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Deo DR, Willett FR, Avansino DT, Hochberg LR, Henderson JM, Shenoy KV. Brain control of bimanual movement enabled by recurrent neural networks. Sci Rep 2024; 14:1598. [PMID: 38238386 PMCID: PMC10796685 DOI: 10.1038/s41598-024-51617-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 01/07/2024] [Indexed: 01/22/2024] Open
Abstract
Brain-computer interfaces have so far focused largely on enabling the control of a single effector, for example a single computer cursor or robotic arm. Restoring multi-effector motion could unlock greater functionality for people with paralysis (e.g., bimanual movement). However, it may prove challenging to decode the simultaneous motion of multiple effectors, as we recently found that a compositional neural code links movements across all limbs and that neural tuning changes nonlinearly during dual-effector motion. Here, we demonstrate the feasibility of high-quality bimanual control of two cursors via neural network (NN) decoders. Through simulations, we show that NNs leverage a neural 'laterality' dimension to distinguish between left and right-hand movements as neural tuning to both hands become increasingly correlated. In training recurrent neural networks (RNNs) for two-cursor control, we developed a method that alters the temporal structure of the training data by dilating/compressing it in time and re-ordering it, which we show helps RNNs successfully generalize to the online setting. With this method, we demonstrate that a person with paralysis can control two computer cursors simultaneously. Our results suggest that neural network decoders may be advantageous for multi-effector decoding, provided they are designed to transfer to the online setting.
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Affiliation(s)
- Darrel R Deo
- Department of Neurosurgery, Stanford University, Stanford, CA, USA.
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA.
| | - Francis R Willett
- Howard Hughes Medical Institute at Stanford University, Stanford, CA, USA
| | - Donald T Avansino
- Howard Hughes Medical Institute at Stanford University, Stanford, CA, USA
| | - Leigh R Hochberg
- School of Engineering, Brown University, Providence, RI, USA
- Carney Institute for Brain Science, Brown University, Providence, RI, USA
- VA RR&D Center for Neurorestoration and Neurotechnology, Rehabilitation R&D Service, Providence VA Medical Center, Providence, RI, USA
- Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Jaimie M Henderson
- Department of Neurosurgery, Stanford University, Stanford, CA, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
- Bio-X Institute, Stanford University, Stanford, CA, USA
| | - Krishna V Shenoy
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
- Howard Hughes Medical Institute at Stanford University, Stanford, CA, USA
- Bio-X Institute, Stanford University, Stanford, CA, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA, USA
- Department of Bioengineering, Stanford University, Stanford, CA, USA
- Department of Neurobiology, Stanford University, Stanford, CA, USA
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52
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Papadopoulos S, Szul MJ, Congedo M, Bonaiuto JJ, Mattout J. Beta bursts question the ruling power for brain-computer interfaces. J Neural Eng 2024; 21:016010. [PMID: 38167234 DOI: 10.1088/1741-2552/ad19ea] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 01/02/2024] [Indexed: 01/05/2024]
Abstract
Objective: Current efforts to build reliable brain-computer interfaces (BCI) span multiple axes from hardware, to software, to more sophisticated experimental protocols, and personalized approaches. However, despite these abundant efforts, there is still room for significant improvement. We argue that a rather overlooked direction lies in linking BCI protocols with recent advances in fundamental neuroscience.Approach: In light of these advances, and particularly the characterization of the burst-like nature of beta frequency band activity and the diversity of beta bursts, we revisit the role of beta activity in 'left vs. right hand' motor imagery (MI) tasks. Current decoding approaches for such tasks take advantage of the fact that MI generates time-locked changes in induced power in the sensorimotor cortex and rely on band-passed power changes in single or multiple channels. Although little is known about the dynamics of beta burst activity during MI, we hypothesized that beta bursts should be modulated in a way analogous to their activity during performance of real upper limb movements.Main results and Significance: We show that classification features based on patterns of beta burst modulations yield decoding results that are equivalent to or better than typically used beta power across multiple open electroencephalography datasets, thus providing insights into the specificity of these bio-markers.
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Affiliation(s)
- Sotirios Papadopoulos
- University Lyon 1, Lyon, France
- Lyon Neuroscience Research Center, CRNL, INSERM U1028, CNRS, UMR5292, Lyon, France
- Institut de Sciences Cognitives Marc Jeannerod, CNRS, UMR5229, Lyon, France
| | - Maciej J Szul
- University Lyon 1, Lyon, France
- Institut de Sciences Cognitives Marc Jeannerod, CNRS, UMR5229, Lyon, France
| | - Marco Congedo
- GIPSA-lab, University Grenoble Alpes, CNRS, Grenoble-INP, Grenoble, France
| | - James J Bonaiuto
- University Lyon 1, Lyon, France
- Institut de Sciences Cognitives Marc Jeannerod, CNRS, UMR5229, Lyon, France
| | - Jérémie Mattout
- University Lyon 1, Lyon, France
- Lyon Neuroscience Research Center, CRNL, INSERM U1028, CNRS, UMR5292, Lyon, France
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53
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Tai P, Ding P, Wang F, Gong A, Li T, Zhao L, Su L, Fu Y. Brain-computer interface paradigms and neural coding. Front Neurosci 2024; 17:1345961. [PMID: 38287988 PMCID: PMC10822902 DOI: 10.3389/fnins.2023.1345961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 12/28/2023] [Indexed: 01/31/2024] Open
Abstract
Brain signal patterns generated in the central nervous system of brain-computer interface (BCI) users are closely related to BCI paradigms and neural coding. In BCI systems, BCI paradigms and neural coding are critical elements for BCI research. However, so far there have been few references that clearly and systematically elaborated on the definition and design principles of the BCI paradigm as well as the definition and modeling principles of BCI neural coding. Therefore, these contents are expounded and the existing main BCI paradigms and neural coding are introduced in the review. Finally, the challenges and future research directions of BCI paradigm and neural coding were discussed, including user-centered design and evaluation for BCI paradigms and neural coding, revolutionizing the traditional BCI paradigms, breaking through the existing techniques for collecting brain signals and combining BCI technology with advanced AI technology to improve brain signal decoding performance. It is expected that the review will inspire innovative research and development of the BCI paradigm and neural coding.
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Affiliation(s)
- Pengrui Tai
- Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
| | - Peng Ding
- Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
| | - Fan Wang
- Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
| | - Anmin Gong
- School of Information Engineering, Chinese People’s Armed Police Force Engineering University, Xi’an, China
| | - Tianwen Li
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
| | - Lei Zhao
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
- Faculty of Science, Kunming University of Science and Technology, Kunming, China
| | - Lei Su
- Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
| | - Yunfa Fu
- Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China
- Brain Cognition and Brain-Computer Intelligence Integration Group, Kunming University of Science and Technology, Kunming, China
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54
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Tucci DL. NIDCD's 5-year strategic plan seeks innovations in assistive device technologies. J Neural Eng 2024; 21:013002. [PMID: 38113536 PMCID: PMC10905644 DOI: 10.1088/1741-2552/ad171b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 12/19/2023] [Indexed: 12/21/2023]
Affiliation(s)
- Debara L Tucci
- National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Bethesda, MD, United States of America
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55
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Griggs WS, Norman SL, Deffieux T, Segura F, Osmanski BF, Chau G, Christopoulos V, Liu C, Tanter M, Shapiro MG, Andersen RA. Decoding motor plans using a closed-loop ultrasonic brain-machine interface. Nat Neurosci 2024; 27:196-207. [PMID: 38036744 PMCID: PMC10774125 DOI: 10.1038/s41593-023-01500-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 10/16/2023] [Indexed: 12/02/2023]
Abstract
Brain-machine interfaces (BMIs) enable people living with chronic paralysis to control computers, robots and more with nothing but thought. Existing BMIs have trade-offs across invasiveness, performance, spatial coverage and spatiotemporal resolution. Functional ultrasound (fUS) neuroimaging is an emerging technology that balances these attributes and may complement existing BMI recording technologies. In this study, we use fUS to demonstrate a successful implementation of a closed-loop ultrasonic BMI. We streamed fUS data from the posterior parietal cortex of two rhesus macaque monkeys while they performed eye and hand movements. After training, the monkeys controlled up to eight movement directions using the BMI. We also developed a method for pretraining the BMI using data from previous sessions. This enabled immediate control on subsequent days, even those that occurred months apart, without requiring extensive recalibration. These findings establish the feasibility of ultrasonic BMIs, paving the way for a new class of less-invasive (epidural) interfaces that generalize across extended time periods and promise to restore function to people with neurological impairments.
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Affiliation(s)
- Whitney S Griggs
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
- David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
| | - Sumner L Norman
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
| | - Thomas Deffieux
- Physics for Medicine Paris, INSERM, CNRS, ESPCI Paris, PSL Research University, Paris, France
- INSERM Technology Research Accelerator in Biomedical Ultrasound, Paris, France
| | - Florian Segura
- Physics for Medicine Paris, INSERM, CNRS, ESPCI Paris, PSL Research University, Paris, France
- INSERM Technology Research Accelerator in Biomedical Ultrasound, Paris, France
| | | | - Geeling Chau
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
| | - Vasileios Christopoulos
- T&C Chen Brain-Machine Interface Center, California Institute of Technology, Pasadena, CA, USA
- Department of Bioengineering, University of California, Riverside, Riverside, CA, USA
| | - Charles Liu
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- Department of Neurological Surgery, Keck School of Medicine of USC, Los Angeles, CA, USA
- USC Neurorestoration Center, Keck School of Medicine of USC, Los Angeles, CA, USA
- Rancho Los Amigos National Rehabilitation Center, Downey, CA, USA
| | - Mickael Tanter
- Physics for Medicine Paris, INSERM, CNRS, ESPCI Paris, PSL Research University, Paris, France
- INSERM Technology Research Accelerator in Biomedical Ultrasound, Paris, France
| | - Mikhail G Shapiro
- Division of Chemistry & Chemical Engineering, California Institute of Technology, Pasadena, CA, USA
- Andrew and Peggy Cherng Department of Medical Engineering, California Institute of Technology, Pasadena, CA, USA
- Howard Hughes Medical Institute, Pasadena, CA, USA
| | - Richard A Andersen
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- T&C Chen Brain-Machine Interface Center, California Institute of Technology, Pasadena, CA, USA
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56
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Abbaspourazad H, Erturk E, Pesaran B, Shanechi MM. Dynamical flexible inference of nonlinear latent factors and structures in neural population activity. Nat Biomed Eng 2024; 8:85-108. [PMID: 38082181 DOI: 10.1038/s41551-023-01106-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 09/12/2023] [Indexed: 12/26/2023]
Abstract
Modelling the spatiotemporal dynamics in the activity of neural populations while also enabling their flexible inference is hindered by the complexity and noisiness of neural observations. Here we show that the lower-dimensional nonlinear latent factors and latent structures can be computationally modelled in a manner that allows for flexible inference causally, non-causally and in the presence of missing neural observations. To enable flexible inference, we developed a neural network that separates the model into jointly trained manifold and dynamic latent factors such that nonlinearity is captured through the manifold factors and the dynamics can be modelled in tractable linear form on this nonlinear manifold. We show that the model, which we named 'DFINE' (for 'dynamical flexible inference for nonlinear embeddings') achieves flexible inference in simulations of nonlinear dynamics and across neural datasets representing a diversity of brain regions and behaviours. Compared with earlier neural-network models, DFINE enables flexible inference, better predicts neural activity and behaviour, and better captures the latent neural manifold structure. DFINE may advance the development of neurotechnology and investigations in neuroscience.
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Affiliation(s)
- Hamidreza Abbaspourazad
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
| | - Eray Erturk
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
| | - Bijan Pesaran
- Departments of Neurosurgery, Neuroscience, and Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Maryam M Shanechi
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.
- Thomas Lord Department of Computer Science, Alfred E. Mann Department of Biomedical Engineering, Neuroscience Graduate Program, University of Southern California, Los Angeles, CA, USA.
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57
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Paulk AC, Salami P, Zelmann R, Cash SS. Electrode Development for Epilepsy Diagnosis and Treatment. Neurosurg Clin N Am 2024; 35:135-149. [PMID: 38000837 DOI: 10.1016/j.nec.2023.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2023]
Abstract
Recording neural activity has been a critical aspect in the diagnosis and treatment of patients with epilepsy. For those with intractable epilepsy, intracranial neural monitoring has been of substantial importance. Clinically, however, methods for recording neural information have remained essentially unchanged for decades. Over the last decade or so, rapid advances in electrode technology have begun to change this landscape. New systems allow for the observation of neural activity with high spatial resolution and, in some cases, at the level of the activity of individual neurons. These new tools have contributed greatly to our understanding of brain function and dysfunction. Here, the authors review the primary technologies currently in use in humans. The authors discuss other possible systems, some of the challenges which come along with these devices, and how they will become incorporated into the clinical workflow. Ultimately, the expectation is that these new, high-density, high-spatial-resolution recording systems will become a valuable part of the clinical arsenal used in the diagnosis and surgical management of epilepsy.
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Affiliation(s)
- Angelique C Paulk
- Department of Neurology, Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, 55 Fruit Street, Boston, MA 02114, USA.
| | - Pariya Salami
- Department of Neurology, Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, 55 Fruit Street, Boston, MA 02114, USA
| | - Rina Zelmann
- Department of Neurology, Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, 55 Fruit Street, Boston, MA 02114, USA
| | - Sydney S Cash
- Department of Neurology, Center for Neurotechnology and Neurorecovery, Massachusetts General Hospital and Harvard Medical School, 55 Fruit Street, Boston, MA 02114, USA
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58
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Tao Q, Chao H, Fang D, Dou D. Progress in neurorehabilitation research and the support by the National Natural Science Foundation of China from 2010 to 2022. Neural Regen Res 2024; 19:226-232. [PMID: 37488871 PMCID: PMC10479845 DOI: 10.4103/1673-5374.375342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 03/27/2023] [Accepted: 04/14/2023] [Indexed: 07/26/2023] Open
Abstract
The National Natural Science Foundation of China is one of the major funding agencies for neurorehabilitation research in China. This study reviews the frontier directions and achievements in the field of neurorehabilitation in China and worldwide. We used data from the Web of Science Core Collection (WoSCC) database to analyze the publications and data provided by the National Natural Science Foundation of China to analyze funding information. In addition, the prospects for neurorehabilitation research in China are discussed. From 2010 to 2022, a total of 74,220 publications in neurorehabilitation were identified, with there being an overall upward tendency. During this period, the National Natural Science Foundation of China has funded 476 research projects with a total funding of 192.38 million RMB to support neurorehabilitation research in China. With the support of the National Natural Science Foundation of China, China has made some achievements in neurorehabilitation research. Research related to neurorehabilitation is believed to be making steady and significant progress in China.
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Affiliation(s)
- Qian Tao
- School of Medicine, Jinan University, Guangzhou, Guangdong Province, China
- School of Health and Life Science, University of Health and Rehabilitation Sciences, Qingdao, Shandong Province, China
- Department of Health Sciences, National Natural Science Foundation of China, Beijing, China
| | - Honglu Chao
- Department of Health Sciences, National Natural Science Foundation of China, Beijing, China
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu Province, China
| | - Dong Fang
- Department of Health Sciences, National Natural Science Foundation of China, Beijing, China
| | - Dou Dou
- Department of Health Sciences, National Natural Science Foundation of China, Beijing, China
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59
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Lin S, Jiang J, Huang K, Li L, He X, Du P, Wu Y, Liu J, Li X, Huang Z, Zhou Z, Yu Y, Gao J, Lei M, Wu H. Advanced Electrode Technologies for Noninvasive Brain-Computer Interfaces. ACS NANO 2023; 17:24487-24513. [PMID: 38064282 DOI: 10.1021/acsnano.3c06781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Brain-computer interfaces (BCIs) have garnered significant attention in recent years due to their potential applications in medical, assistive, and communication technologies. Building on this, noninvasive BCIs stand out as they provide a safe and user-friendly method for interacting with the human brain. In this work, we provide a comprehensive overview of the latest developments and advancements in material, design, and application of noninvasive BCIs electrode technology. We also explore the challenges and limitations currently faced by noninvasive BCI electrode technology and sketch out the technological roadmap from three dimensions: Materials and Design; Performances; Mode and Function. We aim to unite research efforts within the field of noninvasive BCI electrode technology, focusing on the consolidation of shared goals and fostering integrated development strategies among a diverse array of multidisciplinary researchers.
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Affiliation(s)
- Sen Lin
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Jingjing Jiang
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Kai Huang
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
- State Key Laboratory of Information Photonics and Optical Communications and School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Lei Li
- National Engineering Research Center of Electric Vehicles, Beijing Institute of Technology, Beijing 100081, China
| | - Xian He
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Peng Du
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Yufeng Wu
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Junchen Liu
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
- State Key Laboratory of Information Photonics and Optical Communications and School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Xilin Li
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
- Advanced Institute for Brain and Intelligence, Guangxi University, Nanning 530004, China
| | - Zhibao Huang
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Zenan Zhou
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Yuanhang Yu
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Jiaxin Gao
- School of Physical Science and Technology, Guangxi University, Nanning 530004, China
| | - Ming Lei
- State Key Laboratory of Information Photonics and Optical Communications and School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Hui Wu
- State Key Laboratory of New Ceramics and Fine Processing, School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
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60
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Zhang J, Li J, Huang Z, Huang D, Yu H, Li Z. Recent Progress in Wearable Brain-Computer Interface (BCI) Devices Based on Electroencephalogram (EEG) for Medical Applications: A Review. HEALTH DATA SCIENCE 2023; 3:0096. [PMID: 38487198 PMCID: PMC10880169 DOI: 10.34133/hds.0096] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 10/19/2023] [Indexed: 03/17/2024]
Abstract
Importance: Brain-computer interface (BCI) decodes and converts brain signals into machine instructions to interoperate with the external world. However, limited by the implantation risks of invasive BCIs and the operational complexity of conventional noninvasive BCIs, applications of BCIs are mainly used in laboratory or clinical environments, which are not conducive to the daily use of BCI devices. With the increasing demand for intelligent medical care, the development of wearable BCI systems is necessary. Highlights: Based on the scalp-electroencephalogram (EEG), forehead-EEG, and ear-EEG, the state-of-the-art wearable BCI devices for disease management and patient assistance are reviewed. This paper focuses on the EEG acquisition equipment of the novel wearable BCI devices and summarizes the development direction of wearable EEG-based BCI devices. Conclusions: BCI devices play an essential role in the medical field. This review briefly summarizes novel wearable EEG-based BCIs applied in the medical field and the latest progress in related technologies, emphasizing its potential to help doctors, patients, and caregivers better understand and utilize BCI devices.
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Affiliation(s)
- Jiayan Zhang
- Beijing Advanced Innovation Center for Integrated Circuits, Beijing, China
- National Key Laboratory of Advanced Micro and Nano Manufacture Technology, School of Integrated Circuits,
Peking University, Beijing, China
| | - Junshi Li
- Beijing Advanced Innovation Center for Integrated Circuits, Beijing, China
- National Key Laboratory of Advanced Micro and Nano Manufacture Technology, School of Integrated Circuits,
Peking University, Beijing, China
| | - Zhe Huang
- Beijing Advanced Innovation Center for Integrated Circuits, Beijing, China
- National Key Laboratory of Advanced Micro and Nano Manufacture Technology, School of Integrated Circuits,
Peking University, Beijing, China
- Shenzhen Graduate School,
Peking University, Shenzhen, China
| | - Dong Huang
- Beijing Advanced Innovation Center for Integrated Circuits, Beijing, China
- National Key Laboratory of Advanced Micro and Nano Manufacture Technology, School of Integrated Circuits,
Peking University, Beijing, China
- School of Electronics,
Peking University, Beijing, China
| | - Huaiqiang Yu
- Sichuan Institute of Piezoelectric and Acousto-optic Technology, Chongqing, China
| | - Zhihong Li
- Beijing Advanced Innovation Center for Integrated Circuits, Beijing, China
- National Key Laboratory of Advanced Micro and Nano Manufacture Technology, School of Integrated Circuits,
Peking University, Beijing, China
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61
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Boulingre M, Portillo-Lara R, Green RA. Biohybrid neural interfaces: improving the biological integration of neural implants. Chem Commun (Camb) 2023; 59:14745-14758. [PMID: 37991846 PMCID: PMC10720954 DOI: 10.1039/d3cc05006h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 11/10/2023] [Indexed: 11/24/2023]
Abstract
Implantable neural interfaces (NIs) have emerged in the clinic as outstanding tools for the management of a variety of neurological conditions caused by trauma or disease. However, the foreign body reaction triggered upon implantation remains one of the major challenges hindering the safety and longevity of NIs. The integration of tools and principles from biomaterial design and tissue engineering has been investigated as a promising strategy to develop NIs with enhanced functionality and performance. In this Feature Article, we highlight the main bioengineering approaches for the development of biohybrid NIs with an emphasis on relevant device design criteria. Technical and scientific challenges associated with the fabrication and functional assessment of technologies composed of both artificial and biological components are discussed. Lastly, we provide future perspectives related to engineering, regulatory, and neuroethical challenges to be addressed towards the realisation of the promise of biohybrid neurotechnology.
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Affiliation(s)
- Marjolaine Boulingre
- Department of Bioengineering, Imperial College London, South Kensington, London, SW7 2AZ, UK
| | - Roberto Portillo-Lara
- Department of Bioengineering, Imperial College London, South Kensington, London, SW7 2AZ, UK
| | - Rylie A Green
- Department of Bioengineering, Imperial College London, South Kensington, London, SW7 2AZ, UK
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62
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Csaky R, van Es MWJ, Jones OP, Woolrich M. Group-level brain decoding with deep learning. Hum Brain Mapp 2023; 44:6105-6119. [PMID: 37753636 PMCID: PMC10619368 DOI: 10.1002/hbm.26500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 07/11/2023] [Accepted: 09/11/2023] [Indexed: 09/28/2023] Open
Abstract
Decoding brain imaging data are gaining popularity, with applications in brain-computer interfaces and the study of neural representations. Decoding is typically subject-specific and does not generalise well over subjects, due to high amounts of between subject variability. Techniques that overcome this will not only provide richer neuroscientific insights but also make it possible for group-level models to outperform subject-specific models. Here, we propose a method that uses subject embedding, analogous to word embedding in natural language processing, to learn and exploit the structure in between-subject variability as part of a decoding model, our adaptation of the WaveNet architecture for classification. We apply this to magnetoencephalography data, where 15 subjects viewed 118 different images, with 30 examples per image; to classify images using the entire 1 s window following image presentation. We show that the combination of deep learning and subject embedding is crucial to closing the performance gap between subject- and group-level decoding models. Importantly, group models outperform subject models on low-accuracy subjects (although slightly impair high-accuracy subjects) and can be helpful for initialising subject models. While we have not generally found group-level models to perform better than subject-level models, the performance of group modelling is expected to be even higher with bigger datasets. In order to provide physiological interpretation at the group level, we make use of permutation feature importance. This provides insights into the spatiotemporal and spectral information encoded in the models. All code is available on GitHub (https://github.com/ricsinaruto/MEG-group-decode).
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Affiliation(s)
- Richard Csaky
- Oxford Centre for Human Brain Activity, Department of PsychiatryUniversity of OxfordOxfordUK
- Wellcome Centre for Integrative NeuroimagingOxfordUK
- Christ ChurchOxfordUK
| | - Mats W. J. van Es
- Oxford Centre for Human Brain Activity, Department of PsychiatryUniversity of OxfordOxfordUK
- Wellcome Centre for Integrative NeuroimagingOxfordUK
| | - Oiwi Parker Jones
- Wellcome Centre for Integrative NeuroimagingOxfordUK
- Jesus CollegeOxfordUK
- Department of Engineering ScienceUniversity of OxfordOxfordUK
| | - Mark Woolrich
- Oxford Centre for Human Brain Activity, Department of PsychiatryUniversity of OxfordOxfordUK
- Wellcome Centre for Integrative NeuroimagingOxfordUK
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63
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Fan C, Hahn N, Kamdar F, Avansino D, Wilson GH, Hochberg L, Shenoy KV, Henderson JM, Willett FR. Plug-and-Play Stability for Intracortical Brain-Computer Interfaces: A One-Year Demonstration of Seamless Brain-to-Text Communication. ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 2023; 36:42258-42270. [PMID: 38738213 PMCID: PMC11086983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
Intracortical brain-computer interfaces (iBCIs) have shown promise for restoring rapid communication to people with neurological disorders such as amyotrophic lateral sclerosis (ALS). However, to maintain high performance over time, iBCIs typically need frequent recalibration to combat changes in the neural recordings that accrue over days. This requires iBCI users to stop using the iBCI and engage in supervised data collection, making the iBCI system hard to use. In this paper, we propose a method that enables self-recalibration of communication iBCIs without interrupting the user. Our method leverages large language models (LMs) to automatically correct errors in iBCI outputs. The self-recalibration process uses these corrected outputs ("pseudo-labels") to continually update the iBCI decoder online. Over a period of more than one year (403 days), we evaluated our Continual Online Recalibration with Pseudo-labels (CORP) framework with one clinical trial participant. CORP achieved a stable decoding accuracy of 93.84% in an online handwriting iBCI task, significantly outperforming other baseline methods. Notably, this is the longest-running iBCI stability demonstration involving a human participant. Our results provide the first evidence for long-term stabilization of a plug-and-play, high-performance communication iBCI, addressing a major barrier for the clinical translation of iBCIs.
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Affiliation(s)
- Chaofei Fan
- Department of Computer Science, Stanford University
| | - Nick Hahn
- Department of Neurosurgery, Stanford University
| | | | | | | | - Leigh Hochberg
- School of Engineering and Carney Institute for Brain Science, Brown University
- VA RR&D Center for Neurorestoration and Neurotechnology, VA Providence Healthcare System
- Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital, Harvard Medical School
| | - Krishna V. Shenoy
- Bio-X Program, Stanford University
- Department of Neurobiology, Stanford University
- Department of Bioengineering, Stanford University
- Wu Tsai Neurosciences Institute, Stanford University
- Howard Hughes Medical Institute at Stanford University
- Department of Electrical Engineering, Stanford University
| | - Jaimie M. Henderson
- Department of Neurosurgery, Stanford University
- Wu Tsai Neurosciences Institute, Stanford University
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64
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Luo S, Angrick M, Coogan C, Candrea DN, Wyse‐Sookoo K, Shah S, Rabbani Q, Milsap GW, Weiss AR, Anderson WS, Tippett DC, Maragakis NJ, Clawson LL, Vansteensel MJ, Wester BA, Tenore FV, Hermansky H, Fifer MS, Ramsey NF, Crone NE. Stable Decoding from a Speech BCI Enables Control for an Individual with ALS without Recalibration for 3 Months. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2304853. [PMID: 37875404 PMCID: PMC10724434 DOI: 10.1002/advs.202304853] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 09/18/2023] [Indexed: 10/26/2023]
Abstract
Brain-computer interfaces (BCIs) can be used to control assistive devices by patients with neurological disorders like amyotrophic lateral sclerosis (ALS) that limit speech and movement. For assistive control, it is desirable for BCI systems to be accurate and reliable, preferably with minimal setup time. In this study, a participant with severe dysarthria due to ALS operates computer applications with six intuitive speech commands via a chronic electrocorticographic (ECoG) implant over the ventral sensorimotor cortex. Speech commands are accurately detected and decoded (median accuracy: 90.59%) throughout a 3-month study period without model retraining or recalibration. Use of the BCI does not require exogenous timing cues, enabling the participant to issue self-paced commands at will. These results demonstrate that a chronically implanted ECoG-based speech BCI can reliably control assistive devices over long time periods with only initial model training and calibration, supporting the feasibility of unassisted home use.
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Affiliation(s)
- Shiyu Luo
- Department of Biomedical EngineeringJohns Hopkins University School of MedicineBaltimoreMD21205USA
| | - Miguel Angrick
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - Christopher Coogan
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - Daniel N. Candrea
- Department of Biomedical EngineeringJohns Hopkins University School of MedicineBaltimoreMD21205USA
| | - Kimberley Wyse‐Sookoo
- Department of Biomedical EngineeringJohns Hopkins University School of MedicineBaltimoreMD21205USA
| | - Samyak Shah
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - Qinwan Rabbani
- Department of Electrical and Computer EngineeringJohns Hopkins UniversityBaltimoreMD21218USA
- Center for Language and Speech ProcessingJohns Hopkins UniversityBaltimoreMD21218USA
| | - Griffin W. Milsap
- Research and Exploratory Development DepartmentJohns Hopkins University Applied Physics LaboratoryLaurelMD20723USA
| | - Alexander R. Weiss
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - William S. Anderson
- Department of NeurosurgeryJohns Hopkins University School of MedicineBaltimoreMD21205USA
| | - Donna C. Tippett
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
- Department of Otolaryngology‐Head and Neck SurgeryJohns Hopkins University School of MedicineBaltimoreMD21205USA
- Department of Physical Medicine and RehabilitationJohns Hopkins University School of MedicineBaltimoreMD21205USA
| | - Nicholas J. Maragakis
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - Lora L. Clawson
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
| | - Mariska J. Vansteensel
- Department of Neurology and NeurosurgeryUMC Utrecht Brain CenterUtrecht3584The Netherlands
| | - Brock A. Wester
- Research and Exploratory Development DepartmentJohns Hopkins University Applied Physics LaboratoryLaurelMD20723USA
| | - Francesco V. Tenore
- Research and Exploratory Development DepartmentJohns Hopkins University Applied Physics LaboratoryLaurelMD20723USA
| | - Hynek Hermansky
- Department of Electrical and Computer EngineeringJohns Hopkins UniversityBaltimoreMD21218USA
- Center for Language and Speech ProcessingJohns Hopkins UniversityBaltimoreMD21218USA
| | - Matthew S. Fifer
- Research and Exploratory Development DepartmentJohns Hopkins University Applied Physics LaboratoryLaurelMD20723USA
| | - Nick F. Ramsey
- Department of Neurology and NeurosurgeryUMC Utrecht Brain CenterUtrecht3584The Netherlands
| | - Nathan E. Crone
- Department of NeurologyJohns Hopkins University School of MedicineBaltimoreMD21287USA
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65
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Hernandez-Reynoso AG, Sturgill BS, Hoeferlin GF, Druschel LN, Krebs OK, Menendez DM, Thai TTD, Smith TJ, Duncan J, Zhang J, Mittal G, Radhakrishna R, Desai MS, Cogan SF, Pancrazio JJ, Capadona JR. The effect of a Mn(III)tetrakis(4-benzoic acid)porphyrin (MnTBAP) coating on the chronic recording performance of planar silicon intracortical microelectrode arrays. Biomaterials 2023; 303:122351. [PMID: 37931456 PMCID: PMC10842897 DOI: 10.1016/j.biomaterials.2023.122351] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/27/2023] [Accepted: 10/11/2023] [Indexed: 11/08/2023]
Abstract
Intracortical microelectrode arrays (MEAs) are used to record neural activity. However, their implantation initiates a neuroinflammatory cascade, involving the accumulation of reactive oxygen species, leading to interface failure. Here, we coated commercially-available MEAs with Mn(III)tetrakis(4-benzoic acid)porphyrin (MnTBAP), to mitigate oxidative stress. First, we assessed the in vitro cytotoxicity of modified sample substrates. Then, we implanted 36 rats with uncoated, MnTBAP-coated ("Coated"), or (3-Aminopropyl)triethoxysilane (APTES)-coated devices - an intermediate step in the coating process. We assessed electrode performance during the acute (1-5 weeks), sub-chronic (6-11 weeks), and chronic (12-16 weeks) phases after implantation. Three subsets of animals were euthanized at different time points to assess the acute, sub-chronic and chronic immunohistological responses. Results showed that MnTBAP coatings were not cytotoxic in vitro, and their implantation in vivo improved the proportion of electrodes during the sub-chronic and chronic phases; APTES coatings resulted in failure of the neural interface during the chronic phase. In addition, MnTBAP coatings improved the quality of the signal throughout the study and reduced the neuroinflammatory response around the implant as early as two weeks, an effect that remained consistent for months post-implantation. Together, these results suggest that MnTBAP coatings are a potentially useful modification to improve MEA reliability.
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Affiliation(s)
- Ana G Hernandez-Reynoso
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Brandon S Sturgill
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - George F Hoeferlin
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Lindsey N Druschel
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Olivia K Krebs
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Dhariyat M Menendez
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Teresa T D Thai
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Thomas J Smith
- School of Behavioral and Brain Sciences, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Jonathan Duncan
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Jichu Zhang
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Gaurav Mittal
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
| | - Rahul Radhakrishna
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Mrudang Spandan Desai
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Stuart F Cogan
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Joseph J Pancrazio
- Department of Bioengineering, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX, 75080, United States.
| | - Jeffrey R Capadona
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, OH, 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, 10701 East Blvd, Cleveland, OH, 44106, United States.
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66
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Merino EC, Faes A, Van Hulle MM. The role of distinct ECoG frequency features in decoding finger movement. J Neural Eng 2023; 20:066014. [PMID: 37963397 DOI: 10.1088/1741-2552/ad0c5e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 11/14/2023] [Indexed: 11/16/2023]
Abstract
Objective.To identify the electrocorticography (ECoG) frequency features that encode distinct finger movement states during repeated finger flexions.Approach.We used the publicly available Stanford ECoG dataset of cue-based, repeated single finger flexions. Using linear regression, we identified the spectral features that contributed most to the encoding of movement dynamics and discriminating movement events from rest, and combined them to predict finger movement trajectories. Furthermore, we also looked into the effect of the used frequency range and the spatial distribution of the identified features.Main results.Two frequency features generate superior performance, each one for a different movement aspect: high gamma band activity distinguishes movement events from rest, whereas the local motor potential (LMP) codes for movement dynamics. Combining these two features in a finger movement decoder outperformed comparable prior work where the entire spectrum was used as the average correlation coefficient with the true trajectories increased from 0.45 to 0.5, both applied to the Stanford dataset, and erroneous predictions during rest were demoted. In addition, for the first time, our results show the influence of the upper cut-off frequency used to extract LMP, yielding a higher performance when this range is adjusted to the finger movement rate.Significance.This study shows the benefit of a detailed feature analysis prior to designing the finger movement decoder.
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Affiliation(s)
- Eva Calvo Merino
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven, Belgium
| | - A Faes
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven, Belgium
| | - M M Van Hulle
- Laboratory for Neuro- and Psychophysiology, KU Leuven, Leuven, Belgium
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67
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Canny E, Vansteensel MJ, van der Salm SMA, Müller-Putz GR, Berezutskaya J. Boosting brain-computer interfaces with functional electrical stimulation: potential applications in people with locked-in syndrome. J Neuroeng Rehabil 2023; 20:157. [PMID: 37980536 PMCID: PMC10656959 DOI: 10.1186/s12984-023-01272-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/23/2023] [Indexed: 11/20/2023] Open
Abstract
Individuals with a locked-in state live with severe whole-body paralysis that limits their ability to communicate with family and loved ones. Recent advances in brain-computer interface (BCI) technology have presented a potential alternative for these people to communicate by detecting neural activity associated with attempted hand or speech movements and translating the decoded intended movements to a control signal for a computer. A technique that could potentially enrich the communication capacity of BCIs is functional electrical stimulation (FES) of paralyzed limbs and face to restore body and facial movements of paralyzed individuals, allowing to add body language and facial expression to communication BCI utterances. Here, we review the current state of the art of existing BCI and FES work in people with paralysis of body and face and propose that a combined BCI-FES approach, which has already proved successful in several applications in stroke and spinal cord injury, can provide a novel promising mode of communication for locked-in individuals.
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Affiliation(s)
- Evan Canny
- Department of Neurology and Neurosurgery, Brain Center, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Mariska J Vansteensel
- Department of Neurology and Neurosurgery, Brain Center, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Sandra M A van der Salm
- Department of Neurology and Neurosurgery, Brain Center, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Gernot R Müller-Putz
- Institute of Neural Engineering, Laboratory of Brain-Computer Interfaces, Graz University of Technology, Graz, Austria
| | - Julia Berezutskaya
- Department of Neurology and Neurosurgery, Brain Center, University Medical Center Utrecht, Utrecht, The Netherlands.
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68
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Sanda R, Yamashita K, Sawahata H, Sakamoto K, Yamagiwa S, Yokoyama S, Numano R, Koida K, Kawano T. Low-invasive neural recording in mouse models with diabetes via an ultrasmall needle-electrode. Biosens Bioelectron 2023; 240:115605. [PMID: 37669586 DOI: 10.1016/j.bios.2023.115605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 08/11/2023] [Accepted: 08/14/2023] [Indexed: 09/07/2023]
Abstract
Diabetes is known to cause a variety of complications, having a high correlation with Alzheimer's disease. Electrophysiological recording using a microscale needle electrode is a promising technology for the study, however, diabetic brain tissue is more difficult to record neuronal activities than normal tissue due to these complications including the development of cerebrovascular disease. Here we show an electrophysiological methodology for diabetic db/db mice (+Leprdb/+Leprdb) using a 4-μm-tip diameter needle-electrode device. The needle electrode minimized the tissue injury when compared to a typical larger metal electrode, as confirmed by bleeding during penetration. The proposed electrode device showed both acute and chronic in vivo recording capabilities for diabetic mice while reducing the glial cells' responses. Because of these device characteristics, the 4-μm-tip diameter needle-electrode will allow electrophysiological studies on diabetes models of not only mice, as proven in this study, but also other animals.
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Affiliation(s)
- Rioki Sanda
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Koji Yamashita
- Electronics-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Hirohito Sawahata
- National Institute of Technology, Ibaraki College, 866 Nakane, Hitachinaka, 312-8508, Japan
| | - Kensei Sakamoto
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Shota Yamagiwa
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Shohei Yokoyama
- TechnoPro, Inc., TechnoPro R&D Company, 6-10-1 Roppongi, Minato-ku, 106-6135, Japan
| | - Rika Numano
- Electronics-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan; Department of Applied Chemistry and Life Science, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Kowa Koida
- Electronics-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan; Department of Computer Science and Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan
| | - Takeshi Kawano
- Department of Electrical and Electronic Information Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan; Electronics-Interdisciplinary Research Institute (EIIRIS), Toyohashi University of Technology, 1-1 Hibarigaoka Tempaku-cho, Toyohashi, 441-8580, Japan.
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69
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Okatan M, Kocatürk M. Decoding the Spike-Band Subthreshold Motor Cortical Activity. J Mot Behav 2023; 56:161-183. [PMID: 37964432 DOI: 10.1080/00222895.2023.2280263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Accepted: 10/25/2023] [Indexed: 11/16/2023]
Abstract
Intracortical Brain-Computer Interfaces (iBCI) use single-unit activity (SUA), multiunit activity (MUA) and local field potentials (LFP) to control neuroprosthetic devices. SUA and MUA are usually extracted from the bandpassed recording through amplitude thresholding, while subthreshold data are ignored. Here, we show that subthreshold data can actually be decoded to determine behavioral variables with test set accuracy of up to 100%. Although the utility of SUA, MUA and LFP for decoding behavioral variables has been explored previously, this study investigates the utility of spike-band subthreshold activity exclusively. We provide evidence suggesting that this activity can be used to keep decoding performance at acceptable levels even when SUA quality is reduced over time. To the best of our knowledge, the signals that we derive from the subthreshold activity may be the weakest neural signals that have ever been extracted from extracellular neural recordings, while still being decodable with test set accuracy of up to 100%. These results are relevant for the development of fully data-driven and automated methods for amplitude thresholding spike-band extracellular neural recordings in iBCIs containing thousands of electrodes.
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Affiliation(s)
- Murat Okatan
- Informatics Institute, Istanbul Technical University, Istanbul, Türkiye
- Artificial Intelligence and Data Engineering Department, Istanbul Technical University, Istanbul, Türkiye
| | - Mehmet Kocatürk
- Biomedical Engineering Department, Istanbul Medipol University, Istanbul, Türkiye
- Research Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Türkiye
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70
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Coulter ME, Kemere C. The neural basis of mental navigation in rats. Science 2023; 382:517-518. [PMID: 37917674 DOI: 10.1126/science.adl0806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
A brain-machine interface demonstrates volitional control of hippocampal activity.
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71
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Lai C, Tanaka S, Harris TD, Lee AK. Volitional activation of remote place representations with a hippocampal brain-machine interface. Science 2023; 382:566-573. [PMID: 37917713 PMCID: PMC10683874 DOI: 10.1126/science.adh5206] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 09/22/2023] [Indexed: 11/04/2023]
Abstract
The hippocampus is critical for recollecting and imagining experiences. This is believed to involve voluntarily drawing from hippocampal memory representations of people, events, and places, including maplike representations of familiar environments. However, whether representations in such "cognitive maps" can be volitionally accessed is unknown. We developed a brain-machine interface to test whether rats can do so by controlling their hippocampal activity in a flexible, goal-directed, and model-based manner. We found that rats can efficiently navigate or direct objects to arbitrary goal locations within a virtual reality arena solely by activating and sustaining appropriate hippocampal representations of remote places. This provides insight into the mechanisms underlying episodic memory recall, mental simulation and planning, and imagination and opens up possibilities for high-level neural prosthetics that use hippocampal representations.
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Affiliation(s)
- Chongxi Lai
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Shinsuke Tanaka
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Timothy D. Harris
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Albert K. Lee
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
- Howard Hughes Medical Institute and Department of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA
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72
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Rizzoglio F, Altan E, Ma X, Bodkin KL, Dekleva BM, Solla SA, Kennedy A, Miller LE. From monkeys to humans: observation-basedEMGbrain-computer interface decoders for humans with paralysis. J Neural Eng 2023; 20:056040. [PMID: 37844567 PMCID: PMC10618714 DOI: 10.1088/1741-2552/ad038e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 10/02/2023] [Accepted: 10/16/2023] [Indexed: 10/18/2023]
Abstract
Objective. Intracortical brain-computer interfaces (iBCIs) aim to enable individuals with paralysis to control the movement of virtual limbs and robotic arms. Because patients' paralysis prevents training a direct neural activity to limb movement decoder, most iBCIs rely on 'observation-based' decoding in which the patient watches a moving cursor while mentally envisioning making the movement. However, this reliance on observed target motion for decoder development precludes its application to the prediction of unobservable motor output like muscle activity. Here, we ask whether recordings of muscle activity from a surrogate individual performing the same movement as the iBCI patient can be used as target for an iBCI decoder.Approach. We test two possible approaches, each using data from a human iBCI user and a monkey, both performing similar motor actions. In one approach, we trained a decoder to predict the electromyographic (EMG) activity of a monkey from neural signals recorded from a human. We then contrast this to a second approach, based on the hypothesis that the low-dimensional 'latent' neural representations of motor behavior, known to be preserved across time for a given behavior, might also be preserved across individuals. We 'transferred' an EMG decoder trained solely on monkey data to the human iBCI user after using Canonical Correlation Analysis to align the human latent signals to those of the monkey.Main results. We found that both direct and transfer decoding approaches allowed accurate EMG predictions between two monkeys and from a monkey to a human.Significance. Our findings suggest that these latent representations of behavior are consistent across animals and even primate species. These methods are an important initial step in the development of iBCI decoders that generate EMG predictions that could serve as signals for a biomimetic decoder controlling motion and impedance of a prosthetic arm, or even muscle force directly through functional electrical stimulation.
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Affiliation(s)
- Fabio Rizzoglio
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
| | - Ege Altan
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America
| | - Xuan Ma
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
| | - Kevin L Bodkin
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
| | - Brian M Dekleva
- Rehab Neural Engineering Labs, Department of Physical Medicine and Rehabilitation, University of Pittsburgh, Pittsburgh, PA, United States of America
| | - Sara A Solla
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
- Department of Physics and Astronomy, Northwestern University, Evanston, IL, United States of America
| | - Ann Kennedy
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
| | - Lee E Miller
- Department of Neuroscience, Northwestern University, Chicago, IL, United States of America
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America
- Shirley Ryan AbilityLab, Chicago, IL, United States of America
- Department of Physical Medicine and Rehabilitation, Northwestern University, Chicago, IL, United States of America
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73
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Tian Y, Yin J, Wang C, He Z, Xie J, Feng X, Zhou Y, Ma T, Xie Y, Li X, Yang T, Ren C, Li C, Zhao Z. An Ultraflexible Electrode Array for Large-Scale Chronic Recording in the Nonhuman Primate Brain. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2302333. [PMID: 37870175 PMCID: PMC10667845 DOI: 10.1002/advs.202302333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 09/08/2023] [Indexed: 10/24/2023]
Abstract
Single-unit (SU) recording in nonhuman primates (NHPs) is indispensible in the quest of how the brain works, yet electrodes currently used for the NHP brain are limited in signal longevity, stability, and spatial coverage. Using new structural materials, microfabrication, and penetration techniques, we develop a mechanically robust ultraflexible, 1 µm thin electrode array (MERF) that enables pial penetration and high-density, large-scale, and chronic recording of neurons along both vertical and horizontal cortical axes in the nonhuman primate brain. Recording from three monkeys yields 2,913 SUs from 1,065 functional recording channels (up to 240 days), with some SUs tracked for up to 2 months. Recording from the primary visual cortex (V1) reveals that neurons with similar orientation preferences for visual stimuli exhibited higher spike correlation. Furthermore, simultaneously recorded neurons in different cortical layers of the primary motor cortex (M1) show preferential firing for hand movements of different directions. Finally, it is shown that a linear decoder trained with neuronal spiking activity across M1 layers during monkey's hand movements can be used to achieve on-line control of cursor movement. Thus, the MERF electrode array offers a new tool for basic neuroscience studies and brain-machine interface (BMI) applications in the primate brain.
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Affiliation(s)
- Yixin Tian
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Jiapeng Yin
- Shanghai Center for Brain Science and Brain‐Inspired TechnologyShanghai201602China
- Lingang LaboratoryShanghai200031China
| | - Chengyao Wang
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Zhenliang He
- Lingang LaboratoryShanghai200031China
- Institute of NeuroscienceState Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Jingyi Xie
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
| | - Xiaoshan Feng
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Yang Zhou
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Tianyu Ma
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
| | - Yang Xie
- Lingang LaboratoryShanghai200031China
- Institute of NeuroscienceKey Laboratory of Primate Neurobiology, Center for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Xue Li
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Tianming Yang
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
| | - Chi Ren
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Chengyu Li
- Lingang LaboratoryShanghai200031China
- Institute of NeuroscienceState Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
| | - Zhengtuo Zhao
- Institute of NeuroscienceCenter for Excellence in Brain Science and Intelligence TechnologyChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
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Wang J, Wang T, Liu H, Wang K, Moses K, Feng Z, Li P, Huang W. Flexible Electrodes for Brain-Computer Interface System. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2211012. [PMID: 37143288 DOI: 10.1002/adma.202211012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 04/27/2023] [Indexed: 05/06/2023]
Abstract
Brain-computer interface (BCI) has been the subject of extensive research recently. Governments and companies have substantially invested in relevant research and applications. The restoration of communication and motor function, the treatment of psychological disorders, gaming, and other daily and therapeutic applications all benefit from BCI. The electrodes hold the key to the essential, fundamental BCI precondition of electrical brain activity detection and delivery. However, the traditional rigid electrodes are limited due to their mismatch in Young's modulus, potential damages to the human body, and a decline in signal quality with time. These factors make the development of flexible electrodes vital and urgent. Flexible electrodes made of soft materials have grown in popularity in recent years as an alternative to conventional rigid electrodes because they offer greater conformance, the potential for higher signal-to-noise ratio (SNR) signals, and a wider range of applications. Therefore, the latest classifications and future developmental directions of fabricating these flexible electrodes are explored in this paper to further encourage the speedy advent of flexible electrodes for BCI. In summary, the perspectives and future outlook for this developing discipline are provided.
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Affiliation(s)
- Junjie Wang
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Tengjiao Wang
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Haoyan Liu
- Department of Computer Science & Computer Engineering (CSCE), University of Arkansas, Fayetteville, AR, 72701, USA
| | - Kun Wang
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Kumi Moses
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Zhuoya Feng
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Peng Li
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
| | - Wei Huang
- Frontiers Science Center for Flexible Electronics (FSCFE), Xi'an Institute of Flexible Electronics (IFE) & Xi'an Institute of Biomedical Materials and Engineering (IBME), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, Shaanxi, 710072, P. R. China
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Perna A, Angotzi GN, Berdondini L, Ribeiro JF. Advancing the interfacing performances of chronically implantable neural probes in the era of CMOS neuroelectronics. Front Neurosci 2023; 17:1275908. [PMID: 38027514 PMCID: PMC10644322 DOI: 10.3389/fnins.2023.1275908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 10/10/2023] [Indexed: 12/01/2023] Open
Abstract
Tissue penetrating microelectrode neural probes can record electrophysiological brain signals at resolutions down to single neurons, making them invaluable tools for neuroscience research and Brain-Computer-Interfaces (BCIs). The known gradual decrease of their electrical interfacing performances in chronic settings, however, remains a major challenge. A key factor leading to such decay is Foreign Body Reaction (FBR), which is the cascade of biological responses that occurs in the brain in the presence of a tissue damaging artificial device. Interestingly, the recent adoption of Complementary Metal Oxide Semiconductor (CMOS) technology to realize implantable neural probes capable of monitoring hundreds to thousands of neurons simultaneously, may open new opportunities to face the FBR challenge. Indeed, this shift from passive Micro Electro-Mechanical Systems (MEMS) to active CMOS neural probe technologies creates important, yet unexplored, opportunities to tune probe features such as the mechanical properties of the probe, its layout, size, and surface physicochemical properties, to minimize tissue damage and consequently FBR. Here, we will first review relevant literature on FBR to provide a better understanding of the processes and sources underlying this tissue response. Methods to assess FBR will be described, including conventional approaches based on the imaging of biomarkers, and more recent transcriptomics technologies. Then, we will consider emerging opportunities offered by the features of CMOS probes. Finally, we will describe a prototypical neural probe that may meet the needs for advancing clinical BCIs, and we propose axial insertion force as a potential metric to assess the influence of probe features on acute tissue damage and to control the implantation procedure to minimize iatrogenic injury and subsequent FBR.
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Affiliation(s)
- Alberto Perna
- Microtechnology for Neuroelectronics Lab, Fondazione Istituto Italiano di Tecnologia, Neuroscience and Brain Technologies, Genova, Italy
- The Open University Affiliated Research Centre at Istituto Italiano di Tecnologia (ARC@IIT), Istituto Italiano di Tecnologia, Genova, Italy
| | - Gian Nicola Angotzi
- Microtechnology for Neuroelectronics Lab, Fondazione Istituto Italiano di Tecnologia, Neuroscience and Brain Technologies, Genova, Italy
| | - Luca Berdondini
- Microtechnology for Neuroelectronics Lab, Fondazione Istituto Italiano di Tecnologia, Neuroscience and Brain Technologies, Genova, Italy
| | - João Filipe Ribeiro
- Microtechnology for Neuroelectronics Lab, Fondazione Istituto Italiano di Tecnologia, Neuroscience and Brain Technologies, Genova, Italy
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Sankaran N, Moses D, Chiong W, Chang EF. Recommendations for promoting user agency in the design of speech neuroprostheses. Front Hum Neurosci 2023; 17:1298129. [PMID: 37920562 PMCID: PMC10619159 DOI: 10.3389/fnhum.2023.1298129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 10/04/2023] [Indexed: 11/04/2023] Open
Abstract
Brain-computer interfaces (BCI) that directly decode speech from brain activity aim to restore communication in people with paralysis who cannot speak. Despite recent advances, neural inference of speech remains imperfect, limiting the ability for speech BCIs to enable experiences such as fluent conversation that promote agency - that is, the ability for users to author and transmit messages enacting their intentions. Here, we make recommendations for promoting agency based on existing and emerging strategies in neural engineering. The focus is on achieving fast, accurate, and reliable performance while ensuring volitional control over when a decoder is engaged, what exactly is decoded, and how messages are expressed. Additionally, alongside neuroscientific progress within controlled experimental settings, we argue that a parallel line of research must consider how to translate experimental successes into real-world environments. While such research will ultimately require input from prospective users, here we identify and describe design choices inspired by human-factors work conducted in existing fields of assistive technology, which address practical issues likely to emerge in future real-world speech BCI applications.
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Affiliation(s)
- Narayan Sankaran
- Kavli Center for Ethics, Science and the Public, University of California, Berkeley, Berkeley, CA, United States
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States
- Weill Institute for Neuroscience, University of California, San Francisco, San Francisco, CA, United States
| | - David Moses
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States
- Weill Institute for Neuroscience, University of California, San Francisco, San Francisco, CA, United States
| | - Winston Chiong
- Memory and Aging Center, Department of Neurology, University of California, San Francisco, San Francisco, CA, United States
| | - Edward F. Chang
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States
- Weill Institute for Neuroscience, University of California, San Francisco, San Francisco, CA, United States
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77
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Tan J, Zhang X, Wu S, Song Z, Chen S, Huang Y, Wang Y. Audio-induced medial prefrontal cortical dynamics enhances coadaptive learning in brain-machine interfaces. J Neural Eng 2023; 20:056035. [PMID: 37812934 DOI: 10.1088/1741-2552/ad017d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 10/09/2023] [Indexed: 10/11/2023]
Abstract
Objectives. Coadaptive brain-machine interfaces (BMIs) allow subjects and external devices to adapt to each other during the closed-loop control, which provides a promising solution for paralyzed individuals. Previous studies have focused on either improving sensory feedback to facilitate subject learning or developing adaptive algorithms to maintain stable decoder performance. In this work, we aim to design an efficient coadaptive BMI framework which not only facilitates the learning of subjects on new tasks with designed sensory feedback, but also improves decoders' learning ability by extracting sensory feedback-induced evaluation information.Approach. We designed dynamic audio feedback during the trial according to the subjects' performance when they were trained to learn a new behavioral task. We compared the learning performance of two groups of Sprague Dawley rats, one with and the other without the designed audio feedback to show whether this audio feedback could facilitate the subjects' learning. Compared with the traditional closed-loop in BMI systems, an additional closed-loop involving medial prefrontal cortex (mPFC) activity was introduced into the coadaptive framework. The neural dynamics of audio-induced mPFC activity was analyzed to investigate whether a significant neural response could be triggered. This audio-induced response was then translated into reward expectation information to guide the learning of decoders on a new task. The multiday decoding performance of the decoders with and without audio-induced reward expectation was compared to investigate whether the extracted information could accelerate decoders to learn a new task.Main results. The behavior performance comparison showed that the average days for rats to achieve 80% well-trained behavioral performance was improved by 26.4% after introducing the designed audio feedback sequence. The analysis of neural dynamics showed that a significant neural response of mPFC activity could be elicited by the audio feedback and the visualization of audio-induced neural patterns was emerged and accompanied by the behavioral improvement of subjects. The multiday decoding performance comparison showed that the decoder taking the reward expectation information could achieve faster task learning by 33.8% on average across subjects.Significance. This study demonstrates that the designed audio feedback could improve the learning of subjects and the mPFC activity induced by audio feedback can be utilized to improve the decoder's learning efficiency on new tasks. The coadaptive framework involving mPFC dynamics in the closed-loop interaction can advance the BMIs into a more adaptive and efficient system with learning ability on new tasks.
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Affiliation(s)
- Jieyuan Tan
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Xiang Zhang
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Shenghui Wu
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Zhiwei Song
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Shuhang Chen
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Yifan Huang
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
| | - Yiwen Wang
- Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
- Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region of China, People's Republic of China
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78
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Feng X, Feng X, Qin B, Liu T. Aligning Semantic in Brain and Language: A Curriculum Contrastive Method for Electroencephalography-to-Text Generation. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3874-3883. [PMID: 37698960 DOI: 10.1109/tnsre.2023.3314642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
Abstract
Electroencephalography-to-Text generation (EEG-to-Text), which aims to directly generate natural text from EEG signals has drawn increasing attention in recent years due to the enormous potential for Brain-computer interfaces. However, the remarkable discrepancy between the subject-dependent EEG representation and the semantic-dependent text representation poses a great challenge to this task. To mitigate this, we devise a Curriculum Semantic-aware Contrastive Learning strategy (C- SCL), which effectively recalibrates the subject-dependent EEG representation to the semantic-dependent EEG representation, thereby reducing the discrepancy. Specifically, our C- SCL pulls semantically similar EEG representations together while pushing apart dissimilar ones. Besides, in order to introduce more meaningful contrastive pairs, we carefully employ curriculum learning to not only craft meaningful contrastive pairs but also make the learning progressively. We conduct extensive experiments on the ZuCo benchmark and our method combined with diverse models and architectures shows stable improvements across three types of metrics while achieving the new state-of-the-art. Further investigation proves not only its superiority in both the single-subject and low-resource settings but also its robust generalizability in the zero-shot setting. Our codes are available at: https://github.com/xcfcode/contrastive_eeg2text.
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79
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Garwood IC, Major AJ, Antonini MJ, Correa J, Lee Y, Sahasrabudhe A, Mahnke MK, Miller EK, Brown EN, Anikeeva P. Multifunctional fibers enable modulation of cortical and deep brain activity during cognitive behavior in macaques. SCIENCE ADVANCES 2023; 9:eadh0974. [PMID: 37801492 PMCID: PMC10558126 DOI: 10.1126/sciadv.adh0974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 09/05/2023] [Indexed: 10/08/2023]
Abstract
Recording and modulating neural activity in vivo enables investigations of the neurophysiology underlying behavior and disease. However, there is a dearth of translational tools for simultaneous recording and localized receptor-specific modulation. We address this limitation by translating multifunctional fiber neurotechnology previously only available for rodent studies to enable cortical and subcortical neural recording and modulation in macaques. We record single-neuron and broader oscillatory activity during intracranial GABA infusions in the premotor cortex and putamen. By applying state-space models to characterize changes in electrophysiology, we uncover that neural activity evoked by a working memory task is reshaped by even a modest local inhibition. The recordings provide detailed insight into the electrophysiological effect of neurotransmitter receptor modulation in both cortical and subcortical structures in an awake macaque. Our results demonstrate a first-time application of multifunctional fibers for causal studies of neuronal activity in behaving nonhuman primates and pave the way for clinical translation of fiber-based neurotechnology.
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Affiliation(s)
- Indie C. Garwood
- Harvard-MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Alex J. Major
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Marc-Joseph Antonini
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Josefina Correa
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Youngbin Lee
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Atharva Sahasrabudhe
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Meredith K. Mahnke
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Earl K. Miller
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Emery N. Brown
- Harvard-MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA
- The Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Anesthesia, Critical Care, and Pain Medicine, Massachusetts General Hospital, Boston, MA, USA
- Institute for Medical Engineering and Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Anaesthesia, Harvard Medical School, Boston, MA, USA
| | - Polina Anikeeva
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
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80
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Song S, Druschel LN, Chan ER, Capadona JR. Differential expression of genes involved in the chronic response to intracortical microelectrodes. Acta Biomater 2023; 169:348-362. [PMID: 37507031 PMCID: PMC10528922 DOI: 10.1016/j.actbio.2023.07.038] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 07/13/2023] [Accepted: 07/23/2023] [Indexed: 07/30/2023]
Abstract
Brain-Machine Interface systems (BMIs) are clinically valuable devices that can provide functional restoration for patients with spinal cord injury or improved integration for patients requiring prostheses. Intracortical microelectrodes can record neuronal action potentials at a resolution necessary for precisely controlling BMIs. However, intracortical microelectrodes have a demonstrated history of progressive decline in the recording performance with time, inhibiting their usefulness. One major contributor to decreased performance is the neuroinflammatory response to the implanted microelectrodes. The neuroinflammatory response can lead to neurodegeneration and the formation of a glial scar at the implant site. Historically, histological imaging of relatively few known cellular and protein markers has characterized the neuroinflammatory response to implanted microelectrode arrays. However, neuroinflammation requires many molecular players to coordinate the response - meaning traditional methods could result in an incomplete understanding. Taking advantage of recent advancements in tools to characterize the relative or absolute DNA/RNA expression levels, a few groups have begun to explore gene expression at the microelectrode-tissue interface. We have utilized a custom panel of ∼813 neuroinflammatory-specific genes developed with NanoString for bulk tissue analysis at the microelectrode-tissue interface. Our previous studies characterized the acute innate immune response to intracortical microelectrodes. Here we investigated the gene expression at the microelectrode-tissue interface in wild-type (WT) mice chronically implanted with nonfunctioning probes. We found 28 differentially expressed genes at chronic time points (4WK, 8WK, and 16WK), many in the complement and extracellular matrix system. Further, the expression levels were relatively stable over time. Genes identified here represent chronic molecular players at the microelectrode implant sites and potential therapeutic targets for the long-term integration of microelectrodes. STATEMENT OF SIGNIFICANCE: Intracortical microelectrodes can record neuronal action potentials at a resolution necessary for the precise control of Brain-Machine Interface systems (BMIs). However, intracortical microelectrodes have a demonstrated history of progressive declines in the recording performance with time, inhibiting their usefulness. One major contributor to the decline in these devices is the neuroinflammatory response against the implanted microelectrodes. Historically, neuroinflammation to implanted microelectrode arrays has been characterized by histological imaging of relatively few known cellular and protein markers. Few studies have begun to develop a more in-depth understanding of the molecular pathways facilitating device-mediated neuroinflammation. Here, we are among the first to identify genetic pathways that could represent targets to improve the host response to intracortical microelectrodes, and ultimately device performance.
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Affiliation(s)
- Sydney Song
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, OH 44106, United States
| | - Lindsey N Druschel
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, OH 44106, United States
| | - E Ricky Chan
- Cleveland Institute for Computational Biology, Case Western Reserve University, Cleveland, OH 44106, United States
| | - Jeffrey R Capadona
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH 44106, United States; Advanced Platform Technology Center, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, OH 44106, United States.
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81
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Yuste R. Advocating for neurodata privacy and neurotechnology regulation. Nat Protoc 2023; 18:2869-2875. [PMID: 37697107 DOI: 10.1038/s41596-023-00873-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 07/27/2023] [Indexed: 09/13/2023]
Abstract
The ability to record and alter brain activity by using implantable and nonimplantable neural devices, while poised to have significant scientific and clinical benefits, also raises complex ethical concerns. In this Perspective, we raise awareness of the ability of artificial intelligence algorithms and data-aggregation tools to decode and analyze data containing highly sensitive information, jeopardizing personal neuroprivacy. Voids in existing regulatory frameworks, in fact, allow unrestricted decoding and commerce of neurodata. We advocate for the implementation of proposed ethical and human rights guidelines, alongside technical options such as data encryption, differential privacy and federated learning to ensure the protection of neurodata privacy. We further encourage regulatory bodies to consider taking a position of responsibility by categorizing all brain-derived data as sensitive health data and apply existing medical regulations to all data gathered via pre-registered neural devices. Lastly, we propose that a technocratic oath may instill a deontology for neurotechnology practitioners akin to what the Hippocratic oath represents in medicine. A conscientious societal position that thoroughly rejects the misuse of neurodata would provide the moral compass for the future development of the neurotechnology field.
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Affiliation(s)
- Rafael Yuste
- Neurotechnology Center, Columbia University, New York, NY, USA.
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82
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Briden M, Norouzi N. Toward metacognition: subject-aware contrastive deep fusion representation learning for EEG analysis. BIOLOGICAL CYBERNETICS 2023; 117:363-372. [PMID: 37402000 PMCID: PMC10600301 DOI: 10.1007/s00422-023-00967-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 05/26/2023] [Indexed: 07/05/2023]
Abstract
We propose a subject-aware contrastive learning deep fusion neural network framework for effectively classifying subjects' confidence levels in the perception of visual stimuli. The framework, called WaveFusion, is composed of lightweight convolutional neural networks for per-lead time-frequency analysis and an attention network for integrating the lightweight modalities for final prediction. To facilitate the training of WaveFusion, we incorporate a subject-aware contrastive learning approach by taking advantage of the heterogeneity within a multi-subject electroencephalogram dataset to boost representation learning and classification accuracy. The WaveFusion framework demonstrates high accuracy in classifying confidence levels by achieving a classification accuracy of 95.7% while also identifying influential brain regions.
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Affiliation(s)
- Michael Briden
- Baskin Engineering, UC Santa Cruz, 1156 High Street, Santa Cruz, CA 95064 USA
| | - Narges Norouzi
- Electrical Engineering and Computer Sciences Department, UC Berkeley, Soda Hall, Berkeley, CA 94709 USA
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83
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Crone N, Candrea D, Shah S, Luo S, Angrick M, Rabbani Q, Coogan C, Milsap G, Nathan K, Wester B, Anderson W, Rosenblatt K, Clawson L, Maragakis N, Vansteensel M, Tenore F, Ramsey N, Fifer M, Uchil A. A click-based electrocorticographic brain-computer interface enables long-term high-performance switch-scan spelling. RESEARCH SQUARE 2023:rs.3.rs-3158792. [PMID: 37841873 PMCID: PMC10571601 DOI: 10.21203/rs.3.rs-3158792/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2023]
Abstract
Background Brain-computer interfaces (BCIs) can restore communication in movement- and/or speech-impaired individuals by enabling neural control of computer typing applications. Single command "click" decoders provide a basic yet highly functional capability. Methods We sought to test the performance and long-term stability of click-decoding using a chronically implanted high density electrocorticographic (ECoG) BCI with coverage of the sensorimotor cortex in a human clinical trial participant (ClinicalTrials.gov, NCT03567213) with amyotrophic lateral sclerosis (ALS). We trained the participant's click decoder using a small amount of training data (< 44 minutes across four days) collected up to 21 days prior to BCI use, and then tested it over a period of 90 days without any retraining or updating. Results Using this click decoder to navigate a switch-scanning spelling interface, the study participant was able to maintain a median spelling rate of 10.2 characters per min. Though a transient reduction in signal power modulation interrupted testing with this fixed model, a new click decoder achieved comparable performance despite being trained with even less data (< 15 min, within one day). Conclusion These results demonstrate that a click decoder can be trained with a small ECoG dataset while retaining robust performance for extended periods, providing functional text-based communication to BCI users.
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84
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Ye J, Collinger JL, Wehbe L, Gaunt R. Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.18.558113. [PMID: 37781630 PMCID: PMC10541112 DOI: 10.1101/2023.09.18.558113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/03/2023]
Abstract
The neural population spiking activity recorded by intracortical brain-computer interfaces (iBCIs) contain rich structure. Current models of such spiking activity are largely prepared for individual experimental contexts, restricting data volume to that collectable within a single session and limiting the effectiveness of deep neural networks (DNNs). The purported challenge in aggregating neural spiking data is the pervasiveness of context-dependent shifts in the neural data distributions. However, large scale unsupervised pretraining by nature spans heterogeneous data, and has proven to be a fundamental recipe for successful representation learning across deep learning. We thus develop Neural Data Transformer 2 (NDT2), a spatiotemporal Transformer for neural spiking activity, and demonstrate that pretraining can leverage motor BCI datasets that span sessions, subjects, and experimental tasks. NDT2 enables rapid adaptation to novel contexts in downstream decoding tasks and opens the path to deployment of pretrained DNNs for iBCI control. Code: https://github.com/joel99/context_general_bci.
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Affiliation(s)
- Joel Ye
- Rehab Neural Engineering Labs, University of Pittsburgh
- Neuroscience Institute, Carnegie Mellon University
- Center for the Neural Basis of Cognition, Pittsburgh
| | - Jennifer L. Collinger
- Rehab Neural Engineering Labs, University of Pittsburgh
- Center for the Neural Basis of Cognition, Pittsburgh
- Department of Physical Medicine and Rehabilitation, University of Pittsburgh
- Department of Bioengineering, University of Pittsburgh
- Department of Biomedical Engineering, Carnegie Mellon University
| | - Leila Wehbe
- Neuroscience Institute, Carnegie Mellon University
- Center for the Neural Basis of Cognition, Pittsburgh
- Machine Learning Department, Carnegie Mellon University
| | - Robert Gaunt
- Rehab Neural Engineering Labs, University of Pittsburgh
- Center for the Neural Basis of Cognition, Pittsburgh
- Department of Physical Medicine and Rehabilitation, University of Pittsburgh
- Department of Bioengineering, University of Pittsburgh
- Department of Biomedical Engineering, Carnegie Mellon University
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85
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Bok I, Vareberg A, Gokhale Y, Bhatt S, Masterson E, Phillips J, Zhu T, Ren X, Hai A. Wireless agents for brain recording and stimulation modalities. Bioelectron Med 2023; 9:20. [PMID: 37726851 PMCID: PMC10510192 DOI: 10.1186/s42234-023-00122-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 08/19/2023] [Indexed: 09/21/2023] Open
Abstract
New sensors and modulators that interact wirelessly with medical modalities unlock uncharted avenues for in situ brain recording and stimulation. Ongoing miniaturization, material refinement, and sensitization to specific neurophysiological and neurochemical processes are spurring new capabilities that begin to transcend the constraints of traditional bulky and invasive wired probes. Here we survey current state-of-the-art agents across diverse realms of operation and evaluate possibilities depending on size, delivery, specificity and spatiotemporal resolution. We begin by describing implantable and injectable micro- and nano-scale electronic devices operating at or below the radio frequency (RF) regime with simple near field transmission, and continue with more sophisticated devices, nanoparticles and biochemical molecular conjugates acting as dynamic contrast agents in magnetic resonance imaging (MRI), ultrasound (US) transduction and other functional tomographic modalities. We assess the ability of some of these technologies to deliver stimulation and neuromodulation with emerging probes and materials that provide minimally invasive magnetic, electrical, thermal and optogenetic stimulation. These methodologies are transforming the repertoire of readily available technologies paired with compatible imaging systems and hold promise toward broadening the expanse of neurological and neuroscientific diagnostics and therapeutics.
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Affiliation(s)
- Ilhan Bok
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
- Department of Electrical and Computer Engineering, University of WI - Madison, Madison, WI, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Adam Vareberg
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Yash Gokhale
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Suyash Bhatt
- Department of Electrical and Computer Engineering, University of WI - Madison, Madison, WI, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Emily Masterson
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Jack Phillips
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
| | - Tianxiang Zhu
- Department of Electrical and Computer Engineering, University of WI - Madison, Madison, WI, USA
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA
| | - Xiaoxuan Ren
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA
- Department of Electrical and Computer Engineering, University of WI - Madison, Madison, WI, USA
| | - Aviad Hai
- Department of Biomedical Engineering, University of WI - Madison, 1550 Engineering Dr, Madison, WI, Rm 2112, USA.
- Department of Electrical and Computer Engineering, University of WI - Madison, Madison, WI, USA.
- Wisconsin Institute for Translational Neuroengineering (WITNe), Madison, WI, USA.
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86
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Berezutskaya J, Freudenburg ZV, Vansteensel MJ, Aarnoutse EJ, Ramsey NF, van Gerven MAJ. Direct speech reconstruction from sensorimotor brain activity with optimized deep learning models. J Neural Eng 2023; 20:056010. [PMID: 37467739 PMCID: PMC10510111 DOI: 10.1088/1741-2552/ace8be] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Revised: 07/12/2023] [Accepted: 07/19/2023] [Indexed: 07/21/2023]
Abstract
Objective.Development of brain-computer interface (BCI) technology is key for enabling communication in individuals who have lost the faculty of speech due to severe motor paralysis. A BCI control strategy that is gaining attention employs speech decoding from neural data. Recent studies have shown that a combination of direct neural recordings and advanced computational models can provide promising results. Understanding which decoding strategies deliver best and directly applicable results is crucial for advancing the field.Approach.In this paper, we optimized and validated a decoding approach based on speech reconstruction directly from high-density electrocorticography recordings from sensorimotor cortex during a speech production task.Main results.We show that (1) dedicated machine learning optimization of reconstruction models is key for achieving the best reconstruction performance; (2) individual word decoding in reconstructed speech achieves 92%-100% accuracy (chance level is 8%); (3) direct reconstruction from sensorimotor brain activity produces intelligible speech.Significance.These results underline the need for model optimization in achieving best speech decoding results and highlight the potential that reconstruction-based speech decoding from sensorimotor cortex can offer for development of next-generation BCI technology for communication.
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Affiliation(s)
- Julia Berezutskaya
- Brain Center, Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht 3584 CX, The Netherlands
- Donders Center for Brain, Cognition and Behaviour, Nijmegen 6525 GD, The Netherlands
| | - Zachary V Freudenburg
- Brain Center, Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht 3584 CX, The Netherlands
| | - Mariska J Vansteensel
- Brain Center, Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht 3584 CX, The Netherlands
| | - Erik J Aarnoutse
- Brain Center, Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht 3584 CX, The Netherlands
| | - Nick F Ramsey
- Brain Center, Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht 3584 CX, The Netherlands
| | - Marcel A J van Gerven
- Donders Center for Brain, Cognition and Behaviour, Nijmegen 6525 GD, The Netherlands
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87
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Merk T, Köhler R, Peterson V, Lyra L, Vanhoecke J, Chikermane M, Binns T, Li N, Walton A, Bush A, Sisterson N, Busch J, Lofredi R, Habets J, Huebl J, Zhu G, Yin Z, Zhao B, Merkl A, Bajbouj M, Krause P, Faust K, Schneider GH, Horn A, Zhang J, Kühn A, Richardson RM, Neumann WJ. Invasive neurophysiology and whole brain connectomics for neural decoding in patients with brain implants. RESEARCH SQUARE 2023:rs.3.rs-3212709. [PMID: 37790428 PMCID: PMC10543023 DOI: 10.21203/rs.3.rs-3212709/v1] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
Brain computer interfaces (BCI) provide unprecedented spatiotemporal precision that will enable significant expansion in how numerous brain disorders are treated. Decoding dynamic patient states from brain signals with machine learning is required to leverage this precision, but a standardized framework for identifying and advancing novel clinical BCI approaches does not exist. Here, we developed a platform that integrates brain signal decoding with connectomics and demonstrate its utility across 123 hours of invasively recorded brain data from 73 neurosurgical patients treated for movement disorders, depression and epilepsy. First, we introduce connectomics-informed movement decoders that generalize across cohorts with Parkinson's disease and epilepsy from the US, Europe and China. Next, we reveal network targets for emotion decoding in left prefrontal and cingulate circuits in DBS patients with major depression. Finally, we showcase opportunities to improve seizure detection in responsive neurostimulation for epilepsy. Our platform provides rapid, high-accuracy decoding for precision medicine approaches that can dynamically adapt neuromodulation therapies in response to the individual needs of patients.
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88
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Xiao J, Provenza NR, Asfouri J, Myers J, Mathura RK, Metzger B, Adkinson JA, Allawala AB, Pirtle V, Oswalt D, Shofty B, Robinson ME, Mathew SJ, Goodman WK, Pouratian N, Schrater PR, Patel AB, Tolias AS, Bijanki KR, Pitkow X, Sheth SA. Decoding Depression Severity From Intracranial Neural Activity. Biol Psychiatry 2023; 94:445-453. [PMID: 36736418 PMCID: PMC10394110 DOI: 10.1016/j.biopsych.2023.01.020] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Revised: 01/09/2023] [Accepted: 01/25/2023] [Indexed: 02/05/2023]
Abstract
BACKGROUND Disorders of mood and cognition are prevalent, disabling, and notoriously difficult to treat. Fueling this challenge in treatment is a significant gap in our understanding of their neurophysiological basis. METHODS We recorded high-density neural activity from intracranial electrodes implanted in depression-relevant prefrontal cortical regions in 3 human subjects with severe depression. Neural recordings were labeled with depression severity scores across a wide dynamic range using an adaptive assessment that allowed sampling with a temporal frequency greater than that possible with typical rating scales. We modeled these data using regularized regression techniques with region selection to decode depression severity from the prefrontal recordings. RESULTS Across prefrontal regions, we found that reduced depression severity is associated with decreased low-frequency neural activity and increased high-frequency activity. When constraining our model to decode using a single region, spectral changes in the anterior cingulate cortex best predicted depression severity in all 3 subjects. Relaxing this constraint revealed unique, individual-specific sets of spatiospectral features predictive of symptom severity, reflecting the heterogeneous nature of depression. CONCLUSIONS The ability to decode depression severity from neural activity increases our fundamental understanding of how depression manifests in the human brain and provides a target neural signature for personalized neuromodulation therapies.
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Affiliation(s)
- Jiayang Xiao
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas; Department of Neuroscience, Baylor College of Medicine, Houston, Texas
| | - Nicole R Provenza
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Joseph Asfouri
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas
| | - John Myers
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Raissa K Mathura
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Brian Metzger
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Joshua A Adkinson
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | | | - Victoria Pirtle
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Denise Oswalt
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Ben Shofty
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Meghan E Robinson
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Sanjay J Mathew
- Department of Psychiatry, Baylor College of Medicine, Houston, Texas
| | - Wayne K Goodman
- Department of Psychiatry, Baylor College of Medicine, Houston, Texas
| | - Nader Pouratian
- Department of Neurological Surgery, UT Southwestern Medical Center, Dallas, Texas
| | - Paul R Schrater
- Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota; Department of Psychology, University of Minnesota, Minneapolis, Minnesota
| | - Ankit B Patel
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas; Department of Electrical and Computer Engineering, Rice University, Houston, Texas; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas
| | - Andreas S Tolias
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas; Department of Electrical and Computer Engineering, Rice University, Houston, Texas; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas
| | - Kelly R Bijanki
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas
| | - Xaq Pitkow
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas; Department of Electrical and Computer Engineering, Rice University, Houston, Texas; Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas
| | - Sameer A Sheth
- Department of Neurosurgery, Baylor College of Medicine, Houston, Texas.
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89
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Tian T, Zhang S, Yang M. Recent progress and challenges in the treatment of spinal cord injury. Protein Cell 2023; 14:635-652. [PMID: 36856750 PMCID: PMC10501188 DOI: 10.1093/procel/pwad003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 12/29/2022] [Indexed: 02/12/2023] Open
Abstract
Spinal cord injury (SCI) disrupts the structural and functional connectivity between the higher center and the spinal cord, resulting in severe motor, sensory, and autonomic dysfunction with a variety of complications. The pathophysiology of SCI is complicated and multifaceted, and thus individual treatments acting on a specific aspect or process are inadequate to elicit neuronal regeneration and functional recovery after SCI. Combinatory strategies targeting multiple aspects of SCI pathology have achieved greater beneficial effects than individual therapy alone. Although many problems and challenges remain, the encouraging outcomes that have been achieved in preclinical models offer a promising foothold for the development of novel clinical strategies to treat SCI. In this review, we characterize the mechanisms underlying axon regeneration of adult neurons and summarize recent advances in facilitating functional recovery following SCI at both the acute and chronic stages. In addition, we analyze the current status, remaining problems, and realistic challenges towards clinical translation. Finally, we consider the future of SCI treatment and provide insights into how to narrow the translational gap that currently exists between preclinical studies and clinical practice. Going forward, clinical trials should emphasize multidisciplinary conversation and cooperation to identify optimal combinatorial approaches to maximize therapeutic benefit in humans with SCI.
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Affiliation(s)
- Ting Tian
- Ministry of Education Key Laboratory of Protein Science, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing 100084, China
| | - Sensen Zhang
- Ministry of Education Key Laboratory of Protein Science, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing 100084, China
| | - Maojun Yang
- Ministry of Education Key Laboratory of Protein Science, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing 100084, China
- Cryo-EM Facility Center, Southern University of Science and Technology, Shenzhen 518055, China
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90
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Versteeg C, Sedler AR, McCart JD, Pandarinath C. Expressive dynamics models with nonlinear injective readouts enable reliable recovery of latent features from neural activity. ARXIV 2023:arXiv:2309.06402v1. [PMID: 37744459 PMCID: PMC10516113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
The advent of large-scale neural recordings has enabled new approaches that aim to discover the computational mechanisms of neural circuits by understanding the rules that govern how their state evolves over time. While these neural dynamics cannot be directly measured, they can typically be approximated by low-dimensional models in a latent space. How these models represent the mapping from latent space to neural space can affect the interpretability of the latent representation. We show that typical choices for this mapping (e.g., linear or MLP) often lack the property of injectivity, meaning that changes in latent state are not obligated to affect activity in the neural space. During training, non-injective readouts incentivize the invention of dynamics that misrepresent the underlying system and the computation it performs. Combining our injective Flow readout with prior work on interpretable latent dynamics models, we created the Ordinary Differential equations autoencoder with Injective Nonlinear readout (ODIN), which learns to capture latent dynamical systems that are nonlinearly embedded into observed neural activity via an approximately injective nonlinear mapping. We show that ODIN can recover nonlinearly embedded systems from simulated neural activity, even when the nature of the system and embedding are unknown. Additionally, we show that ODIN enables the unsupervised recovery of underlying dynamical features (e.g., fixed points) and embedding geometry. When applied to biological neural recordings, ODIN can reconstruct neural activity with comparable accuracy to previous state-of-the-art methods while using substantially fewer latent dimensions. Overall, ODIN's accuracy in recovering ground-truth latent features and ability to accurately reconstruct neural activity with low dimensionality make it a promising method for distilling interpretable dynamics that can help explain neural computation.
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Affiliation(s)
- Christopher Versteeg
- Wallace H. Coulter Department of Biomedical Engineering Emory University and Georgia Institute of Technology Atlanta, GA, USA
| | - Andrew R Sedler
- Wallace H. Coulter Department of Biomedical Engineering Emory University and Georgia Institute of Technology Atlanta, GA, USA
- Center for Machine Learning Georgia Institute of Technology Atlanta, GA, USA
| | - Jonathan D McCart
- Wallace H. Coulter Department of Biomedical Engineering Emory University and Georgia Institute of Technology Atlanta, GA, USA
- Center for Machine Learning Georgia Institute of Technology Atlanta, GA, USA
| | - Chethan Pandarinath
- Wallace H. Coulter Department of Biomedical Engineering Emory University and Georgia Institute of Technology Atlanta, GA, USA
- Center for Machine Learning Georgia Institute of Technology Atlanta, GA, USA
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91
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Sun Y, Shen A, Du C, Sun J, Chen X, Gao X. A Real-Time Non-Implantation Bi-Directional Brain-Computer Interface Solution Without Stimulation Artifacts. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3566-3575. [PMID: 37665696 DOI: 10.1109/tnsre.2023.3311750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2023]
Abstract
The non-implantation bi-directional brain-computer interface (BCI) is a neural interface technology that enables direct two-way communication between the brain and the external world by both "reading" neural signals and "writing" stimulation patterns to the brain. This technology has vast potential applications, such as improving the quality of life for individuals with neurological and mental illnesses and even expanding the boundaries of human capabilities. Nonetheless, non-implantation bi-directional BCIs face challenges in generating real-time feedback and achieving compatibility between stimulation and recording. These issues arise due to the considerable overlap between electrical stimulation frequencies and electrophysiological recording frequencies, as well as the impediment caused by the skull to the interaction of external and internal currents. To address those challenges, this work proposes a novel solution that combines the temporal interference stimulation paradigm and minimally invasive skull modification. A longitudinal animal experiment has preliminarily validated the feasibility of the proposed method. In signal recording experiments, the average impedance of our scheme decreased by 4.59 kΩ , about 67%, compared to the conventional technique at 18 points. The peak-to-peak value of the Somatosensory Evoked Potential increased by 8%. Meanwhile, the signal-to-noise ratio of Steady-State Visual Evoked Potential increased by 5.13 dB, and its classification accuracy increased by 44%. The maximum bandwidth of the resting state rose by 63%. In electrical stimulation experiments, the signal-to-noise ratio of the low-frequency response evoked by our scheme rose by 8.04 dB, and no stimulation artifacts were generated. The experimental results show that signal quality in acquisition has significantly improved, and frequency-band isolation eliminates stimulation artifacts at the source. The acquisition and stimulation pathways are real-time compatible in this non-implantation bi-directional BCI solution, which can provide technical support and theoretical guidance for creating closed-loop adaptive systems coupled with particular application scenarios in the future.
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92
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Kosnoff J, Yu K, Liu C, He B. Transcranial Focused Ultrasound to V5 Enhances Human Visual Motion Brain-Computer Interface by Modulating Feature-Based Attention. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.04.556252. [PMID: 37732253 PMCID: PMC10508752 DOI: 10.1101/2023.09.04.556252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/22/2023]
Abstract
Paralysis affects roughly 1 in 50 Americans. While there is no cure for the condition, brain-computer interfaces (BCI) can allow users to control a device with their mind, bypassing the paralyzed region. Non-invasive BCIs still have high error rates, which is hypothesized to be reduced with concurrent targeted neuromodulation. This study examines whether transcranial focused ultrasound (tFUS) modulation can improve BCI outcomes, and what the underlying mechanism of action might be through high-density electroencephalography (EEG)-based source imaging (ESI) analyses. V5-targeted tFUS significantly reduced the error for the BCI speller task. ESI analyses showed significantly increased theta activity in the tFUS condition at both V5 and downstream the dorsal visual processing pathway. Correlation analysis indicates that the dorsal processing pathway connection was preserved during tFUS stimulation, whereas extraneous connections were severed. These results suggest that V5-targeted tFUS' mechanism of action is to raise the brain's feature-based attention to visual motion.
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93
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Zhang R, Dong G, Li M, Tang Z, Chen X, Cui H. A Calibration-Free Hybrid BCI Speller System Based on High-Frequency SSVEP and sEMG. IEEE Trans Neural Syst Rehabil Eng 2023; 31:3492-3500. [PMID: 37624717 DOI: 10.1109/tnsre.2023.3308779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/27/2023]
Abstract
Hybrid brain-computer interface (hBCI) systems that combine steady-state visual evoked potential (SSVEP) and surface electromyography (sEMG) signals have attracted attention of researchers due to the advantage of exhibiting significantly improved system performance. However, almost all existing studies adopt low-frequency SSVEP to build hBCI. It produces much more visual fatigue than high-frequency SSVEP. Therefore, the current study attempts to build a hBCI based on high-frequency SSVEP and sEMG. With these two signals, this study designed and realized a 32-target hBCI speller system. Thirty-two targets were separated from the middle into two groups. Each side contained 16 sets of targets with different high-frequency visual stimuli (i.e., 31-34.75 Hz with an interval of 0.25 Hz). sEMG was utilized to choose the group and SSVEP was adopted to identify intra-group targets. The filter bank canonical correlation analysis (FBCCA) and the root mean square value (RMS) methods were used to identify signals. Therefore, the proposed system allowed users to operate it without system calibration. A total of 12 healthy subjects participated in online experiment, with an average accuracy of 93.52 ± 1.66% and the average information transfer rate (ITR) reached 93.50 ± 3.10 bits/min. Furthermore, 12 participants perfectly completed the free-spelling tasks. These results of the experiments indicated feasibility and practicality of the proposed hybrid BCI speller system.
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94
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Ma X, Rizzoglio F, Bodkin KL, Perreault E, Miller LE, Kennedy A. Using adversarial networks to extend brain computer interface decoding accuracy over time. eLife 2023; 12:e84296. [PMID: 37610305 PMCID: PMC10446822 DOI: 10.7554/elife.84296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 08/01/2023] [Indexed: 08/24/2023] Open
Abstract
Existing intracortical brain computer interfaces (iBCIs) transform neural activity into control signals capable of restoring movement to persons with paralysis. However, the accuracy of the 'decoder' at the heart of the iBCI typically degrades over time due to turnover of recorded neurons. To compensate, decoders can be recalibrated, but this requires the user to spend extra time and effort to provide the necessary data, then learn the new dynamics. As the recorded neurons change, one can think of the underlying movement intent signal being expressed in changing coordinates. If a mapping can be computed between the different coordinate systems, it may be possible to stabilize the original decoder's mapping from brain to behavior without recalibration. We previously proposed a method based on Generalized Adversarial Networks (GANs), called 'Adversarial Domain Adaptation Network' (ADAN), which aligns the distributions of latent signals within underlying low-dimensional neural manifolds. However, we tested ADAN on only a very limited dataset. Here we propose a method based on Cycle-Consistent Adversarial Networks (Cycle-GAN), which aligns the distributions of the full-dimensional neural recordings. We tested both Cycle-GAN and ADAN on data from multiple monkeys and behaviors and compared them to a third, quite different method based on Procrustes alignment of axes provided by Factor Analysis. All three methods are unsupervised and require little data, making them practical in real life. Overall, Cycle-GAN had the best performance and was easier to train and more robust than ADAN, making it ideal for stabilizing iBCI systems over time.
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Affiliation(s)
- Xuan Ma
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
| | - Fabio Rizzoglio
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
| | - Kevin L Bodkin
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
| | - Eric Perreault
- Department of Biomedical Engineering, Northwestern UniversityEvanstonUnited States
- Department of Physical Medicine and Rehabilitation, Northwestern UniversityChicagoUnited States
- Shirley Ryan AbilityLabChicagoUnited States
| | - Lee E Miller
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
- Department of Biomedical Engineering, Northwestern UniversityEvanstonUnited States
- Department of Physical Medicine and Rehabilitation, Northwestern UniversityChicagoUnited States
- Shirley Ryan AbilityLabChicagoUnited States
| | - Ann Kennedy
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
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Lei Y, Zhou Q, Tao Y. Decision Aids in the ICU: a scoping review. BMJ Open 2023; 13:e075239. [PMID: 37607783 PMCID: PMC10445349 DOI: 10.1136/bmjopen-2023-075239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 08/07/2023] [Indexed: 08/24/2023] Open
Abstract
OBJECTIVE The purpose of this scoping review was to synthesise the effectiveness and acceptability of decision aids for critically ill patients and family members in the intensive care unit (ICU). METHODS A systematic search of four electronic databases and grey literature was undertaken to identify relevant studies on the application of decision aids in the ICU, without publication date restriction, through March 2023. The methodological framework proposed by Arksey and O'Malley was used to guide the scoping review. RESULTS Fourteen papers were ultimately included in this review. However, only nine decision aids were available, and it is noteworthy that many of these studies focused on the iterative development and testing of individual decision aids. Among the included studies, 92% (n=13) were developed in North America, with a primary focus on goals of care and life-sustaining treatments. The summary of the effect of decision aid application revealed that the most common indicators were the level of knowledge and code status, and some promising signals disappeared in randomised trials. CONCLUSIONS The complexity of treatment decisions in the ICU exceeds the current capabilities of existing decision aids. There is a clear gap in decision aids that are tailored to different cultural contexts, highlighting the need to expand the scope of their application. In addition, rigorous quality control is very important for randomised controlled trial, and indicators for assessing the effectiveness of decision aids need to be further clarified.
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Affiliation(s)
- Yuling Lei
- Department of Nursing, Hangzhou Normal University, Hangzhou, Zhejiang, China
| | - Qi Zhou
- Department of Nursing, Hangzhou Normal University, Hangzhou, Zhejiang, China
| | - Yuexian Tao
- Department of Nursing, Hangzhou Normal University, Hangzhou, Zhejiang, China
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96
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Yeom HG, Kim JS, Chung CK. A magnetoencephalography dataset during three-dimensional reaching movements for brain-computer interfaces. Sci Data 2023; 10:552. [PMID: 37607973 PMCID: PMC10444808 DOI: 10.1038/s41597-023-02454-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 08/08/2023] [Indexed: 08/24/2023] Open
Abstract
Studying the motor-control mechanisms of the brain is critical in academia and also has practical implications because techniques such as brain-computer interfaces (BCIs) can be developed based on brain mechanisms. Magnetoencephalography (MEG) signals have the highest spatial resolution (~3 mm) and temporal resolution (~1 ms) among the non-invasive methods. Therefore, the MEG is an excellent modality for investigating brain mechanisms. However, publicly available MEG data remains scarce due to expensive MEG equipment, requiring a magnetically shielded room, and high maintenance costs for the helium gas supply. In this study, we share the 306-channel MEG and 3-axis accelerometer signals acquired during three-dimensional reaching movements. Additionally, we provide analysis results and MATLAB codes for time-frequency analysis, F-value time-frequency analysis, and topography analysis. These shared MEG datasets offer valuable resources for investigating brain activities or evaluating the accuracy of prediction algorithms. To the best of our knowledge, this data is the only publicly available MEG data measured during reaching movements.
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Affiliation(s)
- Hong Gi Yeom
- Department of Electronics Engineering, Chosun University, 309 Pilmundae-ro, Dong-gu, Gwangju, 61452, Republic of Korea
- Interdisciplinary Program in IT-Bio Convergence System, Chosun University, Gwangju, 61452, Republic of Korea
| | - June Sic Kim
- Clinical Research Institute, Konkuk University Medical Center, 120-1 Neungdong-ro, Gwangjin-gu, Seoul, 05030, Republic of Korea.
| | - Chun Kee Chung
- Interdisciplinary Program in Neuroscience, Seoul National University, Seoul, 08826, Republic of Korea
- Department of Neurosurgery, Seoul National University College of Medicine and Hospital, Seoul, 03080, Republic of Korea
- Neuroscience Research Institute, Seoul National University Hospital, Seoul, 03080, Republic of Korea
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97
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Zheng H, Niu L, Qiu W, Liang D, Long X, Li G, Liu Z, Meng L. The Emergence of Functional Ultrasound for Noninvasive Brain-Computer Interface. RESEARCH (WASHINGTON, D.C.) 2023; 6:0200. [PMID: 37588619 PMCID: PMC10427153 DOI: 10.34133/research.0200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 07/04/2023] [Indexed: 08/18/2023]
Abstract
A noninvasive brain-computer interface is a central task in the comprehensive analysis and understanding of the brain and is an important challenge in international brain-science research. Current implanted brain-computer interfaces are cranial and invasive, which considerably limits their applications. The development of new noninvasive reading and writing technologies will advance substantial innovations and breakthroughs in the field of brain-computer interfaces. Here, we review the theory and development of the ultrasound brain functional imaging and its applications. Furthermore, we introduce latest advancements in ultrasound brain modulation and its applications in rodents, primates, and human; its mechanism and closed-loop ultrasound neuromodulation based on electroencephalograph are also presented. Finally, high-frequency acoustic noninvasive brain-computer interface is prospected based on ultrasound super-resolution imaging and acoustic tweezers.
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Affiliation(s)
- Hairong Zheng
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Lili Niu
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Weibao Qiu
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Dong Liang
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Xiaojing Long
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Guanglin Li
- Shenzhen Institute of Advanced Integration Technology, Chinese Academy of Sciences and The Chinese University of Hong Kong, Shenzhen, 518055, China
| | - Zhiyuan Liu
- Shenzhen Institute of Advanced Integration Technology, Chinese Academy of Sciences and The Chinese University of Hong Kong, Shenzhen, 518055, China
| | - Long Meng
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology,
Chinese Academy of Sciences, Shenzhen, 518055, China
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98
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Natraj N, Seko S, Abiri R, Yan H, Graham Y, Tu-Chan A, Chang EF, Ganguly K. Flexible regulation of representations on a drifting manifold enables long-term stable complex neuroprosthetic control. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.11.551770. [PMID: 37645922 PMCID: PMC10462094 DOI: 10.1101/2023.08.11.551770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
The nervous system needs to balance the stability of neural representations with plasticity. It is unclear what is the representational stability of simple actions, particularly those that are well-rehearsed in humans, and how it changes in new contexts. Using an electrocorticography brain-computer interface (BCI), we found that the mesoscale manifold and relative representational distances for a repertoire of simple imagined movements were remarkably stable. Interestingly, however, the manifold's absolute location demonstrated day-to-day drift. Strikingly, representational statistics, especially variance, could be flexibly regulated to increase discernability during BCI control without somatotopic changes. Discernability strengthened with practice and was specific to the BCI, demonstrating remarkable contextual specificity. Accounting for drift, and leveraging the flexibility of representations, allowed neuroprosthetic control of a robotic arm and hand for over 7 months without recalibration. Our study offers insight into how electrocorticography can both track representational statistics across long periods and allow long-term complex neuroprosthetic control.
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Affiliation(s)
- Nikhilesh Natraj
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
| | - Sarah Seko
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
| | - Reza Abiri
- Electrical, Computer and Biomedical Engineering, University of Rhode Island, Rhode Island, USA
| | - Hongyi Yan
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
| | - Yasmin Graham
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
| | - Adelyn Tu-Chan
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
| | - Edward F Chang
- Department of Neurological Surgery, Weill Institute for Neuroscience, University of California-San Francisco, San Francisco, California, USA
| | - Karunesh Ganguly
- Dept. of Neurology, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, California, USA
- UCSF - Veteran Affairs Medical Center, San Francisco, California, USA
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99
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Ali YH, Bodkin K, Rigotti-Thompson M, Patel K, Card NS, Bhaduri B, Nason-Tomaszewski SR, Mifsud DM, Hou X, Nicolas C, Allcroft S, Hochberg LR, Yong NA, Stavisky SD, Miller LE, Brandman DM, Pandarinath C. BRAND: A platform for closed-loop experiments with deep network models. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.08.552473. [PMID: 37609167 PMCID: PMC10441362 DOI: 10.1101/2023.08.08.552473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Artificial neural networks (ANNs) are state-of-the-art tools for modeling and decoding neural activity, but deploying them in closed-loop experiments with tight timing constraints is challenging due to their limited support in existing real-time frameworks. Researchers need a platform that fully supports high-level languages for running ANNs (e.g., Python and Julia) while maintaining support for languages that are critical for low-latency data acquisition and processing (e.g., C and C++). To address these needs, we introduce the Backend for Realtime Asynchronous Neural Decoding (BRAND). BRAND comprises Linux processes, termed nodes , which communicate with each other in a graph via streams of data. Its asynchronous design allows for acquisition, control, and analysis to be executed in parallel on streams of data that may operate at different timescales. BRAND uses Redis to send data between nodes, which enables fast inter-process communication and supports 54 different programming languages. Thus, developers can easily deploy existing ANN models in BRAND with minimal implementation changes. In our tests, BRAND achieved <600 microsecond latency between processes when sending large quantities of data (1024 channels of 30 kHz neural data in 1-millisecond chunks). BRAND runs a brain-computer interface with a recurrent neural network (RNN) decoder with less than 8 milliseconds of latency from neural data input to decoder prediction. In a real-world demonstration of the system, participant T11 in the BrainGate2 clinical trial performed a standard cursor control task, in which 30 kHz signal processing, RNN decoding, task control, and graphics were all executed in BRAND. This system also supports real-time inference with complex latent variable models like Latent Factor Analysis via Dynamical Systems. By providing a framework that is fast, modular, and language-agnostic, BRAND lowers the barriers to integrating the latest tools in neuroscience and machine learning into closed-loop experiments.
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100
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Maiseli B, Abdalla AT, Massawe LV, Mbise M, Mkocha K, Nassor NA, Ismail M, Michael J, Kimambo S. Brain-computer interface: trend, challenges, and threats. Brain Inform 2023; 10:20. [PMID: 37540385 PMCID: PMC10403483 DOI: 10.1186/s40708-023-00199-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 07/01/2023] [Indexed: 08/05/2023] Open
Abstract
Brain-computer interface (BCI), an emerging technology that facilitates communication between brain and computer, has attracted a great deal of research in recent years. Researchers provide experimental results demonstrating that BCI can restore the capabilities of physically challenged people, hence improving the quality of their lives. BCI has revolutionized and positively impacted several industries, including entertainment and gaming, automation and control, education, neuromarketing, and neuroergonomics. Notwithstanding its broad range of applications, the global trend of BCI remains lightly discussed in the literature. Understanding the trend may inform researchers and practitioners on the direction of the field, and on where they should invest their efforts more. Noting this significance, we have analyzed 25,336 metadata of BCI publications from Scopus to determine advancement of the field. The analysis shows an exponential growth of BCI publications in China from 2019 onwards, exceeding those from the United States that started to decline during the same period. Implications and reasons for this trend are discussed. Furthermore, we have extensively discussed challenges and threats limiting exploitation of BCI capabilities. A typical BCI architecture is hypothesized to address two prominent BCI threats, privacy and security, as an attempt to make the technology commercially viable to the society.
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Affiliation(s)
- Baraka Maiseli
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania.
| | - Abdi T Abdalla
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Libe V Massawe
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Mercy Mbise
- Department of Computer Science and Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Khadija Mkocha
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Nassor Ally Nassor
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Moses Ismail
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - James Michael
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
| | - Samwel Kimambo
- Department of Electronics and Telecommunications Engineering, College of Information and Communication Technologies, University of Dar es Salaam, 14113, Dar es Salaam, Tanzania
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