grov
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
- Department of Community Health and Social Sciences, Graduate School of Public Health and Health Policy, City University of New York (CUNY); New York City, New York USA
| | - Denis Nash
- Institute for Implementation Science in Population Health (ISPH), City University of New York (CUNY); New York City, New York USA
- Department of Epidemiology and Biostatistics, Graduate School of Public Health and Health Policy, City University of New York (CUNY); New York City, New York USA
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719
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Pacheco-Barrios K, Cardenas-Rojas A, Giannoni-Luza S, Fregni F. COVID-19 pandemic and Farr's law: A global comparison and prediction of outbreak acceleration and deceleration rates. PLoS One 2020; 15:e0239175. [PMID: 32941485 PMCID: PMC7498003 DOI: 10.1371/journal.pone.0239175] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Accepted: 08/16/2020] [Indexed: 11/18/2022] Open
Abstract
The COVID-19 outbreak has forced most of the global population to lock-down and has put in check the health services all over the world. Current predictive models are complex, region-dependent, and might not be generalized to other countries. However, a 150-year old epidemics law promulgated by William Farr might be useful as a simple arithmetical model (percent increase [R1] and acceleration [R2] of new cases and deaths) to provide a first sight of the epidemic behavior and to detect regions with high predicted dynamics. Thus, this study tested Farr's Law assumptions by modeling COVID-19 data of new cases and deaths. COVID-19 data until April 10, 2020, was extracted from available countries, including income, urban index, and population characteristics. Farr's law first (R1) and second ratio (R2) were calculated. We constructed epidemic curves and predictive models for the available countries and performed ecological correlation analysis between R1 and R2 with demographic data. We extracted data from 210 countries, and it was possible to estimate the ratios of 170 of them. Around 42·94% of the countries were in an initial acceleration phase, while 23·5% already crossed the peak. We predicted a reduction close to zero with wide confidence intervals for 56 countries until June 10 (high-income countries from Asia and Oceania, with strict political actions). There was a significant association between high R1 of deaths and high urban index. Farr's law seems to be a useful model to give an overview of COVID-19 pandemic dynamics. The countries with high dynamics are from Africa and Latin America. Thus, this is a call to urgently prioritize actions in those countries to intensify surveillance, to re-allocate resources, and to build healthcare capacities based on multi-nation collaboration to limit onward transmission and to reduce the future impact on these regions in an eventual second wave.
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Affiliation(s)
- Kevin Pacheco-Barrios
- Spaulding Research Institute, Spaulding Rehabilitation Hospital and Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Unidad de Investigación para la Generación y Síntesis de Evidencias en Salud, Universidad San Ignacio de Loyola, Lima, Peru
| | - Alejandra Cardenas-Rojas
- Spaulding Research Institute, Spaulding Rehabilitation Hospital and Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Stefano Giannoni-Luza
- Spaulding Research Institute, Spaulding Rehabilitation Hospital and Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Felipe Fregni
- Spaulding Research Institute, Spaulding Rehabilitation Hospital and Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America
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720
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Chiu WA, Fischer R, Ndeffo-Mbah ML. State-level needs for social distancing and contact tracing to contain COVID-19 in the United States. RESEARCH SQUARE 2020:rs.3.rs-40364. [PMID: 32702727 PMCID: PMC7362894 DOI: 10.21203/rs.3.rs-40364/v1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Starting in mid-May 2020, many US states began relaxing social distancing measures that were put in place to mitigate the spread of COVID-19. To evaluate the impact of relaxation of restrictions on COVID-19 dynamics and control, we developed a transmission dynamic model and calibrated it to US state-level COVID-19 cases and deaths. We used this model to evaluate the impact of social distancing, testing and contact tracing on the COVID-19 epidemic in each state. As of July 22, 2020, we found only three states were on track to curtail their epidemic curve. Thirty-nine states and the District of Columbia may have to double their testing and/or tracing rates and/or rolling back reopening by 25%, while eight states require an even greater measure of combined testing, tracing, and distancing. Increased testing and contact tracing capacity is paramount for mitigating the recent large-scale increases in U.S. cases and deaths.
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Affiliation(s)
- Weihsueh A. Chiu
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77845,Corresponding authors: Martial L. Ndeffo-Mbah (); Weihsueh A. Chiu ()
| | - Rebecca Fischer
- Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX 77845
| | - Martial L. Ndeffo-Mbah
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77845,Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX 77845,Corresponding authors: Martial L. Ndeffo-Mbah (); Weihsueh A. Chiu ()
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721
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Chiu WA, Fischer R, Ndeffo-Mbah ML. State-level needs for social distancing and contact tracing to contain COVID-19 in the United States . RESEARCH SQUARE 2020:rs.3.rs-40364. [PMID: 36575758 PMCID: PMC9793832 DOI: 10.21203/rs.3.rs-40364/v2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Starting in mid-May 2020, many US states began relaxing social distancing measures that were put in place to mitigate the spread of COVID-19. To evaluate the impact of relaxation of restrictions on COVID-19 dynamics and control, we developed a transmission dynamic model and calibrated it to US state-level COVID-19 cases and deaths. We used this model to evaluate the impact of social distancing, testing and contact tracing on the COVID-19 epidemic in each state. As of July 22, 2020, we found only three states were on track to curtail their epidemic curve. Thirty-nine states and the District of Columbia may have to double their testing and/or tracing rates and/or rolling back reopening by 25%, while eight states require an even greater measure of combined testing, tracing, and distancing. Increased testing and contact tracing capacity is paramount for mitigating the recent large-scale increases in U.S. cases and deaths.
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Affiliation(s)
- Weihsueh A. Chiu
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77845,Corresponding authors: Martial L. Ndeffo-Mbah (); Weihsueh A. Chiu ()
| | - Rebecca Fischer
- Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX 77845
| | - Martial L. Ndeffo-Mbah
- Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77845,Department of Epidemiology and Biostatistics, School of Public Health, Texas A&M University, College Station, TX 77845,Corresponding authors: Martial L. Ndeffo-Mbah (); Weihsueh A. Chiu ()
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722
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Simons T, MacGlashan A, Goldsmith C, Wodeyar H, Abraham KA. Initial impact of COVID-19 on dialysis provision; review of international guidelines and adaptation of a hub unit's service. Semin Dial 2020; 34:123-129. [PMID: 32964528 DOI: 10.1111/sdi.12913] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 07/17/2020] [Accepted: 08/09/2020] [Indexed: 01/08/2023]
Abstract
The COVID-19 pandemic has put a strain on many aspects of health care including the provision of dialysis. Two categories of patients have had the greatest impact on dialysis capacity. Those with COVID-19-related acute kidney injury and those chronic dialysis patients who required isolation or cohort dialysis because of the pandemic. Limited information on incidence hampers capacity planning and the rapid change in demand provides further challenges. In the 4 weeks after our first patient, the incidence of confirmed infection in our dialysis population has been 5.1%. By the third week, hemodialysis had to be provided in critical care as the in-house capacity for hemofiltration had been overwhelmed. The interventions that enabled these needs to be met are detailed in this paper alongside a review of international recommendations and how they have been adapted to meet local pressures.
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Affiliation(s)
- Terry Simons
- Dialysis Units Matron, Liverpool University Hospitals NHS FT, Liverpool, UK
| | - Andrew MacGlashan
- Home Therapies Lead Nurse, Liverpool University Hospitals NHS FT, Liverpool, UK
| | | | - Harsha Wodeyar
- Consultant Nephrologist, Liverpool University Hospitals NHS FT, Liverpool, UK
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723
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Musso N, Costantino A, La Spina S, Finocchiaro A, Andronico F, Stracquadanio S, Liotta L, Visalli R, Emmanuele G. New SARS-CoV-2 Infection Detected in an Italian Pet Cat by RT-qPCR from Deep Pharyngeal Swab. Pathogens 2020; 9:E746. [PMID: 32932800 PMCID: PMC7559392 DOI: 10.3390/pathogens9090746] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 08/25/2020] [Accepted: 09/09/2020] [Indexed: 01/08/2023] Open
Abstract
The pandemic respiratory disease COVID-19, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emerged in Wuhan in December 2019 and then spread throughout the world; Italy was the most affected European country. Despite close pet-human contact, little is known about the predisposition of pets to SARS-CoV-2. Among these, felines are the most susceptible. In this study, a domestic cat with clear clinical signs of pneumonia, confirmed by Rx imaging, was found to be infected by SARS-CoV-2 using quantitative RT-qPCR from a nasal swab. This is the first Italian study responding to the request of the scientific community to focus attention on the possible role of pets as a viral reservoir. An important question remains unanswered: did the cat actually die due to SARS-CoV-2 infection?
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Affiliation(s)
- Nicolò Musso
- Section of Microbiology, Department of Biomedical and Biotechnological Sciences, University of Catania, 95123 Catania, Italy;
| | | | | | | | - Francesca Andronico
- Molecular Analysis and Biology Laboratory Biogene Catania, 95100 Catania, Italy; (F.A.); (R.V.); (G.E.)
| | - Stefano Stracquadanio
- Section of Microbiology, Department of Biomedical and Biotechnological Sciences, University of Catania, 95123 Catania, Italy;
| | - Luigi Liotta
- Department of Veterinary Science, University of Messina, 98122 Messina, Italy;
| | - Rosanna Visalli
- Molecular Analysis and Biology Laboratory Biogene Catania, 95100 Catania, Italy; (F.A.); (R.V.); (G.E.)
| | - Giovanni Emmanuele
- Molecular Analysis and Biology Laboratory Biogene Catania, 95100 Catania, Italy; (F.A.); (R.V.); (G.E.)
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724
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Development of a Multi-Criteria Model for Sustainable Reorganization of a Healthcare System in an Emergency Situation Caused by the COVID-19 Pandemic. SUSTAINABILITY 2020. [DOI: 10.3390/su12187504] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Healthcare systems worldwide are facing problems in providing health care to patients in a pandemic caused by the SARS-CoV-2 virus (COVID-19). The pandemic causes an extreme disease to spread with fluctuating needs among patients, which significantly affect the capacity and overall performance of healthcare systems. In addition, its impact on the sustainability of the entire economic and social system is enormous and certain sustainable management strategies need to be selected. To meet the challenges of the COVID-19 pandemic and ensure sustainable performance, national healthcare systems must adapt to new circumstances. This paper proposes an original multi-criteria methodology for the sustainable selection of strategic guidelines for the reorganization of a healthcare system under the conditions of the COVID-19 pandemic. The selection of an appropriate strategic guideline is made on the basis of defined criteria and depending on infection capacity and pandemic spread risk. The criteria for the evaluation of strategic guidelines were defined on the basis of a survey in which the medical personnel engaged in the crisis response team during the COVID-19 pandemic in the Republic of Serbia participated. The Level-Based Weight Assessment (LBWA) model and Measuring Attractiveness by a Categorical-Based Evaluation Technique (MACBETH) method were used to determine the weight coefficient criteria, while a novel fuzzy Ranking of Alternatives through Functional Mapping of Criterion Subintervals into a Single Interval (RAFSI) model was used to evaluate the strategic guidelines. The proposed multi-criteria methodology was tested in a case study in the Republic of Serbia. The validity of the proposed methodology is shown through the simulation of changes in input parameters of Bonferroni aggregation functions and through a comparison with other multi-criteria methodologies.
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725
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Contoyiannis Y, Stavrinides SG, P. Hanias M, Kampitakis M, Papadopoulos P, Picos R, M. Potirakis S. A Universal Physics-Based Model Describing COVID-19 Dynamics in Europe. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:E6525. [PMID: 32911647 PMCID: PMC7558066 DOI: 10.3390/ijerph17186525] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 09/04/2020] [Accepted: 09/06/2020] [Indexed: 12/17/2022]
Abstract
The self-organizing mechanism is a universal approach that is widely followed in nature. In this work, a novel self-organizing model describing diffusion over a lattice is introduced. Simulation results for the model's active lattice sites demonstrate an evolution curve that is very close to those describing the evolution of infected European populations by COVID-19. The model was further examined against real data regarding the COVID-19 epidemic for seven European countries (with a total population of 290 million) during the periods in which social distancing measures were imposed, namely Italy and Spain, which had an enormous spread of the disease; the successful case of Greece; and four central European countries: France, Belgium, Germany and the Netherlands. The value of the proposed model lies in its simplicity and in the fact that it is based on a universal natural mechanism, which through the presentation of an equivalent dynamical system apparently documents and provides a better understanding of the dynamical process behind viral epidemic spreads in general-even pandemics, such as in the case of COVID-19-further allowing us to come closer to controlling such situations. Finally, this model allowed the study of dynamical characteristics such as the memory effect, through the autocorrelation function, in the studied epidemiological dynamical systems.
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Affiliation(s)
- Yiannis Contoyiannis
- Department of Electrical and Electronics Engineering, University of West Attica, 12244 Athens, Greece; (Y.C.); (P.P.); (S.M.P.)
| | - Stavros G. Stavrinides
- School of Science and Technology, International Hellenic University, 57001 Thessaloniki, Greece
| | - Michael P. Hanias
- Physics Department, International Hellenic University, 65404 Kavala, Greece;
| | - Myron Kampitakis
- Major Network Installations Dept, Hellenic Electricity Distribution Network Operator SA, 18547 Athens, Greece;
| | - Pericles Papadopoulos
- Department of Electrical and Electronics Engineering, University of West Attica, 12244 Athens, Greece; (Y.C.); (P.P.); (S.M.P.)
| | - Rodrigo Picos
- Physics Department, University of Balearic Islands, 07122 Palma Majorca, Spain;
| | - Stelios M. Potirakis
- Department of Electrical and Electronics Engineering, University of West Attica, 12244 Athens, Greece; (Y.C.); (P.P.); (S.M.P.)
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726
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Borremans B, Gamble A, Prager KC, Helman SK, McClain AM, Cox C, Savage V, Lloyd-Smith JO. Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset. eLife 2020; 9:e60122. [PMID: 32894217 PMCID: PMC7508557 DOI: 10.7554/elife.60122] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 09/04/2020] [Indexed: 01/03/2023] Open
Abstract
Understanding and mitigating SARS-CoV-2 transmission hinges on antibody and viral RNA data that inform exposure and shedding, but extensive variation in assays, study group demographics and laboratory protocols across published studies confounds inference of true biological patterns. Our meta-analysis leverages 3214 datapoints from 516 individuals in 21 studies to reveal that seroconversion of both IgG and IgM occurs around 12 days post-symptom onset (range 1-40), with extensive individual variation that is not significantly associated with disease severity. IgG and IgM detection probabilities increase from roughly 10% at symptom onset to 98-100% by day 22, after which IgM wanes while IgG remains reliably detectable. RNA detection probability decreases from roughly 90% to zero by day 30, and is highest in feces and lower respiratory tract samples. Our findings provide a coherent evidence base for interpreting clinical diagnostics, and for the mathematical models and serological surveys that underpin public health policies.
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Affiliation(s)
- Benny Borremans
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
- I-BioStat, Data Science Institute, Hasselt UniversityHasseltBelgium
- Evolutionary Ecology Group, University of AntwerpAntwerpBelgium
| | - Amandine Gamble
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
| | - KC Prager
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
| | - Sarah K Helman
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
| | | | - Caitlin Cox
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
| | - Van Savage
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
- Biomathematics Department, University of California, Los AngelesLos AngelesUnited States
| | - James O Lloyd-Smith
- Ecology and Evolutionary Biology Department, University of California, Los AngelesLos AngelesUnited States
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727
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Nakamoto I, Wang S, Guo Y, Zhuang W. A QR Code-Based Contact Tracing Framework for Sustainable Containment of COVID-19: Evaluation of an Approach to Assist the Return to Normal Activity. JMIR Mhealth Uhealth 2020; 8:e22321. [PMID: 32841151 PMCID: PMC7481000 DOI: 10.2196/22321] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 07/28/2020] [Accepted: 08/18/2020] [Indexed: 01/16/2023] Open
Abstract
We discuss a pandemic management framework using symptom-based quick response (QR) codes to contain the spread of COVID-19. In this approach, symptom-based QR health codes are issued by public health authorities. The codes do not retrieve the location data of the users; instead, two different colors are displayed to differentiate the health status of individuals. The QR codes are officially regarded as electronic certificates of individuals' health status, and can be used for contact tracing, exposure risk self-triage, self-update of health status, health care appointments, and contact-free psychiatric consultations. This approach can be effectively deployed as a uniform platform interconnecting a variety of responders (eg, individuals, institutions, and public authorities) who are affected by the pandemic, which minimizes the errors of manual operation and the costs of fragmented coordination. At the same time, this approach enhances the promptness, interoperability, credibility, and traceability of containment measures. The proposed approach not only provides a supplemental mechanism for manual control measures but also addresses the partial failures of pandemic management tools in the abovementioned facets. The QR tool has been formally deployed in Fujian, a province located in southeast China that has a population of nearly 40 million people. All individuals aged ≥3 years were officially requested to present their QR code during daily public activities, such as when using public transportation systems, working at institutions, and entering or exiting schools. The deployment of this approach has achieved sizeable containment effects and played remarkable roles in shifting the negative gross domestic product (-6.8%) to a positive value by July 2020. The number of cumulative patients with COVID-19 in this setting was confined to 363, of whom 361 had recovered (recovery rate 99.4%) as of July 12, 2020. A simulation showed that if only partial measures of the framework were followed, the number of cumulative cases of COVID-19 could potentially increase ten-fold. This approach can serve as a reliable solution to counteract the emergency of a public health crisis; as a routine tool to enhance the level of public health; to accelerate the recovery of social activities; to assist decision making for policy makers; and as a sustainable measure that enables scalability.
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Affiliation(s)
- Ichiro Nakamoto
- School of Internet Economics and Business, Fujian University of Technology, Fuzhou, China
| | - Sheng Wang
- School of Internet Economics and Business, Fujian University of Technology, Fuzhou, China
| | - Yan Guo
- School of Internet Economics and Business, Fujian University of Technology, Fuzhou, China
| | - Weiqing Zhuang
- School of Internet Economics and Business, Fujian University of Technology, Fuzhou, China
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728
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Abstract
A mathematical analysis of patterns for the evolution of COVID-19 cases is key to the development of reliable and robust predictive models potentially leading to efficient and effective governance against COVID-19. Towards this objective, we study and analyze the temporal growth pattern of COVID-19 infection and death counts in various states of India. Our analysis up to August 4, 2020, shows that several states (namely Maharashtra, Tamil Nadu, West Bengal) have reached \documentclass[12pt]{minimal}
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\begin{document}$$t^2$$\end{document}t2 power-law growth, while Gujarat and Madhya Pradesh exhibit linear growth. Delhi has reached \documentclass[12pt]{minimal}
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\begin{document}$$\sqrt{t}$$\end{document}t phase and may flatten in the coming days. However, some states have deviated from the universal pattern of the epidemic curve. Uttar Pradesh and Rajasthan show a gradual rise in the power-law regime, which is not the usual trend. Also, Bihar, Karnataka, and Kerala are exhibiting a second wave. In addition, we report that initially, the death counts show similar behavior as the infection counts. Later, however, the death growth rate declines as compared to the infection growth due to better handling of critical cases and increased immunity of the population. These observations indicate that except Delhi, most of the Indian states are far from flattening their epidemic curves.
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729
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Barbarossa MV, Fuhrmann J, Meinke JH, Krieg S, Varma HV, Castelletti N, Lippert T. Modeling the spread of COVID-19 in Germany: Early assessment and possible scenarios. PLoS One 2020; 15:e0238559. [PMID: 32886696 PMCID: PMC7473552 DOI: 10.1371/journal.pone.0238559] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2020] [Accepted: 08/18/2020] [Indexed: 02/07/2023] Open
Abstract
The novel coronavirus (SARS-CoV-2), identified in China at the end of December 2019 and causing the disease COVID-19, has meanwhile led to outbreaks all over the globe with about 2.2 million confirmed cases and more than 150,000 deaths as of April 17, 2020. In this work, mathematical models are used to reproduce data of the early evolution of the COVID-19 outbreak in Germany, taking into account the effect of actual and hypothetical non-pharmaceutical interventions. Systems of differential equations of SEIR type are extended to account for undetected infections, stages of infection, and age groups. The models are calibrated on data until April 5. Data from April 6 to 14 are used for model validation. We simulate different possible strategies for the mitigation of the current outbreak, slowing down the spread of the virus and thus reducing the peak in daily diagnosed cases, the demand for hospitalization or intensive care units admissions, and eventually the number of fatalities. Our results suggest that a partial (and gradual) lifting of introduced control measures could soon be possible if accompanied by further increased testing activity, strict isolation of detected cases, and reduced contact to risk groups.
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Affiliation(s)
- Maria Vittoria Barbarossa
- Frankfurt Institute of Advanced Studies, Frankfurt, Germany
- Interdisciplinary Center for Scientific Computing, University of Heidelberg, Heidelberg, Germany
| | - Jan Fuhrmann
- Frankfurt Institute of Advanced Studies, Frankfurt, Germany
- Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
| | - Jan H. Meinke
- Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
| | - Stefan Krieg
- Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
| | - Hridya Vinod Varma
- Interdisciplinary Center for Scientific Computing, University of Heidelberg, Heidelberg, Germany
| | - Noemi Castelletti
- Institute of Radiation Medicine, Helmholtz Zentrum München, Neuherberg, Germany
- Statistical Consulting Unit StaBLab, Ludwig Maximilian University, München, Germany
| | - Thomas Lippert
- Frankfurt Institute of Advanced Studies, Frankfurt, Germany
- Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany
- Department of Mathematics and Computer Science, Goethe University Frankfurt, Frankfurt, Germany
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730
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Voutouri C, Nikmaneshi MR, Hardin CC, Patel AB, Verma A, Khandekar MJ, Dutta S, Stylianopoulos T, Munn LL, Jain RK. In silico dynamics of COVID-19 phenotypes for optimizing clinical management. RESEARCH SQUARE 2020:rs.3.rs-71086. [PMID: 32908974 PMCID: PMC7480033 DOI: 10.21203/rs.3.rs-71086/v1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Understanding the underlying mechanisms of COVID-19 progression and the impact of various pharmaceutical interventions is crucial for the clinical management of the disease. We developed a comprehensive mathematical framework based on the known mechanisms of the SARS-CoV-2 virus infection, incorporating the renin-angiotensin system and ACE2, which the virus exploits for cellular entry, key elements of the innate and adaptive immune responses, the role of inflammatory cytokines and the coagulation cascade for thrombus formation. The model predicts the evolution of viral load, immune cells, cytokines, thrombosis, and oxygen saturation based on patient baseline condition and the presence of co-morbidities. Model predictions were validated with clinical data from healthy people and COVID-19 patients, and the results were used to gain insight into identified risk factors of disease progression including older age, co-morbidities such as obesity, diabetes, and hypertension, and dysregulated immune response 1,2 . We then simulated treatment with various drug classes to identify optimal therapeutic protocols. We found that the outcome of any treatment depends on the sustained response rate of activated CD8 + T cells and sufficient control of the innate immune response. Furthermore, the best treatment -or combination of treatments - depends on the pre-infection health status of the patient. Our mathematical framework provides important insight into SARS-CoV-2 pathogenesis and could be used as the basis for personalized, optimal management of COVID-19.
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731
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Bastarache JA. The future of sepsis research: time to think differently? Am J Physiol Lung Cell Mol Physiol 2020; 319:L523-L526. [PMID: 32755382 PMCID: PMC7518062 DOI: 10.1152/ajplung.00368.2020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 08/03/2020] [Indexed: 01/21/2023] Open
Affiliation(s)
- Julie A Bastarache
- Division of Allergy, Pulmonary, and Critical Care Medicine, Department of Cell and Developmental Biology, and Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee
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732
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Kaxiras E, Neofotistos G, Angelaki E. The first 100 days: Modeling the evolution of the COVID-19 pandemic. CHAOS, SOLITONS, AND FRACTALS 2020; 138:110114. [PMID: 32834582 PMCID: PMC7351399 DOI: 10.1016/j.chaos.2020.110114] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Revised: 07/08/2020] [Accepted: 07/09/2020] [Indexed: 05/07/2023]
Abstract
A simple analytical model for modeling the evolution of the 2020 COVID-19 pandemic is presented. The model is based on the numerical solution of the widely used Susceptible-Infectious-Removed (SIR) populations model for describing epidemics. We consider an expanded version of the original Kermack-McKendrick model, which includes a decaying value of the parameter β (the effective contact rate), interpreted as an effect of externally imposed conditions, to which we refer as the forced-SIR (FSIR) model. We introduce an approximate analytical solution to the differential equations that represent the FSIR model which gives very reasonable fits to real data for a number of countries over a period of 100 days (from the first onset of exponential increase, in China). The proposed model contains 3 adjustable parameters which are obtained by fitting actual data (up to April 28, 2020). We analyze these results to infer the physical meaning of the parameters involved. We use the model to make predictions about the total expected number of infections in each country as well as the date when the number of infections will have reached 99% of this total. We also compare key findings of the model with recently reported results on the high contagiousness and rapid spread of the disease.
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Affiliation(s)
- Efthimios Kaxiras
- Institute for Applied Computational Science, Harvard J.A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
- Department of Physics, Harvard University, Cambridge, MA, USA
| | - Georgios Neofotistos
- Institute for Applied Computational Science, Harvard J.A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
- Department of Physics, University of Crete, Heraklion, Greece
| | - Eleni Angelaki
- Harvard J.A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA,USA
- Department of Physics, University of Crete, Heraklion, Greece
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733
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Higazy M. Novel fractional order SIDARTHE mathematical model of COVID-19 pandemic. CHAOS, SOLITONS, AND FRACTALS 2020; 138:110007. [PMID: 32565624 PMCID: PMC7293538 DOI: 10.1016/j.chaos.2020.110007] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/11/2020] [Accepted: 06/12/2020] [Indexed: 05/18/2023]
Abstract
Nowadays, COVID-19 has put a significant responsibility on all of us around the world from its detection to its remediation. The globe suffer from lockdown due to COVID-19 pandemic. The researchers are doing their best to discover the nature of this pandemic and try to produce the possible plans to control it. One of the most effective method to understand and control the evolution of this pandemic is to model it via an efficient mathematical model. In this paper, we propose to model COVID-19 pandemic by fractional order SIDARTHE model which did not appear in the literature before. The existence of a stable solution of the fractional order COVID-19 SIDARTHE model is proved and the fractional order necessary conditions of four proposed control strategies are produced. The sensitivity of the fractional order COVID-19 SIDARTHE model to the fractional order and the infection rate parameters are displayed. All studies are numerically simulated using MATLAB software via fractional order differential equation solver.
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Affiliation(s)
- M Higazy
- Department of Mathematics and Statistics, Faculty of Science, Taif University, Saudi Arabia
- Department of Physics and Engineering Mathematics, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt
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734
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Kumar A, Rani P, Kumar R, Sharma V, Purohit SR. Data-driven modelling and prediction of COVID-19 infection in India and correlation analysis of the virus transmission with socio-economic factors. Diabetes Metab Syndr 2020; 14:1231-1240. [PMID: 32683321 PMCID: PMC7347321 DOI: 10.1016/j.dsx.2020.07.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Revised: 07/02/2020] [Accepted: 07/04/2020] [Indexed: 01/01/2023]
Abstract
AIMS The current study attempts to model the COVID-19 outbreak in India, USA, China, Japan, Italy, Iran, Canada and Germany. The interactions of coronavirus transmission with socio-economic factors in India using the multivariate approach were also investigated. METHODS Actual cumulative infected population data from 15 February to May 15, 2020 was used for determination of parameters of a nested exponential statistical model, which were further employed for the prediction of infection. Correlation and Principal component analysis provided the relationships of coronavirus spread with socio-economic factors of different states of India using the Rstudio software. RESULTS Cumulative infection and spreadability rate predicted by the model was in good agreement with the actual observed data for all countries (R2 = 0.985121 to 0.999635, and MD = 1.2-7.76%) except Iran (R2 = 0.996316, and MD = 18.38%). Currently, the infection rate in India follows an upward trajectory, while other countries show a downward trend. The model claims that India is likely to witness an increased spreading rate of COVID-19 in June and July. Moreover, the flattening of the cumulative infected population is expected to be obtained in October infecting more than 12 lakhs people. Indian states with higher population were more susceptible to virus infection. CONCLUSIONS A long-term prediction of cumulative cases, spreadability rate, pandemic peak of COVID-19 was made for India. Prediction provided by the model considering most recent data is useful for making appropriate interventions to deal with the rapidly emerging pandemic.
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Affiliation(s)
- Amit Kumar
- Agricultural and Food Engineering Department, Indian Institute of Technology Kharagpur, West Bengal, 721302, India.
| | - Poonam Rani
- Agricultural and Food Engineering Department, Indian Institute of Technology Kharagpur, West Bengal, 721302, India.
| | - Rahul Kumar
- Vignan's Foundation for Science Technology and Research, Guntur, Andhra Pradesh, 522213, India.
| | - Vasudha Sharma
- Department of Food Technology, Jamia Hamdard, New Delhi, 110062, India.
| | - Soumya Ranjan Purohit
- Amity Institute of Food Technology, Amity University Uttar Pradesh, Noida, 201313, India.
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735
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Higazy M. Novel fractional order SIDARTHE mathematical model of COVID-19 pandemic. CHAOS, SOLITONS, AND FRACTALS 2020; 138:110007. [PMID: 32565624 DOI: 10.1016/j.chaos.2020.109967] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/11/2020] [Accepted: 06/12/2020] [Indexed: 05/29/2023]
Abstract
Nowadays, COVID-19 has put a significant responsibility on all of us around the world from its detection to its remediation. The globe suffer from lockdown due to COVID-19 pandemic. The researchers are doing their best to discover the nature of this pandemic and try to produce the possible plans to control it. One of the most effective method to understand and control the evolution of this pandemic is to model it via an efficient mathematical model. In this paper, we propose to model COVID-19 pandemic by fractional order SIDARTHE model which did not appear in the literature before. The existence of a stable solution of the fractional order COVID-19 SIDARTHE model is proved and the fractional order necessary conditions of four proposed control strategies are produced. The sensitivity of the fractional order COVID-19 SIDARTHE model to the fractional order and the infection rate parameters are displayed. All studies are numerically simulated using MATLAB software via fractional order differential equation solver.
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Affiliation(s)
- M Higazy
- Department of Mathematics and Statistics, Faculty of Science, Taif University, Saudi Arabia
- Department of Physics and Engineering Mathematics, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt
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736
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Alkahtani BST, Alzaid SS. A novel mathematics model of covid-19 with fractional derivative. Stability and numerical analysis. CHAOS, SOLITONS, AND FRACTALS 2020; 138:110006. [PMID: 32565623 PMCID: PMC7298553 DOI: 10.1016/j.chaos.2020.110006] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Revised: 06/05/2020] [Accepted: 06/12/2020] [Indexed: 05/04/2023]
Abstract
a mathematical model depicting the spread of covid-19 epidemic and implementation of population covid-19 intervention in Italy. The model has 8 components leading to system of 8 ordinary differential equations. In this paper, we investigate the model using the concept of fractional differential operator. A numerical method based on the Lagrange polynomial was used to solve the system equations depicting the spread of COVID-19. A detailed investigation of stability including reproductive number using the next generation matrix, and the Lyapunov were presented in detail. Numerical simulations are depicted for various fractional orders.
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Affiliation(s)
- Badr Saad T Alkahtani
- Department of Mathematics, College of Science, King Saud University, P.O. Box 1142, Riyadh 11989, Saudi Arabia
| | - Sara Salem Alzaid
- Department of Mathematics, College of Science, King Saud University, P.O. Box 1142, Riyadh 11989, Saudi Arabia
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737
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Sartor G, Del Riccio M, Dal Poz I, Bonanni P, Bonaccorsi G. COVID-19 in Italy: Considerations on official data. Int J Infect Dis 2020; 98:188-190. [PMID: 32574692 PMCID: PMC7305727 DOI: 10.1016/j.ijid.2020.06.060] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 06/15/2020] [Accepted: 06/17/2020] [Indexed: 01/06/2023] Open
Abstract
COVID-19 represents a major public health issue in Italy; estimating the size of the outbreak could direct public health policies and inform us of the extent of the reorganization needed in the healthcare system, the efficacy of quarantine measures, and eventually on the achievement of herd immunity. To chart the real extent of COVID-19 infection in Italy official data need to be interpreted, considering various aspects such as the "suspected-case" definition that changed during recent months, the management of asymptomatic and untested symptomatic cases, the system for reporting deaths, and short-term fluctuations. All these aspects should be considered when reflecting on the meaning of the official COVID-19 figures in Italy. Regionalization of the healthcare system and fragmentation of data represent real challenges in the management of the COVID-19 outbreak in Italy. The authors' opinion is that transparent and accurate reporting could guide policy-making and help reorganize health services.
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Affiliation(s)
- Gino Sartor
- Department of Health Sciences, University of Florence, Florence, Italy
| | - Marco Del Riccio
- Department of Health Sciences, University of Florence, Florence, Italy.
| | - Irene Dal Poz
- Institute of Advanced Studies, University of Warwick, Coventry, United Kingdom
| | - Paolo Bonanni
- Department of Health Sciences, University of Florence, Florence, Italy
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738
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Ayinde K, Lukman AF, Rauf RI, Alabi OO, Okon CE, Ayinde OE. Modeling Nigerian Covid-19 cases: A comparative analysis of models and estimators. CHAOS, SOLITONS, AND FRACTALS 2020; 138:109911. [PMID: 32536757 PMCID: PMC7282783 DOI: 10.1016/j.chaos.2020.109911] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 05/10/2020] [Accepted: 05/17/2020] [Indexed: 05/04/2023]
Abstract
COVID-19 remains a major pandemic currently threatening all the countries of the world. In Nigeria, there were 1, 932 COVID-19 confirmed cases, 319 discharged cases and 58 deaths as of 30th April 2020. This paper, therefore, subjected the daily cumulative reported COVID-19 cases of these three variables to nine (9) curve estimation statistical models in simple, quadratic, cubic, and quartic forms. It further identified the best of the thirty-six (36) models and used the same for prediction and forecasting purposes. The data collected by the Nigeria Centre for Disease Control for sixty-four (64) days, two (2) months and three (3), were daily monitored and eventually analyzed. We identified the best models to be Quartic Linear Regression Model with an autocorrelated error of order 1 (AR(1)); and found the Ordinary Least Squares, Cochrane Orcutt, Hildreth-Lu, and Prais-Winsten and Least Absolute Deviation (LAD) estimators useful to estimate the models' parameters. Consequently, we recommended the daily cumulative forecast values of the LAD estimator for May and June 2020 with a 99% confidence level. The forecast values are alarming, and so, the Nigerian Government needs to hastily review her activities and interventions towards COVID-19 to provide some tactical and robust structures and measures to avert these challenges.
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Affiliation(s)
- Kayode Ayinde
- Department of Statistics, Federal University of Technology, Akure, Nigeria
| | - Adewale F Lukman
- Department of Mathematics, Landmark University, Omu-Aran, Kwara State, Nigeria
| | - Rauf I Rauf
- Department of Statistics, University of Abuja, Abuja, Nigeria
| | - Olusegun O Alabi
- Department of Statistics, Federal University of Technology, Akure, Nigeria
| | - Charles E Okon
- Department of Statistics, Federal University of Technology, Akure, Nigeria
| | - Opeyemi E Ayinde
- Department of Agric-Economics and Farm Management, University of Ilorin, Nigeria
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739
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Rowthorn R, Maciejowski J. A cost–benefit analysis of the COVID-19 disease. OXFORD REVIEW OF ECONOMIC POLICY 2020:graa030. [PMCID: PMC7499782 DOI: 10.1093/oxrep/graa030] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The British government has been debating how to escape from the lockdown without provoking a resurgence of the COVID-19 disease. There is a growing recognition of the damage the lockdown has caused to economic and social life. This paper presents a simple cost–benefit analysis inspired by optimal control theory and incorporating the SIR model of disease propagation. It also reports simulations informed by the theoretical discussion. The optimal path for government intervention is computed under a variety of conditions. These include a cap on the permitted level of infection to avoid overload of the health system, and the introduction of a test and trace system. We quantify the benefits of early intervention to control the disease. We also examine how the government’s valuation of life influences the optimal path. A 10-week lockdown is only optimal if the value of life for COVID-19 victims exceeds £10m. The study is based on a standard but simple epidemiological model, and should therefore be regarded as presenting a methodological framework rather than giving policy prescriptions.
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Affiliation(s)
- Robert Rowthorn
- Emeritus Professor of Economics, University of Cambridge
- e-mail:
| | - Jan Maciejowski
- Emeritus Professor of Control Engineering, University of Cambridge
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740
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Bonacini L, Gallo G, Patriarca F. Identifying policy challenges of COVID-19 in hardly reliable data and judging the success of lockdown measures. JOURNAL OF POPULATION ECONOMICS 2020; 34:275-301. [PMID: 32868965 DOI: 10.1007/s00148-02000799-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 08/19/2020] [Indexed: 05/26/2023]
Abstract
Identifying structural breaks in the dynamics of COVID-19 contagion is crucial to promptly assess policies and evaluate the effectiveness of lockdown measures. However, official data record infections after a critical and unpredictable delay. Moreover, people react to the health risks of the virus and also anticipate lockdowns. All of this makes it complex to quickly and accurately detect changing patterns in the virus's infection dynamic. We propose a machine learning procedure to identify structural breaks in the time series of COVID-19 cases. We consider the case of Italy, an early-affected country that was unprepared for the situation, and detect the dates of structural breaks induced by three national lockdowns so as to evaluate their effects and identify some related policy issues. The strong but significantly delayed effect of the first lockdown suggests a relevant announcement effect. In contrast, the last lockdown had significantly less impact. The proposed methodology is robust as a real-time procedure for early detection of the structural breaks: the impact of the first two lockdowns could have been correctly identified just the day after they actually occurred.
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Affiliation(s)
- Luca Bonacini
- University of Modena and Reggio Emilia, Modena, Italy
| | - Giovanni Gallo
- University of Modena and Reggio Emilia, Modena, Italy
- National Institute for Public Policies Analysis (INAPP), Rome, Italy
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741
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Bertuzzo E, Mari L, Pasetto D, Miccoli S, Casagrandi R, Gatto M, Rinaldo A. The geography of COVID-19 spread in Italy and implications for the relaxation of confinement measures. Nat Commun 2020; 11:4264. [PMID: 32848152 PMCID: PMC7449964 DOI: 10.1038/s41467-020-18050-2] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 07/24/2020] [Indexed: 11/09/2022] Open
Abstract
The pressing need to restart socioeconomic activities locked-down to control the spread of SARS-CoV-2 in Italy must be coupled with effective methodologies to selectively relax containment measures. Here we employ a spatially explicit model, properly attentive to the role of inapparent infections, capable of: estimating the expected unfolding of the outbreak under continuous lockdown (baseline trajectory); assessing deviations from the baseline, should lockdown relaxations result in increased disease transmission; calculating the isolation effort required to prevent a resurgence of the outbreak. A 40% increase in effective transmission would yield a rebound of infections. A control effort capable of isolating daily ~5.5% of the exposed and highly infectious individuals proves necessary to maintain the epidemic curve onto the decreasing baseline trajectory. We finally provide an ex-post assessment based on the epidemiological data that became available after the initial analysis and estimate the actual disease transmission that occurred after weakening the lockdown.
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Affiliation(s)
- Enrico Bertuzzo
- Dipartimento di Scienze Ambientali, Informatica e Statistica, Universitá Ca' Foscari Venezia, 30172, Venezia-Mestre, IT, Italy
- Science of Complexity Research Unit, European Centre for Living Technology, 30123, Venice, IT, Italy
| | - Lorenzo Mari
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133, Milano, IT, Italy
| | - Damiano Pasetto
- Dipartimento di Scienze Ambientali, Informatica e Statistica, Universitá Ca' Foscari Venezia, 30172, Venezia-Mestre, IT, Italy
| | - Stefano Miccoli
- Dipartimento di Meccanica, Politecnico di Milano, 20156, Milano, IT, Italy
| | - Renato Casagrandi
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133, Milano, IT, Italy
| | - Marino Gatto
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, 20133, Milano, IT, Italy
| | - Andrea Rinaldo
- Laboratory of Ecohydrology, École Polytechnique Fédérale de Lausanne, 1015, Lausanne, CH, Switzerland.
- Dipartimento ICEA, Universitá di Padova, 35131, Padova, IT, Italy.
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742
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Jiang X, Chang L, Shi Y. A retrospective analysis of the dynamic transmission routes of the COVID-19 in mainland China. Sci Rep 2020; 10:14015. [PMID: 32814822 PMCID: PMC7438497 DOI: 10.1038/s41598-020-71023-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 08/04/2020] [Indexed: 11/12/2022] Open
Abstract
The fourth outbreak of the Coronaviruses, known as the COVID-19, has occurred in Wuhan city of Hubei province in China in December 2019. We propose a time-varying sparse vector autoregressive (VAR) model to retrospectively analyze and visualize the dynamic transmission routes of this outbreak in mainland China over January 31-February 19, 2020. Our results demonstrate that the influential inter-location routes from Hubei have become unidentifiable since February 4, 2020, whereas the self-transmission in each provincial-level administrative region (location, hereafter) was accelerating over February 4-15, 2020. From February 16, 2020, all routes became less detectable, and no influential transmissions could be identified on February 18 and 19, 2020. Such evidence supports the effectiveness of government interventions, including the travel restrictions in Hubei. Implications of our results suggest that in addition to the origin of the outbreak, virus preventions are of crucial importance in locations with the largest migrant workers percentages (e.g., Jiangxi, Henan and Anhui) to controlling the spread of COVID-19.
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Affiliation(s)
- Xiandeng Jiang
- School of Public Finance and Taxation, Southwestern University of Finance and Economics, Chengdu, 611130, Sichuan, People's Republic of China
| | - Le Chang
- Research School of Finance, Actuarial Studies, and Statistics, Australian National University, Canberra, ACT, 2601, Australia
| | - Yanlin Shi
- Department of Actuarial Studies and Business Analytics, Macquarie University, Sydney, NSW, 2109, Australia.
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743
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Khan MA, Atangana A, Alzahrani E, Fatmawati. The dynamics of COVID-19 with quarantined and isolation. ADVANCES IN DIFFERENCE EQUATIONS 2020; 2020:425. [PMID: 32834821 PMCID: PMC7427274 DOI: 10.1186/s13662-020-02882-9] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/04/2020] [Indexed: 05/18/2023]
Abstract
In the present paper, we formulate a new mathematical model for the dynamics of COVID-19 with quarantine and isolation. Initially, we provide a brief discussion on the model formulation and provide relevant mathematical results. Then, we consider the fractal-fractional derivative in Atangana-Baleanu sense, and we also generalize the model. The generalized model is used to obtain its stability results. We show that the model is locally asymptotically stable if R 0 < 1 . Further, we consider the real cases reported in China since January 11 till April 9, 2020. The reported cases have been used for obtaining the real parameters and the basic reproduction number for the given period, R 0 ≈ 6.6361 . The data of reported cases versus model for classical and fractal-factional order are presented. We show that the fractal-fractional order model provides the best fitting to the reported cases. The fractional mathematical model is solved by a novel numerical technique based on Newton approach, which is useful and reliable. A brief discussion on the graphical results using the novel numerical procedures are shown. Some key parameters that show significance in the disease elimination from the society are explored.
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Affiliation(s)
- Muhammad Altaf Khan
- Informetrics Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Faculty of Mathematics and Statistics, Ton Duc Thang University, Ho Chi Minh City, Vietnam
| | - Abdon Atangana
- Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontien, South Africa
- Department of Medical Research, China Medical University Hospital, Taichung, Taiwan
| | - Ebraheem Alzahrani
- Department of Mathematics, Faculty of Science, King Abdulaziz University, P. O. Box 80203, Jeddah, 21589 Saudi Arabia
| | - Fatmawati
- Department of Mathematics, Faculty of Science and Technology, Universitas Airlangga, 60115 Surabaya, Indonesia
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744
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Babac MB, Mornar V. Resetting the Initial Conditions for Calculating Epidemic Spread: COVID-19 Outbreak in Italy. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2020; 8:148021-148030. [PMID: 34786281 PMCID: PMC8545335 DOI: 10.1109/access.2020.3015923] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 07/31/2020] [Indexed: 06/13/2023]
Abstract
Confirmed cases of the disease COVID-19 have spread to more than 200 countries and regions of the world within a few months. Although the authorities report the number of new cases on daily basis, there remains a gap between the number of reported cases and actual number of cases in a population. One way to bridge this gap is to gain more in-depth understanding of the disease. In this paper, we have used the recent findings about the clinical courses of inpatients with COVID-19 to reset the initial conditions of the epidemic process in order to estimate more realistic number of cases in the population. By translating the reported cases certain number of days earlier with regard to an average clinical course of the disease, we have obtained much higher number of cases, which suggests that the actual number of infected cases and death rate might have been higher than reported. Based on the outbreak of COVID-19 in Italy, this paper shows an estimate of the number of infected cases based on infection and removal rates from data during the pandemic.
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Affiliation(s)
- Marina Bagić Babac
- Faculty of Electrical Engineering and ComputingUniversity of Zagreb10000ZagrebCroatia
| | - Vedran Mornar
- Faculty of Electrical Engineering and ComputingUniversity of Zagreb10000ZagrebCroatia
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745
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Hui H, Zhou C, Lü X, Li J. Spread mechanism and control strategy of social network rumors under the influence of COVID-19. NONLINEAR DYNAMICS 2020; 101:1933-1949. [PMID: 32836821 PMCID: PMC7416597 DOI: 10.1007/s11071-020-05842-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 07/22/2020] [Indexed: 05/24/2023]
Abstract
Since the outbreak of coronavirus disease in 2019 (COVID-19), the disease has rapidly spread to the world, and the cumulative number of cases is now more than 2.3 million. We aim to study the spread mechanism of rumors on social network platform during the spread of COVID-19 and consider education as a control measure of the spread of rumors. Firstly, a novel epidemic-like model is established to characterize the spread of rumor, which depends on the nonautonomous partial differential equation. Furthermore, the registration time of network users is abstracted as 'age,' and the spreading principle of rumors is described from two dimensions of age and time. Specifically, the susceptible users are divided into higher-educators class and lower-educators class, in which the higher-educators class will be immune to rumors with a higher probability and the lower-educators class is more likely to accept and spread the rumors. Secondly, the existence and uniqueness of the solution is discussed and the stability of steady-state solution of the model is obtained. Additionally, an interesting conclusion is that the education level of the crowd is an essential factor affecting the final scale of the spread of rumors. Finally, some control strategies are presented to effectively restrain the rumor propagation, and numerical simulations are carried out to verify the main theoretical results.
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Affiliation(s)
- Hongwen Hui
- School of Computer and Communication Engineering University of Science and Technology Beijing, Beijing, 100083 China
| | - Chengcheng Zhou
- School of Computer and Communication Engineering University of Science and Technology Beijing, Beijing, 100083 China
| | - Xing Lü
- School of Computer and Communication Engineering University of Science and Technology Beijing, Beijing, 100083 China
- Department of Mathematics, Beijing Jiaotong University, Beijing, 100044 China
| | - Jiarong Li
- College of Mathematics and Systems Science, Xinjiang University, Urumqi, 830046 China
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746
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Yang P, Qi J, Zhang S, Wang X, Bi G, Yang Y, Sheng B, Yang G. Feasibility study of mitigation and suppression strategies for controlling COVID-19 outbreaks in London and Wuhan. PLoS One 2020; 15:e0236857. [PMID: 32760081 PMCID: PMC7410247 DOI: 10.1371/journal.pone.0236857] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 07/15/2020] [Indexed: 12/21/2022] Open
Abstract
Recent outbreaks of coronavirus disease 2019 (COVID-19) has led a global pandemic cross the world. Most countries took two main interventions: suppression like immediate lockdown cities at epicenter or mitigation that slows down but not stopping epidemic for reducing peak healthcare demand. Both strategies have their apparent merits and limitations; it becomes extremely hard to conduct one intervention as the most feasible way to all countries. Targeting at this problem, this paper conducted a feasibility study by defining a mathematical model named SEMCR, it extended traditional SEIR (Susceptible-Exposed-Infectious-Recovered) model by adding two key features: a direct connection between Exposed and Recovered populations, and separating infections into mild and critical cases. It defined parameters to classify two stages of COVID-19 control: active contain by isolation of cases and contacts, passive contain by suppression or mitigation. The model was fitted and evaluated with public dataset containing daily number of confirmed active cases including Wuhan and London during January 2020 and March 2020. The simulated results showed that 1) Immediate suppression taken in Wuhan significantly reduced the total exposed and infectious populations, but it has to be consistently maintained at least 90 days (by the middle of April 2020). Without taking this intervention, we predict the number of infections would have been 73 folders higher by the middle of April 2020. Its success requires efficient government initiatives and effective collaborative governance for mobilizing of corporate resources to provide essential goods. This mode may be not suitable to other countries without efficient collaborative governance and sufficient health resources. 2) In London, it is possible to take a hybrid intervention of suppression and mitigation for every 2 or 3 weeks over a longer period to balance the total infections and economic loss. While the total infectious populations in this scenario would be possibly 2 times than the one taking suppression, economic loss and recovery of London would be less affected. 3) Both in Wuhan and London cases, one important issue of fitting practical data was that there were a portion (probably 62.9% in Wuhan) of self-recovered populations that were asymptomatic or mild symptomatic. This finding has been recently confirmed by other studies that the seroprevalence in Wuhan varied between 3.2% and 3.8% in different sub-regions. It highlights that the epidemic is far from coming to an end by means of herd immunity. Early release of intervention intensity potentially increased a risk of the second outbreak.
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Affiliation(s)
- Po Yang
- Department of Computer Science, The University of Sheffield, Sheffield, United Kingdom
- The State Key Laboratory of Fluid Power and Electronic Systems, School of Mechanical Engineering, Zhejiang University, China
| | - Jun Qi
- Department of Engineering Science, University of Oxford, Oxford, United Kingdom
- Department of Computer Science and Software Engineering, Xi’an Jiaotong-Liverpool University, Suzhou, China
| | - Shuhao Zhang
- School of Software, Yunnan University, Yunnan, China
| | - Xulong Wang
- School of Software, Yunnan University, Yunnan, China
| | - Gaoshan Bi
- School of Software, Yunnan University, Yunnan, China
| | - Yun Yang
- School of Software, Yunnan University, Yunnan, China
| | - Bin Sheng
- Department of Computer Science and Engineering, Shanghai JiaoTong University, Shanghai, China
| | - Geng Yang
- The State Key Laboratory of Fluid Power and Electronic Systems, School of Mechanical Engineering, Zhejiang University, China
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747
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Loli Piccolomini E, Zama F. Monitoring Italian COVID-19 spread by a forced SEIRD model. PLoS One 2020; 15:e0237417. [PMID: 32760133 PMCID: PMC7410324 DOI: 10.1371/journal.pone.0237417] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 07/27/2020] [Indexed: 12/03/2022] Open
Abstract
Due to the recent evolution of the COVID-19 outbreak, the scientific community is making efforts to analyse models for understanding the present situation and for predicting future scenarios. In this paper, we propose a forced Susceptible-Exposed-Infected-Recovered-Dead (fSEIRD) differential model for the analysis and forecast of the COVID-19 spread in Italian regions, using the data from the Italian Protezione Civile (Italian Civil Protection Department) from 24/02/2020. In this study, we investigate an adaptation of fSEIRD by proposing two different piecewise time-dependent infection rate functions to fit the current epidemic data affected by progressive movement restriction policies put in place by the Italian government. The proposed models are flexible and can be quickly adapted to monitor various epidemic scenarios. Results on the regions of Lombardia and Emilia-Romagna confirm that the proposed models fit the data very accurately and make reliable predictions.
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Affiliation(s)
| | - Fabiana Zama
- Department of Mathematics, University of Bologna, Bologna, Italy
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748
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Excess Deaths and Hospital Admissions for COVID-19 Due to a Late Implementation of the Lockdown in Italy. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17165644. [PMID: 32764381 PMCID: PMC7459617 DOI: 10.3390/ijerph17165644] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Revised: 07/30/2020] [Accepted: 08/02/2020] [Indexed: 01/10/2023]
Abstract
In Italy, the COVID-19 epidemic curve started to flatten when the health system had already exceeded its capacity, raising concerns that the lockdown was indeed delayed. The aim of this study was to evaluate the health effects of late implementation of the lockdown in Italy. Using national data on the daily number of COVID-19 cases, we first estimated the effect of the lockdown, employing an interrupted time series analysis. Second, we evaluated the effect of an early lockdown on the trend of new cases, creating a counterfactual scenario where the intervention was implemented one week in advance. We then predicted the corresponding number of intensive care unit (ICU) admissions, non-ICU admissions, and deaths. Finally, we compared results under the actual and counterfactual scenarios. An early implementation of the lockdown would have avoided about 126,000 COVID-19 cases, 54,700 non-ICU admissions, 15,600 ICU admissions, and 12,800 deaths, corresponding to 60% (95%CI: 55% to 64%), 52% (95%CI: 46% to 57%), 48% (95%CI: 42% to 53%), and 44% (95%CI: 38% to 50%) reduction, respectively. We found that the late implementation of the lockdown in Italy was responsible for a substantial proportion of hospital admissions and deaths associated with the COVID-19 pandemic.
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749
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Martínez-Álvarez F, Asencio-Cortés G, Torres JF, Gutiérrez-Avilés D, Melgar-García L, Pérez-Chacón R, Rubio-Escudero C, Riquelme JC, Troncoso A. Coronavirus Optimization Algorithm: A Bioinspired Metaheuristic Based on the COVID-19 Propagation Model. BIG DATA 2020; 8:308-322. [PMID: 32716641 DOI: 10.1089/big.2020.0051] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
This study proposes a novel bioinspired metaheuristic simulating how the coronavirus spreads and infects healthy people. From a primary infected individual (patient zero), the coronavirus rapidly infects new victims, creating large populations of infected people who will either die or spread infection. Relevant terms such as reinfection probability, super-spreading rate, social distancing measures, or traveling rate are introduced into the model to simulate the coronavirus activity as accurately as possible. The infected population initially grows exponentially over time, but taking into consideration social isolation measures, the mortality rate, and number of recoveries, the infected population gradually decreases. The coronavirus optimization algorithm has two major advantages when compared with other similar strategies. First, the input parameters are already set according to the disease statistics, preventing researchers from initializing them with arbitrary values. Second, the approach has the ability to end after several iterations, without setting this value either. Furthermore, a parallel multivirus version is proposed, where several coronavirus strains evolve over time and explore wider search space areas in less iterations. Finally, the metaheuristic has been combined with deep learning models, to find optimal hyperparameters during the training phase. As application case, the problem of electricity load time series forecasting has been addressed, showing quite remarkable performance.
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Affiliation(s)
- F Martínez-Álvarez
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - G Asencio-Cortés
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - J F Torres
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - D Gutiérrez-Avilés
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - L Melgar-García
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - R Pérez-Chacón
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
| | - C Rubio-Escudero
- Department of Computer Science, University of Seville, Seville, Spain
| | - J C Riquelme
- Department of Computer Science, University of Seville, Seville, Spain
| | - A Troncoso
- Data Science and Big Data Lab, Pablo de Olavide University, Seville, Spain
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750
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Tagliazucchi E, Balenzuela P, Travizano M, Mindlin G, Mininni P. Lessons from being challenged by COVID-19. CHAOS, SOLITONS, AND FRACTALS 2020; 137:109923. [PMID: 32501375 PMCID: PMC7245296 DOI: 10.1016/j.chaos.2020.109923] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 05/18/2020] [Indexed: 05/21/2023]
Abstract
We present results of different approaches to model the evolution of the COVID-19 epidemic in Argentina, with a special focus on the megacity conformed by the city of Buenos Aires and its metropolitan area, including a total of 41 districts with over 13 million inhabitants. We first highlight the relevance of interpreting the early stage of the epidemic in light of incoming infectious travelers from abroad. Next, we critically evaluate certain proposed solutions to contain the epidemic based on instantaneous modifications of the reproductive number. Finally, we build increasingly complex and realistic models, ranging from simple homogeneous models used to estimate local reproduction numbers, to fully coupled inhomogeneous (deterministic or stochastic) models incorporating mobility estimates from cell phone location data. The models are capable of producing forecasts highly consistent with the official number of cases with minimal parameter fitting and fine-tuning. We discuss the strengths and limitations of the proposed models, focusing on the validity of different necessary first approximations, and caution future modeling efforts to exercise great care in the interpretation of long-term forecasts, and in the adoption of non-pharmaceutical interventions backed by numerical simulations.
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Affiliation(s)
- E. Tagliazucchi
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, & IFIBA, CONICET, Ciudad Universitaria, Buenos Aires 1428, Argentina
| | - P. Balenzuela
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, & IFIBA, CONICET, Ciudad Universitaria, Buenos Aires 1428, Argentina
| | - M. Travizano
- Grandata Labs, 550 15th Street, San Francisco, 94103, California, USA
| | - G.B. Mindlin
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, & IFIBA, CONICET, Ciudad Universitaria, Buenos Aires 1428, Argentina
| | - P.D. Mininni
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Física, & IFIBA, CONICET, Ciudad Universitaria, Buenos Aires 1428, Argentina
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